Query gi|254780748|ref|YP_003065161.1| integration host factor, beta subunit [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 100
No_of_seqs 101 out of 3065
Neff 6.7
Searched_HMMs 23785
Date Mon May 30 13:42:57 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780748.hhm -d /home/congqian_1/database/pdb/pdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1owf_B IHF-beta, integration H 99.9 3.1E-26 1.3E-30 186.8 10.9 93 1-93 1-93 (94)
2 1p71_A DNA-binding protein HU; 99.9 4.5E-26 1.9E-30 185.8 10.9 94 1-95 1-94 (94)
3 1owf_A IHF-alpha, integration 99.9 1.5E-25 6.4E-30 182.4 10.3 95 1-96 3-97 (99)
4 3c4i_A DNA-binding protein HU 99.9 1.9E-25 7.9E-30 181.9 10.7 95 1-96 1-95 (99)
5 2o97_B NS1, HU-1, DNA-binding 99.9 1.4E-25 5.8E-30 182.7 8.7 90 1-91 1-90 (90)
6 2iie_A Integration HOST factor 99.9 1.6E-25 6.8E-30 182.3 7.7 95 1-96 47-141 (204)
7 2np2_A HBB; protein-DNA comple 99.9 6.6E-25 2.8E-29 178.4 8.0 95 1-95 9-108 (108)
8 1mul_A NS2, HU-2, DNA binding 99.9 1.2E-24 5.1E-29 176.7 9.0 90 1-91 1-90 (90)
9 1exe_A Transcription factor 1; 99.9 7.5E-26 3.2E-30 184.4 2.8 95 1-96 1-95 (99)
10 1hue_A HU protein; DNA-binding 99.9 1.1E-24 4.7E-29 176.9 8.5 90 1-91 1-90 (90)
11 1b8z_A Protein (histonelike pr 99.9 1E-24 4.2E-29 177.3 7.6 90 1-91 1-90 (90)
12 2iie_A Integration HOST factor 99.6 6.6E-16 2.8E-20 121.3 6.5 63 34-96 135-197 (204)
13 1jeo_A MJ1247, hypothetical pr 49.7 7.4 0.00031 19.5 2.2 50 1-50 1-50 (180)
14 2tpt_A Thymidine phosphorylase 40.4 21 0.00089 16.6 4.1 30 1-31 2-31 (440)
15 1i27_A Transcription factor II 39.6 14 0.00058 17.7 2.3 33 1-33 24-56 (73)
16 1nha_A TFIIF-alpha, transcript 36.4 22 0.00091 16.5 2.8 33 1-33 33-65 (82)
17 1z67_A Hypothetical protein S4 29.9 31 0.0013 15.5 5.1 40 4-44 75-114 (135)
18 1x92_A APC5045, phosphoheptose 29.4 26 0.0011 16.0 2.3 50 1-50 3-55 (199)
19 1o17_A Anthranilate PRT, anthr 28.2 33 0.0014 15.3 3.6 30 1-31 1-30 (345)
20 1tk9_A Phosphoheptose isomeras 27.2 33 0.0014 15.3 2.5 50 1-50 1-52 (188)
21 1whu_A Polynucleotide phosphor 24.3 39 0.0016 14.9 5.0 44 3-46 52-95 (104)
22 2dsj_A Pyrimidine-nucleoside ( 23.9 40 0.0017 14.8 3.6 30 1-31 1-30 (423)
23 3h5q_A PYNP, pyrimidine-nucleo 22.4 43 0.0018 14.6 2.8 30 1-31 4-33 (436)
24 1brw_A PYNP, protein (pyrimidi 21.3 45 0.0019 14.5 3.6 30 1-31 1-30 (433)
No 1
>1owf_B IHF-beta, integration HOST factor beta-subunit; protein-DNA recognition, indirect readout, DNA bending, minor groove; 1.95A {Escherichia coli} SCOP: a.55.1.1 PDB: 1ouz_B 2ht0_B 1ihf_B 1owg_B
Probab=99.93 E-value=3.1e-26 Score=186.81 Aligned_cols=93 Identities=42% Similarity=0.669 Sum_probs=90.7
Q ss_pred CCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCCCEECCCCCCEEEECCCCEEEE
Q ss_conf 98899999999973899989999999999999999986498512034578886214654102588988899468734676
Q gi|254780748|r 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLARAPLAQKVISVEEKMVPFF 80 (100)
Q Consensus 1 MtK~eli~~ia~~~~~ls~~~~~~~vd~~~~~i~~~L~~~~~V~i~gfGtF~~~~~~~r~~rNP~Tge~i~i~~~~~v~F 80 (100)
|||+|||+.||.+++++++++++.++|+|++.|.++|.+|++|+|+|||+|+++.+++|.||||+|||.++|||+++|+|
T Consensus 1 MtK~eli~~ia~~~~~ls~~~~~~~v~~~~~~i~~~L~~~~~V~i~gfG~F~~~~~~~R~~rNPkTge~i~ip~k~~v~F 80 (94)
T 1owf_B 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIAIRGFGSFSLHYRAPRTGRNPKTGDKVELEGKYVPHF 80 (94)
T ss_dssp CBHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHHHHTTCCEEETTTEEEEEEEECCEEEECTTTCCEEEECCEEEEEE
T ss_pred CCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEECCEEEEEEEEECCCEEECCCCCCEEEECCCCCEEE
T ss_conf 97899999999867999999999999999999999997699599444089999983670137839998898648631898
Q ss_pred CCCHHHHHHHCCC
Q ss_conf 2698999970786
Q gi|254780748|r 81 RAGKNLKERLNSP 93 (100)
Q Consensus 81 k~sk~lk~~iN~~ 93 (100)
+||+.|+++||..
