BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,
Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005.
Query= gi|254780748|ref|YP_003065161.1| integration host factor, beta
subunit [Candidatus Liberibacter asiaticus str. psy62]
(100 letters)
Database: nr
14,124,377 sequences; 4,842,793,630 total letters
Searching..................................................done
>gi|319762546|ref|YP_004126483.1| integration host factor, beta subunit [Alicycliphilus
denitrificans BC]
gi|330824563|ref|YP_004387866.1| integration host factor subunit beta [Alicycliphilus
denitrificans K601]
gi|317117107|gb|ADU99595.1| integration host factor, beta subunit [Alicycliphilus
denitrificans BC]
gi|329309935|gb|AEB84350.1| integration host factor, beta subunit [Alicycliphilus
denitrificans K601]
Length = 100
Score = 122 bits (307), Expect = 2e-26, Method: Composition-based stats.
Identities = 36/98 (36%), Positives = 58/98 (59%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M +S L+ +A + +L +D E V +L+ ++ AL G R+EIRGFGSFSV R R+
Sbjct: 1 MTRSDLVEELAARFGQLTQRDAEYAVKTILDAVSDALVRGHRIEIRGFGSFSVSHRPPRM 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDSTLS 98
R P + + + + EK VP F+ GK L+E ++ + +
Sbjct: 61 GRNPRSGEAVHIPEKRVPHFKPGKALREAVDQRSAKTA 98
>gi|83591632|ref|YP_425384.1| integration host factor, subunit beta [Rhodospirillum rubrum ATCC
11170]
gi|123726093|sp|Q2RXP8|IHFB_RHORT RecName: Full=Integration host factor subunit beta;
Short=IHF-beta
gi|83574546|gb|ABC21097.1| Integration host factor, beta subunit [Rhodospirillum rubrum ATCC
11170]
Length = 100
Score = 121 bits (305), Expect = 3e-26, Method: Composition-based stats.
Identities = 46/99 (46%), Positives = 68/99 (68%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI IA++NP L +DVE+IV+ + +E+ ALA G RVE+RGFG+FSV++R AR+
Sbjct: 1 MTKSELIARIAERNPHLYQRDVERIVSTIFDEIADALARGDRVELRGFGAFSVKRRDARM 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDSTLSN 99
R P + + V+ K+ P+F+ GK L+E LN +S +
Sbjct: 61 GRNPRTGETVDVDAKVAPYFKTGKQLRELLNGGESESDD 99
>gi|53804258|ref|YP_113869.1| integration host factor subunit beta [Methylococcus capsulatus
str. Bath]
gi|81682135|sp|Q608S8|IHFB_METCA RecName: Full=Integration host factor subunit beta;
Short=IHF-beta
gi|53758019|gb|AAU92310.1| integration host factor, beta subunit [Methylococcus capsulatus
str. Bath]
Length = 95
Score = 121 bits (305), Expect = 3e-26, Method: Composition-based stats.
Identities = 39/95 (41%), Positives = 60/95 (63%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI ++A K P L+ +D+E + ++ M++ALA G R+EIRGFGSFS+ R R+
Sbjct: 1 MTKSELIESLAGKYPHLSPRDIEHAIKEMIGCMSEALAGGERIEIRGFGSFSLHHRPPRV 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDS 95
R P + + + + VP F+ GK L++R+NS
Sbjct: 61 GRNPKTGESVHLPSRRVPHFKPGKELRDRVNSIKD 95
>gi|289208392|ref|YP_003460458.1| integration host factor subunit beta [Thioalkalivibrio sp.
K90mix]
gi|288944023|gb|ADC71722.1| integration host factor, beta subunit [Thioalkalivibrio sp.
K90mix]
Length = 98
Score = 121 bits (304), Expect = 4e-26, Method: Composition-based stats.
Identities = 50/93 (53%), Positives = 65/93 (69%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI ++A+K+P L +DVE V LLE M+QALA+G RVEIRGFGSFS+ R RL
Sbjct: 1 MTKSELIESLAQKSPHLPARDVEMCVKALLERMSQALAHGQRVEIRGFGSFSLHFRPPRL 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSP 93
R P + +++ K VP F+ GK L+ER+NSP
Sbjct: 61 GRNPKTGEGVALPGKHVPHFKPGKELRERVNSP 93
>gi|296533549|ref|ZP_06896119.1| integration host factor beta subunit [Roseomonas cervicalis ATCC
49957]
gi|296266119|gb|EFH12174.1| integration host factor beta subunit [Roseomonas cervicalis ATCC
49957]
Length = 108
Score = 121 bits (304), Expect = 4e-26, Method: Composition-based stats.
Identities = 44/91 (48%), Positives = 58/91 (63%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI +A NP L DVE IV + E+T AL+ G RVE+RGFG+FS ++R AR
Sbjct: 1 MTKSELIAQLAAANPHLRQPDVELIVGTIFNEITAALSRGDRVELRGFGAFSAKQRDART 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + + V K VP+F+ GK L+ER+N
Sbjct: 61 GRNPRTGEAVEVAGKAVPYFKPGKELRERVN 91
>gi|114320093|ref|YP_741776.1| integration host factor subunit beta [Alkalilimnicola ehrlichii
MLHE-1]
gi|122312080|sp|Q0AA51|IHFB_ALHEH RecName: Full=Integration host factor subunit beta;
Short=IHF-beta
gi|114226487|gb|ABI56286.1| integration host factor, beta subunit [Alkalilimnicola ehrlichii
MLHE-1]
Length = 100
Score = 121 bits (303), Expect = 4e-26, Method: Composition-based stats.
