RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddB
21,608 sequences; 5,994,473 total letters
Searching..................................................done
Query= gi|254780747|ref|YP_003065160.1| putative protease IV
transmembrane protein [Candidatus Liberibacter asiaticus str. psy62]
(293 letters)
>gnl|CDD|129789 TIGR00706, SppA_dom, signal peptide peptidase SppA, 36K type. The
member of this family from Bacillus subtilis was shown
to have properties consistent with a role in degrading
signal peptides after cleavage from precursor proteins,
although it was not demonstrated conclusively.
Length = 207
Score = 167 bits (424), Expect = 4e-42
Identities = 71/195 (36%), Positives = 123/195 (63%), Gaps = 1/195 (0%)
Query: 38 VARIAIRGQIEDSQE-LIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNR 96
+A + + G I S E ++I+RI D S AL++ ++SPGG+ A E I+ ++K+K +
Sbjct: 2 IAILPVSGAIAVSPEDFDKKIKRIKDDKSIKALLLRINSPGGTVVASEEIYEKLKKLKAK 61
Query: 97 KPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVK 156
KPV+ + +AAS GY I+ A++ IVA ++ GSIGV+ Q V+ +KLG+ + +K
Sbjct: 62 KPVVASMGGVAASGGYYIAMAADEIVANPGTITGSIGVILQGANVEKLYEKLGIEFEVIK 121
Query: 157 SSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRIWTGA 216
S K SP E+ P+ ++Q++V+ SY FV++V++ RN+P + +DGR++TG
Sbjct: 122 SGEYKDIGSPTRELTPEERDILQNLVNESYEQFVQVVAKGRNLPVEDVKKFADGRVFTGR 181
Query: 217 EAKKVGLIDVVGGQE 231
+A K+ L+D +G ++
Sbjct: 182 QALKLRLVDKLGTED 196
>gnl|CDD|162004 TIGR00705, SppA_67K, signal peptide peptidase SppA, 67K type. E.
coli SohB, which is most closely homologous to the
C-terminal duplication of SppA, is predicted to perform
a similar function of small peptide degradation, but in
the periplasm. Many prokaryotes have a single SppA/SohB
homolog that may perform the function of either or both.
Length = 584
Score = 138 bits (348), Expect = 2e-33
Identities = 66/210 (31%), Positives = 112/210 (53%), Gaps = 11/210 (5%)
Query: 33 DNSPHVARIAIRGQI---EDSQELI--ERIERISR----DDSATALIVSLSSPGGSAYAG 83
D + + + G I D++ + + + R D A+++ ++SPGGS +A
Sbjct: 305 DVQDKIGIVHLEGPIADGRDTEGNTGGDTVAALLRVARSDPDIKAVVLRINSPGGSVFAS 364
Query: 84 EAIFRAIQKVKNR-KPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142
E I R + + + R KPVI + MAAS GY I+ A++ IVA+ ++ GSIGV P +
Sbjct: 365 EIIRRELARAQARGKPVIVSMGAMAASGGYWIASAADYIVASPNTITGSIGVFSVLPTFE 424
Query: 143 PFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPYD 202
LD++GV + V + + A S + + +MQ V++ Y F+ +VS RN+
Sbjct: 425 NSLDRIGVHVDGVSTHEL-ANVSLLRPLTAEDQAIMQLSVEAGYRRFLSVVSAGRNLTPT 483
Query: 203 KTLVLSDGRIWTGAEAKKVGLIDVVGGQEE 232
+ ++ GR+WTG +A GL+D +GG +E
Sbjct: 484 QVDKVAQGRVWTGEDAVSNGLVDALGGLDE 513
Score = 51.4 bits (123), Expect = 3e-07
Identities = 42/207 (20%), Positives = 78/207 (37%), Gaps = 14/207 (6%)
Query: 57 IERISRDDSATALIVSLSSPGGSAYAG-EAIFRAIQKVKNRKPVITEVHEMAASAGYLIS 115
I + + D L+ LS+ G I A+ + K+ + + Y ++
Sbjct: 85 IRQAADDRRIEGLVFDLSNFSGWDSPHLVEIGSALSEFKDSGKPVYAYGTNYSQGQYYLA 144
Query: 116 CASNIIVAAETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFS--EVNPK 173
++ I+ V G + + K LDKLGV + K PFS +++P+
Sbjct: 145 SFADEIILNPMGSVDLHGFYTETLFYKGMLDKLGVRWHXFRVGTYKGAVEPFSRKDMSPE 204
Query: 174 AVQMMQDVVDSSYHWFVRLVSESRNIPYDKTLVLSDGRI-----WTGAEAKKV---GLID 225
A + Q + + ++ VS +R IP + + G + G A+ L+
Sbjct: 205 ARRNYQRWLGELWQNYLSSVSRNRAIPVQQLAPYAQGLLELLQKLNGDGARYALAEKLVT 264
Query: 226 VVGGQEEVWQSLYAL---GVDQSIRKI 249
V E ++L L D++ I
Sbjct: 265 AVCSYAEAGKALKFLFEDDYDKAKNFI 291
>gnl|CDD|182860 PRK10949, PRK10949, protease 4; Provisional.