T Consensus 81 k~sk~lk~~vN~~ 93 (94)
T 1owf_B 81 KPGKELRDRANIY 93 (94)
T ss_dssp EECHHHHHHHCCC
T ss_pred ECCHHHHHHHCCC
T ss_conf 1798999987559
No 2
>1p71_A DNA-binding protein HU; protein-DNA complex, DNA bending, DNA binding protein/DNA complex; 1.90A {Anabaena SP} SCOP: a.55.1.1 PDB: 1p51_A 1p78_A
Probab=99.93 E-value=4.5e-26 Score=185.78 Aligned_cols=94 Identities=31% Similarity=0.592 Sum_probs=91.8
Q ss_pred CCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCCCEECCCCCCEEEECCCCEEEE
Q ss_conf 98899999999973899989999999999999999986498512034578886214654102588988899468734676
Q gi|254780748|r 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLARAPLAQKVISVEEKMVPFF 80 (100)
Q Consensus 1 MtK~eli~~ia~~~~~ls~~~~~~~vd~~~~~i~~~L~~~~~V~i~gfGtF~~~~~~~r~~rNP~Tge~i~i~~~~~v~F 80 (100)
|||+|||..||+++ ++++++++.++|+|+++|.++|.+|++|+|+|||+|+++.+++|.||||+|||.+.||++++|+|
T Consensus 1 M~K~eLi~~ia~~~-~~s~~~~~~~v~~~~~~i~~~L~~~~~V~l~gfG~F~~~~~~~r~~rNP~Tge~i~ip~k~~v~F 79 (94)
T 1p71_A 1 MNKGELVDAVAEKA-SVTKKQADAVLTAALETIIEAVSSGDKVTLVGFGSFESRERKAREGRNPKTNEKMEIPATRVPAF 79 (94)
T ss_dssp CBHHHHHHHHHHHH-TCCHHHHHHHHHHHHHHHHHHHHTTCCEEETTTEEEEEEEECCEEEECTTTCCEEEECCEEEEEE
T ss_pred CCHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHHHHHHHCCCCEEECCEEEEEEEEECCEEEECCCCCCEEEECCCCEEEE
T ss_conf 98899999999855-96999999999999999999985499667137169999984580204869998898648730898
Q ss_pred CCCHHHHHHHCCCCC
Q ss_conf 269899997078610
Q gi|254780748|r 81 RAGKNLKERLNSPDS 95 (100)
Q Consensus 81 k~sk~lk~~iN~~~~ 95 (100)
+||+.|+++||++.+
T Consensus 80 k~sk~lk~~vN~~ka 94 (94)
T 1p71_A 80 SAGKLFREKVAPPKA 94 (94)
T ss_dssp EECHHHHHHHSCCCC
T ss_pred ECCHHHHHHHCCCCC
T ss_conf 159899997676889
No 3
>1owf_A IHF-alpha, integration HOST factor alpha-subunit; protein-DNA recognition, indirect readout, DNA bending, minor groove; 1.95A {Escherichia coli} SCOP: a.55.1.1 PDB: 1ouz_A 1ihf_A 1owg_A 2ht0_A
Probab=99.93 E-value=1.5e-25 Score=182.44 Aligned_cols=95 Identities=29% Similarity=0.563 Sum_probs=92.3
Q ss_pred CCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCCCEECCCCCCEEEECCCCEEEE
Q ss_conf 98899999999973899989999999999999999986498512034578886214654102588988899468734676
Q gi|254780748|r 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLARAPLAQKVISVEEKMVPFF 80 (100)
Q Consensus 1 MtK~eli~~ia~~~~~ls~~~~~~~vd~~~~~i~~~L~~~~~V~i~gfGtF~~~~~~~r~~rNP~Tge~i~i~~~~~v~F 80 (100)
|||+|||+.||+++ ++++++++.++|.|+++|.++|..|++|+|+|||+|+++.+++|.||||+|||.+.||++++|+|
T Consensus 3 mTK~eli~~ia~~~-~lsk~~~~~~v~~~~~~i~~~L~~g~~V~l~gfGtF~~~~r~~r~~rNP~Tge~i~ip~k~~v~F 81 (99)
T 1owf_A 3 LTKAEMSEYLFDKL-GLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPGRNPKTGEDIPITARRVVTF 81 (99)
T ss_dssp BCHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHHHHHHHTTCCEEETTTEEEEEEEECCEEEECSSSCCEEEECCEEEEEE
T ss_pred CCHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEEEEEEECCEEEECCCCCCEEEECCCCEEEE
T ss_conf 06999999999984-98999999999999999999997799799710789999877682026889998899638722999
Q ss_pred CCCHHHHHHHCCCCCC
Q ss_conf 2698999970786100
Q gi|254780748|r 81 RAGKNLKERLNSPDST 96 (100)
Q Consensus 81 k~sk~lk~~iN~~~~~ 96 (100)
+||+.|+++||+...+
T Consensus 82 k~sk~Lk~~vn~~~~~ 97 (99)
T 1owf_A 82 RPGQKLKSRVENASPK 97 (99)
T ss_dssp EECHHHHHHHHTCCCC
T ss_pred EECHHHHHHHCCCCCC
T ss_conf 7499999998088978
No 4
>3c4i_A DNA-binding protein HU homolog; dimerization by four helix bundle interaction, DNA condensation; 2.04A {Mycobacterium tuberculosis}
Probab=99.93 E-value=1.9e-25 Score=181.86 Aligned_cols=95 Identities=31% Similarity=0.522 Sum_probs=92.0
Q ss_pred CCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCCCEECCCCCCEEEECCCCEEEE
Q ss_conf 98899999999973899989999999999999999986498512034578886214654102588988899468734676
Q gi|254780748|r 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLARAPLAQKVISVEEKMVPFF 80 (100)
Q Consensus 1 MtK~eli~~ia~~~~~ls~~~~~~~vd~~~~~i~~~L~~~~~V~i~gfGtF~~~~~~~r~~rNP~Tge~i~i~~~~~v~F 80 (100)
