HHsearch alignment for GI: 254780748 and conserved domain: TIGR00988
>TIGR00988 hip integration host factor, beta subunit; InterPro: IPR005685 Integration host factor (IHF) is a heterodimeric protein consisting of alpha (IPR005684 from INTERPRO) and beta subunits. IHF binds the minor groove of DNA in a sequence-specific manner to induce a large bend. This bending stabilises distinct DNA conformations that are required during several bacterial processes, such as recombination, transposition, replication and transcription .; GO: 0003677 DNA binding, 0005694 chromosome.
Probab=99.92 E-value=9.1e-26 Score=185.25 Aligned_cols=94 Identities=49% Similarity=0.771 Sum_probs=92.1
Q ss_pred CCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCCCEECCCCCCEEEECCCCEEEE
Q ss_conf 98899999999973899989999999999999999986498512034578886214654102588988899468734676
Q gi|254780748|r 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLARAPLAQKVISVEEKMVPFF 80 (100)
Q Consensus 1 MtK~eli~~ia~~~~~ls~~~~~~~vd~~~~~i~~~L~~~~~V~i~gfGtF~~~~~~~r~~rNP~Tge~i~i~~~~~v~F 80 (100)
T Consensus 1 M~kSELI~~i~~~~~~l~~k~VE~~v~~~lE~~~~alA~GdRiE~RGFGsFSl~~R~~R~GRNPkTG~~V~ld~K~VP~F 80 (94)
T TIGR00988 1 MTKSELIERIATEQSHLFAKDVEKAVKTMLEEMIEALARGDRIEIRGFGSFSLHYRAPRTGRNPKTGESVALDGKYVPHF 80 (94)
T ss_pred CCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCEEECCCCCCCCCCCCCCCEEEECCCCCCCC
T ss_conf 93378889987407875533389999999999999860798467601442000005788898899887665478042840
Q ss_pred CCCHHHHHHHCCCC
Q ss_conf 26989999707861
Q gi|254780748|r 81 RAGKNLKERLNSPD 94 (100)
Q Consensus 81 k~sk~lk~~iN~~~ 94 (100)
T Consensus 81 K~GK~LRDR~N~~e 94 (94)
T TIGR00988 81 KPGKELRDRLNEGE 94 (94)
T ss_pred CCCCCHHCCCCCCC
T ss_conf 48630110047889