HHsearch alignment for GI: 254780747 and conserved domain: PRK12551

>PRK12551 ATP-dependent Clp protease proteolytic subunit; Reviewed.
Probab=99.56  E-value=9.4e-14  Score=106.50  Aligned_cols=160  Identities=23%  Similarity=0.302  Sum_probs=116.8

Q ss_pred             EEEEEEEECCH--HHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCC
Q ss_conf             99976662386--9999999998618998799997588888889999999999984147867996033233223210001
Q gi|254780747|r   40 RIAIRGQIEDS--QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCA  117 (293)
Q Consensus        40 ~i~i~G~I~~~--~~l~~~l~~a~~d~~ik~ivL~i~SpGG~~~~~~~i~~ai~~~k~~kpvva~~~~~~~S~~Y~iAs~  117 (293)
T Consensus        27 iifl~~~i~~~~a~~ii~~ll~L~~e~~~k~I~lyINSpGG~v~~glaIyD~m~~~~--~~V~Ti~~G~aaS~as~il~a  104 (196)
T PRK12551         27 IIFLGEPVTSDSANRIVAQLLFLEAEDPEKDIYLYINSPGGSVYDGLGIFDTMQHVK--PDVHTVCVGLAASMGAFLLCA  104 (196)
T ss_pred             EEEECCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHCC--CCEEEEEEEEEHHHHHHHHHC
T ss_conf             899898127899999999999860729799979999799866655699999996269--997999962402256789974


Q ss_pred             CC--CCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             11--0001301353455565302102456777420422553155211234666789999887777766666778999985
Q gi|254780747|r  118 SN--IIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSE  195 (293)
Q Consensus       118 ad--~I~a~p~s~vGsiGv~~~~~~~~~ll~k~gi~~~~~~~g~~K~~~~p~~~~s~e~~~~~~~~l~~~~~~f~~~Va~  195 (293)
T Consensus       105 G~kgkR~~~pns~iMIH-----qp----------------~~~--------~~-G~a~di~~~a~el~~~~~~i~~i~a~  154 (196)
T PRK12551        105 GAKGKRSSLQHSRIMIH-----QP----------------LGG--------AR-GQASDIRIQADEILFLKERLNTELSE  154 (196)
T ss_pred             CCCCCCCCCCCCEEEEC-----CC----------------CCC--------CC-CCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             88886012656024770-----56----------------767--------56-75879999999999999999999999


Q ss_pred             CCCCCHHHHHHHHCCC-CCCHHHHHHCCCCCCCCCHH
Q ss_conf             1499988998873498-23788998779806238989
Q gi|254780747|r  196 SRNIPYDKTLVLSDGR-IWTGAEAKKVGLIDVVGGQE  231 (293)
Q Consensus       196 ~R~~~~~~~~~~~~g~-~~~~~~A~~~GLvD~ig~~~  231 (293)
T Consensus       155 ~Tg~~~~~I~~~~~rd~~msa~EA~~yGliD~Il~~r  191 (196)
T PRK12551        155 RTGQPLERIQEDTDRDFFMSPSEAVEYGLIDLVIDKR  191 (196)
T ss_pred             HHCCCHHHHHHHHCCCCCCCHHHHHHCCCCCEEECCC
T ss_conf             8795999999873578606799999829987860789