Query gi|254780748|ref|YP_003065161.1| integration host factor, beta subunit [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 100
No_of_seqs 101 out of 3065
Neff 6.7
Searched_HMMs 13730
Date Wed Jun 1 08:28:11 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780748.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1p71a_ a.55.1.1 (A:) HU prote 99.9 1.9E-26 1.4E-30 186.7 10.9 94 1-95 1-94 (94)
2 d1owfb_ a.55.1.1 (B:) Integrat 99.9 2.2E-26 1.6E-30 186.2 11.2 93 1-93 1-93 (94)
3 d1owfa_ a.55.1.1 (A:) Integrat 99.9 7.1E-26 5.1E-30 183.1 10.3 94 1-95 2-95 (96)
4 d2o97b1 a.55.1.1 (B:1-90) HU p 99.9 5.5E-26 4E-30 183.7 8.7 90 1-91 1-90 (90)
5 d1mula_ a.55.1.1 (A:) HU prote 99.9 5E-25 3.6E-29 177.7 9.0 90 1-91 1-90 (90)
6 d1exea_ a.55.1.1 (A:) Transcri 99.9 6.1E-26 4.5E-30 183.4 3.2 93 1-94 1-93 (99)
7 d1b8za_ a.55.1.1 (A:) HU prote 99.9 6.4E-25 4.6E-29 177.0 7.6 90 1-91 1-90 (90)
8 d1huua_ a.55.1.1 (A:) HU prote 99.9 9.6E-25 7E-29 175.9 7.5 90 1-91 1-90 (90)
9 d1brwa1 a.46.2.1 (A:1-70) Pyri 51.3 7.5 0.00055 17.9 3.6 30 1-31 1-30 (70)
10 d2tpta1 a.46.2.1 (A:1-70) Thym 49.4 8.9 0.00064 17.5 4.1 30 1-31 2-31 (70)
11 d1o17a1 a.46.2.1 (A:1-70) Anth 44.0 11 0.00078 16.9 3.6 30 1-31 1-30 (70)
12 d1i27a_ a.4.5.30 (A:) C-termin 39.8 7.9 0.00057 17.8 2.3 33 1-33 24-56 (73)
13 d1khda1 a.46.2.1 (A:12-80) Ant 34.0 12 0.00087 16.6 2.4 29 2-31 1-29 (69)
14 d1whua_ a.4.9.1 (A:) Polynucle 32.2 16 0.0012 15.8 5.0 45 3-47 52-96 (104)
15 d1z67a1 a.259.1.1 (A:3-131) Hy 31.0 17 0.0013 15.6 5.1 40 4-44 70-109 (129)
16 d1tk9a_ c.80.1.3 (A:) Phosphoh 28.4 18 0.0013 15.6 2.5 50 1-50 1-52 (188)
17 d1r2za1 a.156.1.2 (A:135-228) 27.5 20 0.0014 15.3 3.6 33 15-48 59-91 (94)
18 d1nria_ c.80.1.3 (A:) Hypothet 27.3 20 0.0014 15.2 3.9 51 1-52 19-72 (248)
No 1
>d1p71a_ a.55.1.1 (A:) HU protein {Anabaena sp. [TaxId: 1167]}
Probab=99.93 E-value=1.9e-26 Score=186.66 Aligned_cols=94 Identities=31% Similarity=0.592 Sum_probs=91.8
Q ss_pred CCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCCCEECCCCCCEEEECCCCEEEE
Q ss_conf 98899999999973899989999999999999999986498512034578886214654102588988899468734676
Q gi|254780748|r 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLARAPLAQKVISVEEKMVPFF 80 (100)
Q Consensus 1 MtK~eli~~ia~~~~~ls~~~~~~~vd~~~~~i~~~L~~~~~V~i~gfGtF~~~~~~~r~~rNP~Tge~i~i~~~~~v~F 80 (100)