Identities = 43/92 (46%), Positives = 61/92 (66%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI IA K L ++DVE V LLE+M++ LA+G R+EIRGFGSFS+ R R+
Sbjct: 1 MTKSELIEVIAGKQQHLAHKDVELAVKTLLEQMSETLASGERIEIRGFGSFSLHHRPPRI 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P + +++ K VP F+ GK L++R+N+
Sbjct: 61 GRNPKTGEPVALPGKYVPHFKPGKELRDRVNA 92
>gi|264677561|ref|YP_003277467.1| integration host factor subunit beta [Comamonas testosteroni
CNB-2]
gi|299532471|ref|ZP_07045862.1| integration host factor, beta subunit [Comamonas testosteroni
S44]
gi|262208073|gb|ACY32171.1| integration host factor, beta subunit [Comamonas testosteroni
CNB-2]
gi|298719556|gb|EFI60522.1| integration host factor, beta subunit [Comamonas testosteroni
S44]
Length = 106
Score = 121 bits (303), Expect = 4e-26, Method: Composition-based stats.
Identities = 36/98 (36%), Positives = 60/98 (61%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M +S L+ +A + +LN +D E+ V +L+ ++ AL G R+EIRGFGSF++ R R+
Sbjct: 1 MTRSDLVEELAAQFGQLNQRDAEQAVKTILDAVSDALVRGHRIEIRGFGSFAINHRQPRI 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDSTLS 98
R P + + + V K VP F+ GK L+E +++ + S
Sbjct: 61 GRNPRSGESVQVPSKRVPHFKPGKALREAVDNLKAEDS 98
>gi|254420350|ref|ZP_05034074.1| integration host factor, beta subunit [Brevundimonas sp. BAL3]
gi|196186527|gb|EDX81503.1| integration host factor, beta subunit [Brevundimonas sp. BAL3]
Length = 117
Score = 120 bits (302), Expect = 6e-26, Method: Composition-based stats.
Identities = 50/92 (54%), Positives = 68/92 (73%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
MIKS LI +A +N L + +VE++VN++L +MT AL+ GGRVE+RGFG+FSVR R ARL
Sbjct: 22 MIKSELIEKLAAENTHLTHAEVERLVNVILGKMTGALSEGGRVELRGFGAFSVRSRPARL 81
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P + + V K VPFF++GK L+ERLN+
Sbjct: 82 GRNPRTGETVEVPAKAVPFFKSGKELRERLNA 113
>gi|160900157|ref|YP_001565739.1| integration host factor subunit beta [Delftia acidovorans SPH-1]
gi|160365741|gb|ABX37354.1| integration host factor, beta subunit [Delftia acidovorans SPH-1]
Length = 113
Score = 120 bits (301), Expect = 8e-26, Method: Composition-based stats.
Identities = 35/91 (38%), Positives = 57/91 (62%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M +S L+ +A + +L+ +D E+ V +L+ ++ AL G R+EIRGFGSFSV R R+
Sbjct: 1 MTRSDLVEELAARFGQLSQRDAEQAVKTILDAVSDALVRGHRIEIRGFGSFSVNHRPPRM 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + + + + K VP F+ GK L+E ++
Sbjct: 61 GRNPRSGEAVHIPSKRVPHFKPGKALREAVD 91
>gi|221068236|ref|ZP_03544341.1| integration host factor, beta subunit [Comamonas testosteroni KF-1]
gi|220713259|gb|EED68627.1| integration host factor, beta subunit [Comamonas testosteroni KF-1]
Length = 107
Score = 119 bits (300), Expect = 1e-25, Method: Composition-based stats.
Identities = 36/100 (36%), Positives = 62/100 (62%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M +S L+ +A + +LN +D E+ V +L+ ++ AL G R+EIRGFGSF++ R R+
Sbjct: 1 MTRSDLVEELAAQFGQLNQRDAEQAVKTILDAVSDALVRGHRIEIRGFGSFAINHRQPRI 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDSTLSNS 100
R P + + + V K VP F+ GK L+E +++ + S++
Sbjct: 61 GRNPRSGESVQVPSKRVPHFKPGKALREAVDNLKADDSSA 100
>gi|144899229|emb|CAM76093.1| Histone-like bacterial DNA-binding protein [Magnetospirillum
gryphiswaldense MSR-1]
Length = 95
Score = 119 bits (299), Expect = 1e-25, Method: Composition-based stats.
Identities = 49/95 (51%), Positives = 68/95 (71%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI +A+KNP L +DVE+IV + +E+ +ALA G RVE+RGFG+FSV+ R AR
Sbjct: 1 MTKSELIARLAEKNPHLYQRDVERIVTTIFDEIAEALARGDRVELRGFGAFSVKSRDARQ 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDS 95
R P + ++V+ K+VPFF+ GK L+ERLN+ D
Sbjct: 61 GRNPRTGEQVAVDGKVVPFFKTGKQLRERLNAGDE 95
>gi|326316778|ref|YP_004234450.1| histone family protein DNA-binding protein [Acidovorax avenae
subsp. avenae ATCC 19860]
gi|323373614|gb|ADX45883.1| histone family protein DNA-binding protein [Acidovorax avenae
subsp. avenae ATCC 19860]
Length = 136
Score = 119 bits (299), Expect = 1e-25, Method: Composition-based stats.