Length = 618
Score = 109 bits (274), Expect = 1e-24
Identities = 70/212 (33%), Positives = 106/212 (50%), Gaps = 23/212 (10%)
Query: 33 DNSPHVARIAIRGQIEDSQE---------LIERIERISRDDSATALIVSLSSPGGSAYAG 83
D +A I G I D +E +I D A+++ ++SPGGS A
Sbjct: 323 DTGGSIAVIFANGAIMDGEETPGNVGGDTTAAQIRDARLDPKVKAIVLRVNSPGGSVTAS 382
Query: 84 EAIFRAIQKVKNR-KPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142
E I + + KPV+ + MAAS GY IS +N IVA+ ++L GSIG+ V+
Sbjct: 383 EVIRAELAAARAAGKPVVVSMGGMAASGGYWISTPANYIVASPSTLTGSIGIFGVINTVE 442
Query: 143 PFLDKLGVSIKSVKSSPM------KAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSES 196
LD +GV V +SP+ KA P F QMMQ +++ Y F+ LV++S
Sbjct: 443 NSLDSIGVHTDGVSTSPLADVSITKALPPEFQ-------QMMQLSIENGYKRFITLVADS 495
Query: 197 RNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVG 228
R+ ++ ++ G +WTG +AK GL+D +G
Sbjct: 496 RHKTPEQIDKIAQGHVWTGQDAKANGLVDSLG 527
>gnl|CDD|183309 PRK11778, PRK11778, putative inner membrane peptidase; Provisional.
Length = 330
Score = 59.8 bits (146), Expect = 7e-10
Identities = 47/165 (28%), Positives = 82/165 (49%), Gaps = 13/165 (7%)
Query: 70 IVSLSSPGG--SAYAGEAIFRAIQKVKNRK---PVITEVHEMAASAGYLISCASNIIVAA 124
++ L SPGG Y G A A Q + R P+ V ++AAS GY+++C ++ I+AA
Sbjct: 127 LLRLESPGGVVHGY-GLA---ASQLQRLRDAGIPLTVAVDKVAASGGYMMACVADKIIAA 182
Query: 125 ETSLVGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDS 184
++VGSIGV+ Q P L K + ++ + K + F E + + ++ ++
Sbjct: 183 PFAIVGSIGVVAQIPNFHRLLKKHDIDVELHTAGEYKRTLTLFGENTEEGREKFREELEE 242
Query: 185 SYHWFVRLVSESR-NIPYDKTLVLSDGRIWTGAEAKKVGLIDVVG 228
++ F V R + DK + G W G +A ++GL+D +
Sbjct: 243 THQLFKDFVQRYRPQLDIDKV---ATGEHWYGQQALELGLVDEIQ 284
>gnl|CDD|183589 PRK12553, PRK12553, ATP-dependent Clp protease proteolytic subunit;
Reviewed.
Length = 207
Score = 43.0 bits (102), Expect = 9e-05
Identities = 30/85 (35%), Positives = 43/85 (50%), Gaps = 14/85 (16%)
Query: 40 RIAIRGQIED-------SQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQK 92
I + GQ++D +Q L+ +E I D T I +SPGGS AG+AI+ IQ
Sbjct: 37 IIFLGGQVDDASANDVMAQLLV--LESIDPDRDITLYI---NSPGGSVTAGDAIYDTIQF 91
Query: 93 VKNRKPVITEVHEMAASAGYLISCA 117
++ V T AASAG ++ A
Sbjct: 92 IRP--DVQTVCTGQAASAGAVLLAA 114
>gnl|CDD|184720 PRK14512, PRK14512, ATP-dependent Clp protease proteolytic subunit;
Provisional.
Length = 197
Score = 38.6 bits (90), Expect = 0.002
Identities = 28/82 (34%), Positives = 39/82 (47%), Gaps = 8/82 (9%)
Query: 41 IAIRGQIEDSQELIERIER----ISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNR 96
I I G+I +++L E + + DS + V + S GG AG AIF I+ VK
Sbjct: 26 IVIAGEI--NKDLSELFQEKILLLEALDSKKPIFVYIDSEGGDIDAGFAIFNMIRFVK-- 81
Query: 97 KPVITEVHEMAASAGYLISCAS 118
V T + ASA LI A+
Sbjct: 82 PKVFTIGVGLVASAAALIFLAA 103
>gnl|CDD|184722 PRK14514, PRK14514, ATP-dependent Clp protease proteolytic subunit;
Provisional.
