RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddB 21,608 sequences; 5,994,473 total letters Searching..................................................done Query= gi|254780747|ref|YP_003065160.1| putative protease IV transmembrane protein [Candidatus Liberibacter asiaticus str. psy62] (293 letters) >gnl|CDD|129789 TIGR00706, SppA_dom, signal peptide peptidase SppA, 36K type. The member of this family from Bacillus subtilis was shown to have properties consistent with a role in degrading signal peptides after cleavage from precursor proteins, although it was not demonstrated conclusively. Length = 207 Score = 167 bits (424), Expect = 4e-42 Identities = 71/195 (36%), Positives = 123/195 (63%), Gaps = 1/195 (0%) Query: 38 VARIAIRGQIEDSQE-LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNR 96 +A + + G I S E ++I+RI D S AL++ ++SPGG+ A E I+ ++K+K + Sbjct: 2 IAILPVSGAIAVSPEDFDKKIKRIKDDKSIKALLLRINSPGGTVVASEEIYEKLKKLKAK 61 Query: 97 KPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVK 156 KPV+ + +AAS GY I+ A++ IVA ++ GSIGV+ Q V+ +KLG+ + +K Sbjct: 62 KPVVASMGGVAASGGYYIAMAADEIVANPGTITGSIGVILQGANVEKLYEKLGIEFEVIK 121 Query: 157 SSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGA 216 S K SP E+ P+ ++Q++V+ SY FV++V++ RN+P + +DGR++TG Sbjct: 122 SGEYKDIGSPTRELTPEERDILQNLVNESYEQFVQVVAKGRNLPVEDVKKFADGRVFTGR 181 Query: 217 EAKKVGLIDVVGGQE 231 +A K+ L+D +G ++ Sbjct: 182 QALKLRLVDKLGTED 196 >gnl|CDD|162004 TIGR00705, SppA_67K, signal peptide peptidase SppA, 67K type. E. coli SohB, which is most closely homologous to the C-terminal duplication of SppA, is predicted to perform a similar function of small peptide degradation, but in the periplasm. Many prokaryotes have a single SppA/SohB homolog that may perform the function of either or both. Length = 584 Score = 138 bits (348), Expect = 2e-33 Identities = 66/210 (31%), Positives = 112/210 (53%), Gaps = 11/210 (5%) Query: 33 DNSPHVARIAIRGQI---EDSQELI--ERIERISR----DDSATALIVSLSSPGGSAYAG 83 D + + + G I D++ + + + R D A+++ ++SPGGS +A Sbjct: 305 DVQDKIGIVHLEGPIADGRDTEGNTGGDTVAALLRVARSDPDIKAVVLRINSPGGSVFAS 364 Query: 84 EAIFRAIQKVKNR-KPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142 E I R + + + R KPVI + MAAS GY I+ A++ IVA+ ++ GSIGV P + Sbjct: 365 EIIRRELARAQARGKPVIVSMGAMAASGGYWIASAADYIVASPNTITGSIGVFSVLPTFE 424 Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202 LD++GV + V + + A S + + +MQ V++ Y F+ +VS RN+ Sbjct: 425 NSLDRIGVHVDGVSTHEL-ANVSLLRPLTAEDQAIMQLSVEAGYRRFLSVVSAGRNLTPT 483 Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEE 232 + ++ GR+WTG +A GL+D +GG +E Sbjct: 484 QVDKVAQGRVWTGEDAVSNGLVDALGGLDE 513 Score = 51.4 bits (123), Expect = 3e-07 Identities = 42/207 (20%), Positives = 78/207 (37%), Gaps = 14/207 (6%) Query: 57 IERISRDDSATALIVSLSSPGGSAYAG-EAIFRAIQKVKNRKPVITEVHEMAASAGYLIS 115 I + + D L+ LS+ G I A+ + K+ + + Y ++ Sbjct: 85 IRQAADDRRIEGLVFDLSNFSGWDSPHLVEIGSALSEFKDSGKPVYAYGTNYSQGQYYLA 144 Query: 116 CASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFS--EVNPK 173 ++ I+ V G + + K LDKLGV + K PFS +++P+ Sbjct: 145 SFADEIILNPMGSVDLHGFYTETLFYKGMLDKLGVRWHXFRVGTYKGAVEPFSRKDMSPE 204 Query: 174 AVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRI-----WTGAEAKKV---GLID 