Identities = 35/91 (38%), Positives = 56/91 (61%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M +S L+ +A + +L +D E V +L+ + AL G R+E+RGFGSFSV +R R+
Sbjct: 28 MTRSDLVEELAARFGQLTQRDAEAAVKTILDAVGDALVRGHRIEVRGFGSFSVNRRPPRM 87
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + + + + EK VP F+ GK L+E ++
Sbjct: 88 GRNPRSGEAVHIPEKRVPHFKPGKALREAVD 118
>gi|120611942|ref|YP_971620.1| histone family protein DNA-binding protein [Acidovorax citrulli
AAC00-1]
gi|120590406|gb|ABM33846.1| histone family protein DNA-binding protein [Acidovorax citrulli
AAC00-1]
Length = 109
Score = 119 bits (299), Expect = 1e-25, Method: Composition-based stats.
Identities = 35/91 (38%), Positives = 56/91 (61%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M +S L+ +A + +L +D E V +L+ + AL G R+E+RGFGSFSV +R R+
Sbjct: 1 MTRSDLVEELAARFGQLTQRDAEAAVKTILDAVGDALVRGHRIEVRGFGSFSVNRRPPRM 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + + + + EK VP F+ GK L+E ++
Sbjct: 61 GRNPRSGEAVHIPEKRVPHFKPGKALREAVD 91
>gi|94497991|ref|ZP_01304555.1| histone-like DNA-binding protein [Sphingomonas sp. SKA58]
gi|94422574|gb|EAT07611.1| histone-like DNA-binding protein [Sphingomonas sp. SKA58]
Length = 96
Score = 119 bits (298), Expect = 2e-25, Method: Composition-based stats.
Identities = 44/92 (47%), Positives = 63/92 (68%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
MI+S LI +A++NP L +VE+IV++ E+ LA+GGRVE+RGFG+F+ R R AR
Sbjct: 1 MIRSELIQKLAEENPGLTVPEVERIVDLFFREIVDRLASGGRVELRGFGAFTTRARDART 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P + + V K VP+F+ GK ++ERLNS
Sbjct: 61 GRNPRTGEQVPVCAKRVPYFKPGKEMRERLNS 92
>gi|121594811|ref|YP_986707.1| integration host factor subunit beta [Acidovorax sp. JS42]
gi|222110590|ref|YP_002552854.1| integration host factor subunit beta [Acidovorax ebreus TPSY]
gi|120606891|gb|ABM42631.1| integration host factor, beta subunit [Acidovorax sp. JS42]
gi|221730034|gb|ACM32854.1| integration host factor, beta subunit [Acidovorax ebreus TPSY]
Length = 103
Score = 119 bits (298), Expect = 2e-25, Method: Composition-based stats.
Identities = 37/97 (38%), Positives = 59/97 (60%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M +S L+ +A + +L +D E V +L+ ++ AL G R+EIRGFGSFSV +R R+
Sbjct: 1 MTRSDLVEELAARFGQLTQRDAEYAVKTILDAVSDALVRGHRIEIRGFGSFSVNRRPPRM 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDSTL 97
R P + + + + EK VP F+ GK L+E ++ + L
Sbjct: 61 GRNPRSGEAVHIPEKRVPHFKPGKALRETVDQRTAEL 97
>gi|114568651|ref|YP_755331.1| integration host factor subunit beta [Maricaulis maris MCS10]
gi|122317015|sp|Q0ATJ4|IHFB_MARMM RecName: Full=Integration host factor subunit beta;
Short=IHF-beta
gi|114339113|gb|ABI64393.1| integration host factor, beta subunit [Maricaulis maris MCS10]
Length = 101
Score = 118 bits (297), Expect = 2e-25, Method: Composition-based stats.
Identities = 49/99 (49%), Positives = 71/99 (71%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
MIKS LI +A+ NP L ++DVE++VN +L+ +T ALA G RVE+RGFG+FSVR R AR+
Sbjct: 1 MIKSELIDQLAEANPHLYHRDVERVVNTILDGITDALARGERVELRGFGAFSVRHRPARV 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDSTLSN 99
R P + ++V+EK VPFF+ GK L+ER+++ +
Sbjct: 61 GRNPRTGESVAVKEKHVPFFKTGKELRERVDASRESNPE 99
>gi|121997363|ref|YP_001002150.1| integration host factor subunit beta [Halorhodospira halophila
SL1]
gi|166918550|sp|A1WUI6|IHFB_HALHL RecName: Full=Integration host factor subunit beta;
Short=IHF-beta
gi|121588768|gb|ABM61348.1| integration host factor, beta subunit [Halorhodospira halophila
SL1]
Length = 102
Score = 118 bits (297), Expect = 2e-25, Method: Composition-based stats.
Identities = 47/92 (51%), Positives = 62/92 (67%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI IA K P L ++DVE V +LE M++ LANG R+EIRGFGSFS+ R AR+
Sbjct: 1 MTKSELIEAIASKQPHLAHKDVEDAVKKMLEHMSETLANGKRIEIRGFGSFSLHHRPARM 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P + +++ K VP F+ GK L+ER+NS
Sbjct: 61 GRNPKTGEPVALPAKYVPHFKPGKELRERVNS 92
>gi|239814620|ref|YP_002943530.1| integration host factor, subunit beta [Variovorax paradoxus S110]
gi|239801197|gb|ACS18264.1| integration host factor, beta subunit [Variovorax paradoxus S110]
Length = 104
Score = 118 bits (297), Expect = 2e-25, Method: Composition-based stats.
