HHsearch alignment for GI: 254780748 and conserved domain: COG0776

>COG0776 HimA Bacterial nucleoid DNA-binding protein [DNA replication, recombination, and repair].

Probab=99.94  E-value=3.8e-26  Score=187.65  Aligned_cols=92  Identities=50%  Similarity=0.767  Sum_probs=90.0

Q ss_pred             CCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCCCEECCCCCCEEEECCCCEEEE
Q ss_conf             98899999999973899989999999999999999986498512034578886214654102588988899468734676
Q gi|254780748|r    1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLARAPLAQKVISVEEKMVPFF   80 (100)
Q Consensus         1 MtK~eli~~ia~~~~~ls~~~~~~~vd~~~~~i~~~L~~~~~V~i~gfGtF~~~~~~~r~~rNP~Tge~i~i~~~~~v~F   80 (100)
T Consensus         2 mtKseli~~ia~~~-~l~k~~a~~~v~~~~~~i~~aL~~G~~V~l~gFG~F~v~~R~aR~GRNPkTGe~i~I~a~~vp~F   80 (94)
T COG0776           2 MTKSELIDAIAEKA-GLSKKDAEEAVDAFLEEITEALAKGERVELRGFGTFEVRERAARTGRNPKTGEEIKIPAKKVPKF   80 (94)
T ss_pred             CCHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEEEEECCCCCCCCCCCCCCEEEECCCCCCCC
T ss_conf             87899999999970-98799999999999999999997699489830046676202787787999998686357523355


Q ss_pred             CCCHHHHHHHCCC
Q ss_conf             2698999970786
Q gi|254780748|r   81 RAGKNLKERLNSP   93 (100)
Q Consensus        81 k~sk~lk~~iN~~   93 (100)
T Consensus        81 k~gK~LK~~vn~~   93 (94)
T COG0776          81 KPGKALKDAVNGA   93 (94)
T ss_pred             CCCHHHHHHHHCC
T ss_conf             8768999988334