225 A + Q + + ++ VS +R IP + + G + G A+ L+ Sbjct: 205 ARRNYQRWLGELWQNYLSSVSRNRAIPVQQLAPYAQGLLELLQKLNGDGARYALAEKLVT 264 Query: 226 VVGGQEEVWQSLYAL---GVDQSIRKI 249 V E ++L L D++ I Sbjct: 265 AVCSYAEAGKALKFLFEDDYDKAKNFI 291 >gnl|CDD|182860 PRK10949, PRK10949, protease 4; Provisional. Length = 618 Score = 109 bits (274), Expect = 1e-24 Identities = 70/212 (33%), Positives = 106/212 (50%), Gaps = 23/212 (10%) Query: 33 DNSPHVARIAIRGQIEDSQE---------LIERIERISRDDSATALIVSLSSPGGSAYAG 83 D +A I G I D +E +I D A+++ ++SPGGS A Sbjct: 323 DTGGSIAVIFANGAIMDGEETPGNVGGDTTAAQIRDARLDPKVKAIVLRVNSPGGSVTAS 382 Query: 84 EAIFRAIQKVKNR-KPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142 E I + + KPV+ + MAAS GY IS +N IVA+ ++L GSIG+ V+ Sbjct: 383 EVIRAELAAARAAGKPVVVSMGGMAASGGYWISTPANYIVASPSTLTGSIGIFGVINTVE 442 Query: 143 PFLDKLGVSIKSVKSSPM------KAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSES 196 LD +GV V +SP+ KA P F QMMQ +++ Y F+ LV++S Sbjct: 443 NSLDSIGVHTDGVSTSPLADVSITKALPPEFQ-------QMMQLSIENGYKRFITLVADS 495 Query: 197 RNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVG 228 R+ ++ ++ G +WTG +AK GL+D +G Sbjct: 496 RHKTPEQIDKIAQGHVWTGQDAKANGLVDSLG 527 >gnl|CDD|183309 PRK11778, PRK11778, putative inner membrane peptidase; Provisional. Length = 330 Score = 59.8 bits (146), Expect = 7e-10 Identities = 47/165 (28%), Positives = 82/165 (49%), Gaps = 13/165 (7%) Query: 70 IVSLSSPGG--SAYAGEAIFRAIQKVKNRK---PVITEVHEMAASAGYLISCASNIIVAA 124 ++ L SPGG Y G A A Q + R P+ V ++AAS GY+++C ++ I+AA Sbjct: 127 LLRLESPGGVVHGY-GLA---ASQLQRLRDAGIPLTVAVDKVAASGGYMMACVADKIIAA 182 Query: 125 ETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDS 184 ++VGSIGV+ Q P L K + ++ + K + F E + + ++ ++ Sbjct: 183 PFAIVGSIGVVAQIPNFHRLLKKHDIDVELHTAGEYKRTLTLFGENTEEGREKFREELEE 242 Query: 185 SYHWFVRLVSESR-NIPYDKTLVLSDGRIWTGAEAKKVGLIDVVG 228 ++ F V R + DK + G W G +A ++GL+D + Sbjct: 243 THQLFKDFVQRYRPQLDIDKV---ATGEHWYGQQALELGLVDEIQ 284 >gnl|CDD|183589 PRK12553, PRK12553, ATP-dependent Clp protease proteolytic subunit; Reviewed. Length = 207 Score = 43.0 bits (102), Expect = 9e-05 Identities = 30/85 (35%), Positives = 43/85 (50%), Gaps = 14/85 (16%) Query: 40 RIAIRGQIED-------SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQK 92 I + GQ++D +Q L+ +E I D T I +SPGGS AG+AI+ IQ Sbjct: 37 IIFLGGQVDDASANDVMAQLLV--LESIDPDRDITLYI---NSPGGSVTAGDAIYDTIQF 91 Query: 93 VKNRKPVITEVHEMAASAGYLISCA 117 ++ V T AASAG ++ A Sbjct: 92 IRP--DVQTVCTGQAASAGAVLLAA 114 >gnl|CDD|184720 PRK14512, PRK14512, ATP-dependent Clp protease proteolytic subunit; Provisional. Length = 197 Score = 38.6 bits (90), Expect = 0.002 Identities = 28/82 (34%), Positives = 39/82 (47%), Gaps = 8/82 (9%) Query: 41 IAIRGQIEDSQELIERIER----ISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNR 96 I I G+I +++L E + + DS + V + S GG AG AIF I+ VK Sbjct: 26 IVIAGEI--NKDLSELFQEKILLLEALDSKKPIFVYIDSEGGDIDAGFAIFNMIRFVK-- 81 Query: 97 KPVITEVHEMAASAGYLISCAS 118 V T + ASA LI A+ Sbjct: 82 PKVFTIGVGLVASAAALIFLAA 103 >gnl|CDD|184722 PRK14514, PRK14514, ATP-dependent Clp protease proteolytic subunit; Provisional. Length = 221 Score = 37.2 bits (86), Expect = 0.006 Identities = 42/158 (26%), Positives = 69/158 (43%), Gaps = 31/158 (19%) Query: 71 VSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVG 130 + ++SPGGS YAG I+ +Q + + V T MAAS AS ++VA G Sbjct: 89 IYINSPGGSVYAGLGIYDTMQFISS--DVATICTGMAASM------ASVLLVA------G 134 Query: 131 SIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFV 190 + G P+ + + + P+ S++ A + +Q + Y Sbjct: 135 TKGKRSALPHSRVMIHQ-----------PLGGAQGQASDIEITARE-IQKLKKELY---- 178 Query: 191 RLVSESRNIPYDKTLVLSDGRIW-TGAEAKKVGLIDVV 227 ++++ P+DK SD W T EAK+ G+ID V Sbjct: 179 TIIADHSGTPFDKVWADSDRDYWMTAQEAKEYGMIDEV 216 >gnl|CDD|181249 PRK08139, PRK08139, enoyl-CoA hydratase; Validated. Length = 266 Score = 36.8 bits (86), Expect = 0.007 Identities = 29/110 (26%), Positives = 46/110 (41%), Gaps = 29/110 (26%) Query: 52 ELIERIERISRDDSATALIVSLSSPGGSAYAG---------------EAIFR-------A 89 L ++ I+ D S V L++ G + AG A+F A Sbjct: 42 ALQAALDAIAADPSVRV--VVLAAAGKAFCAGHDLKEMRAARGLAYFRALFARCSRVMQA 99 Query: 90 IQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGV---LF 136 I + +PVI VH +A +AG + + ++ VAA+T+ GV LF Sbjct: 100 IVAL--PQPVIARVHGIATAAGCQLVASCDLAVAADTARFAVPGVNIGLF 147 >gnl|CDD|162806 TIGR02322, phosphon_PhnN, phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP. Length = 179 Score = 36.2 bits (84), Expect = 0.009 Identities = 28/91 (30%), Positives = 46/91 (50%), Gaps = 15/91 (16%) Query: 4 VLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHV--ARIAIRGQIEDSQELIERIERIS 61 VL + + RY L +V +T SP V R+A RG+ E +E+ ER+ R + Sbjct: 101 VLPEARQRYPNLLVVNITA------------SPDVLAQRLAARGR-ESREEIEERLARSA 147 Query: 62 RDDSATALIVSLSSPGGSAYAGEAIFRAIQK 92 R +A A + ++ + G AGE + R ++K Sbjct: 148 RFAAAPADVTTIDNSGSLEVAGETLLRLLRK 178 >gnl|CDD|178955 PRK00277, clpP, ATP-dependent Clp protease proteolytic subunit; Reviewed. Length = 200 Score = 35.5 bits (83), Expect = 0.015 Identities = 18/43 (41%), Positives = 22/43 (51%), Gaps = 2/43 (4%) Query: 75 SPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCA 117 SPGGS AG AI+ +Q +K V T AAS G + A Sbjct: 70 SPGGSVTAGLAIYDTMQFIKP--DVSTICIGQAASMGAFLLAA 110 >gnl|CDD|139060 PRK12551, PRK12551, ATP-dependent Clp protease proteolytic subunit; Reviewed. Length = 196 Score = 34.8 bits (80), Expect = 0.029 Identities = 21/55 (38%), Positives = 29/55 (52%), Gaps = 2/55 (3%) Query: 63 DDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCA 117 +D + + ++SPGGS Y G IF +Q VK V T +AAS G + CA Sbjct: 52 EDPEKDIYLYINSPGGSVYDGLGIFDTMQHVK--PDVHTVCVGLAASMGAFLLCA 104 >gnl|CDD|129584 TIGR00493, clpP, ATP-dependent Clp protease, proteolytic subunit ClpP. This model for the proteolytic subunit ClpP has been rebuilt to a higher stringency. In every bacterial genome with the ClpXP machine, a ClpP protein will be found that scores with this model. In general, this ClpP member will be encoded adjacent to the clpX gene, as were all examples used in the seed alignment. A large fraction of genomes have one or more additional ClpP paralogs, sometimes encoded nearby and sometimes elsewhere. The stringency of the trusted cutoff used here excludes the more divergent ClpP paralogs from being called authentic ClpP by this model. Length = 191 Score = 34.4 bits (79), Expect = 0.035 Identities = 24/79 (30%), Positives = 42/79 (53%), Gaps = 5/79 (6%) Query: 41 IAIRGQIEDS--QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKP 98 I + G++ DS ++ ++ + +D + + ++SPGGS AG AI+ +Q +K Sbjct: 29 IFLSGEVNDSVANLIVAQLLFLEAEDPEKDIYLYINSPGGSITAGLAIYDTMQFIK--PD 86 Query: 99 VITEVHEMAASAG-YLISC 116 V T AAS G +L+S Sbjct: 87 VSTICIGQAASMGAFLLSA 105 >gnl|CDD|131333 TIGR02280, PaaB1, phenylacetate degradation probable enoyl-CoA hydratase paaB. This family of proteins are found within apparent operons for the degradation of phenylacetic acid. These proteins contain the enoyl-CoA hydratase domain as detected by pfam00378. This activity is consistent with current hypotheses for the degradation pathway which involve the ligation of phenylacetate with coenzyme A (paaF), hydroxylation (paaGHIJK), ring-opening (paaN) and degradation of the resulting fatty acid-like compound to a Krebs cycle intermediate (paaABCDE). Length = 256 Score = 34.1 bits (78), Expect = 0.047 Identities = 31/96 (32%), Positives = 49/96 (51%), Gaps = 21/96 (21%) Query: 52 ELIERIERISRDDSATALIVS-----------LS----SPGGSAYAGEAIFRAIQKVKNR 96 EL E +ER+ RDD A AL+++ LS +PGG+ G I + R Sbjct: 30 ELREALERVERDD-ARALMLTGAGRGFCAGQDLSERNPTPGGAPDLGRTIETFYNPLVRR 88 Query: 97 -----KPVITEVHEMAASAGYLISCASNIIVAAETS 127 PV+ V+ +AA AG ++ A +I++AAE++ Sbjct: 89 LRALPLPVVCAVNGVAAGAGANLALACDIVLAAESA 124 >gnl|CDD|181122 PRK07799, PRK07799, enoyl-CoA hydratase; Provisional. Length = 263 Score = 32.4 bits (74), Expect = 0.14 Identities = 19/36 (52%), Positives = 22/36 (61%), Gaps = 4/36 (11%) Query: 190 VRLVSESRNIPYDKTL-VLSDGRIWTGAEAKKVGLI 224 VRLV R IPY +L GR T AEAK++GLI Sbjct: 150 VRLV---RQIPYTVACDLLLTGRHITAAEAKEIGLI 182 >gnl|CDD|181174 PRK07938, PRK07938, enoyl-CoA hydratase; Provisional. Length = 249 Score = 31.9 bits (73), Expect = 0.19 Identities = 20/70 (28%), Positives = 30/70 (42%), Gaps = 11/70 (15%) Query: 57 IERISRDDSATALIVSLSSPGGSAYAGE-AIFRAIQKVKNRKPVITEVHEMAASAGYLIS 115 I+ + TALI A G A FRA+ + PVI VH G + Sbjct: 64 IKELQATPGFTALI--------DANRGCFAAFRAVYE--CAVPVIAAVHGFCLGGGIGLV 113 Query: 116 CASNIIVAAE 125 +++IVA++ Sbjct: 114 GNADVIVASD 123 >gnl|CDD|168580 PRK06495, PRK06495, enoyl-CoA hydratase; Provisional. Length = 257 Score = 31.6 bits (72), Expect = 0.23 Identities = 14/34 (41%), Positives = 21/34 (61%) Query: 97 KPVITEVHEMAASAGYLISCASNIIVAAETSLVG 130 KPVI V+ A AG + + +IIVA+E ++ G Sbjct: 98 KPVIAAVNGPALGAGLGLVASCDIIVASENAVFG 131 >gnl|CDD|181356 PRK08290, PRK08290, enoyl-CoA hydratase; Provisional. Length = 288 Score = 31.5 bits (72), Expect = 0.24 Identities = 8/30 (26%), Positives = 17/30 (56%) Query: 96 RKPVITEVHEMAASAGYLISCASNIIVAAE 125 KP I +V + G +++ ++IVA++ Sbjct: 118 PKPTIAQVQGACIAGGLMLAWVCDLIVASD 147 >gnl|CDD|184721 PRK14513, PRK14513, ATP-dependent Clp protease proteolytic subunit; Provisional. Length = 201 Score = 31.1 bits (70), Expect = 0.35 Identities = 38/156 (24%), Positives = 61/156 (39%), Gaps = 31/156 (19%) Query: 73 LSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSI 132 ++ PGG YAG AI+ ++ +K PV T +A S G ++ A G Sbjct: 64 INCPGGEVYAGLAIYDTMRYIK--APVSTICVGIAMSMGSVLLMA------------GDK 109 Query: 133 GVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRL 192 G P + + + + +P