Length = 221
Score = 37.2 bits (86), Expect = 0.006
Identities = 42/158 (26%), Positives = 69/158 (43%), Gaps = 31/158 (19%)
Query: 71 VSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVG 130
+ ++SPGGS YAG I+ +Q + + V T MAAS AS ++VA G
Sbjct: 89 IYINSPGGSVYAGLGIYDTMQFISS--DVATICTGMAASM------ASVLLVA------G 134
Query: 131 SIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFV 190
+ G P+ + + + P+ S++ A + +Q + Y
Sbjct: 135 TKGKRSALPHSRVMIHQ-----------PLGGAQGQASDIEITARE-IQKLKKELY---- 178
Query: 191 RLVSESRNIPYDKTLVLSDGRIW-TGAEAKKVGLIDVV 227
++++ P+DK SD W T EAK+ G+ID V
Sbjct: 179 TIIADHSGTPFDKVWADSDRDYWMTAQEAKEYGMIDEV 216
>gnl|CDD|181249 PRK08139, PRK08139, enoyl-CoA hydratase; Validated.
Length = 266
Score = 36.8 bits (86), Expect = 0.007
Identities = 29/110 (26%), Positives = 46/110 (41%), Gaps = 29/110 (26%)
Query: 52 ELIERIERISRDDSATALIVSLSSPGGSAYAG---------------EAIFR-------A 89
L ++ I+ D S V L++ G + AG A+F A
Sbjct: 42 ALQAALDAIAADPSVRV--VVLAAAGKAFCAGHDLKEMRAARGLAYFRALFARCSRVMQA 99
Query: 90 IQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSIGV---LF 136
I + +PVI VH +A +AG + + ++ VAA+T+ GV LF
Sbjct: 100 IVAL--PQPVIARVHGIATAAGCQLVASCDLAVAADTARFAVPGVNIGLF 147
>gnl|CDD|162806 TIGR02322, phosphon_PhnN, phosphonate metabolism
protein/1,5-bisphosphokinase (PRPP-forming) PhnN.
Members of this family resemble PhnN of phosphonate
utilization operons, where different such operons confer
the ability to use somewhat different profiles of C-P
bond-containing compounds (see PubMed:15231805),
including phosphites as well as phosphonates. PhnN in E.
coli shows considerable homology to guanylate kinases
(EC 2.7.4.8), and has actually been shown to act as a
ribose 1,5-bisphosphokinase (PRPP forming). This
suggests an analogous kinase reaction for phosphonate
metabolism, converting
5-phosphoalpha-1-(methylphosphono)ribose to
methylphosphono-PRPP.
Length = 179
Score = 36.2 bits (84), Expect = 0.009
Identities = 28/91 (30%), Positives = 46/91 (50%), Gaps = 15/91 (16%)
Query: 4 VLKKIKTRYVMLSLVTLTVVYFSWSSHVEDNSPHV--ARIAIRGQIEDSQELIERIERIS 61
VL + + RY L +V +T SP V R+A RG+ E +E+ ER+ R +
Sbjct: 101 VLPEARQRYPNLLVVNITA------------SPDVLAQRLAARGR-ESREEIEERLARSA 147
Query: 62 RDDSATALIVSLSSPGGSAYAGEAIFRAIQK 92
R +A A + ++ + G AGE + R ++K
Sbjct: 148 RFAAAPADVTTIDNSGSLEVAGETLLRLLRK 178
>gnl|CDD|178955 PRK00277, clpP, ATP-dependent Clp protease proteolytic subunit;
Reviewed.
Length = 200
Score = 35.5 bits (83), Expect = 0.015
Identities = 18/43 (41%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Query: 75 SPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCA 117
SPGGS AG AI+ +Q +K V T AAS G + A
Sbjct: 70 SPGGSVTAGLAIYDTMQFIKP--DVSTICIGQAASMGAFLLAA 110
>gnl|CDD|139060 PRK12551, PRK12551, ATP-dependent Clp protease proteolytic subunit;
Reviewed.
Length = 196
Score = 34.8 bits (80), Expect = 0.029
Identities = 21/55 (38%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Query: 63 DDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCA 117
+D + + ++SPGGS Y G IF +Q VK V T +AAS G + CA
Sbjct: 52 EDPEKDIYLYINSPGGSVYDGLGIFDTMQHVK--PDVHTVCVGLAASMGAFLLCA 104
>gnl|CDD|129584 TIGR00493, clpP, ATP-dependent Clp protease, proteolytic subunit
ClpP. This model for the proteolytic subunit ClpP has
been rebuilt to a higher stringency. In every bacterial
genome with the ClpXP machine, a ClpP protein will be
found that scores with this model. In general, this ClpP
member will be encoded adjacent to the clpX gene, as
were all examples used in the seed alignment. A large
fraction of genomes have one or more additional ClpP
paralogs, sometimes encoded nearby and sometimes
elsewhere. The stringency of the trusted cutoff used
here excludes the more divergent ClpP paralogs from
being called authentic ClpP by this model.