Identities = 38/98 (38%), Positives = 61/98 (62%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M +S L+ +A + +L ++D E V +L+ M+ AL G R+EIRGFGSFSV +R R+
Sbjct: 1 MTRSDLVEELAARFAQLTHRDAEYAVKTILDAMSDALVRGHRIEIRGFGSFSVTRRPPRI 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDSTLS 98
R P + + + + EK VP F+ GK L+E +++ + L
Sbjct: 61 GRNPRSGESVQIPEKRVPHFKPGKALREAVDAKTAELD 98
>gi|83647657|ref|YP_436092.1| integration host factor subunit beta [Hahella chejuensis KCTC
2396]
gi|123767360|sp|Q2SCF7|IHFB_HAHCH RecName: Full=Integration host factor subunit beta;
Short=IHF-beta
gi|83635700|gb|ABC31667.1| integration host factor, beta subunit [Hahella chejuensis KCTC
2396]
Length = 98
Score = 118 bits (297), Expect = 2e-25, Method: Composition-based stats.
Identities = 41/92 (44%), Positives = 62/92 (67%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS L+ IA+K P+L+ +DVE V ++E M+Q+L+ G R+EIRGFGSFS+ RA R+
Sbjct: 1 MTKSELVEIIAQKQPQLSIKDVELAVKTIIEYMSQSLSQGQRIEIRGFGSFSLHYRAPRV 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P + + + K VP F+ GK L++ +N+
Sbjct: 61 GRNPKTGETVHLPAKYVPHFKPGKELRDEVNA 92
>gi|296116409|ref|ZP_06835023.1| integration host factor subunit beta [Gluconacetobacter hansenii
ATCC 23769]
gi|295977002|gb|EFG83766.1| integration host factor subunit beta [Gluconacetobacter hansenii
ATCC 23769]
Length = 98
Score = 118 bits (297), Expect = 2e-25, Method: Composition-based stats.
Identities = 49/98 (50%), Positives = 69/98 (70%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI +A NP L +D+E+IV + E++ ALA G RVE+RGFG+F+V+KR +R
Sbjct: 1 MTKSELIAELAAANPHLPARDIEQIVQTIFHEISAALARGDRVELRGFGAFTVKKRDSRT 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDSTLS 98
R P ++++VEEK+VPFF+AGK L+ER+N D S
Sbjct: 61 GRNPRTGEIVAVEEKVVPFFKAGKELRERVNHQDGAES 98
>gi|292492662|ref|YP_003528101.1| integration host factor subunit beta [Nitrosococcus halophilus
Nc4]
gi|291581257|gb|ADE15714.1| integration host factor, beta subunit [Nitrosococcus halophilus
Nc4]
Length = 96
Score = 118 bits (296), Expect = 3e-25, Method: Composition-based stats.
Identities = 44/91 (48%), Positives = 58/91 (63%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI +A++ L+Y+DVE V LLE M+QALA G R+EIRGFGSFS+ R R
Sbjct: 1 MTKSELIERLAQRQALLSYRDVELAVKTLLEVMSQALAQGERIEIRGFGSFSLHYRPPRT 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + + K VP F+ GK L+ER++
Sbjct: 61 GRNPKTGDAVPLPSKYVPHFKPGKELRERVD 91
>gi|328545805|ref|YP_004305914.1| integration host factor subunit beta [polymorphum gilvum
SL003B-26A1]
gi|326415545|gb|ADZ72608.1| Integration host factor subunit beta [Polymorphum gilvum
SL003B-26A1]
Length = 101
Score = 118 bits (296), Expect = 3e-25, Method: Composition-based stats.
Identities = 50/91 (54%), Positives = 68/91 (74%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
MIKS L+ IA++NP L +DVE IVN +L+E+T+AL G RVE+RGFG+FSV+ R AR+
Sbjct: 1 MIKSELVQRIAEQNPHLYQRDVENIVNAILDEITEALMRGDRVELRGFGAFSVKNRPARV 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + + V+EK VPFF+ GK ++ERLN
Sbjct: 61 GRNPRTGQKVDVDEKYVPFFKTGKEMRERLN 91
>gi|163757832|ref|ZP_02164921.1| putative integration host factor beta subunit [Hoeflea
phototrophica DFL-43]
gi|162285334|gb|EDQ35616.1| putative integration host factor beta subunit [Hoeflea
phototrophica DFL-43]
Length = 96
Score = 117 bits (295), Expect = 3e-25, Method: Composition-based stats.
Identities = 51/95 (53%), Positives = 67/95 (70%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
MIKS L+ +A +NP L ++DVE IVN +L+E+T AL+ G RVE+RGFG+FSV+ R R
Sbjct: 1 MIKSELVQAVAARNPHLYHRDVENIVNAVLDEITDALSQGTRVELRGFGAFSVKNRPPRS 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDS 95
R P + + VEEK VPFF+ GK L+ERLN D
Sbjct: 61 GRNPRTGEPVFVEEKWVPFFKTGKELRERLNPDDK 95
>gi|91787670|ref|YP_548622.1| integration host factor subunit beta [Polaromonas sp. JS666]
gi|91696895|gb|ABE43724.1| integration host factor, beta subunit [Polaromonas sp. JS666]
Length = 104
Score = 117 bits (295), Expect = 4e-25, Method: Composition-based stats.
