HHsearch alignment for GI: 254780747 and conserved domain: PRK11154
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed.
Probab=99.04 E-value=2.6e-09 Score=78.57 Aligned_cols=164 Identities=17% Similarity=0.225 Sum_probs=106.8
Q ss_pred CCCCCCEEEEEEEEEE--ECC------HHHHHHHHHHHHCCCCCCEEEEECC-----CCCCCHHH---------H----H
Q ss_conf 5677872899997666--238------6999999999861899879999758-----88888899---------9----9
Q gi|254780747|r 31 VEDNSPHVARIAIRGQ--IED------SQELIERIERISRDDSATALIVSLS-----SPGGSAYA---------G----E 84 (293)
Q Consensus 31 ~~~~~~~i~~i~i~G~--I~~------~~~l~~~l~~a~~d~~ik~ivL~i~-----SpGG~~~~---------~----~ 84 (293)
T Consensus 9 ~~~~~dgIa~itlnrP~~~~Nal~~~~~~~L~~~l~~~~~d~~vr~vVl~sg~g~~F~AGaDl~~~~~~~~~~~~~~~~~ 88 (706)
T PRK11154 9 LNVRLDNIAILTIDVPGEKMNTLKAEFAEQVRAILKQIKEDKSLKGVVFISGKPDNFIAGADINMLAACKTAQEAEALAR 88 (706)
T ss_pred EEECCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCEEEECCCHHHHHCCCCHHHHHHHHH
T ss_conf 99867998999989999776789999999999999998509996699995179980470729776724787577999998
Q ss_pred HHHHHHHHHC-CCCCEEEEECCCCCCCCCCCCCCCCCCCCCHHH--HHHHHHHHHCCCHHHHHHHHHHHCCEEEEECCCC
Q ss_conf 9999999841-478679960332332232100011100013013--5345556530210245677742042255315521
Q gi|254780747|r 85 AIFRAIQKVK-NRKPVITEVHEMAASAGYLISCASNIIVAAETS--LVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMK 161 (293)
Q Consensus 85 ~i~~ai~~~k-~~kpvva~~~~~~~S~~Y~iAs~ad~I~a~p~s--~vGsiGv~~~~~~~~~ll~k~gi~~~~~~~g~~K 161 (293)
T Consensus 89 ~~~~~~~~i~~~~kPvIAAvnG~a~GgG~ElaLacD~RiAs~~a~~~~g~Pev------------~lGl~P--------- 147 (706)
T PRK11154 89 QGQQLFAEIEALPIPVVAAIHGACLGGGLELALACHYRVCTDDPKTVLGLPEV------------QLGLLP--------- 147 (706)
T ss_pred HHHHHHHHHHHCCCCEEEEECCEEEHHHHHHHHHCCEEEECCCCCCCCCCCCC------------EECCCC---------
T ss_conf 88999999980999889998786418999999968999961784632136431------------027788---------
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHH-HHHHHHCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHH
Q ss_conf 12346667899998877777666667789999851499988-99887349823788998779806238989999999974
Q gi|254780747|r 162 AEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD-KTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYAL 240 (293)
Q Consensus 162 ~~~~p~~~~s~e~~~~~~~~l~~~~~~f~~~Va~~R~~~~~-~~~~~~~g~~~~~~~A~~~GLvD~ig~~~~a~~~l~~~ 240 (293)
T Consensus 148 g~Ggt---------~rLp-----------------RliG~~~A~eliltG~~i~A~eA~~~GLVd~VVp~~~L~~~A~~~ 201 (706)
T PRK11154 148 GSGGT---------QRLP-----------------RLIGVSTALDMILTGKQLRAKQALKLGLVDDVVPQSILLEVAVEL 201 (706)
T ss_pred CCCCH---------HHCC-----------------HHCCHHHHHHHHHCCCCCCHHHHHHCCCCCEECCCHHHHHHHHHH
T ss_conf 99724---------0221-----------------123899999764007878899999779875515908999999999
Q ss_pred C
Q ss_conf 1
Q gi|254780747|r 241 G 241 (293)
Q Consensus 241 ~ 241 (293)
T Consensus 202 a 202 (706)
T PRK11154 202 A 202 (706)
T ss_pred H
T ss_conf 9