Length = 191
Score = 34.4 bits (79), Expect = 0.035
Identities = 24/79 (30%), Positives = 42/79 (53%), Gaps = 5/79 (6%)
Query: 41 IAIRGQIEDS--QELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKP 98
I + G++ DS ++ ++ + +D + + ++SPGGS AG AI+ +Q +K
Sbjct: 29 IFLSGEVNDSVANLIVAQLLFLEAEDPEKDIYLYINSPGGSITAGLAIYDTMQFIK--PD 86
Query: 99 VITEVHEMAASAG-YLISC 116
V T AAS G +L+S
Sbjct: 87 VSTICIGQAASMGAFLLSA 105
>gnl|CDD|131333 TIGR02280, PaaB1, phenylacetate degradation probable enoyl-CoA
hydratase paaB. This family of proteins are found
within apparent operons for the degradation of
phenylacetic acid. These proteins contain the enoyl-CoA
hydratase domain as detected by pfam00378. This activity
is consistent with current hypotheses for the
degradation pathway which involve the ligation of
phenylacetate with coenzyme A (paaF), hydroxylation
(paaGHIJK), ring-opening (paaN) and degradation of the
resulting fatty acid-like compound to a Krebs cycle
intermediate (paaABCDE).
Length = 256
Score = 34.1 bits (78), Expect = 0.047
Identities = 31/96 (32%), Positives = 49/96 (51%), Gaps = 21/96 (21%)
Query: 52 ELIERIERISRDDSATALIVS-----------LS----SPGGSAYAGEAIFRAIQKVKNR 96
EL E +ER+ RDD A AL+++ LS +PGG+ G I + R
Sbjct: 30 ELREALERVERDD-ARALMLTGAGRGFCAGQDLSERNPTPGGAPDLGRTIETFYNPLVRR 88
Query: 97 -----KPVITEVHEMAASAGYLISCASNIIVAAETS 127
PV+ V+ +AA AG ++ A +I++AAE++
Sbjct: 89 LRALPLPVVCAVNGVAAGAGANLALACDIVLAAESA 124
>gnl|CDD|181122 PRK07799, PRK07799, enoyl-CoA hydratase; Provisional.
Length = 263
Score = 32.4 bits (74), Expect = 0.14
Identities = 19/36 (52%), Positives = 22/36 (61%), Gaps = 4/36 (11%)
Query: 190 VRLVSESRNIPYDKTL-VLSDGRIWTGAEAKKVGLI 224
VRLV R IPY +L GR T AEAK++GLI
Sbjct: 150 VRLV---RQIPYTVACDLLLTGRHITAAEAKEIGLI 182
>gnl|CDD|181174 PRK07938, PRK07938, enoyl-CoA hydratase; Provisional.
Length = 249
Score = 31.9 bits (73), Expect = 0.19
Identities = 20/70 (28%), Positives = 30/70 (42%), Gaps = 11/70 (15%)
Query: 57 IERISRDDSATALIVSLSSPGGSAYAGE-AIFRAIQKVKNRKPVITEVHEMAASAGYLIS 115
I+ + TALI A G A FRA+ + PVI VH G +
Sbjct: 64 IKELQATPGFTALI--------DANRGCFAAFRAVYE--CAVPVIAAVHGFCLGGGIGLV 113
Query: 116 CASNIIVAAE 125
+++IVA++
Sbjct: 114 GNADVIVASD 123
>gnl|CDD|168580 PRK06495, PRK06495, enoyl-CoA hydratase; Provisional.
Length = 257
Score = 31.6 bits (72), Expect = 0.23
Identities = 14/34 (41%), Positives = 21/34 (61%)
Query: 97 KPVITEVHEMAASAGYLISCASNIIVAAETSLVG 130
KPVI V+ A AG + + +IIVA+E ++ G
Sbjct: 98 KPVIAAVNGPALGAGLGLVASCDIIVASENAVFG 131
>gnl|CDD|181356 PRK08290, PRK08290, enoyl-CoA hydratase; Provisional.
Length = 288
Score = 31.5 bits (72), Expect = 0.24
Identities = 8/30 (26%), Positives = 17/30 (56%)
Query: 96 RKPVITEVHEMAASAGYLISCASNIIVAAE 125
KP I +V + G +++ ++IVA++
Sbjct: 118 PKPTIAQVQGACIAGGLMLAWVCDLIVASD 147
>gnl|CDD|184721 PRK14513, PRK14513, ATP-dependent Clp protease proteolytic subunit;
Provisional.
Length = 201
Score = 31.1 bits (70), Expect = 0.35
Identities = 38/156 (24%), Positives = 61/156 (39%), Gaps = 31/156 (19%)
Query: 73 LSSPGGSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGSI 132
++ PGG YAG AI+ ++ +K PV T +A S G ++ A G
Sbjct: 64 INCPGGEVYAGLAIYDTMRYIK--APVSTICVGIAMSMGSVLLMA------------GDK 109
Query: 133 GVLFQYPYVKPFLDKLGVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRL 192
G P + + + + +P EV K V ++D + YH
Sbjct: 110 GKRMALPNSRIMIHQGSAGFRG---------NTPDLEVQAKEVLFLRDTLVDIYH----- 155
Query: 193 VSESRNIPYDKTLV-LSDGRIWTGAEAKKVGLIDVV 227
++P++K L + + EAK GLID V
Sbjct: 156 --RHTDLPHEKLLRDMERDYFMSPEEAKAYGLIDSV 189
>gnl|CDD|181723 PRK09245, PRK09245, enoyl-CoA hydratase; Provisional.