|||+|||+.||+++ ++++++++.++|+|++.|.++|.+|++|+|+|||+|+++.+++|.||||+|||.++||++++|+|
T Consensus 1 MtK~eli~~la~~~-~lsk~~~~~~v~~~~~~i~~~L~~~~~V~i~gfG~F~~~~~~~r~~rNP~Tge~i~i~~k~~v~F 79 (99)
T 3c4i_A 1 MNKAELIDVLTQKL-GSDRRQATAAVENVVDTIVRAVHKGDSVTITGFGVFEQRRRAARVARNPRTGETVKVKPTSVPAF 79 (99)
T ss_dssp CBHHHHHHHHHHHH-TCCHHHHHHHHHHHHHHHHHHHHTTCCEEETTTEEEEEEEECSEEEECTTTCCEEEECCEEEEEE
T ss_pred CCHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHHHHHHHCCCCEECCCEEEEEEEEECCEEEECCCCCCEEEECCCCEEEE
T ss_conf 97899999999874-98999999999999999999996499613155689999875681106859998898638722899
Q ss_pred CCCHHHHHHHCCCCCC
Q ss_conf 2698999970786100
Q gi|254780748|r 81 RAGKNLKERLNSPDST 96 (100)
Q Consensus 81 k~sk~lk~~iN~~~~~ 96 (100)
+||+.||+.||....-
T Consensus 80 kpsk~LK~~vn~~~~~ 95 (99)
T 3c4i_A 80 RPGAQFKAVVSGAQRL 95 (99)
T ss_dssp EECHHHHHHHHTSSCC
T ss_pred ECCHHHHHHHCCCCCC
T ss_conf 6298999986666689
No 5
>2o97_B NS1, HU-1, DNA-binding protein HU-beta; heterodimer, DNA structure, DNA supercoiling, E. coli; 2.45A {Escherichia coli} SCOP: a.55.1.1
Probab=99.92 E-value=1.4e-25 Score=182.74 Aligned_cols=90 Identities=38% Similarity=0.627 Sum_probs=88.5
Q ss_pred CCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCCCEECCCCCCEEEECCCCEEEE
Q ss_conf 98899999999973899989999999999999999986498512034578886214654102588988899468734676
Q gi|254780748|r 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLARAPLAQKVISVEEKMVPFF 80 (100)
Q Consensus 1 MtK~eli~~ia~~~~~ls~~~~~~~vd~~~~~i~~~L~~~~~V~i~gfGtF~~~~~~~r~~rNP~Tge~i~i~~~~~v~F 80 (100)
|||+|||+.||+++ ++++++++.++|+|+++|.++|.+|++|+|+|||+|+++.+++|.||||+|||.++||++++|+|
T Consensus 1 M~K~eLi~~ia~~~-~ls~~~~~~~v~~~~~~i~~~L~~~~~V~i~gfG~F~~~~~~~R~~rNP~Tge~i~ip~k~~v~F 79 (90)
T 2o97_B 1 MNKSQLIDKIAAGA-DISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTGRNPQTGKEITIAAAKVPSF 79 (90)
T ss_dssp CBHHHHHHHHHHTT-C-CHHHHHHHHHHHHHHHHHHHHTTCCEEETTTEEEEEECCC------------------CEEEE
T ss_pred CCHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHHHHHHHCCCCCEECEEEEEEEEEECCEEEECCCCCCEEEECCCCEEEE
T ss_conf 97899999999722-98999999999999999999997399866330679999986673506879998899748730899
Q ss_pred CCCHHHHHHHC
Q ss_conf 26989999707
Q gi|254780748|r 81 RAGKNLKERLN 91 (100)
Q Consensus 81 k~sk~lk~~iN 91 (100)
+||+.|++.||
T Consensus 80 kpsk~lk~~vN 90 (90)
T 2o97_B 80 RAGKALKDAVN 90 (90)
T ss_dssp EECHHHHHHCC
T ss_pred ECCHHHHHHHC
T ss_conf 61989998639
No 6
>2iie_A Integration HOST factor; DNA kinking, bending, U-turn, intercalation, divalent, metal, recombination/DNA complex; HET: DNA; 2.41A {Escherichia coli} PDB: 2iif_A*
Probab=99.92 E-value=1.6e-25 Score=182.27 Aligned_cols=95 Identities=29% Similarity=0.558 Sum_probs=91.6
Q ss_pred CCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCCCEECCCCCCEEEECCCCEEEE
Q ss_conf 98899999999973899989999999999999999986498512034578886214654102588988899468734676
Q gi|254780748|r 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLARAPLAQKVISVEEKMVPFF 80 (100)
Q Consensus 1 MtK~eli~~ia~~~~~ls~~~~~~~vd~~~~~i~~~L~~~~~V~i~gfGtF~~~~~~~r~~rNP~Tge~i~i~~~~~v~F 80 (100)
|||+|||+.||+++ ++++++++.++|+|+++|.++|.+|++|+|+|||+|+++.+++|.||||+|||.++||++++|+|
T Consensus 47 mTK~ELi~~Ia~~t-glSkkda~~ivd~f~d~I~e~L~~g~~V~L~gFGtF~vk~rkaR~grNPkTgE~i~IpakkvVkF 125 (204)
T 2iie_A 47 LTKAEMSEYLFDKL-GLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPGRNPKTGEDIPITARRVVTF 125 (204)
T ss_dssp BCHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHHHHHHHTTCEEEETTTEEEEEEEECCBCCBCTTTCCBCCBCCEEEEEE
T ss_pred CCHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEEEEEEECCEEEECCCCCCEEEECCCCCEEE
T ss_conf 36999999999986-97999999999999999999986498698850578999887570105869998898548641798
Q ss_pred CCCHHHHHHHCCCCCC
Q ss_conf 2698999970786100
Q gi|254780748|r 81 RAGKNLKERLNSPDST 96 (100)
Q Consensus 81 k~sk~lk~~iN~~~~~ 96 (100)
+||+.|++.||+..+.