EV K V ++D + YH Sbjct: 110 GKRMALPNSRIMIHQGSAGFRG---------NTPDLEVQAKEVLFLRDTLVDIYH----- 155 Query: 193 VSESRNIPYDKTLV-LSDGRIWTGAEAKKVGLIDVV 227 ++P++K L + + EAK GLID V Sbjct: 156 --RHTDLPHEKLLRDMERDYFMSPEEAKAYGLIDSV 189 >gnl|CDD|181723 PRK09245, PRK09245, enoyl-CoA hydratase; Provisional. Length = 266 Score = 31.1 bits (71), Expect = 0.35 Identities = 27/117 (23%), Positives = 44/117 (37%), Gaps = 26/117 (22%) Query: 34 NSPHVARIAIRGQIEDSQELIERIERISRDDSATALIVSLSSPGGSA-------YAGEAI 86 N P R A+ + L+ I+ D S A+I++ + S+ A Sbjct: 19 NRPE-TRNALSDN-DAVDALVAACAAINADRSVRAVILTGAGTAFSSGGNVKDMRARVGA 76 Query: 87 F------------RAIQKVKN-----RKPVITEVHEMAASAGYLISCASNIIVAAET 126 F IQ++ PVI V+ A AG ++C +I +A+ET Sbjct: 77 FGGSPADIRQGYRHGIQRIPLALYNLEVPVIAAVNGPAIGAGCDLACMCDIRIASET 133 >gnl|CDD|165533 PHA03276, PHA03276, envelope glycoprotein K; Provisional. Length = 337 Score = 30.6 bits (69), Expect = 0.42 Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 10/44 (22%) Query: 99 VITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142 V++ H+M A A YL++ A ++ + VL +YPY K Sbjct: 147 VVSPAHKMVAPATYLLNYAGRVVSS----------VLLRYPYTK 180 >gnl|CDD|181250 PRK08140, PRK08140, enoyl-CoA hydratase; Provisional. Length = 262 Score = 30.7 bits (70), Expect = 0.43 Identities = 28/100 (28%), Positives = 52/100 (52%), Gaps = 26/100 (26%) Query: 51 QELIERIERISRDDSATALIVS-----------LS----SPGGSAY-AGEAI-------F 87 +EL E ++++ DD A AL+++ L+ +PGG+ GE+I Sbjct: 34 RELREALDQV-EDDGARALLLTGAGRGFCAGQDLADRDVTPGGAMPDLGESIETFYNPLV 92 Query: 88 RAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETS 127 R ++ + PVI V+ +AA AG ++ A +I++AA ++ Sbjct: 93 RRLRAL--PLPVIAAVNGVAAGAGANLALACDIVLAARSA 130 >gnl|CDD|180591 PRK06494, PRK06494, enoyl-CoA hydratase; Provisional. Length = 259 Score = 30.8 bits (70), Expect = 0.44 Identities = 12/31 (38%), Positives = 21/31 (67%) Query: 97 KPVITEVHEMAASAGYLISCASNIIVAAETS 127 KP+I V+ +A G+ ++ A ++IVAAE + Sbjct: 95 KPIIAAVNGVAMGGGFELALACDLIVAAENA 125 >gnl|CDD|178476 PLN02888, PLN02888, enoyl-CoA hydratase. Length = 265 Score = 30.1 bits (68), Expect = 0.63 Identities = 30/116 (25%), Positives = 52/116 (44%), Gaps = 21/116 (18%) Query: 31 VEDNSPHVARIAI-RGQIEDS------QELIERIERISRDDSATALIVSLSSP----GGS 79 V + +A I I R + ++ EL +R+ DDS +I++ S G Sbjct: 13 VPKSRNGIATITINRPKALNALTRPMMVELAAAFKRLDEDDSVKVIILTGSGRAFCSGVD 72 Query: 80 AYAGEAIFRA----------IQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAE 125 A E +F+ Q + RKP+I ++ A +AG+ I+ A +I+VA+ Sbjct: 73 LTAAEEVFKGDVKDVETDPVAQMERCRKPIIGAINGFAITAGFEIALACDILVASR 128 >gnl|CDD|181009 PRK07511, PRK07511, enoyl-CoA hydratase; Provisional. Length = 260 Score = 30.0 bits (68), Expect = 0.69 Identities = 13/29 (44%), Positives = 19/29 (65%) Query: 97 KPVITEVHEMAASAGYLISCASNIIVAAE 125 KPVI V AA AG+ ++ A +++VAA Sbjct: 99 KPVIAAVEGAAAGAGFSLALACDLLVAAR 127 >gnl|CDD|180658 PRK06688, PRK06688, enoyl-CoA hydratase; Provisional. Length = 259 Score = 30.2 bits (69), Expect = 0.72 Identities = 15/96 (15%), Positives = 38/96 (39%), Gaps = 16/96 (16%) Query: 51 QELIERIERISRDDSATALIVS---------------LSSPGGSAYAGEAIFRAIQKVKN 95 Q L + +E + D + ++++ +P + R ++ + Sbjct: 35 QALADALEAAATDPAVRVVVLTGAGRAFSAGGDIKDFPKAPPKPPDELAPVNRFLRAIAA 