HHsearch alignment for GI: 254780748 and conserved domain: TIGR01201
>TIGR01201 HU_rel DNA-binding protein, putative; InterPro: IPR005902 This family of proteins is related to, but longer than, DNA-binding protein HU. It contains a distinctive domain architecture when compared to HU and related histone-like DNA-binding. Members include, so far, a protein from Bacteroides fragilis and ten from Porphyromonas gingivalis (Bacteroides gingivalis). Both species are oral pathogens. .
Probab=97.90 E-value=3.8e-05 Score=54.40 Aligned_cols=79 Identities=23% Similarity=0.292 Sum_probs=65.8
Q ss_pred CHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCCCEECCCCCC---EEEECC--CC
Q ss_conf 8899999999973899989999999999999999986498512034578886214654102588988---899468--73
Q gi|254780748|r 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLARAPLAQK---VISVEE--KM 76 (100)
Q Consensus 2 tK~eli~~ia~~~~~ls~~~~~~~vd~~~~~i~~~L~~~~~V~i~gfGtF~~~~~~~r~~rNP~Tge---~i~i~~--~~ 76 (100)
T Consensus 35 ~~~~~~~~ia~~S-~~s~GDV~~i~~~L~~~l~~eL~~G~~v~lg~~G~FR~~~-~~kg-~~ve~~eGGt~v~~~~~~~~ 111 (198)
T TIGR01201 35 DFEEIAELIAEES-SLSPGDVKGILDRLAYVLRRELASGKTVRLGEIGTFRLSA-TAKG-SGVEEAEGGTEVSAEQVKKA 111 (198)
T ss_pred CHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHHHHHHCCCCEEEECCCEEEEEEE-EECC-CCCCCCCCCCCCCHHHHCCC
T ss_conf 3789999986764-6885689999999999999971379869874732589986-1032-43646677821167652122
Q ss_pred EEEECCC
Q ss_conf 4676269
Q gi|254780748|r 77 VPFFRAG 83 (100)
Q Consensus 77 ~v~Fk~s 83 (100)
T Consensus 112 rv~F~p~ 118 (198)
T TIGR01201 112 RVLFTPE 118 (198)
T ss_pred CEEECCC
T ss_conf 2154223