|||+|||+.||+++ ++++++++.++|+|++.|.++|..|++|+|+|||+|+++.+++|.||||+|||.+.||++++|+|
T Consensus 1 M~K~eli~~ia~~~-~ls~~~~~~~v~~~~~~i~~~L~~~~~V~l~~fG~F~~~~~~~R~grNP~Tge~i~ip~k~~v~F 79 (94)
T d1p71a_ 1 MNKGELVDAVAEKA-SVTKKQADAVLTAALETIIEAVSSGDKVTLVGFGSFESRERKAREGRNPKTNEKMEIPATRVPAF 79 (94)
T ss_dssp CBHHHHHHHHHHHH-TCCHHHHHHHHHHHHHHHHHHHHTTCCEEETTTEEEEEEEECCEEEECTTTCCEEEECCEEEEEE
T ss_pred CCHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHHHHHHHCCCEEEEECEEEEEEEECCCCEEECCCCCCEEEECCCCEEEE
T ss_conf 97899999999855-96999999999999999999984599799934378988823663048899998898628720899
Q ss_pred CCCHHHHHHHCCCCC
Q ss_conf 269899997078610
Q gi|254780748|r 81 RAGKNLKERLNSPDS 95 (100)
Q Consensus 81 k~sk~lk~~iN~~~~ 95 (100)
+||+.|++.||++.+
T Consensus 80 k~sk~Lk~~vN~~ka 94 (94)
T d1p71a_ 80 SAGKLFREKVAPPKA 94 (94)
T ss_dssp EECHHHHHHHSCCCC
T ss_pred ECCHHHHHHHCCCCC
T ss_conf 559999997677899
No 2
>d1owfb_ a.55.1.1 (B:) Integration host factor beta subunit (IHFB) {Escherichia coli [TaxId: 562]}
Probab=99.93 E-value=2.2e-26 Score=186.22 Aligned_cols=93 Identities=42% Similarity=0.669 Sum_probs=90.8
Q ss_pred CCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCCCEECCCCCCEEEECCCCEEEE
Q ss_conf 98899999999973899989999999999999999986498512034578886214654102588988899468734676
Q gi|254780748|r 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLARAPLAQKVISVEEKMVPFF 80 (100)
Q Consensus 1 MtK~eli~~ia~~~~~ls~~~~~~~vd~~~~~i~~~L~~~~~V~i~gfGtF~~~~~~~r~~rNP~Tge~i~i~~~~~v~F 80 (100)
|||+|||+.||.+++++++++++.++|+|++.|.++|.+|++|+|+|||+|+++.+++|.||||+|||.+.||++++|+|
T Consensus 1 MtK~eli~~ia~~~~~ls~~~~~~~v~~~~~~i~~~L~~~~~V~l~gfG~F~~~~~~~R~grNP~Tge~i~ip~k~~v~F 80 (94)
T d1owfb_ 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIAIRGFGSFSLHYRAPRTGRNPKTGDKVELEGKYVPHF 80 (94)
T ss_dssp CBHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHHHHTTCCEEETTTEEEEEEEECCEEEECTTTCCEEEECCEEEEEE
T ss_pred CCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEECCEEEEEEEECCCCCCCCCCCCCEEEECCCCCEEE
T ss_conf 97899999999867999899999999999999999987699287336037887602664315889999898638630898
Q ss_pred CCCHHHHHHHCCC
Q ss_conf 2698999970786
Q gi|254780748|r 81 RAGKNLKERLNSP 93 (100)
Q Consensus 81 k~sk~lk~~iN~~ 93 (100)
+||+.|+++||..