94 Query: 96 -RKPVITEVHEMAASAGYLISCASNIIVAAETSLVG 130 KPV+ V+ A G ++ A +++ A+E++ Sbjct: 95 LPKPVVAAVNGPAVGVGVSLALACDLVYASESAKFS 130 >gnl|CDD|181329 PRK08258, PRK08258, enoyl-CoA hydratase; Provisional. Length = 277 Score = 29.9 bits (68), Expect = 0.81 Identities = 8/31 (25%), Positives = 19/31 (61%) Query: 97 KPVITEVHEMAASAGYLISCASNIIVAAETS 127 +P+I V + A AG +++ AS++ + ++ Sbjct: 114 QPIIAAVDGVCAGAGAILAMASDLRLGTPSA 144 >gnl|CDD|178753 PLN03214, PLN03214, probable enoyl-CoA hydratase/isomerase; Provisional. Length = 278 Score = 29.5 bits (66), Expect = 1.2 Identities = 14/37 (37%), Positives = 18/37 (48%) Query: 191 RLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVV 227 RL +L GR+ AEAK++GLID V Sbjct: 157 RLFMGRVIDRKVAESLLLRGRLVRPAEAKQLGLIDEV 193 >gnl|CDD|180336 PRK05981, PRK05981, enoyl-CoA hydratase; Provisional. Length = 266 Score = 29.3 bits (66), Expect = 1.2 Identities = 13/58 (22%), Positives = 27/58 (46%), Gaps = 6/58 (10%) Query: 74 SSPGGSAYAGEAIF----RAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETS 127 S G + A E + R ++ + P++T V+ AA G + ++I+ A ++ Sbjct: 79 DSGGDAGAALETAYHPFLRRLRNLP--CPIVTAVNGPAAGVGMSFALMGDLILCARSA 134 >gnl|CDD|180270 PRK05809, PRK05809, 3-hydroxybutyryl-CoA dehydratase; Validated. Length = 260 Score = 29.3 bits (66), Expect = 1.2 Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 2/48 (4%) Query: 83 GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVG 130 G +FR ++ + KPVI ++ A G +S A +I +A+E + G Sbjct: 86 GNKVFRKLENLD--KPVIAAINGFALGGGCELSMACDIRIASEKAKFG 131 >gnl|CDD|180010 PRK05318, PRK05318, deoxyguanosinetriphosphate triphosphohydrolase-like protein; Provisional. Length = 432 Score = 29.1 bits (66), Expect = 1.3 Identities = 7/19 (36%), Positives = 8/19 (42%) Query: 248 KIKDWNPPKNYWFCDLKNL 266 K DW PPK + D Sbjct: 185 KASDWKPPKGIFDDDQDIF 203 >gnl|CDD|179599 PRK03580, PRK03580, carnitinyl-CoA dehydratase; Provisional. Length = 261 Score = 28.9 bits (65), Expect = 1.8 Identities = 16/56 (28%), Positives = 28/56 (50%), Gaps = 9/56 (16%) Query: 79 SAYAGEAI--------FRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAE 125 +A GEA F + ++ + KPVI V+ A G+ ++ A++ IV A+ Sbjct: 68 AAAEGEAPDADFGPGGFAGLTEIFDLDKPVIAAVNGYAFGGGFELALAADFIVCAD 123 >gnl|CDD|162130 TIGR00955, 3a01204, The Eye Pigment Precursor Transporter (EPP) Family protein. Length = 617 Score = 28.9 bits (65), Expect = 1.8 Identities = 19/47 (40%), Positives = 27/47 (57%), Gaps = 9/47 (19%) Query: 99 VITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFL 145 ++T V +A S GYLISCA + TS+ ++G P+V PFL Sbjct: 478 LVTLVANVATSFGYLISCAFS-----STSMALTVGP----PFVIPFL 515 >gnl|CDD|180298 PRK05870, PRK05870, enoyl-CoA hydratase; Provisional. Length = 249 Score = 28.5 bits (64), Expect = 2.0 Identities = 29/129 (22%), Positives = 45/129 (34%), Gaps = 30/129 (23%) Query: 27 WSSHVEDNSPHVARIAI-----RGQI--EDSQELIERIERISRDDSATALIVS------- 72 + D VA I + R + E S +L + D AL+V+ Sbjct: 2 MDPVLLDVDDGVALITVNDPDRRNAVTAEMSAQLRAAVAAAEADPDVHALVVTGAGKAFC 61 Query: 73 ----LSS----PGGSAYAG-EAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIV 122 L++ PG A G I+ V + P I V+ A AG N+ + Sbjct: 62 AGADLTALGAAPGRPAEDGLRRIYDGFLAVASCPLPTIAAVNGAAVGAGL------NLAL 