Identities = 37/97 (38%), Positives = 61/97 (62%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M +S L+ +A + +L ++D E V +L+ M+ AL G R+EIRGFGSFS+ +R R+
Sbjct: 1 MTRSDLVEELAARFSQLTHRDAEYAVKTILDAMSDALVRGHRIEIRGFGSFSINRRPPRM 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDSTL 97
R P + + +++ EK VP F+ GK L+E +++ L
Sbjct: 61 GRNPRSGESVAIPEKRVPHFKPGKALREAVDARTEEL 97
>gi|114777720|ref|ZP_01452680.1| DNA-binding protein HU [Mariprofundus ferrooxydans PV-1]
gi|114551936|gb|EAU54470.1| DNA-binding protein HU [Mariprofundus ferrooxydans PV-1]
Length = 94
Score = 117 bits (294), Expect = 4e-25, Method: Composition-based stats.
Identities = 36/92 (39%), Positives = 58/92 (63%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS L+ IA++ + ++ E +VN + + ALA G VE+RGFGSF+ + R AR+
Sbjct: 1 MTKSELVEIIAEQQAGITRREAEVVVNTIFSVIGDALAVGDHVELRGFGSFTTKARQARI 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P + +SV K +P F+ GK+L+ER+++
Sbjct: 61 GRNPKTGEAVSVPAKSIPHFKPGKDLRERVDN 92
>gi|121610067|ref|YP_997874.1| histone family protein DNA-binding protein [Verminephrobacter
eiseniae EF01-2]
gi|121554707|gb|ABM58856.1| histone family protein DNA-binding protein [Verminephrobacter
eiseniae EF01-2]
Length = 112
Score = 117 bits (294), Expect = 5e-25, Method: Composition-based stats.
Identities = 36/97 (37%), Positives = 56/97 (57%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M +S L+ +A + L D E V +L+ + QAL G R+EIRGFGSFSV R+
Sbjct: 6 MTRSDLVEELAARLTHLTRHDAESAVKAILDAVGQALVRGHRIEIRGFGSFSVSHHPPRM 65
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDSTL 97
R P + + +++ +K VP F+ GK L+E ++ S +
Sbjct: 66 GRNPRSGEAVAIPQKRVPHFKPGKALREAVDKRTSEM 102
>gi|315499364|ref|YP_004088168.1| integration host factor, beta subunit [Asticcacaulis excentricus
CB 48]
gi|315417376|gb|ADU14017.1| integration host factor, beta subunit [Asticcacaulis excentricus
CB 48]
Length = 98
Score = 117 bits (294), Expect = 5e-25, Method: Composition-based stats.
Identities = 49/91 (53%), Positives = 66/91 (72%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M+KS LI +A + P + +DVE+IVN++LE M + L GGRVE+RGFG+FSVR R AR+
Sbjct: 1 MLKSELIERLASEYPHMTQKDVERIVNLILESMIETLEKGGRVELRGFGAFSVRSRPARV 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + +SV K VPFF++GK L+ERLN
Sbjct: 61 GRNPRTGEAVSVPAKHVPFFKSGKELRERLN 91
>gi|121605691|ref|YP_983020.1| integration host factor subunit beta [Polaromonas
naphthalenivorans CJ2]
gi|120594660|gb|ABM38099.1| integration host factor, beta subunit [Polaromonas
naphthalenivorans CJ2]
Length = 104
Score = 117 bits (294), Expect = 5e-25, Method: Composition-based stats.
Identities = 37/97 (38%), Positives = 60/97 (61%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M +S L+ +A + +L ++D E V LL+ M+ L G R+EIRGFGSFS+ +R R+
Sbjct: 1 MTRSDLVEELAARFSQLTHRDAEHAVKTLLDAMSDTLVRGNRIEIRGFGSFSINRRPPRM 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDSTL 97
R P + + +++ EK VP F+ GK L+E +++ L
Sbjct: 61 GRNPRSGESVAIPEKRVPHFKPGKALREAVDARTGEL 97
>gi|332527560|ref|ZP_08403607.1| putative integration host factor subunit beta (ihf-beta) protein
[Rubrivivax benzoatilyticus JA2]
gi|332111963|gb|EGJ11940.1| putative integration host factor subunit beta (ihf-beta) protein
[Rubrivivax benzoatilyticus JA2]
Length = 103
Score = 117 bits (294), Expect = 5e-25, Method: Composition-based stats.
Identities = 38/100 (38%), Positives = 63/100 (63%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M +S L+ +A++ +L +D E V +L+ MT ALA G R+EIRGFGSFS+ +R R+
Sbjct: 1 MTRSDLVARLAERFSQLTQRDTEFAVKTILDAMTDALARGHRIEIRGFGSFSINRRPPRM 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDSTLSNS 100
R P + + + + EK+VP F+ GK L+E +++ ++
Sbjct: 61 GRNPRSGEQVVIPEKLVPHFKPGKALREAVDARQPADRDT 100
>gi|329890646|ref|ZP_08268989.1| integration host factor, beta subunit [Brevundimonas diminuta
ATCC 11568]
gi|328845947|gb|EGF95511.1| integration host factor, beta subunit [Brevundimonas diminuta
ATCC 11568]
Length = 96
Score = 117 bits (293), Expect = 6e-25, Method: Composition-based stats.
