HHsearch alignment of GI: 254780748 and MMDB domain: 3c4i_A_
>3c4i_A (A:) DNA-binding protein HU homolog; dimerization by four helix bundle interaction, DNA condensation; 2.04A {Mycobacterium tuberculosis}
Probab=99.91 E-value=6.7e-24 Score=172.98 Aligned_cols=97 Identities=30% Similarity=0.507 Sum_probs=93.3
Q ss_pred CCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCCCEECCCCCCEEEECCCCEEEE
Q ss_conf 98899999999973899989999999999999999986498512034578886214654102588988899468734676
Q gi|254780748|r 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLARAPLAQKVISVEEKMVPFF 80 (100)
Q Consensus 1 MtK~eli~~ia~~~~~ls~~~~~~~vd~~~~~i~~~L~~~~~V~i~gfGtF~~~~~~~r~~rNP~Tge~i~i~~~~~v~F 80 (100)
|||+|||..||+++ ++|+.++..++|+|++.|.++|.+|+.|+|+|||+|+++.+++|.++||+|||.+.+|++++|+|
T Consensus 1 Mtk~eli~~ia~~~-~~s~~~v~~~i~~~~~~i~~~L~~g~~V~l~~fG~F~~~~~~~r~~~np~T~e~i~i~~k~~v~F 79 (99)
T 3c4i_A 1 MNKAELIDVLTQKL-GSDRRQATAAVENVVDTIVRAVHKGDSVTITGFGVFEQRRRAARVARNPRTGETVKVKPTSVPAF 79 (99)
T ss_dssp CBHHHHHHHHHHHH-TCCHHHHHHHHHHHHHHHHHHHHTTCCEEETTTEEEEEEEECSEEEECTTTCCEEEECCEEEEEE
T ss_pred CCHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHHHHHHHCCCCEECCCEEEEEEEEECCEEEECCCCCCEEEECCCCEEEE
T ss_conf 97899999999874-98999999999999999999996499613155689999875681106859998898638722899
Q ss_pred CCCHHHHHHHCCCCCCCC
Q ss_conf 269899997078610012
Q gi|254780748|r 81 RAGKNLKERLNSPDSTLS 98 (100)
Q Consensus 81 k~sk~lk~~iN~~~~~~~ 98 (100)
+||+.|++.||.......
T Consensus 80 kpsk~Lk~~in~~~~~~~ 97 (99)
T 3c4i_A 80 RPGAQFKAVVSGAQRLPA 97 (99)
T ss_dssp EECHHHHHHHHTSSCCCC
T ss_pred ECCHHHHHHHCCCCCCCC
T ss_conf 629899998666668999