115 Query: 123 AAETSLVGS 131 AA+ + G Sbjct: 116 AADVRIAGP 124 >gnl|CDD|181070 PRK07658, PRK07658, enoyl-CoA hydratase; Provisional. Length = 257 Score = 28.4 bits (64), Expect = 2.1 Identities = 28/133 (21%), Positives = 50/133 (37%), Gaps = 37/133 (27%) Query: 27 WSSHVEDNSPHVARIAI---------RGQIEDSQELIERIERISRDDSATALIVS----- 72 S VED HVA I + + EL E ++++ +DD+ +++ Sbjct: 4 LSVRVED---HVAVITLNHPPANALSSQVLH---ELSELLDQVEKDDNVRVVVIHGEGRF 57 Query: 73 ----------LSSPGGSAYA-----GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCA 117 S G+ F ++K KPVI +H A G ++ + Sbjct: 58 FSAGADIKEFTSVTEAEQATELAQLGQVTFERVEKFS--KPVIAAIHGAALGGGLELAMS 115 Query: 118 SNIIVAAETSLVG 130 +I A E++ +G Sbjct: 116 CHIRFATESAKLG 128 >gnl|CDD|181325 PRK08252, PRK08252, enoyl-CoA hydratase; Provisional. Length = 254 Score = 28.0 bits (63), Expect = 3.2 Identities = 13/35 (37%), Positives = 21/35 (60%) Query: 96 RKPVITEVHEMAASAGYLISCASNIIVAAETSLVG 130 RKP+I V A + G+ ++ A ++IVAA + G Sbjct: 91 RKPLIAAVEGYALAGGFELALACDLIVAARDAKFG 125 >gnl|CDD|135772 PRK06127, PRK06127, enoyl-CoA hydratase; Provisional. Length = 269 Score = 27.7 bits (62), Expect = 3.2 Identities = 8/28 (28%), Positives = 16/28 (57%) Query: 210 GRIWTGAEAKKVGLIDVVGGQEEVWQSL 237 R + AEA ++GL+ V +++ +L Sbjct: 174 ARRFDAAEALRIGLVHRVTAADDLETAL 201 >gnl|CDD|178509 PLN02921, PLN02921, naphthoate synthase. Length = 327 Score = 27.4 bits (61), Expect = 4.1 Identities = 38/154 (24%), Positives = 61/154 (39%), Gaps = 35/154 (22%) Query: 37 HVARIAI-RGQIEDS------QELIERIERISRDDSATALIVSLSSPGGSA--------- 80 +A+I I R + ++ +EL +RDDS+ +I+ L+ G A Sbjct: 76 GIAKITINRPERRNAFRPRTVKELQRAFND-ARDDSSVGVII-LTGKGTKAFCSGGDQAV 133 Query: 81 -----YAG-EAIFR------AIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSL 128 Y G + R IQ + KPVI V A G+++ ++ +AA+ ++ Sbjct: 134 RGKDGYVGPDDAGRLNVLDLQIQIRRLPKPVIAMVAGYAVGGGHILHMVCDLTIAADNAV 193 Query: 129 VGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKA 162 G G P V F G SI + KA Sbjct: 194 FGQTG-----PKVGSFDAGYGSSIMARLVGQKKA 222 >gnl|CDD|180238 PRK05756, PRK05756, pyridoxamine kinase; Validated. Length = 286 Score = 27.5 bits (62), Expect = 4.2 Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 3/51 (5%) Query: 48 EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKP 98 E+++ I I A+ LS GSA GEAI A+++VK P Sbjct: 57 SHLTEIVQGIADIGWLGECDAV---LSGYLGSAEQGEAILDAVRRVKAANP 104 >gnl|CDD|185312 PRK15414, PRK15414, phosphomannomutase CpsG; Provisional. Length = 456 Score = 27.2 bits (60), Expect = 4.5 Identities = 20/65 (30%), Positives = 29/65 (44%), Gaps = 10/65 (15%) Query: 190 VRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKI 249 VRL SE+ L L+ G G + +G+ G EE++ + + LGVD I Sbjct: 47 VRLTSETLK------LALAKGLQDAGVDVLDIGM----SGTEEIYFATFHLGVDGGIEVT 96 Query: 250 KDWNP 254 NP Sbjct: 97 ASHNP 101 >gnl|CDD|181223 PRK08074, PRK08074, bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated. Length = 928 Score = 27.2 bits (61), Expect = 5.6 Identities = 16/65 (24%), Positives = 31/65 (47%), Gaps = 18/65 (27%) Query: 143 PFLDKL-GVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPY 201 PF+ +L G+S + VK +P F +V P+ V++++ FV + N+ + Sbjct: 52 