HHsearch alignment of GI: 254780748 and MMDB domain: 1p71_A_

>1p71_A (A:) DNA-binding protein HU; protein-DNA complex, DNA bending, DNA binding protein/DNA complex; 1.90A {Anabaena SP}
Probab=99.92  E-value=6.6e-25  Score=179.38  Aligned_cols=94  Identities=31%  Similarity=0.592  Sum_probs=91.5

Q ss_pred             CCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCCCEECCCCCCEEEECCCCEEEE
Q ss_conf             98899999999973899989999999999999999986498512034578886214654102588988899468734676
Q gi|254780748|r    1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLARAPLAQKVISVEEKMVPFF   80 (100)
Q Consensus         1 MtK~eli~~ia~~~~~ls~~~~~~~vd~~~~~i~~~L~~~~~V~i~gfGtF~~~~~~~r~~rNP~Tge~i~i~~~~~v~F   80 (100)
                      |||+|||+.||+++ ++++++++.++|+|++.|.++|.+|+.|+|+|||+|+++.+++|.|+||+|||.+.||++++|+|
T Consensus         1 MtK~eli~~ia~~~-~ls~~~v~~~i~~~~~~i~~~L~~~~~V~l~~fG~F~v~~~~~r~~~Np~Tge~i~i~~~~~v~F   79 (94)
T 1p71_A            1 MNKGELVDAVAEKA-SVTKKQADAVLTAALETIIEAVSSGDKVTLVGFGSFESRERKAREGRNPKTNEKMEIPATRVPAF   79 (94)
T ss_dssp             CBHHHHHHHHHHHH-TCCHHHHHHHHHHHHHHHHHHHHTTCCEEETTTEEEEEEEECCEEEECTTTCCEEEECCEEEEEE
T ss_pred             CCHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHHHHHHHCCCCCEECCEEEEEEEEECCCEEECCCCCCEEEECCCCCEEE
T ss_conf             98899999999845-97999999999999999999986488605035269999983672328979997899648740899


Q ss_pred             CCCHHHHHHHCCCCC
Q ss_conf             269899997078610
Q gi|254780748|r   81 RAGKNLKERLNSPDS   95 (100)
Q Consensus        81 k~sk~lk~~iN~~~~   95 (100)
                      +||+.|+++||+..+
T Consensus        80 kpsk~lk~~in~~~a   94 (94)
T 1p71_A           80 SAGKLFREKVAPPKA   94 (94)
T ss_dssp             EECHHHHHHHSCCCC
T ss_pred             ECCHHHHHHHCCCCC
T ss_conf             549899997577899