Length = 266
Score = 31.1 bits (71), Expect = 0.35
Identities = 27/117 (23%), Positives = 44/117 (37%), Gaps = 26/117 (22%)
Query: 34 NSPHVARIAIRGQIEDSQELIERIERISRDDSATALIVSLSSPGGSA-------YAGEAI 86
N P R A+ + L+ I+ D S A+I++ + S+ A
Sbjct: 19 NRPE-TRNALSDN-DAVDALVAACAAINADRSVRAVILTGAGTAFSSGGNVKDMRARVGA 76
Query: 87 F------------RAIQKVKN-----RKPVITEVHEMAASAGYLISCASNIIVAAET 126
F IQ++ PVI V+ A AG ++C +I +A+ET
Sbjct: 77 FGGSPADIRQGYRHGIQRIPLALYNLEVPVIAAVNGPAIGAGCDLACMCDIRIASET 133
>gnl|CDD|165533 PHA03276, PHA03276, envelope glycoprotein K; Provisional.
Length = 337
Score = 30.6 bits (69), Expect = 0.42
Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 10/44 (22%)
Query: 99 VITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVK 142
V++ H+M A A YL++ A ++ + VL +YPY K
Sbjct: 147 VVSPAHKMVAPATYLLNYAGRVVSS----------VLLRYPYTK 180
>gnl|CDD|181250 PRK08140, PRK08140, enoyl-CoA hydratase; Provisional.
Length = 262
Score = 30.7 bits (70), Expect = 0.43
Identities = 28/100 (28%), Positives = 52/100 (52%), Gaps = 26/100 (26%)
Query: 51 QELIERIERISRDDSATALIVS-----------LS----SPGGSAY-AGEAI-------F 87
+EL E ++++ DD A AL+++ L+ +PGG+ GE+I
Sbjct: 34 RELREALDQV-EDDGARALLLTGAGRGFCAGQDLADRDVTPGGAMPDLGESIETFYNPLV 92
Query: 88 RAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETS 127
R ++ + PVI V+ +AA AG ++ A +I++AA ++
Sbjct: 93 RRLRAL--PLPVIAAVNGVAAGAGANLALACDIVLAARSA 130
>gnl|CDD|180591 PRK06494, PRK06494, enoyl-CoA hydratase; Provisional.
Length = 259
Score = 30.8 bits (70), Expect = 0.44
Identities = 12/31 (38%), Positives = 21/31 (67%)
Query: 97 KPVITEVHEMAASAGYLISCASNIIVAAETS 127
KP+I V+ +A G+ ++ A ++IVAAE +
Sbjct: 95 KPIIAAVNGVAMGGGFELALACDLIVAAENA 125
>gnl|CDD|178476 PLN02888, PLN02888, enoyl-CoA hydratase.
Length = 265
Score = 30.1 bits (68), Expect = 0.63
Identities = 30/116 (25%), Positives = 52/116 (44%), Gaps = 21/116 (18%)
Query: 31 VEDNSPHVARIAI-RGQIEDS------QELIERIERISRDDSATALIVSLSSP----GGS 79
V + +A I I R + ++ EL +R+ DDS +I++ S G
Sbjct: 13 VPKSRNGIATITINRPKALNALTRPMMVELAAAFKRLDEDDSVKVIILTGSGRAFCSGVD 72
Query: 80 AYAGEAIFRA----------IQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAE 125
A E +F+ Q + RKP+I ++ A +AG+ I+ A +I+VA+
Sbjct: 73 LTAAEEVFKGDVKDVETDPVAQMERCRKPIIGAINGFAITAGFEIALACDILVASR 128
>gnl|CDD|181009 PRK07511, PRK07511, enoyl-CoA hydratase; Provisional.
Length = 260
Score = 30.0 bits (68), Expect = 0.69
Identities = 13/29 (44%), Positives = 19/29 (65%)
Query: 97 KPVITEVHEMAASAGYLISCASNIIVAAE 125
KPVI V AA AG+ ++ A +++VAA
Sbjct: 99 KPVIAAVEGAAAGAGFSLALACDLLVAAR 127
>gnl|CDD|180658 PRK06688, PRK06688, enoyl-CoA hydratase; Provisional.