PFITELTGISEEMVKQAP------LFEDVAPEIVELLEGAY------FV-----AHNVHF 94 Query: 202 DKTLV 206 D + Sbjct: 95 DLNFL 99 >gnl|CDD|183548 PRK12478, PRK12478, enoyl-CoA hydratase; Provisional. Length = 298 Score = 26.8 bits (59), Expect = 6.0 Identities = 12/54 (22%), Positives = 25/54 (46%), Gaps = 2/54 (3%) Query: 78 GSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGS 131 F AI + KPVI +VH + ++I++A++ +++G+ Sbjct: 96 ARETGPTQKFMAIWRAS--KPVIAQVHGWCVGGASDYALCADIVIASDDAVIGT 147 >gnl|CDD|180869 PRK07189, PRK07189, malonate decarboxylase subunit beta; Reviewed. Length = 301 Score = 26.8 bits (60), Expect = 6.2 Identities = 24/96 (25%), Positives = 39/96 (40%), Gaps = 22/96 (22%) Query: 53 LIERIERISRDDSATALIVSLSSPGG----SAYAGEA----IFRAIQKVKNRKPVITEVH 104 +E +R+ TA+++ + GG A AG A I RAI ++ PVI + Sbjct: 95 ALELAAEDNRNGIPTAVLLLFET-GGVRLQEANAGLAAIAEIMRAIVDLRAAVPVIGLI- 152 Query: 105 EMAASAG------YLISCASNIIVAAETSLVGSIGV 134 G + S +IV+ E G +G+ Sbjct: 153 --GGRVGCFGGMGIAAALCSYLIVSEE----GRLGL 182 >gnl|CDD|178210 PLN02600, PLN02600, enoyl-CoA hydratase. Length = 251 Score = 26.3 bits (58), Expect = 8.6 Identities = 15/54 (27%), Positives = 25/54 (46%), Gaps = 9/54 (16%) Query: 57 IERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPV-ITEVHEMAAS 109 E+I D SA +++ S PG +F A +K R+ + +EV + S Sbjct: 31 FEKIQADASARVVMLRSSVPG--------VFCAGADLKERRKMSPSEVQKFVNS 76 >gnl|CDD|130811 TIGR01750, fabZ, beta-hydroxyacyl-[acyl carrier protein] dehydratase FabZ. This enzyme, FabZ, shows overlapping substrate specificity with FabA with regard to chain length in fatty acid biosynthesis. FabZ works preferentially on shorter chains and is often designated (3R)-hydroxymyristoyl-[acyl carrier protein] dehydratase, although its actual specificity is broader. Unlike FabA, FabZ does not function as an isomerase and cannot initiate unsaturated fatty acid biosynthesis. However, only FabZ can act during the elongation of unsaturated fatty acid chains. Length = 140 Score = 26.5 bits (59), Expect = 9.1 Identities = 11/35 (31%), Positives = 18/35 (51%), Gaps = 1/35 (2%) Query: 67 TALIVSLSSPGGSAYAGE-AIFRAIQKVKNRKPVI 100 ++++ S GG G+ F I K K R+PV+ Sbjct: 65 AGGVLAILSLGGEIGKGKLVYFAGIDKAKFRRPVV 99 >gnl|CDD|180625 PRK06563, PRK06563, enoyl-CoA hydratase; Provisional. Length = 255 Score = 26.5 bits (59), Expect = 9.7 Identities = 9/31 (29%), Positives = 17/31 (54%) Query: 96 RKPVITEVHEMAASAGYLISCASNIIVAAET 126 KP++ V + G + A++I+VAA+ Sbjct: 92 SKPLVVAVQGYCLTLGIELMLAADIVVAADN 122 Database: CddB Posted date: Feb 4, 2011 9:54 PM Number of letters in database: 5,994,473 Number of sequences in database: 21,608 Lambda K H 0.317 0.132 0.389 Gapped Lambda K H 0.267 0.0703 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21608 Number of Hits to DB: 4,674,202 Number of extensions: 289384 Number of successful extensions: 777 Number of sequences better than 10.0: 1 Number of HSP's gapped: 767 Number of HSP's successfully gapped: 54 Length of query: 293 Length of database: 5,994,473 Length adjustment: 93 Effective length of query: 200 Effective length of database: 3,984,929 Effective search space: 796985800 Effective search space used: 796985800 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 57 (25.8 bits)