Identities = 48/92 (52%), Positives = 67/92 (72%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
MIKS LI +A +N L + +VE++VN++L MT+ L++GGRVE+RGFG+FSVR R AR
Sbjct: 1 MIKSELIEKLAAENLHLTHAEVERVVNVILGRMTETLSDGGRVELRGFGAFSVRSRPART 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P + + V K VPFF++GK L+ERLN+
Sbjct: 61 GRNPRTGETVEVPAKAVPFFKSGKELRERLNA 92
>gi|241764521|ref|ZP_04762541.1| histone family protein DNA-binding protein [Acidovorax delafieldii
2AN]
gi|241366057|gb|EER60661.1| histone family protein DNA-binding protein [Acidovorax delafieldii
2AN]
Length = 106
Score = 117 bits (293), Expect = 6e-25, Method: Composition-based stats.
Identities = 38/97 (39%), Positives = 60/97 (61%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M +S L+ +A + +L ++D E V LL+ + AL G R+EIRGFGSFSV +R R+
Sbjct: 6 MTRSDLVEELAARFSQLTHRDAEFAVKTLLDAVGDALVRGHRIEIRGFGSFSVNRRPPRM 65
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDSTL 97
R P + + +++ EK VP F+ GK L+E ++ + L
Sbjct: 66 GRNPRSGEAVAIPEKRVPHFKPGKALREAVDRRTAEL 102
>gi|209883627|ref|YP_002287484.1| integration host factor, beta subunit [Oligotropha
carboxidovorans OM5]
gi|226709797|sp|B6JCN9|IHFB_OLICO RecName: Full=Integration host factor subunit beta;
Short=IHF-beta
gi|209871823|gb|ACI91619.1| integration host factor, beta subunit [Oligotropha
carboxidovorans OM5]
Length = 106
Score = 116 bits (292), Expect = 7e-25, Method: Composition-based stats.
Identities = 51/91 (56%), Positives = 65/91 (71%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
MIKS L+ IA+ NP L +DVE IVN +LEE+ ALA G RVE+RGFG+FSV+ R AR
Sbjct: 1 MIKSELVQRIAEHNPHLYQRDVENIVNAILEEIVSALARGDRVELRGFGAFSVKHRPARA 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + + VE+K VPFF+ GK ++ERLN
Sbjct: 61 GRNPRTGEHVPVEQKSVPFFKTGKEMRERLN 91
>gi|90021780|ref|YP_527607.1| hypothetical protein Sde_2135 [Saccharophagus degradans 2-40]
gi|123396041|sp|Q21IT4|IHFB_SACD2 RecName: Full=Integration host factor subunit beta;
Short=IHF-beta
gi|89951380|gb|ABD81395.1| integration host factor, beta subunit [Saccharophagus degradans
2-40]
Length = 98
Score = 116 bits (292), Expect = 8e-25, Method: Composition-based stats.
Identities = 41/92 (44%), Positives = 62/92 (67%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI IA++ +L+ +D+E V ++LE M+QAL+ G R+EIRGFGSFS+ RA R
Sbjct: 1 MTKSELIERIAERQDQLSAKDIELAVKLVLEYMSQALSTGERIEIRGFGSFSLHFRAPRT 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P + +++ K VP F+ GK +++R+N
Sbjct: 61 GRNPKTGESVTLPGKYVPHFKPGKEMRDRVNE 92
>gi|329847169|ref|ZP_08262197.1| integration host factor, beta subunit [Asticcacaulis biprosthecum
C19]
gi|328842232|gb|EGF91801.1| integration host factor, beta subunit [Asticcacaulis biprosthecum
C19]
Length = 99
Score = 116 bits (292), Expect = 8e-25, Method: Composition-based stats.
Identities = 47/91 (51%), Positives = 62/91 (68%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M+KS LI +A + P L +DVE+ VN++LE M L GGRVE+RGFG+ SVR R AR
Sbjct: 1 MLKSELIERLASEYPHLTQKDVERAVNLILESMISTLEKGGRVELRGFGALSVRSRPARA 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + ++V K VPFF++GK L+ERLN
Sbjct: 61 GRNPRTGEAVNVPAKHVPFFKSGKELRERLN 91
>gi|89056076|ref|YP_511527.1| integration host factor subunit beta [Jannaschia sp. CCS1]
gi|123400948|sp|Q28LB0|IHFB_JANSC RecName: Full=Integration host factor subunit beta;
Short=IHF-beta
gi|88865625|gb|ABD56502.1| integration host factor beta subunit [Jannaschia sp. CCS1]
Length = 95
Score = 116 bits (292), Expect = 8e-25, Method: Composition-based stats.
Identities = 53/95 (55%), Positives = 71/95 (74%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
MI+S LI ++ +NP L +DVE+IVN + EE+ ALA G RVE+RGFG+FSV+KR AR+
Sbjct: 1 MIRSELIQKLSDENPHLYQRDVERIVNSIFEEVIDALAAGDRVELRGFGAFSVKKRDARI 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDS 95
R P + +SVEEK VPFF+AGK L++RLN +S
Sbjct: 61 GRNPRTGESVSVEEKHVPFFKAGKLLRDRLNGHES 95
>gi|89900357|ref|YP_522828.1| histone-like protein DNA-binding protein [Rhodoferax
ferrireducens T118]
gi|89345094|gb|ABD69297.1| histone-like DNA-binding protein [Rhodoferax ferrireducens T118]
Length = 103
Score = 116 bits (292), Expect = 9e-25, Method: Composition-based stats.