Length = 259
Score = 30.2 bits (69), Expect = 0.72
Identities = 15/96 (15%), Positives = 38/96 (39%), Gaps = 16/96 (16%)
Query: 51 QELIERIERISRDDSATALIVS---------------LSSPGGSAYAGEAIFRAIQKVKN 95
Q L + +E + D + ++++ +P + R ++ +
Sbjct: 35 QALADALEAAATDPAVRVVVLTGAGRAFSAGGDIKDFPKAPPKPPDELAPVNRFLRAIAA 94
Query: 96 -RKPVITEVHEMAASAGYLISCASNIIVAAETSLVG 130
KPV+ V+ A G ++ A +++ A+E++
Sbjct: 95 LPKPVVAAVNGPAVGVGVSLALACDLVYASESAKFS 130
>gnl|CDD|181329 PRK08258, PRK08258, enoyl-CoA hydratase; Provisional.
Length = 277
Score = 29.9 bits (68), Expect = 0.81
Identities = 8/31 (25%), Positives = 19/31 (61%)
Query: 97 KPVITEVHEMAASAGYLISCASNIIVAAETS 127
+P+I V + A AG +++ AS++ + ++
Sbjct: 114 QPIIAAVDGVCAGAGAILAMASDLRLGTPSA 144
>gnl|CDD|178753 PLN03214, PLN03214, probable enoyl-CoA hydratase/isomerase;
Provisional.
Length = 278
Score = 29.5 bits (66), Expect = 1.2
Identities = 14/37 (37%), Positives = 18/37 (48%)
Query: 191 RLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVV 227
RL +L GR+ AEAK++GLID V
Sbjct: 157 RLFMGRVIDRKVAESLLLRGRLVRPAEAKQLGLIDEV 193
>gnl|CDD|180336 PRK05981, PRK05981, enoyl-CoA hydratase; Provisional.
Length = 266
Score = 29.3 bits (66), Expect = 1.2
Identities = 13/58 (22%), Positives = 27/58 (46%), Gaps = 6/58 (10%)
Query: 74 SSPGGSAYAGEAIF----RAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETS 127
S G + A E + R ++ + P++T V+ AA G + ++I+ A ++
Sbjct: 79 DSGGDAGAALETAYHPFLRRLRNLP--CPIVTAVNGPAAGVGMSFALMGDLILCARSA 134
>gnl|CDD|180270 PRK05809, PRK05809, 3-hydroxybutyryl-CoA dehydratase; Validated.
Length = 260
Score = 29.3 bits (66), Expect = 1.2
Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
Query: 83 GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVG 130
G +FR ++ + KPVI ++ A G +S A +I +A+E + G
Sbjct: 86 GNKVFRKLENLD--KPVIAAINGFALGGGCELSMACDIRIASEKAKFG 131
>gnl|CDD|180010 PRK05318, PRK05318, deoxyguanosinetriphosphate
triphosphohydrolase-like protein; Provisional.
Length = 432
Score = 29.1 bits (66), Expect = 1.3
Identities = 7/19 (36%), Positives = 8/19 (42%)
Query: 248 KIKDWNPPKNYWFCDLKNL 266
K DW PPK + D
Sbjct: 185 KASDWKPPKGIFDDDQDIF 203
>gnl|CDD|179599 PRK03580, PRK03580, carnitinyl-CoA dehydratase; Provisional.
Length = 261
Score = 28.9 bits (65), Expect = 1.8
Identities = 16/56 (28%), Positives = 28/56 (50%), Gaps = 9/56 (16%)
Query: 79 SAYAGEAI--------FRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIVAAE 125
+A GEA F + ++ + KPVI V+ A G+ ++ A++ IV A+
Sbjct: 68 AAAEGEAPDADFGPGGFAGLTEIFDLDKPVIAAVNGYAFGGGFELALAADFIVCAD 123
>gnl|CDD|162130 TIGR00955, 3a01204, The Eye Pigment Precursor Transporter (EPP)
Family protein.
Length = 617
Score = 28.9 bits (65), Expect = 1.8
Identities = 19/47 (40%), Positives = 27/47 (57%), Gaps = 9/47 (19%)
Query: 99 VITEVHEMAASAGYLISCASNIIVAAETSLVGSIGVLFQYPYVKPFL 145
++T V +A S GYLISCA + TS+ ++G P+V PFL
Sbjct: 478 LVTLVANVATSFGYLISCAFS-----STSMALTVGP----PFVIPFL 515
>gnl|CDD|180298 PRK05870, PRK05870, enoyl-CoA hydratase; Provisional.
Length = 249
Score = 28.5 bits (64), Expect = 2.0
Identities = 29/129 (22%), Positives = 45/129 (34%), Gaps = 30/129 (23%)
Query: 27 WSSHVEDNSPHVARIAI-----RGQI--EDSQELIERIERISRDDSATALIVS------- 72
+ D VA I + R + E S +L + D AL+V+
Sbjct: 2 MDPVLLDVDDGVALITVNDPDRRNAVTAEMSAQLRAAVAAAEADPDVHALVVTGAGKAFC 61
Query: 73 ----LSS----PGGSAYAG-EAIFRAIQKVKN-RKPVITEVHEMAASAGYLISCASNIIV 122
L++ PG A G I+ V + P I V+ A AG N+ +
Sbjct: 62 AGADLTALGAAPGRPAEDGLRRIYDGFLAVASCPLPTIAAVNGAAVGAGL------NLAL 115
Query: 123 AAETSLVGS 131
AA+ + G
Sbjct: 116 AADVRIAGP 124
>gnl|CDD|181070 PRK07658, PRK07658, enoyl-CoA hydratase; Provisional.