T Consensus 81 k~sk~lk~~vN~~ 93 (94)
T d1owfb_ 81 KPGKELRDRANIY 93 (94)
T ss_dssp EECHHHHHHHCCC
T ss_pred ECCHHHHHHHCCC
T ss_conf 1699999987539
No 3
>d1owfa_ a.55.1.1 (A:) Integration host factor alpha subunit (IHFA) {Escherichia coli [TaxId: 562]}
Probab=99.93 E-value=7.1e-26 Score=183.05 Aligned_cols=94 Identities=30% Similarity=0.569 Sum_probs=91.8
Q ss_pred CCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCCCEECCCCCCEEEECCCCEEEE
Q ss_conf 98899999999973899989999999999999999986498512034578886214654102588988899468734676
Q gi|254780748|r 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLARAPLAQKVISVEEKMVPFF 80 (100)
Q Consensus 1 MtK~eli~~ia~~~~~ls~~~~~~~vd~~~~~i~~~L~~~~~V~i~gfGtF~~~~~~~r~~rNP~Tge~i~i~~~~~v~F 80 (100)
|||+|||+.||+++ ++++++++.++|+|++.|.++|.+|++|+|+|||+|+++.+++|.||||+|||.++||++++|+|
T Consensus 2 mTK~eli~~ia~~~-~lsk~~~~~~~~~~~~~i~~~L~~g~~V~l~gfGtF~~~~~~~r~~rNP~Tge~i~ip~~~~v~F 80 (96)
T d1owfa_ 2 LTKAEMSEYLFDKL-GLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPGRNPKTGEDIPITARRVVTF 80 (96)
T ss_dssp BCHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHHHHHHHTTCCEEETTTEEEEEEEECCEEEECSSSCCEEEECCEEEEEE
T ss_pred CCHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHHHHHHHCCCEEEECCEEEEEEEECCCCCEECCCCCCEEEECCCCEEEE
T ss_conf 78899999999985-98999999999999999999985699799667778999960660126889998898548613899
Q ss_pred CCCHHHHHHHCCCCC
Q ss_conf 269899997078610
Q gi|254780748|r 81 RAGKNLKERLNSPDS 95 (100)
Q Consensus 81 k~sk~lk~~iN~~~~ 95 (100)
+||+.|++.||+..+
T Consensus 81 k~sk~lk~~vn~~~~ 95 (96)
T d1owfa_ 81 RPGQKLKSRVENASP 95 (96)
T ss_dssp EECHHHHHHHHTCCC
T ss_pred EECHHHHHHHHCCCC
T ss_conf 729999999835499
No 4
>d2o97b1 a.55.1.1 (B:1-90) HU protein {Escherichia coli, beta-isoform [TaxId: 562]}
Probab=99.92 E-value=5.5e-26 Score=183.74 Aligned_cols=90 Identities=38% Similarity=0.627 Sum_probs=88.5
Q ss_pred CCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCCCEECCCCCCEEEECCCCEEEE
Q ss_conf 98899999999973899989999999999999999986498512034578886214654102588988899468734676
Q gi|254780748|r 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLARAPLAQKVISVEEKMVPFF 80 (100)
Q Consensus 1 MtK~eli~~ia~~~~~ls~~~~~~~vd~~~~~i~~~L~~~~~V~i~gfGtF~~~~~~~r~~rNP~Tge~i~i~~~~~v~F 80 (100)
|||+|||+.||+++ ++++++++.++|.|+++|.++|.+|++|+|+|||+|+++.+++|.||||+|||.+.||++++|+|
T Consensus 1 M~K~eLi~~ia~~~-~l~~~~~~~~v~~~~~~i~~~L~~~~~v~l~~fG~F~~~~~~~r~~rNP~Tge~i~ip~k~~v~F 79 (90)
T d2o97b1 1 MNKSQLIDKIAAGA-DISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTGRNPQTGKEITIAAAKVPSF 79 (90)
T ss_dssp CBHHHHHHHHHHTT-C-CHHHHHHHHHHHHHHHHHHHHTTCCEEETTTEEEEEECCC------------------CEEEE
T ss_pred CCHHHHHHHHHHCC-CCCHHHHHHHHHHHHHHHHHHHHCCCEEECCCEEEEEEEEECCCEEECCCCCCEEEECCCCEEEE
T ss_conf 97899999999720-98999999999999999999997398173242279999850464008899997899528722899
Q ss_pred CCCHHHHHHHC
Q ss_conf 26989999707
Q gi|254780748|r 81 RAGKNLKERLN 91 (100)
