HHsearch alignment for GI: 254780747 and conserved domain: cd07021
>cd07021 Clp_protease_NfeD_like Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease. Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentiall
Probab=99.87 E-value=1.9e-21 Score=154.99 Aligned_cols=160 Identities=25% Similarity=0.315 Sum_probs=124.7
Q ss_pred EEEEEEEEEECCH--HHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCC
Q ss_conf 8999976662386--99999999986189987999975888888899999999999841478679960332332232100
Q gi|254780747|r 38 VARIAIRGQIEDS--QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLIS 115 (293)
Q Consensus 38 i~~i~i~G~I~~~--~~l~~~l~~a~~d~~ik~ivL~i~SpGG~~~~~~~i~~ai~~~k~~kpvva~~~~~~~S~~Y~iA 115 (293)
T Consensus 1 Vyvi~i~g~I~~~~~~~l~r~l~~A~~-~~a~~ivl~idTpGG~v~~~~~I~~~I~~~--~~pvv~~V~~~AaSAG~~Ia 77 (178)
T cd07021 1 VYVIPIEGEIDPGLAAFVERALKEAKE-EGADAVVLDIDTPGGRVDSALEIVDLILNS--PIPTIAYVNDRAASAGALIA 77 (178)
T ss_pred CEEEEECCEECHHHHHHHHHHHHHHHH-CCCCEEEEEEECCCCCHHHHHHHHHHHHHC--CCCEEEEECCCHHHHHHHHH
T ss_conf 989997356868899999999999996-899789999979998689999999999848--99999999992077999999
Q ss_pred CCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 01110001301353455565302102456777420422553155211234666789999887777766666778999985
Q gi|254780747|r 116 CASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSE 195 (293)
Q Consensus 116 s~ad~I~a~p~s~vGsiGv~~~~~~~~~ll~k~gi~~~~~~~g~~K~~~~p~~~~s~e~~~~~~~~l~~~~~~f~~~Va~ 195 (293)
T Consensus 78 ~aad~i~m~p~t~iG~a~Pv~~~g-------------------------~---~-------~~~~K~~s~~~a~~r~~Ae 122 (178)
T cd07021 78 LAADEIYMAPGATIGAAEPIPGDG-------------------------N---G-------AADEKVQSYWRAKMRAAAE 122 (178)
T ss_pred HHCCEEEECCCCCEECCCCCCCCC-------------------------C---C-------HHHHHHHHHHHHHHHHHHH
T ss_conf 846700488998530154255888-------------------------6---3-------1467899999999999999
Q ss_pred CCCCCHHHHHHHHCCC--------------CCCHHHHHHCCCCCCCCC-HHHHHH
Q ss_conf 1499988998873498--------------237889987798062389-899999
Q gi|254780747|r 196 SRNIPYDKTLVLSDGR--------------IWTGAEAKKVGLIDVVGG-QEEVWQ 235 (293)
Q Consensus 196 ~R~~~~~~~~~~~~g~--------------~~~~~~A~~~GLvD~ig~-~~~a~~ 235 (293)
T Consensus 123 ~~GRn~~~aeamV~~~~~v~~~~~~~g~~Ltlta~EAl~~g~~d~ia~~~~~Ll~ 177 (178)
T cd07021 123 KKGRDPDIAEAMVDKDIEVPGVGIKGGELLTLTADEALKVGYAEGIAGSLDELLV 177 (178)
T ss_pred HCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHCCCCEEEECCHHHHHH
T ss_conf 8399899999997514444211233455443589999973982788689999951