HHsearch alignment for GI: 254780747 and conserved domain: PRK03580
>PRK03580 carnitinyl-CoA dehydratase; Provisional.
Probab=99.04 E-value=5.5e-09 Score=76.51 Aligned_cols=161 Identities=21% Similarity=0.246 Sum_probs=107.9
Q ss_pred CCEEEEEEEEEEECC------HHHHHHHHHHHHCCCCCCEEEEECCC-----CCCCHHHHH-----------HHHHHHHH
Q ss_conf 872899997666238------69999999998618998799997588-----888889999-----------99999998
Q gi|254780747|r 35 SPHVARIAIRGQIED------SQELIERIERISRDDSATALIVSLSS-----PGGSAYAGE-----------AIFRAIQK 92 (293)
Q Consensus 35 ~~~i~~i~i~G~I~~------~~~l~~~l~~a~~d~~ik~ivL~i~S-----pGG~~~~~~-----------~i~~ai~~ 92 (293)
T Consensus 11 ~g~Va~itlnrP~~NAl~~~m~~~l~~al~~~~~d~~vrvvvltg~G~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~ 90 (262)
T PRK03580 11 NGSILEITLDRPKANAIDAKTSFAMGEVFLNFRDDPELRVAIITGAGEKFFSAGWDLKAAAEGEAPDADFGPGGFAGLTE 90 (262)
T ss_pred ECCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCEECCCCHHHHHHCCCCCCHHHHHHHHHHHHH
T ss_conf 99999999558764779999999999999998619996599996699960426710766534786431342667899999
Q ss_pred HC-CCCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCC
Q ss_conf 41-47867996033233223210001110001301353455565302102456777420422553155211234666789
Q gi|254780747|r 93 VK-NRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVN 171 (293)
Q Consensus 93 ~k-~~kpvva~~~~~~~S~~Y~iAs~ad~I~a~p~s~vGsiGv~~~~~~~~~ll~k~gi~~~~~~~g~~K~~~~p~~~~s 171 (293)
T Consensus 91 l~~~~kPvIaaV~G~a~GgG~~LalacD~~ia~~~a~f~~pe~------------~lGl~p~----------------~g 142 (262)
T PRK03580 91 IFDLDKPVIAAVNGYAFGGGFELALAADFIVCADNASFALPEA------------KLGIVPD----------------SG 142 (262)
T ss_pred HHHCCCCEEEEECCEEEEHHHHHHHHCCEEEECCCCCEECHHH------------CCCCCCC----------------CC
T ss_conf 9819999999986866618699988527024147876515776------------0367888----------------54
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHC
Q ss_conf 9998877777666667789999851499988998873498237889987798062389899999999741
Q gi|254780747|r 172 PKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALG 241 (293)
Q Consensus 172 ~e~~~~~~~~l~~~~~~f~~~Va~~R~~~~~~~~~~~~g~~~~~~~A~~~GLvD~ig~~~~a~~~l~~~~ 241 (293)
T Consensus 143 ~--~~-----------~l~r~iG~~~-----A~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~~~a~~la 194 (262)
T PRK03580 143 G--VL-----------RLPKRLPPAI-----VNEMLMTGRRMDAEEALRWGLVNRVVSQAELMDRARELA 194 (262)
T ss_pred H--HH-----------HHHHHHHHHH-----HHHHHHCCCCCCHHHHHHCCCEEEECCHHHHHHHHHHHH
T ss_conf 9--99-----------9999970999-----999987189875999988799105438469999999999