T Consensus 126 KpsK~LK~~VN~~~qg 141 (204)
T 2iie_A 126 RPGQKLKSRVENAGGG 141 (204)
T ss_dssp EECHHHHHHHHHHCCC
T ss_pred ECCHHHHHHHHCCCCC
T ss_conf 1099999998587878
No 7
>2np2_A HBB; protein-DNA complex, DNA-binding protein, DNA-bending protein, dnabii family, HU/IHF family, DNA binding protein/DNA complex; 3.02A {Borrelia burgdorferi}
Probab=99.91 E-value=6.6e-25 Score=178.39 Aligned_cols=95 Identities=35% Similarity=0.590 Sum_probs=90.1
Q ss_pred CCHHHHHHHHHHH----CCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCC-CEECCCCCCEEEECCC
Q ss_conf 9889999999997----3899989999999999999999986498512034578886214654-1025889888994687
Q gi|254780748|r 1 MIKSSLIGTIAKK----NPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAAR-LARAPLAQKVISVEEK 75 (100)
Q Consensus 1 MtK~eli~~ia~~----~~~ls~~~~~~~vd~~~~~i~~~L~~~~~V~i~gfGtF~~~~~~~r-~~rNP~Tge~i~i~~~ 75 (100)
|||+|||+.||++ ++++++++++.++|.|+++|.++|.+|++|+|+|||+|+++.+++| .||||+|||.+.||++
T Consensus 9 mtK~dli~~ia~~~~~~~~~lsk~~~~~~vd~~~~~I~~~L~~g~~V~i~gFGtF~~k~r~~R~~~rNPkTge~i~i~~~ 88 (108)
T 2np2_A 9 VTKSDIVDQIALNIKNNNLKLEKKYIRLVIDAFFEELKSNLCSNNVIEFRSFGTFEVRKRKGRLNARNPQTGEYVKVLDH 88 (108)
T ss_dssp EEHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHTTCEEEETTTEEEEEEEECCBSSCBCTTTCCBCCBCCE
T ss_pred CCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEECCEEEEEEECCCCCCCCCCCCCCEEEECCC
T ss_conf 65999999999750223489689999999999999999999779959973588998871058766619499988885487
Q ss_pred CEEEECCCHHHHHHHCCCCC
Q ss_conf 34676269899997078610
Q gi|254780748|r 76 MVPFFRAGKNLKERLNSPDS 95 (100)
Q Consensus 76 ~~v~Fk~sk~lk~~iN~~~~ 95 (100)
++|+|+||+.|+++||+..+
T Consensus 89 ~~v~Fk~sk~lk~~vn~~k~ 108 (108)
T 2np2_A 89 HVAYFRPGKDLKERVWGIKG 108 (108)
T ss_dssp EEEEEEECHHHHHHHHSCC-
T ss_pred CCEEECCCHHHHHHHCCCCC
T ss_conf 66787279899999705689
No 8
>1mul_A NS2, HU-2, DNA binding protein HU-alpha; histone-like; HET: DNA; 2.30A {Escherichia coli} SCOP: a.55.1.1 PDB: 2o97_A
Probab=99.91 E-value=1.2e-24 Score=176.75 Aligned_cols=90 Identities=36% Similarity=0.573 Sum_probs=87.9
Q ss_pred CCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCCCEECCCCCCEEEECCCCEEEE
Q ss_conf 98899999999973899989999999999999999986498512034578886214654102588988899468734676
Q gi|254780748|r 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLARAPLAQKVISVEEKMVPFF 80 (100)
Q Consensus 1 MtK~eli~~ia~~~~~ls~~~~~~~vd~~~~~i~~~L~~~~~V~i~gfGtF~~~~~~~r~~rNP~Tge~i~i~~~~~v~F 80 (100)
|||+|||+.||+++ ++++++++.++|+|++.|.++|.+|++|+|+|||+|+++.+++|.||||+|||.++||++++|+|
T Consensus 1 M~K~eli~~la~~~-~~~~~~~~~~v~~~~~~i~~~L~~~~~V~l~gfG~F~v~~~~~r~~rNP~Tge~i~ip~~~~v~F 79 (90)
T 1mul_A 1 MNKTQLIDVIAEKA-ELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTGRNPQTGKEIKIAAANVPAF 79 (90)
T ss_dssp CCHHHHHHHHHHHT-TCCHHHHHHHHHHHHHHHHHHHHTTCCEEETTTEEEEEEEECC--------------CCEEEEEE
T ss_pred CCHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHHHHHHHCCCCEEECCEEEEEEEEECCEEEECCCCCCEEEECCCCCEEE
T ss_conf 98899999999804-97999999999999999999997299818244899999984680117869997899638762899
Q ss_pred CCCHHHHHHHC
Q ss_conf 26989999707
Q gi|254780748|r 81 RAGKNLKERLN 91 (100)
Q Consensus 81 k~sk~lk~~iN 91 (100)
+||+.|++.|.