Q Consensus 81 k~sk~lk~~iN 91 (100)
+||+.|++.||
T Consensus 80 kpsk~lk~~lN 90 (90)
T d2o97b1 80 RAGKALKDAVN 90 (90)
T ss_dssp EECHHHHHHCC
T ss_pred ECCHHHHHHHC
T ss_conf 54999997539
No 5
>d1mula_ a.55.1.1 (A:) HU protein {Escherichia coli [TaxId: 562]}
Probab=99.91 E-value=5e-25 Score=177.67 Aligned_cols=90 Identities=36% Similarity=0.573 Sum_probs=87.9
Q ss_pred CCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCCCEECCCCCCEEEECCCCEEEE
Q ss_conf 98899999999973899989999999999999999986498512034578886214654102588988899468734676
Q gi|254780748|r 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLARAPLAQKVISVEEKMVPFF 80 (100)
Q Consensus 1 MtK~eli~~ia~~~~~ls~~~~~~~vd~~~~~i~~~L~~~~~V~i~gfGtF~~~~~~~r~~rNP~Tge~i~i~~~~~v~F 80 (100)
|||+|||+.||+++ ++++++++.++|+|++.|.++|..|++|+|+|||+|+++.+++|.||||+|||.++||++++|+|
T Consensus 1 M~K~eli~~ia~~~-~ltk~~~~~~v~~~~~~i~~~L~~~~~v~l~gfG~F~~~~~~~R~grNP~Tge~i~ip~k~~v~F 79 (90)
T d1mula_ 1 MNKTQLIDVIAEKA-ELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTGRNPQTGKEIKIAAANVPAF 79 (90)
T ss_dssp CCHHHHHHHHHHHT-TCCHHHHHHHHHHHHHHHHHHHHTTCCEEETTTEEEEEEEECC--------------CCEEEEEE
T ss_pred CCHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHHHHHHHHCCCCEECCCEEEEEEECCCEEEECCCCCCEEEECCCCCEEE
T ss_conf 97899999999704-96999999999999999999997299728657248999853761118889998899648641799
Q ss_pred CCCHHHHHHHC
Q ss_conf 26989999707
Q gi|254780748|r 81 RAGKNLKERLN 91 (100)
Q Consensus 81 k~sk~lk~~iN 91 (100)
+||+.|+++|.
T Consensus 80 kpsk~LK~~vk 90 (90)
T d1mula_ 80 VSGKALKDAVK 90 (90)
T ss_dssp EECHHHHHHHC
T ss_pred EECHHHHHHHC
T ss_conf 72899998629
No 6
>d1exea_ a.55.1.1 (A:) Transcription factor 1, TF1 {Bacteriophage SPO1 [TaxId: 10685]}
Probab=99.91 E-value=6.1e-26 Score=183.44 Aligned_cols=93 Identities=25% Similarity=0.365 Sum_probs=90.6
Q ss_pred CCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCCCEECCCCCCEEEECCCCEEEE
Q ss_conf 98899999999973899989999999999999999986498512034578886214654102588988899468734676
Q gi|254780748|r 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLARAPLAQKVISVEEKMVPFF 80 (100)
Q Consensus 1 MtK~eli~~ia~~~~~ls~~~~~~~vd~~~~~i~~~L~~~~~V~i~gfGtF~~~~~~~r~~rNP~Tge~i~i~~~~~v~F 80 (100)
|||+|||+.||+++ ++++++++.++|+|++.|.++|.+|++|+|+|||+|+++.+++|.||||+|||.+.||++++|+|
T Consensus 1 M~K~eli~~ia~~~-~ls~~~~~~~~~~~~~~i~~~L~~g~~V~l~gfG~F~~~~r~~r~grNP~Tge~i~ip~~~~v~F 79 (99)
T d1exea_ 1 MNKTELIKAIAQDT-GLTQVSVSKMLASFEKIITETVAKGDKVQLTGFLNIKPVARQARKGFNPQTQEALEIAPSVGVSV 79 (99)
T ss_dssp CCTTHHHHHHHHHH-CSCCTTHHHHHHHHHHHHHHHHHHTCCCCBTTTBCCCCCCCCCCCCCCSSSSSCCCCCCCCCCCC
T ss_pred CCHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEEEEEECCCCCCCCCCCCCEEEECCCCCEEE
T ss_conf 97899999999852-98999999999999999999984599378753468999704663317869999898648653788
Q ss_pred CCCHHHHHHHCCCC
Q ss_conf 26989999707861
Q gi|254780748|r 81 RAGKNLKERLNSPD 94 (100)
Q Consensus 81 k~sk~lk~~iN~~~ 94 (100)
+||+.||+.||+..
