HHsearch results for GI: 254780748 and protein with PDBid: 3c4i_A
>3c4i_A DNA-binding protein HU homolog; dimerization by four helix bundle interaction, DNA condensation; 2.04A {Mycobacterium tuberculosis}
Probab=99.93 E-value=1.9e-25 Score=181.86 Aligned_cols=95 Identities=31% Similarity=0.522 Sum_probs=92.0
Q ss_pred CCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCCCEECCCCCCEEEECCCCEEEE
Q ss_conf 98899999999973899989999999999999999986498512034578886214654102588988899468734676
Q gi|254780748|r 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLARAPLAQKVISVEEKMVPFF 80 (100)
Q Consensus 1 MtK~eli~~ia~~~~~ls~~~~~~~vd~~~~~i~~~L~~~~~V~i~gfGtF~~~~~~~r~~rNP~Tge~i~i~~~~~v~F 80 (100)
|||+|||+.||+++ ++++++++.++|+|++.|.++|.+|++|+|+|||+|+++.+++|.||||+|||.++||++++|+|
T Consensus 1 MtK~eli~~la~~~-~lsk~~~~~~v~~~~~~i~~~L~~~~~V~i~gfG~F~~~~~~~r~~rNP~Tge~i~i~~k~~v~F 79 (99)
T 3c4i_A 1 MNKAELIDVLTQKL-GSDRRQATAAVENVVDTIVRAVHKGDSVTITGFGVFEQRRRAARVARNPRTGETVKVKPTSVPAF 79 (99)
T ss_dssp CBHHHHHHHHHHHH-TCCHHHHHHHHHHHHHHHHHHHHTTCCEEETTTEEEEEEEECSEEEECTTTCCEEEECCEEEEEE
T ss_pred CCHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHHHHHHHCCCCEECCCEEEEEEEEECCEEEECCCCCCEEEECCCCEEEE
T ss_conf 97899999999874-98999999999999999999996499613155689999875681106859998898638722899
Q ss_pred CCCHHHHHHHCCCCCC
Q ss_conf 2698999970786100
Q gi|254780748|r 81 RAGKNLKERLNSPDST 96 (100)
Q Consensus 81 k~sk~lk~~iN~~~~~ 96 (100)
+||+.||+.||....-
T Consensus 80 kpsk~LK~~vn~~~~~ 95 (99)
T 3c4i_A 80 RPGAQFKAVVSGAQRL 95 (99)
T ss_dssp EECHHHHHHHHTSSCC
T ss_pred ECCHHHHHHHCCCCCC
T ss_conf 6298999986666689