T Consensus 80 kpsk~Lk~~vk 90 (90)
T 1mul_A 80 VSGKALKDAVK 90 (90)
T ss_dssp EECHHHHHHHC
T ss_pred EECHHHHHHHC
T ss_conf 70999998639
No 9
>1exe_A Transcription factor 1; beta ribbon ARMS, DNA-binding, DNA-bending protein; NMR {Bacillus phage SPO1} SCOP: a.55.1.1 PDB: 1wtu_A
Probab=99.91 E-value=7.5e-26 Score=184.39 Aligned_cols=95 Identities=24% Similarity=0.350 Sum_probs=91.7
Q ss_pred CCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCCCEECCCCCCEEEECCCCEEEE
Q ss_conf 98899999999973899989999999999999999986498512034578886214654102588988899468734676
Q gi|254780748|r 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLARAPLAQKVISVEEKMVPFF 80 (100)
Q Consensus 1 MtK~eli~~ia~~~~~ls~~~~~~~vd~~~~~i~~~L~~~~~V~i~gfGtF~~~~~~~r~~rNP~Tge~i~i~~~~~v~F 80 (100)
|||+|||+.||+++ ++++++++.++|+|++.|.++|.+|++|+|+|||+|+++.+++|.||||+|||.+.||++++|+|
T Consensus 1 M~K~eli~~ia~~~-~lsk~~~~~~v~~~~~~i~~~L~~g~~V~l~gfGtF~~~~r~~r~grNP~Tge~i~ip~k~~v~F 79 (99)
T 1exe_A 1 MNKTELIKAIAQDT-GLTQVSVSKMLASFEKIITETVAKGDKVQLTGFLNIKPVARQARKGFNPQTQEALEIAPSVGVSV 79 (99)
T ss_dssp CCTTHHHHHHHHHH-CSCCTTHHHHHHHHHHHHHHHHHHTCCCCBTTTBCCCCCCCCCCCCCCSSSSSCCCCCCCCCCCC
T ss_pred CCHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHHHHHHHCCCCCEECCEEEEEEEEECCCCCCCCCCCCEEEECCCCCEEE
T ss_conf 97899999999863-98999999999999999999997399825224379999875581135839998898658642798
Q ss_pred CCCHHHHHHHCCCCCC
Q ss_conf 2698999970786100
Q gi|254780748|r 81 RAGKNLKERLNSPDST 96 (100)
Q Consensus 81 k~sk~lk~~iN~~~~~ 96 (100)
+||+.|++.||+....
T Consensus 80 k~sk~LK~~vn~~~~~ 95 (99)
T 1exe_A 80 KPGESLKKAAEGLKYE 95 (99)
T ss_dssp CCCHHHHHHHHHHTHH
T ss_pred ECCHHHHHHHCCCCHH
T ss_conf 3598999998299723
No 10
>1hue_A HU protein; DNA-binding; NMR {Geobacillus stearothermophilus} SCOP: a.55.1.1 PDB: 1huu_A
Probab=99.91 E-value=1.1e-24 Score=176.95 Aligned_cols=90 Identities=37% Similarity=0.655 Sum_probs=88.0
Q ss_pred CCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCCCEECCCCCCEEEECCCCEEEE
Q ss_conf 98899999999973899989999999999999999986498512034578886214654102588988899468734676
Q gi|254780748|r 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLARAPLAQKVISVEEKMVPFF 80 (100)
Q Consensus 1 MtK~eli~~ia~~~~~ls~~~~~~~vd~~~~~i~~~L~~~~~V~i~gfGtF~~~~~~~r~~rNP~Tge~i~i~~~~~v~F 80 (100)
|||+|||+.||+++ ++++++++.++|.|+++|.++|.+|++|+|+|||+|+++.+++|.||||+|||.+.|||+++|+|
T Consensus 1 MtK~eli~~la~~~-~l~~~~~~~~v~~~~~~i~~~L~~~~~v~i~~fG~F~~~~~~~r~~rNP~Tge~i~ip~k~~v~F 79 (90)
T 1hue_A 1 MNKTELINAVAETS-GLSKKDATKAVDAVFDSITEALRKGDKVQLIGFGNFEVRERAARKGRNPQTGEEMEIPASKVPAF 79 (90)
T ss_dssp CBSHHHHHHHHHHH-CCCHHHHHHHHHHHHHHHHHHHHHTCCCCBTTTBEECCCCCCCCEEECSSSSSEEECCCCCCCCE
T ss_pred CCHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHHHHHHHCCCCEEEECEEEEEEEEECCCCCCCCCCCCEEEECCCCEEEE
T ss_conf 97899999999875-98999999999999999999996499657642069999984782127859998899738731899
Q ss_pred CCCHHHHHHHC
Q ss_conf 26989999707
Q gi|254780748|r 81 RAGKNLKERLN 91 (100)
Q Consensus 81 k~sk~lk~~iN 91 (100)
+||+.|+++|.
T Consensus 80 kpsk~lk~~ik 90 (90)
T 1hue_A 80 KPGKALKDAVK 90 (90)
T ss_dssp ECTTHHHHHTC
T ss_pred EECHHHHHHHC
T ss_conf 64989998639
No 11
>1b8z_A Protein (histonelike protein HU); thermostable DNA binding protein; 1.60A {Thermotoga maritima} SCOP: a.55.1.1 PDB: 1riy_A
Probab=99.91 E-value=1e-24 Score=177.25 Aligned_cols=90 Identities=47% Similarity=0.707 Sum_probs=88.0
Q ss_pred CCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCCCEECCCCCCEEEECCCCEEEE
Q ss_conf 98899999999973899989999999999999999986498512034578886214654102588988899468734676
Q gi|254780748|r 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLARAPLAQKVISVEEKMVPFF 80 (100)
Q Consensus 1 MtK~eli~~ia~~~~~ls~~~~~~~vd~~~~~i~~~L~~~~~V~i~gfGtF~~~~~~~r~~rNP~Tge~i~i~~~~~v~F 80 (100)
|||+|||+.||+++ ++++++++.++|+|++.|.++|.+|++|+|+|||+|+++.+++|.||||+|||.++||++++|+|
T Consensus 1 MnK~eli~~ia~~~-~~s~~~~~~~v~~~~~~i~~~L~~~~~V~l~gfG~F~~~~~~~R~~rNP~Tge~~~ip~k~~v~F 79 (90)
T 1b8z_A 1 MNKKELIDRVAKKA-GAKKKDVKLILDTILETITEALAKGEKVQIVGFGSFEVRKAAARKGVNPQTRKPITIPERKVPKF 79 (90)
T ss_dssp CCHHHHHHHHHHHH-TCCHHHHHHHHHHHHHHHHHHHHTTCCEEETTTEEEEC-----------------------CCEE
T ss_pred CCHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHHHHHHHHCCCCEECCCEEEEEEEECCEEEECCCCCCEEEECCCCEEEE
T ss_conf 97899999999863-99999999999999999999997288776067169999875674405869998899648630899
Q ss_pred CCCHHHHHHHC
Q ss_conf 26989999707
Q gi|254780748|r 81 RAGKNLKERLN 91 (100)
Q Consensus 81 k~sk~lk~~iN 91 (100)
+||+.|+++|.