Identities = 34/99 (34%), Positives = 57/99 (57%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M +S LI +A + +L +D E V +L+ + AL G R+EIRGFGSF++ R R+
Sbjct: 1 MTRSDLIEELAARFGQLTRRDAEFAVKAILDAINDALVRGHRIEIRGFGSFAINHRPPRI 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDSTLSN 99
R P + +++ EK V F+ GK L+E ++ + ++
Sbjct: 61 GRNPRNGESVAIPEKRVLHFKPGKALREAVDQRTAEAAS 99
>gi|304310684|ref|YP_003810282.1| Integration host factor beta subunit [gamma proteobacterium HdN1]
gi|301796417|emb|CBL44625.1| Integration host factor beta subunit [gamma proteobacterium HdN1]
Length = 99
Score = 116 bits (291), Expect = 1e-24, Method: Composition-based stats.
Identities = 46/91 (50%), Positives = 61/91 (67%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI +A K P+L+ +DVE + LLE M+Q LA GGR+EIRGFGSFS+ R+AR
Sbjct: 1 MTKSELIEKVASKQPQLSQKDVELAIKTLLEGMSQTLATGGRIEIRGFGSFSLHYRSART 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + + + K VP F+ GK L+ER+N
Sbjct: 61 GRNPKTGESVDLTGKYVPHFKPGKELRERVN 91
>gi|154250603|ref|YP_001411427.1| integration host factor subunit beta [Parvibaculum
lavamentivorans DS-1]
gi|171769416|sp|A7HPD7|IHFB_PARL1 RecName: Full=Integration host factor subunit beta;
Short=IHF-beta
gi|154154553|gb|ABS61770.1| integration host factor, beta subunit [Parvibaculum
lavamentivorans DS-1]
Length = 110
Score = 116 bits (291), Expect = 1e-24, Method: Composition-based stats.
Identities = 49/94 (52%), Positives = 68/94 (72%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
MIKS L+ +A+ NP L +DVE+IV+ + +E++ ALA G RVE+RGFG+FSV+ R AR
Sbjct: 1 MIKSELVARLAQANPHLYQRDVERIVSTIFDEISAALARGDRVELRGFGAFSVKSRPART 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSPD 94
R P + + V+EK VPFF+ GK L+ERLN+ D
Sbjct: 61 GRNPRTGEPVHVDEKSVPFFKTGKELRERLNNAD 94
>gi|90420560|ref|ZP_01228467.1| integration host factor, beta subunit [Aurantimonas manganoxydans
SI85-9A1]
gi|90335288|gb|EAS49041.1| integration host factor, beta subunit [Aurantimonas manganoxydans
SI85-9A1]
Length = 93
Score = 116 bits (291), Expect = 1e-24, Method: Composition-based stats.
Identities = 50/93 (53%), Positives = 65/93 (69%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
MIKS L+ IA +NP L +DVE IVN + +E+T AL RVE+RGFG+FSV+ R R
Sbjct: 1 MIKSELVQAIATRNPHLYQRDVETIVNAIFDEITGALCESNRVELRGFGAFSVKHRPPRS 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSP 93
R P + ++VEEK VPFF+AGK L+ERLN+
Sbjct: 61 GRNPRTGEAVAVEEKWVPFFKAGKELRERLNAD 93
>gi|39933146|ref|NP_945422.1| integration host factor subunit beta [Rhodopseudomonas palustris
CGA009]
gi|192288502|ref|YP_001989107.1| integration host factor subunit beta [Rhodopseudomonas palustris
TIE-1]
gi|81698457|sp|Q6NDN9|IHFB_RHOPA RecName: Full=Integration host factor subunit beta; Short=IHF-beta
gi|226709804|sp|B3Q602|IHFB_RHOPT RecName: Full=Integration host factor subunit beta; Short=IHF-beta
gi|39652771|emb|CAE25510.1| integration host factor beta chain [Rhodopseudomonas palustris
CGA009]
gi|192282251|gb|ACE98631.1| integration host factor, beta subunit [Rhodopseudomonas palustris
TIE-1]
Length = 104
Score = 116 bits (291), Expect = 1e-24, Method: Composition-based stats.
Identities = 49/100 (49%), Positives = 66/100 (66%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
MIKS L+ IA+ NP L +DVE IVN +L+E+ ALA G RVE+RGFG+FSV+ R AR
Sbjct: 1 MIKSELVQRIAEHNPHLYQRDVENIVNAILDEIVDALARGDRVELRGFGAFSVKHRPARA 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDSTLSNS 100
R P + V++K VPFF+ GK ++ERLN + +
Sbjct: 61 GRNPRTGAHVPVDQKTVPFFKTGKEMRERLNRDSGDDAPT 100
>gi|171057653|ref|YP_001790002.1| integration host factor subunit beta [Leptothrix cholodnii SP-6]
gi|170775098|gb|ACB33237.1| integration host factor, beta subunit [Leptothrix cholodnii SP-6]
Length = 112
Score = 116 bits (291), Expect = 1e-24, Method: Composition-based stats.