Length = 257
Score = 28.4 bits (64), Expect = 2.1
Identities = 28/133 (21%), Positives = 50/133 (37%), Gaps = 37/133 (27%)
Query: 27 WSSHVEDNSPHVARIAI---------RGQIEDSQELIERIERISRDDSATALIVS----- 72
S VED HVA I + + EL E ++++ +DD+ +++
Sbjct: 4 LSVRVED---HVAVITLNHPPANALSSQVLH---ELSELLDQVEKDDNVRVVVIHGEGRF 57
Query: 73 ----------LSSPGGSAYA-----GEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCA 117
S G+ F ++K KPVI +H A G ++ +
Sbjct: 58 FSAGADIKEFTSVTEAEQATELAQLGQVTFERVEKFS--KPVIAAIHGAALGGGLELAMS 115
Query: 118 SNIIVAAETSLVG 130
+I A E++ +G
Sbjct: 116 CHIRFATESAKLG 128
>gnl|CDD|181325 PRK08252, PRK08252, enoyl-CoA hydratase; Provisional.
Length = 254
Score = 28.0 bits (63), Expect = 3.2
Identities = 13/35 (37%), Positives = 21/35 (60%)
Query: 96 RKPVITEVHEMAASAGYLISCASNIIVAAETSLVG 130
RKP+I V A + G+ ++ A ++IVAA + G
Sbjct: 91 RKPLIAAVEGYALAGGFELALACDLIVAARDAKFG 125
>gnl|CDD|135772 PRK06127, PRK06127, enoyl-CoA hydratase; Provisional.
Length = 269
Score = 27.7 bits (62), Expect = 3.2
Identities = 8/28 (28%), Positives = 16/28 (57%)
Query: 210 GRIWTGAEAKKVGLIDVVGGQEEVWQSL 237
R + AEA ++GL+ V +++ +L
Sbjct: 174 ARRFDAAEALRIGLVHRVTAADDLETAL 201
>gnl|CDD|178509 PLN02921, PLN02921, naphthoate synthase.
Length = 327
Score = 27.4 bits (61), Expect = 4.1
Identities = 38/154 (24%), Positives = 61/154 (39%), Gaps = 35/154 (22%)
Query: 37 HVARIAI-RGQIEDS------QELIERIERISRDDSATALIVSLSSPGGSA--------- 80
+A+I I R + ++ +EL +RDDS+ +I+ L+ G A
Sbjct: 76 GIAKITINRPERRNAFRPRTVKELQRAFND-ARDDSSVGVII-LTGKGTKAFCSGGDQAV 133
Query: 81 -----YAG-EAIFR------AIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSL 128
Y G + R IQ + KPVI V A G+++ ++ +AA+ ++
Sbjct: 134 RGKDGYVGPDDAGRLNVLDLQIQIRRLPKPVIAMVAGYAVGGGHILHMVCDLTIAADNAV 193
Query: 129 VGSIGVLFQYPYVKPFLDKLGVSIKSVKSSPMKA 162
G G P V F G SI + KA
Sbjct: 194 FGQTG-----PKVGSFDAGYGSSIMARLVGQKKA 222
>gnl|CDD|180238 PRK05756, PRK05756, pyridoxamine kinase; Validated.
Length = 286
Score = 27.5 bits (62), Expect = 4.2
Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 3/51 (5%)
Query: 48 EDSQELIERIERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKP 98
E+++ I I A+ LS GSA GEAI A+++VK P
Sbjct: 57 SHLTEIVQGIADIGWLGECDAV---LSGYLGSAEQGEAILDAVRRVKAANP 104
>gnl|CDD|185312 PRK15414, PRK15414, phosphomannomutase CpsG; Provisional.
Length = 456
Score = 27.2 bits (60), Expect = 4.5
Identities = 20/65 (30%), Positives = 29/65 (44%), Gaps = 10/65 (15%)
Query: 190 VRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVGLIDVVGGQEEVWQSLYALGVDQSIRKI 249
VRL SE+ L L+ G G + +G+ G EE++ + + LGVD I
Sbjct: 47 VRLTSETLK------LALAKGLQDAGVDVLDIGM----SGTEEIYFATFHLGVDGGIEVT 96
Query: 250 KDWNP 254
NP
Sbjct: 97 ASHNP 101
>gnl|CDD|181223 PRK08074, PRK08074, bifunctional ATP-dependent DNA helicase/DNA
polymerase III subunit epsilon; Validated.