T Consensus 80 k~sk~lk~~ik 90 (90)
T 1b8z_A 80 KPGKALKEKVK 90 (90)
T ss_dssp EECHHHHHHHC
T ss_pred EECHHHHHHHC
T ss_conf 63999998639
No 12
>2iie_A Integration HOST factor; DNA kinking, bending, U-turn, intercalation, divalent, metal, recombination/DNA complex; HET: DNA; 2.41A {Escherichia coli} PDB: 2iif_A*
Probab=99.61 E-value=6.6e-16 Score=121.30 Aligned_cols=63 Identities=41% Similarity=0.713 Sum_probs=57.9
Q ss_pred HHHHHCCCCCCCEEEEEEEEECCCCCCEECCCCCCEEEECCCCEEEECCCHHHHHHHCCCCCC
Q ss_conf 999864985120345788862146541025889888994687346762698999970786100
Q gi|254780748|r 34 TQALANGGRVEIRGFGSFSVRKRAARLARAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDST 96 (100)
Q Consensus 34 ~~~L~~~~~V~i~gfGtF~~~~~~~r~~rNP~Tge~i~i~~~~~v~Fk~sk~lk~~iN~~~~~ 96 (100)
.+.-..+++|+|+|||+|+++.+++|.||||+|||.+.||++++|+|+||+.|+++||...+.
T Consensus 135 VN~~~qge~v~i~gFG~F~~~~r~aR~gRNPkTge~i~Ip~~~~~~Fk~sk~lk~~lN~~~~~ 197 (204)
T 2iie_A 135 VENAGGGERIEIRGFGSFSLHYRAPRTGRNPKTGDKVELEGKYVPHFKPGKELRDRANIYGGS 197 (204)
T ss_dssp HHHHCCCCCEEETTTEEEEEEEECCEEEECTTTCCEEEECCEEEEEEEECHHHHHHHCSSCCS
T ss_pred HHCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCEEEECCCCCEEECCCHHHHHHHCCCCCC
T ss_conf 858787876543552899998517856779599997886487755677888999997368998
No 13
>1jeo_A MJ1247, hypothetical protein MJ1247; RUMP pathway, phosphosugar, 3-hexulose-6-phosphate isomerase, PHI, structural genomics; HET: CME CIT; 2.00A {Methanocaldococcus jannaschii} SCOP: c.80.1.3
Probab=49.72 E-value=7.4 Score=19.46 Aligned_cols=50 Identities=14% Similarity=0.130 Sum_probs=36.0
Q ss_pred CCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEE
Q ss_conf 98899999999973899989999999999999999986498512034578
Q gi|254780748|r 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGS 50 (100)
Q Consensus 1 MtK~eli~~ia~~~~~ls~~~~~~~vd~~~~~i~~~L~~~~~V~i~gfGt 50 (100)
|++.|-++.+.+....+.+.........-++.+.+.|.+.++|.+-|.|.
T Consensus 1 ~s~~d~ld~i~~~i~~l~~~~~~~~~~~~i~~~~~~i~~a~~I~i~G~G~ 50 (180)
T 1jeo_A 1 MSKLEELDIVSNNILILKKFYTNDEWKNKLDSLIDRIIKAKKIFIFGVGR 50 (180)
T ss_dssp ---CHHHHHHHHHHHGGGHHHHCHHHHHHHHHHHHHHHHCSSEEEECCHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHCCCEEEEEECCH
T ss_conf 98335899999999999998734488999999999997899499997779
No 14
>2tpt_A Thymidine phosphorylase; transferase, salvage pathway; 2.60A {Escherichia coli K12} SCOP: a.46.2.1 c.27.1.1 d.41.3.1 PDB: 1azy_A 1tpt_A 1otp_A
Probab=40.44 E-value=21 Score=16.59 Aligned_cols=30 Identities=10% Similarity=0.223 Sum_probs=25.2
Q ss_pred CCHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
Q ss_conf 9889999999997389998999999999999
Q gi|254780748|r 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLE 31 (100)
Q Consensus 1 MtK~eli~~ia~~~~~ls~~~~~~~vd~~~~ 31 (100)
|+-+|+|+++.+. ..||..++..+++.+++
T Consensus 2 ~~~~eiI~k~~~g-~~Ls~eE~~~~~~~i~~ 31 (440)
T 2tpt_A 2 FLAQEIIRKKRDG-HALSDEEIRFFINGIRD 31 (440)
T ss_dssp CCHHHHHHHHHTT-CCCCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHCC-CCCCHHHHHHHHHHHHC
T ss_conf 8789999999779-99699999999999987
No 15
>1i27_A Transcription factor IIF; general transcription factor, RAP74, RAP30, TFIIF, RNA polymerase II, winged-helix domain; 1.02A {Homo sapiens} SCOP: a.4.5.30 PDB: 1j2x_A 2k7l_A*
Probab=39.59 E-value=14 Score=17.74 Aligned_cols=33 Identities=15% Similarity=0.339 Sum_probs=25.5
Q ss_pred CCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
Q ss_conf 988999999999738999899999999999999
Q gi|254780748|r 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEM 33 (100)
Q Consensus 1 MtK~eli~~ia~~~~~ls~~~~~~~vd~~~~~i 33 (100)
||-+||+..+-.+..+++..++-.++-.++.-|
T Consensus 24 mTt~eLL~Kfk~kkt~ls~eq~V~~la~ILkki 56 (73)
T 1i27_A 24 MTTKDLLKKFQTKKTGLSSEQTVNVLAQILKRL 56 (73)
T ss_dssp BCHHHHHHTSCHHHHCCCHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHC
T ss_conf 849999999864347887999999999999970
No 16
>1nha_A TFIIF-alpha, transcription initiation factor IIF, alpha subunit; transcription factor, human general transcription factor TFIIF, RAP74; NMR {Homo sapiens} SCOP: a.4.5.30 PDB: 1onv_A
