HHSEARCH alignment of GI: 254780748 and SCOP domain: d1huua_

Alignment
>d1huua_ a.55.1.1 (A:) HU protein {Bacillus stearothermophilus [TaxId: 1422]}
Probab=99.90  E-value=9.6e-25  Score=175.86  Aligned_cols=90  Identities=37%  Similarity=0.655  Sum_probs=88.0

Q ss_pred             CCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCCCEECCCCCCEEEECCCCEEEE
Q ss_conf             98899999999973899989999999999999999986498512034578886214654102588988899468734676
Q gi|254780748|r    1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLARAPLAQKVISVEEKMVPFF   80 (100)
Q Consensus         1 MtK~eli~~ia~~~~~ls~~~~~~~vd~~~~~i~~~L~~~~~V~i~gfGtF~~~~~~~r~~rNP~Tge~i~i~~~~~v~F   80 (100)
                      |||+|||+.||+++ ++++++++.++|.|+++|.++|.+|++|+|+|||+|+++.+++|.||||+|||.+.|||+++|+|
T Consensus         1 MtK~dli~~ia~~~-~~~~~~~~~~~~~~~~~i~~~L~~~~~v~i~~fG~F~~~~~~~r~~rNP~Tge~i~ip~k~~v~F   79 (90)
T d1huua_           1 MNKTELINAVAETS-GLSKKDATKAVDAVFDSITEALRKGDKVQLIGFGNFEVRERAARKGRNPQTGEEMEIPASKVPAF   79 (90)
T ss_dssp             CCHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHHHHHHHTTCCEEETTTEEEEEEEECCB----------TTBCCEEEEEE
T ss_pred             CCHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHHHHHHHCCCCEEEECEEEEEEEECCCEEEECCCCCCEEEECCCCEEEE
T ss_conf             97899999999864-98999999999999999999985399647604579999971662108889998899538731899


Q ss_pred             CCCHHHHHHHC
Q ss_conf             26989999707
Q gi|254780748|r   81 RAGKNLKERLN   91 (100)
Q Consensus        81 k~sk~lk~~iN   91 (100)
                      +||+.||++|.
T Consensus        80 k~sk~lK~~ik   90 (90)
T d1huua_          80 KPGKALKDAVK   90 (90)
T ss_dssp             EECHHHHHHHC
T ss_pred             EECHHHHHHHC
T ss_conf             62889998639


SCOP domain information

class: All alpha proteins
fold: IHF-like DNA-binding proteins
superfamily: IHF-like DNA-binding proteins
family: Prokaryotic DNA-bending protein
domain: HU protein
species: Bacillus stearothermophilus [TaxId: 1422]