HHsearch alignment for GI: 254780747 and conserved domain: TIGR02280
>TIGR02280 PaaB1 phenylacetate degradation probable enoyl-CoA hydratase paaB; InterPro: IPR011968 This family of proteins are found within apparent operons for the degradation of phenylacetic acid . These proteins contain the enoyl-CoA hydratase domain. This activity is consistent with current hypotheses for the degradation pathway which involve the ligation of phenylacetate with coenzyme A (paaF), hydroxylation (paaGHIJK), ring-opening (paaN) and degradation of the resulting fatty acid-like compound to a Krebs cycle intermediate (paaABCDE)..
Probab=97.45 E-value=0.00057 Score=44.94 Aligned_cols=162 Identities=31% Similarity=0.417 Sum_probs=110.6
Q ss_pred CCEEEEEEEEEEEC--CH-----HHHHHHHHHHHCCCCCCEEEEE-----------CC----CCCCCHH----HHHHHHH
Q ss_conf 87289999766623--86-----9999999998618998799997-----------58----8888889----9999999
Q gi|254780747|r 35 SPHVARIAIRGQIE--DS-----QELIERIERISRDDSATALIVS-----------LS----SPGGSAY----AGEAIFR 88 (293)
Q Consensus 35 ~~~i~~i~i~G~I~--~~-----~~l~~~l~~a~~d~~ik~ivL~-----------i~----SpGG~~~----~~~~i~~ 88 (293)
T Consensus 6 ~~GV~~LTLNRPd~LNSF~~~MH~~l~~aL~~ver~~~~R~l~LTGAGRGFcAGQDL~dr~v~~~G~~pDLG~~ve~fYn 85 (259)
T TIGR02280 6 EKGVARLTLNRPDKLNSFTAEMHAELREALERVERDDDARALLLTGAGRGFCAGQDLSDRNVTPGGAAPDLGETVEKFYN 85 (259)
T ss_pred HCCEEEEECCCCCHHCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHC
T ss_conf 25601431377001024008899999999866401575458887388874344655544678874225853221777507
Q ss_pred -HHHHHCC-CCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCEEEEECCCCCCCCC
Q ss_conf -9998414-78679960332332232100011100013013534555653021024567774204225531552112346
Q gi|254780747|r 89 -AIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSP 166 (293)
Q Consensus 89 -ai~~~k~-~kpvva~~~~~~~S~~Y~iAs~ad~I~a~p~s~vGsiGv~~~~~~~~~ll~k~gi~~~~~~~g~~K~~~~p 166 (293)
T Consensus 86 PLvRrL~~Lp~PVv~AVNGVAAGAGAnLALAcDIvlAa~sA~------------FiqAF~klGL~PD--------sGGTw 145 (259)
T TIGR02280 86 PLVRRLRALPKPVVCAVNGVAAGAGANLALACDIVLAARSAK------------FIQAFAKLGLIPD--------SGGTW 145 (259)
T ss_pred HHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHCCCCC--------CCCHH
T ss_conf 489999726997798535103447788887511999987557------------9988875246779--------85000
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCHHHHHHCCCCCCCCCHH-HHHHHHHHHCC
Q ss_conf 66789999887777766666778999985149998899887349823788998779806238989-99999997418
Q gi|254780747|r 167 FSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQE-EVWQSLYALGV 242 (293)
Q Consensus 167 ~~~~s~e~~~~~~~~l~~~~~~f~~~Va~~R~~~~~~~~~~~~g~~~~~~~A~~~GLvD~ig~~~-~a~~~l~~~~~ 242 (293)
T Consensus 146 ~LP---------------------r~vG~ARA----~GLAl-lG~~LdA~~A~~WGLIW~~v~D~k~L~~~~~~LA~ 196 (259)
T TIGR02280 146 LLP---------------------RLVGRARA----MGLAL-LGEKLDARTAAEWGLIWQVVDDAKALMDEAQALAA 196 (259)
T ss_pred HHH---------------------HHHHHHHH----HHHHH-HCCCCCHHHHHHCCCEEEEEHHHHHHHHHHHHHHH
T ss_conf 466---------------------89999999----99885-04846868897438644220057899999999999