Probab=36.39 E-value=22 Score=16.50 Aligned_cols=33 Identities=15% Similarity=0.339 Sum_probs=24.9
Q ss_pred CCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
Q ss_conf 988999999999738999899999999999999
Q gi|254780748|r 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEM 33 (100)
Q Consensus 1 MtK~eli~~ia~~~~~ls~~~~~~~vd~~~~~i 33 (100)
||-.||+.++-.+..+++..+...++-.++.-|
T Consensus 33 ~TT~eLl~Kfk~k~t~l~~~e~v~~~a~ILkki 65 (82)
T 1nha_A 33 MTTKDLLKKFQTKKTGLSSEQTVNVLAQILKRL 65 (82)
T ss_dssp BCHHHHHHHTTSSCCSSCHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHC
T ss_conf 739999999886246788499999999999970
No 17
>1z67_A Hypothetical protein S4005; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.45A {Shigella flexneri 2a str} SCOP: a.259.1.1
Probab=29.94 E-value=31 Score=15.52 Aligned_cols=40 Identities=15% Similarity=0.299 Sum_probs=35.2
Q ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 99999999973899989999999999999999986498512
Q gi|254780748|r 4 SSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVE 44 (100)
Q Consensus 4 ~eli~~ia~~~~~ls~~~~~~~vd~~~~~i~~~L~~~~~V~ 44 (100)
.|-|+.+|+++ ++++.++...+-.++=.+.+.+.-+++|.
T Consensus 75 ~~~l~~lA~~~-Gl~~~~~~~~La~~LP~~VD~lTP~G~lp 114 (135)
T 1z67_A 75 TNAVSDLGQKL-GVDTSTASSLLAEQLPKIIDALSPQGEVS 114 (135)
T ss_dssp HHHHHHHHHHH-TCCHHHHHHHHHHHHHHHHHHTCTTSCC-
T ss_pred HHHHHHHHHHH-CCCHHHHHHHHHHHHHHHHHCCCCCCCCC
T ss_conf 79999999998-90999999999999779997019899899
No 18
>1x92_A APC5045, phosphoheptose isomerase; midwest centre for structural genomics, SIS domain, A/B protein, lipopolysaccharide biosynthesis, PSI; HET: M7P; 2.30A {Pseudomonas aeruginosa} SCOP: c.80.1.3 PDB: 3bjz_A
Probab=29.36 E-value=26 Score=16.00 Aligned_cols=50 Identities=20% Similarity=0.172 Sum_probs=32.1
Q ss_pred CCHHHHHHHHHHHCCCCCHHH---HHHHHHHHHHHHHHHHHCCCCCCCEEEEE
Q ss_conf 988999999999738999899---99999999999999986498512034578
Q gi|254780748|r 1 MIKSSLIGTIAKKNPKLNYQD---VEKIVNMLLEEMTQALANGGRVEIRGFGS 50 (100)
Q Consensus 1 MtK~eli~~ia~~~~~ls~~~---~~~~vd~~~~~i~~~L~~~~~V~i~gfGt 50 (100)
|.-.+.|+.+.+++....... ....++...+.|.+++.+|++|-+-|=|.
T Consensus 3 M~~~~~i~~~f~~~i~~~~~~~~~l~~~I~~aa~~i~~~~~~~~kI~~~GnGg 55 (199)
T 1x92_A 3 MDMQHRIRQLFQASIETKQQALEVLPPYIEQASLVMVNALLNEGKILSCGNGG 55 (199)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHTTCCEEEECSTH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCH
T ss_conf 88899999999999999999998759999999999999998799899997866
No 19
>1o17_A Anthranilate PRT, anthranilate phosphoribosyltransferase, TRPD; nucleoside-phosphorylases; 2.05A {Sulfolobus solfataricus} SCOP: a.46.2.1 c.27.1.1 PDB: 1gxb_A 1zxy_A* 1zyk_A* 2gvq_A* 3gbr_A*
Probab=28.17 E-value=33 Score=15.33 Aligned_cols=30 Identities=13% Similarity=0.374 Sum_probs=25.0
Q ss_pred CCHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
Q ss_conf 9889999999997389998999999999999
Q gi|254780748|r 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLE 31 (100)
Q Consensus 1 MtK~eli~~ia~~~~~ls~~~~~~~vd~~~~ 31 (100)
|+=.++|+++.+. .+||+.++..+++.+++
T Consensus 1 M~~~~~i~k~~~g-~~Lt~eEa~~~~~~il~ 30 (345)
T 1o17_A 1 MNINEILKKLINK-SDLEINEAEELAKAIIR 30 (345)
T ss_dssp CCHHHHHHHHHTT-CCCCHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHCC-CCCCHHHHHHHHHHHHC
T ss_conf 9889999998669-99799999999999987
No 20
>1tk9_A Phosphoheptose isomerase 1; lipopolysaccharide biosynthesis, structural genomics, NYSGXRC, LPC1_camje, PSI, protein structure initiative; 2.10A {Campylobacter jejuni} SCOP: c.80.1.3
Probab=27.15 E-value=33 Score=15.32 Aligned_cols=50 Identities=20% Similarity=0.270 Sum_probs=31.4
Q ss_pred CCHHHHHHHHHHHCCCCCH--HHHHHHHHHHHHHHHHHHHCCCCCCCEEEEE
Q ss_conf 9889999999997389998--9999999999999999986498512034578
Q gi|254780748|r 1 MIKSSLIGTIAKKNPKLNY--QDVEKIVNMLLEEMTQALANGGRVEIRGFGS 50 (100)
Q Consensus 1 MtK~eli~~ia~~~~~ls~--~~~~~~vd~~~~~i~~~L~~~~~V~i~gfGt 50 (100)
|+=.++|+..-+++..+-. .....-++...+.|.+++.+|++|-+-|=|.
