HHSEARCH alignment of GI: 254780748 and SCOP domain: d1p71a_

Alignment
>d1p71a_ a.55.1.1 (A:) HU protein {Anabaena sp. [TaxId: 1167]}
Probab=99.93  E-value=1.9e-26  Score=186.66  Aligned_cols=94  Identities=31%  Similarity=0.592  Sum_probs=91.8

Q ss_pred             CCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCCCEECCCCCCEEEECCCCEEEE
Q ss_conf             98899999999973899989999999999999999986498512034578886214654102588988899468734676
Q gi|254780748|r    1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLARAPLAQKVISVEEKMVPFF   80 (100)
Q Consensus         1 MtK~eli~~ia~~~~~ls~~~~~~~vd~~~~~i~~~L~~~~~V~i~gfGtF~~~~~~~r~~rNP~Tge~i~i~~~~~v~F   80 (100)
                      |||+|||+.||+++ ++++++++.++|+|++.|.++|..|++|+|+|||+|+++.+++|.||||+|||.+.||++++|+|
T Consensus         1 M~K~eli~~ia~~~-~ls~~~~~~~v~~~~~~i~~~L~~~~~V~l~~fG~F~~~~~~~R~grNP~Tge~i~ip~k~~v~F   79 (94)
T d1p71a_           1 MNKGELVDAVAEKA-SVTKKQADAVLTAALETIIEAVSSGDKVTLVGFGSFESRERKAREGRNPKTNEKMEIPATRVPAF   79 (94)
T ss_dssp             CBHHHHHHHHHHHH-TCCHHHHHHHHHHHHHHHHHHHHTTCCEEETTTEEEEEEEECCEEEECTTTCCEEEECCEEEEEE
T ss_pred             CCHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHHHHHHHCCCEEEEECEEEEEEEECCCCEEECCCCCCEEEECCCCEEEE
T ss_conf             97899999999855-96999999999999999999984599799934378988823663048899998898628720899


Q ss_pred             CCCHHHHHHHCCCCC
Q ss_conf             269899997078610
Q gi|254780748|r   81 RAGKNLKERLNSPDS   95 (100)
Q Consensus        81 k~sk~lk~~iN~~~~   95 (100)
                      +||+.|++.||++.+
T Consensus        80 k~sk~Lk~~vN~~ka   94 (94)
T d1p71a_          80 SAGKLFREKVAPPKA   94 (94)
T ss_dssp             EECHHHHHHHSCCCC
T ss_pred             ECCHHHHHHHCCCCC
T ss_conf             559999997677899


SCOP domain information

class: All alpha proteins
fold: IHF-like DNA-binding proteins
superfamily: IHF-like DNA-binding proteins
family: Prokaryotic DNA-bending protein
domain: HU protein
species: Anabaena sp. [TaxId: 1167]