T Consensus 80 k~sk~LK~~vn~~~ 93 (99)
T d1exea_ 80 KPGESLKKAAEGLK 93 (99)
T ss_dssp CCCHHHHHHHHHHT
T ss_pred ECCHHHHHHHCCCC
T ss_conf 44989999882996
No 7
>d1b8za_ a.55.1.1 (A:) HU protein {Thermotoga maritima [TaxId: 2336]}
Probab=99.91 E-value=6.4e-25 Score=177.00 Aligned_cols=90 Identities=47% Similarity=0.707 Sum_probs=88.0
Q ss_pred CCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCCCEECCCCCCEEEECCCCEEEE
Q ss_conf 98899999999973899989999999999999999986498512034578886214654102588988899468734676
Q gi|254780748|r 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLARAPLAQKVISVEEKMVPFF 80 (100)
Q Consensus 1 MtK~eli~~ia~~~~~ls~~~~~~~vd~~~~~i~~~L~~~~~V~i~gfGtF~~~~~~~r~~rNP~Tge~i~i~~~~~v~F 80 (100)
|||+|||+.||+++ ++++++++.++|+|++.|.++|.+|++|+|+|||+|+++.+++|.||||+|||.++||++++|+|
T Consensus 1 MnK~eli~~ia~~~-~~s~~~~~~~~~~~~~~i~~~L~~~~~v~l~gfG~F~~~~~~~r~~rNP~Tge~i~ip~k~~v~F 79 (90)
T d1b8za_ 1 MNKKELIDRVAKKA-GAKKKDVKLILDTILETITEALAKGEKVQIVGFGSFEVRKAAARKGVNPQTRKPITIPERKVPKF 79 (90)
T ss_dssp CCHHHHHHHHHHHH-TCCHHHHHHHHHHHHHHHHHHHHTTCCEEETTTEEEEC-----------------------CCEE
T ss_pred CCHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHHHHHHHHCCCCEECCEEEEEEECCCCEEEECCCCCCEEEECCCCEEEE
T ss_conf 97899999999864-98999999999999999999997288756267447887513655557899998898538630899
Q ss_pred CCCHHHHHHHC
Q ss_conf 26989999707
Q gi|254780748|r 81 RAGKNLKERLN 91 (100)
Q Consensus 81 k~sk~lk~~iN 91 (100)
+||+.|+++|.
T Consensus 80 k~sk~lk~~vk 90 (90)
T d1b8za_ 80 KPGKALKEKVK 90 (90)
T ss_dssp EECHHHHHHHC
T ss_pred EECHHHHHHHC
T ss_conf 65899998629
No 8
>d1huua_ a.55.1.1 (A:) HU protein {Bacillus stearothermophilus [TaxId: 1422]}
Probab=99.90 E-value=9.6e-25 Score=175.86 Aligned_cols=90 Identities=37% Similarity=0.655 Sum_probs=88.0
Q ss_pred CCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCCCEECCCCCCEEEECCCCEEEE
Q ss_conf 98899999999973899989999999999999999986498512034578886214654102588988899468734676
Q gi|254780748|r 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLARAPLAQKVISVEEKMVPFF 80 (100)
Q Consensus 1 MtK~eli~~ia~~~~~ls~~~~~~~vd~~~~~i~~~L~~~~~V~i~gfGtF~~~~~~~r~~rNP~Tge~i~i~~~~~v~F 80 (100)
|||+|||+.||+++ ++++++++.++|.|+++|.++|.+|++|+|+|||+|+++.+++|.||||+|||.+.|||+++|+|
T Consensus 1 MtK~dli~~ia~~~-~~~~~~~~~~~~~~~~~i~~~L~~~~~v~i~~fG~F~~~~~~~r~~rNP~Tge~i~ip~k~~v~F 79 (90)
T d1huua_ 1 MNKTELINAVAETS-GLSKKDATKAVDAVFDSITEALRKGDKVQLIGFGNFEVRERAARKGRNPQTGEEMEIPASKVPAF 79 (90)
T ss_dssp CCHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHHHHHHHTTCCEEETTTEEEEEEEECCB----------TTBCCEEEEEE
T ss_pred CCHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHHHHHHHCCCCEEEECEEEEEEEECCCEEEECCCCCCEEEECCCCEEEE
T ss_conf 97899999999864-98999999999999999999985399647604579999971662108889998899538731899
Q ss_pred CCCHHHHHHHC
Q ss_conf 26989999707
Q gi|254780748|r 81 RAGKNLKERLN 91 (100)
Q Consensus 81 k~sk~lk~~iN 91 (100)
+||+.||++|.
