HHsearch alignment for GI: 254780748 and conserved domain: cd00591
>cd00591 HU_IHF Integration host factor (IHF) and HU are small heterodimeric members of the DNABII protein family that bind and bend DNA, functioning as architectural factors in many cellular processes including transcription, site-specific recombination, and higher-order nucleoprotein complex assembly. The dimer subunits associate to form a compact globular core from which two beta ribbon arms (one from each subunit) protrude. The beta arms track and bind the DNA minor groove. Despite sequence and structural similarity, IHF and HU can be distinguished by their different DNA substrate preferences.
Probab=99.89 E-value=6.7e-23 Score=167.07 Aligned_cols=87 Identities=45% Similarity=0.674 Sum_probs=84.8
Q ss_pred CHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCCCEECCCCCCEEEECCCCEEEEC
Q ss_conf 88999999999738999899999999999999999864985120345788862146541025889888994687346762
Q gi|254780748|r 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLARAPLAQKVISVEEKMVPFFR 81 (100)
Q Consensus 2 tK~eli~~ia~~~~~ls~~~~~~~vd~~~~~i~~~L~~~~~V~i~gfGtF~~~~~~~r~~rNP~Tge~i~i~~~~~v~Fk 81 (100)
T Consensus 1 TK~dLi~~ia~~~-~~s~~~~~~~v~~~~~~i~~~L~~~~~V~i~~fG~F~~~~~~~r~grNP~Tge~i~i~~~~~v~Fk 79 (87)
T cd00591 1 TKSELIEAIAEKT-GLSKKDAEAAVDAFLDVITEALAKGEKVELPGFGTFEVRERAARTGRNPKTGEEIKIPAKKVVKFK 79 (87)
T ss_pred CHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHHHHHHHCCCEEEECCCEEEEEEEECCEEEECCCCCCEEEECCCCCEEEC
T ss_conf 9899999999986-969999999999999999999977996996360799999825624488899988997597667975
Q ss_pred CCHHHHHH
Q ss_conf 69899997
Q gi|254780748|r 82 AGKNLKER 89 (100)
Q Consensus 82 ~sk~lk~~ 89 (100)
T Consensus 80 ~sk~lK~~ 87 (87)
T cd00591 80 PGKALKDA 87 (87)
T ss_pred CCHHHCCC
T ss_conf 08787179