HHsearch alignment for GI: 254780747 and conserved domain: cd07020
>cd07020 Clp_protease_NfeD_1 Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease. Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentially c
Probab=99.85 E-value=1.9e-20 Score=148.67 Aligned_cols=169 Identities=26% Similarity=0.304 Sum_probs=129.9
Q ss_pred EEEEEEEEEECCH--HHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEC---CCCCCCCC
Q ss_conf 8999976662386--999999999861899879999758888888999999999998414786799603---32332232
Q gi|254780747|r 38 VARIAIRGQIEDS--QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVH---EMAASAGY 112 (293)
Q Consensus 38 i~~i~i~G~I~~~--~~l~~~l~~a~~d~~ik~ivL~i~SpGG~~~~~~~i~~ai~~~k~~kpvva~~~---~~~~S~~Y 112 (293)
T Consensus 1 V~vi~i~g~I~~~~~~~l~r~l~~A~~-~~a~avvl~idTpGG~v~~~~~I~~~i~--~s~vpvi~~V~p~G~~A~SAGa 77 (187)
T cd07020 1 VYVLEINGAITPATADYLERAIDQAEE-GGADALIIELDTPGGLLDSTREIVQAIL--ASPVPVVVYVYPSGARAASAGT 77 (187)
T ss_pred CEEEEECCEECHHHHHHHHHHHHHHHH-CCCCEEEEEEECCCCHHHHHHHHHHHHH--CCCCCEEEEECCCCCCHHHHHH
T ss_conf 989996146768899999999999986-8998999998589607899999999998--1899989998789760771899
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 10001110001301353455565302102456777420422553155211234666789999887777766666778999
Q gi|254780747|r 113 LISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRL 192 (293)
Q Consensus 113 ~iAs~ad~I~a~p~s~vGsiGv~~~~~~~~~ll~k~gi~~~~~~~g~~K~~~~p~~~~s~e~~~~~~~~l~~~~~~f~~~ 192 (293)
T Consensus 78 ~I~~a~~~~~MaPgt~iGaA~PV~~~~---------------------------~~~~~~----~~~~K~~n~~~a~~rs 126 (187)
T cd07020 78 YILLAAHIAAMAPGTNIGAAHPVAIGG---------------------------GGGSDP----VMEKKILNDAVAYIRS 126 (187)
T ss_pred HHHHHCCHHHCCCCCCEECCCCEECCC---------------------------CCCCCH----HHHHHHHHHHHHHHHH
T ss_conf 999836075478987500144120689---------------------------887605----7899999999999999
Q ss_pred HHHCCCCCHHHHHH-HHCCCCCCHHHHHHCCCCCCCC-CHHHHHHHHHHH
Q ss_conf 98514999889988-7349823788998779806238-989999999974
Q gi|254780747|r 193 VSESRNIPYDKTLV-LSDGRIWTGAEAKKVGLIDVVG-GQEEVWQSLYAL 240 (293)
Q Consensus 193 Va~~R~~~~~~~~~-~~~g~~~~~~~A~~~GLvD~ig-~~~~a~~~l~~~ 240 (293)
T Consensus 127 ~Ae~rGRn~~~Ae~~V~e~~~lta~eAl~~gviD~ia~~~~eLL~~l~G~ 176 (187)
T cd07020 127 LAELRGRNAEWAEKAVRESLSLTAEEALKLGVIDLIAADLNELLKKLDGR 176 (187)
T ss_pred HHHHCCCCHHHHHHHHHHCCCCCHHHHHHCCCCEEEECCHHHHHHHCCCC
T ss_conf 99983999899999876147668999997698178849999999876891