T Consensus 80 k~sk~lK~~ik 90 (90)
T d1huua_ 80 KPGKALKDAVK 90 (90)
T ss_dssp EECHHHHHHHC
T ss_pred EECHHHHHHHC
T ss_conf 62889998639
No 9
>d1brwa1 a.46.2.1 (A:1-70) Pyrimidine nucleoside phosphorylase {Bacillus stearothermophilus [TaxId: 1422]}
Probab=51.27 E-value=7.5 Score=17.91 Aligned_cols=30 Identities=23% Similarity=0.203 Sum_probs=25.2
Q ss_pred CCHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
Q ss_conf 9889999999997389998999999999999
Q gi|254780748|r 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLE 31 (100)
Q Consensus 1 MtK~eli~~ia~~~~~ls~~~~~~~vd~~~~ 31 (100)
|+=.|+|+++... ..||..++..+++.+++
T Consensus 1 M~~~eii~k~~~g-~~Ls~~E~~~~~~~i~~ 30 (70)
T d1brwa1 1 MRMVDLIAKKRDG-KALTKEEIEWIVRGYTN 30 (70)
T ss_dssp CCHHHHHHHHHTT-CCCCHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHCC-CCCCHHHHHHHHHHHHC
T ss_conf 9899999998869-99799999999999985
No 10
>d2tpta1 a.46.2.1 (A:1-70) Thymidine phosphorylase {Escherichia coli [TaxId: 562]}
Probab=49.41 E-value=8.9 Score=17.46 Aligned_cols=30 Identities=10% Similarity=0.223 Sum_probs=24.5
Q ss_pred CCHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
Q ss_conf 9889999999997389998999999999999
Q gi|254780748|r 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLE 31 (100)
Q Consensus 1 MtK~eli~~ia~~~~~ls~~~~~~~vd~~~~ 31 (100)
|.-+|+|+++.+. ..|+..++..+++.+++
T Consensus 2 ~~~qeiI~k~~~g-~~Ls~~E~~~~~~~i~~ 31 (70)
T d2tpta1 2 FLAQEIIRKKRDG-HALSDEEIRFFINGIRD 31 (70)
T ss_dssp CCHHHHHHHHHTT-CCCCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHCC-CCCCHHHHHHHHHHHHC
T ss_conf 8799999998879-99699999999999984
No 11
>d1o17a1 a.46.2.1 (A:1-70) Anthranilate phosphoribosyltransferase (TrpD) {Archaeon Sulfolobus solfataricus [TaxId: 2287]}
Probab=44.03 E-value=11 Score=16.94 Aligned_cols=30 Identities=13% Similarity=0.374 Sum_probs=25.3
Q ss_pred CCHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
Q ss_conf 9889999999997389998999999999999
Q gi|254780748|r 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLE 31 (100)
Q Consensus 1 MtK~eli~~ia~~~~~ls~~~~~~~vd~~~~ 31 (100)
|+=.++++.+... .+||..++..+++.+++
T Consensus 1 M~~~~il~~l~~g-~~Ls~~e~~~~~~~i~~ 30 (70)
T d1o17a1 1 MNINEILKKLINK-SDLEINEAEELAKAIIR 30 (70)
T ss_dssp CCHHHHHHHHHTT-CCCCHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHCC-CCCCHHHHHHHHHHHHC
T ss_conf 9899999999859-99799999999999986
No 12
>d1i27a_ a.4.5.30 (A:) C-terminal domain of the rap74 subunit of TFIIF {Human (Homo sapiens) [TaxId: 9606]}
Probab=39.85 E-value=7.9 Score=17.78 Aligned_cols=33 Identities=15% Similarity=0.339 Sum_probs=25.7
Q ss_pred CCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
Q ss_conf 988999999999738999899999999999999
Q gi|254780748|r 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEM 33 (100)
Q Consensus 1 MtK~eli~~ia~~~~~ls~~~~~~~vd~~~~~i 33 (100)
||-+||+..+-.+..+++..++-.++-.++.-|
T Consensus 24 mTt~eLL~Kfk~kkt~ls~eq~V~~la~ILkki 56 (73)
T d1i27a_ 24 MTTKDLLKKFQTKKTGLSSEQTVNVLAQILKRL 56 (73)
