HHSEARCH alignment of GI: 254780748 and SCOP domain: d1b8za_

Alignment
>d1b8za_ a.55.1.1 (A:) HU protein {Thermotoga maritima [TaxId: 2336]}
Probab=99.91  E-value=6.4e-25  Score=177.00  Aligned_cols=90  Identities=47%  Similarity=0.707  Sum_probs=88.0

Q ss_pred             CCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCCCEECCCCCCEEEECCCCEEEE
Q ss_conf             98899999999973899989999999999999999986498512034578886214654102588988899468734676
Q gi|254780748|r    1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLARAPLAQKVISVEEKMVPFF   80 (100)
Q Consensus         1 MtK~eli~~ia~~~~~ls~~~~~~~vd~~~~~i~~~L~~~~~V~i~gfGtF~~~~~~~r~~rNP~Tge~i~i~~~~~v~F   80 (100)
                      |||+|||+.||+++ ++++++++.++|+|++.|.++|.+|++|+|+|||+|+++.+++|.||||+|||.++||++++|+|
T Consensus         1 MnK~eli~~ia~~~-~~s~~~~~~~~~~~~~~i~~~L~~~~~v~l~gfG~F~~~~~~~r~~rNP~Tge~i~ip~k~~v~F   79 (90)
T d1b8za_           1 MNKKELIDRVAKKA-GAKKKDVKLILDTILETITEALAKGEKVQIVGFGSFEVRKAAARKGVNPQTRKPITIPERKVPKF   79 (90)
T ss_dssp             CCHHHHHHHHHHHH-TCCHHHHHHHHHHHHHHHHHHHHTTCCEEETTTEEEEC-----------------------CCEE
T ss_pred             CCHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHHHHHHHHCCCCEECCEEEEEEECCCCEEEECCCCCCEEEECCCCEEEE
T ss_conf             97899999999864-98999999999999999999997288756267447887513655557899998898538630899


Q ss_pred             CCCHHHHHHHC
Q ss_conf             26989999707
Q gi|254780748|r   81 RAGKNLKERLN   91 (100)
Q Consensus        81 k~sk~lk~~iN   91 (100)
                      +||+.|+++|.
T Consensus        80 k~sk~lk~~vk   90 (90)
T d1b8za_          80 KPGKALKEKVK   90 (90)
T ss_dssp             EECHHHHHHHC
T ss_pred             EECHHHHHHHC
T ss_conf             65899998629


SCOP domain information

class: All alpha proteins
fold: IHF-like DNA-binding proteins
superfamily: IHF-like DNA-binding proteins
family: Prokaryotic DNA-bending protein
domain: HU protein
species: Thermotoga maritima [TaxId: 2336]