HHsearch alignment for GI: 254780747 and conserved domain: PRK11778
>PRK11778 putative periplasmic protease; Provisional.
Probab=100.00 E-value=0 Score=313.01 Aligned_cols=236 Identities=21% Similarity=0.345 Sum_probs=195.0
Q ss_pred CCCCEEEEEEEEEEECCH--H----HHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCC-CCCEEEEECC
Q ss_conf 778728999976662386--9----99999999861899879999758888888999999999998414-7867996033
Q gi|254780747|r 33 DNSPHVARIAIRGQIEDS--Q----ELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKN-RKPVITEVHE 105 (293)
Q Consensus 33 ~~~~~i~~i~i~G~I~~~--~----~l~~~l~~a~~d~~ik~ivL~i~SpGG~~~~~~~i~~ai~~~k~-~kpvva~~~~ 105 (293)
T Consensus 66 ~~~~r~fvldF~Gdi~As~v~~LReeitaiL~~a~~~---DeV~~rles~GG~v~~yglaasql~rlr~~~i~ltv~vd~ 142 (317)
T PRK11778 66 LGKPRVFVLDFKGDIDASEVESLREEITAILAVAKPG---DEVLLRLESPGGVVHGYGLAASQLQRLRDAGIPLTVCVDK 142 (317)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCC---CEEEEEEECCCCEEEHHHHHHHHHHHHHHCCCCEEEEEEE
T ss_conf 5786399995468603776777899999999748789---8699999789956660577999999998679928999701
Q ss_pred CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 23322321000111000130135345556530210245677742042255315521123466678999988777776666
Q gi|254780747|r 106 MAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSS 185 (293)
Q Consensus 106 ~~~S~~Y~iAs~ad~I~a~p~s~vGsiGv~~~~~~~~~ll~k~gi~~~~~~~g~~K~~~~p~~~~s~e~~~~~~~~l~~~ 185 (293)
T Consensus 143 VAASGGY~mAc~ADkIvA~P~tItGSIGVia~~Pnf~~lLkK~GI~~e~~taG~~K~tlt~f~e~T~e~r~k~q~~le~~ 222 (317)
T PRK11778 143 VAASGGYMMACVADKIIAAPFAIVGSIGVVAQIPNFHRLLKKHDIDFELHTAGEYKRTLTLFGENTEEGREKFREELEET 222 (317)
T ss_pred EECCCCEEEEECCCEEEECCCCEEEEEEEEEECCCHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 30243022652188799878634653210166658899999859965998145677777888999999999999999999
Q ss_pred HHHHHHHHHHCCCCCHHHHHHHHCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCCCEEECCCCCCHHHHHHHH
Q ss_conf 67789999851499988998873498237889987798062389899999999741877653012014421124556511
Q gi|254780747|r 186 YHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKIKDWNPPKNYWFCDLKN 265 (293)
Q Consensus 186 ~~~f~~~Va~~R~~~~~~~~~~~~g~~~~~~~A~~~GLvD~ig~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (293)
T Consensus 223 h~~Fk~~Va~~Rp~--~did~VAtGrvW~G~qAlelGLVDeIgTsDd~l~~~~~~~~v---~~v-~~~~kk~-l~~r-l~ 294 (317)
T PRK11778 223 HQLFKDFVQRYRPQ--LDIDKVATGEHWYGQQALELGLVDEIQTSDDYLLELMEEREV---LKV-RYQQKKK-LIER-LG 294 (317)
T ss_pred HHHHHHHHHHCCCC--CCHHHHCCCCEEEHHHHHHCCCCCCCCCHHHHHHHHHCCCCE---EEE-EEEECCC-HHHH-HH
T ss_conf 99999999863984--547875687577577698759974256689999987233848---999-9750799-8999-88
Q ss_pred HHHHHHHHHHHHHH
Q ss_conf 04778788888887
Q gi|254780747|r 266 LSISSLLEDTIPLM 279 (293)
Q Consensus 266 ~~~~~~~~~~~~~l 279 (293)
T Consensus 295 ~~~~~~~~~~~~~~ 308 (317)
T PRK11778 295 GSAAESADRLLLRL 308 (317)
T ss_pred HHHHHHHHHHHHHH
T ss_conf 99999999999999