T ss_dssp BCHHHHHHTSCHHHHCCCHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHC
T ss_conf 849999999753347887999999999999971
No 13
>d1khda1 a.46.2.1 (A:12-80) Anthranilate phosphoribosyltransferase (TrpD) {Pectobacterium carotovorum [TaxId: 554]}
Probab=34.02 E-value=12 Score=16.65 Aligned_cols=29 Identities=3% Similarity=0.266 Sum_probs=23.4
Q ss_pred CHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
Q ss_conf 889999999997389998999999999999
Q gi|254780748|r 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLE 31 (100)
Q Consensus 2 tK~eli~~ia~~~~~ls~~~~~~~vd~~~~ 31 (100)
|-+.||+++... .+|+..++..+++.+++
T Consensus 1 t~~~il~kl~~g-~~Ls~ee~~~~~~~i~~ 29 (69)
T d1khda1 1 THQPILEKLFKS-QSMTQEESHQLFAAIVR 29 (69)
T ss_dssp CCHHHHHHHHTT-CCCCHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHCC-CCCCHHHHHHHHHHHHC
T ss_conf 989999999859-99799999999999986
No 14
>d1whua_ a.4.9.1 (A:) Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=32.23 E-value=16 Score=15.76 Aligned_cols=45 Identities=11% Similarity=0.189 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCEE
Q ss_conf 899999999973899989999999999999999986498512034
Q gi|254780748|r 3 KSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRG 47 (100)
Q Consensus 3 K~eli~~ia~~~~~ls~~~~~~~vd~~~~~i~~~L~~~~~V~i~g 47 (100)
+.++++.+.+.++..+..++..+++.+...+...+.-.+.+.+-|
T Consensus 52 k~ei~~~l~e~~~~~~~~~i~~af~~v~k~ivR~~IL~~~~RiDG 96 (104)
T d1whua_ 52 RLDTEEHLKEKFPEVDQFEIIESFNIVAKEVFRSIILNEYKRCDG 96 (104)
T ss_dssp HHHHHHHHTTTCSSSCHHHHHHHHHHHHHHHHHHHHTTSSCSCCC
T ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf 999999975013424799999999999999999999858986899
No 15
>d1z67a1 a.259.1.1 (A:3-131) Hypothetical protein YidB {Shigella flexneri [TaxId: 623]}
Probab=30.96 E-value=17 Score=15.63 Aligned_cols=40 Identities=15% Similarity=0.299 Sum_probs=35.0
Q ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 99999999973899989999999999999999986498512
Q gi|254780748|r 4 SSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVE 44 (100)
Q Consensus 4 ~eli~~ia~~~~~ls~~~~~~~vd~~~~~i~~~L~~~~~V~ 44 (100)
.+-|..+|+++ ++++.++...+-.++=.+.+.+.-++++-
T Consensus 70 ~d~l~~lA~q~-Gl~~~~~~~~LA~~LP~~Vd~lTP~G~lP 109 (129)
T d1z67a1 70 TNAVSDLGQKL-GVDTSTASSLLAEQLPKIIDALSPQGEVS 109 (129)
T ss_dssp HHHHHHHHHHH-TCCHHHHHHHHHHHHHHHHHHTCTTSCC-
T ss_pred HHHHHHHHHHH-CCCHHHHHHHHHHHHHHHHHCCCCCCCCC
T ss_conf 79999999998-91999999999999679986439799899
No 16
>d1tk9a_ c.80.1.3 (A:) Phosphoheptose isomerase GmhA1 {Campylobacter jejuni [TaxId: 197]}
Probab=28.42 E-value=18 Score=15.55 Aligned_cols=50 Identities=20% Similarity=0.269 Sum_probs=33.1
Q ss_pred CCHHHHHHHHHHHCCCCC--HHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEE
Q ss_conf 988999999999738999--89999999999999999986498512034578
Q gi|254780748|r 1 MIKSSLIGTIAKKNPKLN--YQDVEKIVNMLLEEMTQALANGGRVEIRGFGS 50 (100)
Q Consensus 1 MtK~eli~~ia~~~~~ls--~~~~~~~vd~~~~~i~~~L~~~~~V~i~gfGt 50 (100)
|.-.++|+..-+++..+- -.....-++.+.+.|.+++.+|++|-+-|=|.