Length = 928
Score = 27.2 bits (61), Expect = 5.6
Identities = 16/65 (24%), Positives = 31/65 (47%), Gaps = 18/65 (27%)
Query: 143 PFLDKL-GVSIKSVKSSPMKAEPSPFSEVNPKAVQMMQDVVDSSYHWFVRLVSESRNIPY 201
PF+ +L G+S + VK +P F +V P+ V++++ FV + N+ +
Sbjct: 52 PFITELTGISEEMVKQAP------LFEDVAPEIVELLEGAY------FV-----AHNVHF 94
Query: 202 DKTLV 206
D +
Sbjct: 95 DLNFL 99
>gnl|CDD|183548 PRK12478, PRK12478, enoyl-CoA hydratase; Provisional.
Length = 298
Score = 26.8 bits (59), Expect = 6.0
Identities = 12/54 (22%), Positives = 25/54 (46%), Gaps = 2/54 (3%)
Query: 78 GSAYAGEAIFRAIQKVKNRKPVITEVHEMAASAGYLISCASNIIVAAETSLVGS 131
F AI + KPVI +VH + ++I++A++ +++G+
Sbjct: 96 ARETGPTQKFMAIWRAS--KPVIAQVHGWCVGGASDYALCADIVIASDDAVIGT 147
>gnl|CDD|180869 PRK07189, PRK07189, malonate decarboxylase subunit beta; Reviewed.
Length = 301
Score = 26.8 bits (60), Expect = 6.2
Identities = 24/96 (25%), Positives = 39/96 (40%), Gaps = 22/96 (22%)
Query: 53 LIERIERISRDDSATALIVSLSSPGG----SAYAGEA----IFRAIQKVKNRKPVITEVH 104
+E +R+ TA+++ + GG A AG A I RAI ++ PVI +
Sbjct: 95 ALELAAEDNRNGIPTAVLLLFET-GGVRLQEANAGLAAIAEIMRAIVDLRAAVPVIGLI- 152
Query: 105 EMAASAG------YLISCASNIIVAAETSLVGSIGV 134
G + S +IV+ E G +G+
Sbjct: 153 --GGRVGCFGGMGIAAALCSYLIVSEE----GRLGL 182
>gnl|CDD|178210 PLN02600, PLN02600, enoyl-CoA hydratase.
Length = 251
Score = 26.3 bits (58), Expect = 8.6
Identities = 15/54 (27%), Positives = 25/54 (46%), Gaps = 9/54 (16%)
Query: 57 IERISRDDSATALIVSLSSPGGSAYAGEAIFRAIQKVKNRKPV-ITEVHEMAAS 109
E+I D SA +++ S PG +F A +K R+ + +EV + S
Sbjct: 31 FEKIQADASARVVMLRSSVPG--------VFCAGADLKERRKMSPSEVQKFVNS 76
>gnl|CDD|130811 TIGR01750, fabZ, beta-hydroxyacyl-[acyl carrier protein]
dehydratase FabZ. This enzyme, FabZ, shows overlapping
substrate specificity with FabA with regard to chain
length in fatty acid biosynthesis. FabZ works
preferentially on shorter chains and is often designated
(3R)-hydroxymyristoyl-[acyl carrier protein]
dehydratase, although its actual specificity is broader.
Unlike FabA, FabZ does not function as an isomerase and
cannot initiate unsaturated fatty acid biosynthesis.
However, only FabZ can act during the elongation of
unsaturated fatty acid chains.
Length = 140
Score = 26.5 bits (59), Expect = 9.1
Identities = 11/35 (31%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Query: 67 TALIVSLSSPGGSAYAGE-AIFRAIQKVKNRKPVI 100
++++ S GG G+ F I K K R+PV+
Sbjct: 65 AGGVLAILSLGGEIGKGKLVYFAGIDKAKFRRPVV 99
>gnl|CDD|180625 PRK06563, PRK06563, enoyl-CoA hydratase; Provisional.
Length = 255
Score = 26.5 bits (59), Expect = 9.7
Identities = 9/31 (29%), Positives = 17/31 (54%)
Query: 96 RKPVITEVHEMAASAGYLISCASNIIVAAET 126
KP++ V + G + A++I+VAA+
Sbjct: 92 SKPLVVAVQGYCLTLGIELMLAADIVVAADN 122
Database: CddB
Posted date: Feb 4, 2011 9:54 PM
Number of letters in database: 5,994,473
Number of sequences in database: 21,608
Lambda K H
0.317 0.132 0.389
Gapped
Lambda K H
0.267 0.0703 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 4,674,202
Number of extensions: 289384
Number of successful extensions: 777
Number of sequences better than 10.0: 1
Number of HSP's gapped: 767
Number of HSP's successfully gapped: 54
Length of query: 293
Length of database: 5,994,473
Length adjustment: 93
Effective length of query: 200
Effective length of database: 3,984,929
Effective search space: 796985800
Effective search space used: 796985800
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (25.8 bits)