T Consensus 1 M~~~~~i~~~~~e~~~~~~~~~~~~~~I~~a~~~i~~~~~~~~kI~~~GnGg 52 (188)
T 1tk9_A 1 MSLINLVEKEWQEHQKIVQASEILKGQIAKVGELLCECLKKGGKILICGNGG 52 (188)
T ss_dssp CCHHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHTTCCEEEEESTH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCH
T ss_conf 9879999999999999999988628999999999999998799899996873
No 21
>1whu_A Polynucleotide phosphorylase; 3'-5' RNA exonuclease; pnpase, alpha-helical domain, structural genomics; NMR {Mus musculus} SCOP: a.4.9.1
Probab=24.28 E-value=39 Score=14.88 Aligned_cols=44 Identities=9% Similarity=0.143 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCE
Q ss_conf 89999999997389998999999999999999998649851203
Q gi|254780748|r 3 KSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIR 46 (100)
Q Consensus 3 K~eli~~ia~~~~~ls~~~~~~~vd~~~~~i~~~L~~~~~V~i~ 46 (100)
+.++++.+...+++....++..+++.+...+.-.+.-.+.+.+-
T Consensus 52 k~e~~e~l~e~~~e~~~~~i~~af~~v~K~~vR~~IL~~~~RiD 95 (104)
T 1whu_A 52 RLDTEEHLKEKFPEVDQFEIIESFNIVAKEVFRSIILNEYKRCD 95 (104)
T ss_dssp HHHHHHHHTTTCSSSCHHHHHHHHHHHHHHHHHHHHTTSSCSCC
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf 99999987442777689999999999999999999985898789
No 22
>2dsj_A Pyrimidine-nucleoside (thymidine) phosphorylase; pyrimidine-nucleoside phosphorylase, structural genomics, NPPSFA; 1.80A {Thermus thermophilus HB8}
Probab=23.88 E-value=40 Score=14.83 Aligned_cols=30 Identities=20% Similarity=0.164 Sum_probs=24.5
Q ss_pred CCHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
Q ss_conf 9889999999997389998999999999999
Q gi|254780748|r 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLE 31 (100)
Q Consensus 1 MtK~eli~~ia~~~~~ls~~~~~~~vd~~~~ 31 (100)
|+=.|+|+++.+. ..||+.++..+++.+++
T Consensus 1 m~~~~~I~k~~~g-~~Ls~eE~~~~~~~i~~ 30 (423)
T 2dsj_A 1 MNPVAFIREKREG-KKHRREDLEAFLLGYLR 30 (423)
T ss_dssp CCHHHHHHHHHTT-CCCCHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHCC-CCCCHHHHHHHHHHHHC
T ss_conf 9889999999779-99699999999999986
No 23
>3h5q_A PYNP, pyrimidine-nucleoside phosphorylase; structural genomics, glycosyltransferase, transferase; HET: MSE THM; 1.94A {Staphylococcus aureus}
Probab=22.38 E-value=43 Score=14.65 Aligned_cols=30 Identities=10% Similarity=0.143 Sum_probs=22.8
Q ss_pred CCHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
Q ss_conf 9889999999997389998999999999999
Q gi|254780748|r 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLE 31 (100)
Q Consensus 1 MtK~eli~~ia~~~~~ls~~~~~~~vd~~~~ 31 (100)
|+=.|||.+..+. ..||..++..+++.+++
T Consensus 4 M~~~e~I~k~~~g-~~Lt~eE~~~~~~~i~~ 33 (436)
T 3h5q_A 4 MRMIDIIEKKRDG-HTLTTEEINFFIGGYVK 33 (436)
T ss_dssp HHHHHHHHHHHTT-CCCCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHCC-CCCCHHHHHHHHHHHHC
T ss_conf 6899999998779-99799999999999987
No 24
>1brw_A PYNP, protein (pyrimidine nucleoside phosphorylase); domain movement, transferase; HET: MES; 2.10A {Geobacillus stearothermophilus} SCOP: a.46.2.1 c.27.1.1 d.41.3.1
Probab=21.32 E-value=45 Score=14.51 Aligned_cols=30 Identities=23% Similarity=0.203 Sum_probs=24.9
Q ss_pred CCHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
Q ss_conf 9889999999997389998999999999999
Q gi|254780748|r 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLE 31 (100)
Q Consensus 1 MtK~eli~~ia~~~~~ls~~~~~~~vd~~~~ 31 (100)
|+=.|+|.++.+. .+||..+++.+++.+++
T Consensus 1 M~~~diI~k~~~g-~~Ls~eE~~~~~~~i~~ 30 (433)
T 1brw_A 1 MRMVDLIAKKRDG-KALTKEEIEWIVRGYTN 30 (433)
T ss_dssp CCHHHHHHHHHTT-CCCCHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHCC-CCCCHHHHHHHHHHHHC
T ss_conf 9879999998679-99799999999999986
Done!