T Consensus 1 M~~~~~i~~~~~e~~~~l~~~~~~~~~I~~~~~~i~~~l~~ggkI~~~GnGg 52 (188)
T d1tk9a_ 1 MSLINLVEKEWQEHQKIVQASEILKGQIAKVGELLCECLKKGGKILICGNGG 52 (188)
T ss_dssp CCHHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHTTCCEEEEESTH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCC
T ss_conf 9869999999999999999988719999999999999998599899987887
No 17
>d1r2za1 a.156.1.2 (A:135-228) DNA repair protein MutM (Fpg) {Bacillus stearothermophilus [TaxId: 1422]}
Probab=27.50 E-value=20 Score=15.25 Aligned_cols=33 Identities=18% Similarity=0.531 Sum_probs=28.2
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCEEE
Q ss_conf 8999899999999999999999864985120345
Q gi|254780748|r 15 PKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGF 48 (100)
Q Consensus 15 ~~ls~~~~~~~vd~~~~~i~~~L~~~~~V~i~gf 48 (100)
..|+..+...+.+..-+++..++..|+ ..|++|
T Consensus 59 ~~Ls~~e~~~L~~~~~~vl~~ai~~gG-~t~~dy 91 (94)
T d1r2za1 59 ASLSSKEIERLHEEMVATIGEAVMKGG-STVRTY 91 (94)
T ss_dssp GGCCHHHHHHHHHHHHHHHHHHHHTTC-CCSSSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCC-CCHHHH
T ss_conf 786677999999999999999999599-888874
No 18
>d1nria_ c.80.1.3 (A:) Hypothetical protein HI0754 {Haemophilus influenzae [TaxId: 727]}
Probab=27.31 E-value=20 Score=15.23 Aligned_cols=51 Identities=18% Similarity=0.307 Sum_probs=31.6
Q ss_pred CCHHHHHHHHHHHCCCCCHHHHH---HHHHHHHHHHHHHHHCCCCCCCEEEEEEE
Q ss_conf 98899999999973899989999---99999999999998649851203457888
Q gi|254780748|r 1 MIKSSLIGTIAKKNPKLNYQDVE---KIVNMLLEEMTQALANGGRVEIRGFGSFS 52 (100)
Q Consensus 1 MtK~eli~~ia~~~~~ls~~~~~---~~vd~~~~~i~~~L~~~~~V~i~gfGtF~ 52 (100)
|.-.|+++.+.+.... -...++ .-+....+.+.+.|.+|++|.+-|-|+=-
T Consensus 19 ~s~~~il~~i~~ed~~-v~~av~~~l~~I~~av~~i~~~l~~gGrl~y~G~GtSg 72 (248)
T d1nria_ 19 QSTLEIVRLMNEEDKL-VPLAIESCLPQISLAVEQIVQAFQQGGRLIYIGAGTSG 72 (248)
T ss_dssp SCHHHHHHHHHHHHTH-HHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEESHHHH
T ss_pred CCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCC
T ss_conf 9999999999996799-99999997999999999999998639859998268530
Done!