Identities = 36/92 (39%), Positives = 61/92 (66%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M +S L+ +A++ +L ++D E V +L+ M+ ALA G R+EIRGFGSF++ +R R+
Sbjct: 1 MTRSDLVALLAERFSQLTHRDAEFAVKTMLDAMSDALARGHRIEIRGFGSFAINRRPPRV 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P + + + + EK+VP F+ GK L+E ++
Sbjct: 61 GRNPRSGEQVVIPEKLVPHFKPGKALREAVDQ 92
>gi|319792456|ref|YP_004154096.1| integration host factor, beta subunit [Variovorax paradoxus EPS]
gi|315594919|gb|ADU35985.1| integration host factor, beta subunit [Variovorax paradoxus EPS]
Length = 107
Score = 116 bits (291), Expect = 1e-24, Method: Composition-based stats.
Identities = 38/98 (38%), Positives = 61/98 (62%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M +S L+ +A + +L ++D E V +L+ M+ AL G R+EIRGFGSFSV +R R+
Sbjct: 1 MTRSDLVEELAARFAQLTHRDAEYAVKTILDAMSDALVRGHRIEIRGFGSFSVNRRPPRI 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDSTLS 98
R P + + + + EK VP F+ GK L+E +++ + L
Sbjct: 61 GRNPRSGESVQIPEKRVPHFKPGKALREAVDAKTAELD 98
>gi|77163719|ref|YP_342244.1| integration host factor, beta subunit [Nitrosococcus oceani ATCC
19707]
gi|76882033|gb|ABA56714.1| Integration host factor, beta subunit [Nitrosococcus oceani ATCC
19707]
Length = 113
Score = 116 bits (291), Expect = 1e-24, Method: Composition-based stats.
Identities = 46/95 (48%), Positives = 61/95 (64%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI +A++ L+Y+DVE V MLLE M+QALA G R+EIRGFGSFS+ R R
Sbjct: 18 MTKSELIERLAQRQALLSYRDVELAVKMLLEVMSQALAQGERIEIRGFGSFSLHYRPPRS 77
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDS 95
R P + + K VP F+ GK L+ER++ +S
Sbjct: 78 GRNPKTGDAVPLSSKYVPHFKPGKELRERVDRGES 112
>gi|332529386|ref|ZP_08405347.1| integration host factor subunit beta [Hylemonella gracilis ATCC
19624]
gi|332041184|gb|EGI77549.1| integration host factor subunit beta [Hylemonella gracilis ATCC
19624]
Length = 100
Score = 116 bits (290), Expect = 1e-24, Method: Composition-based stats.
Identities = 36/92 (39%), Positives = 58/92 (63%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M +S L+ +A + +L ++D E V +L+ M AL G R+EIRGFGSFS+ +R R+
Sbjct: 1 MTRSDLVEALAARFEQLTHRDAESAVKAILDAMNDALVRGRRIEIRGFGSFSINRRPPRM 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P + + +++ EK VP F+ GK L+E ++
Sbjct: 61 GRNPRSGESVAIPEKRVPHFKPGKALREAVDE 92
>gi|58038619|ref|YP_190583.1| integration host factor beta-subunit [Gluconobacter oxydans 621H]
gi|58001033|gb|AAW59927.1| Integration host factor beta-subunit [Gluconobacter oxydans 621H]
Length = 101
Score = 116 bits (290), Expect = 1e-24, Method: Composition-based stats.
Identities = 49/99 (49%), Positives = 65/99 (65%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M +S LI +A P L +D+E+IV+ + +E+ ALA G RVE+RGFG+F R+RAAR
Sbjct: 1 MTRSELIAELAAAYPHLLTRDIERIVHAVFDEIGAALARGDRVELRGFGAFLPRERAART 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDSTLSN 99
R P V+ VEEK VPFF+ GK L+ER+N ST N
Sbjct: 61 GRNPRTGDVVPVEEKSVPFFKVGKELRERVNQRLSTRKN 99
>gi|115522479|ref|YP_779390.1| integration host factor subunit beta [Rhodopseudomonas palustris
BisA53]
gi|122297854|sp|Q07UH4|IHFB_RHOP5 RecName: Full=Integration host factor subunit beta; Short=IHF-beta
gi|115516426|gb|ABJ04410.1| integration host factor, beta subunit [Rhodopseudomonas palustris
BisA53]
Length = 102
Score = 116 bits (290), Expect = 1e-24, Method: Composition-based stats.
Identities = 51/100 (51%), Positives = 68/100 (68%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
MIKS L+ IA+ NP L +DVE IVN +LEE+ ALA G RVE+RGFG+FSV+ R AR
Sbjct: 1 MIKSELVQRIAEHNPHLYQRDVENIVNAILEEIVAALARGDRVELRGFGAFSVKHRPARA 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDSTLSNS 100
R P + + VE+K VPFF+ GK ++ERLN + + +
Sbjct: 61 GRNPRTGEHVPVEQKSVPFFKTGKEMRERLNRDNGISAET 100
>gi|88810654|ref|ZP_01125911.1| integration host factor, beta subunit [Nitrococcus mobilis
Nb-231]
gi|88792284|gb|EAR23394.1| integration host factor, beta subunit [Nitrococcus mobilis
Nb-231]
Length = 107
Score = 116 bits (290), Expect = 1e-24, Method: Composition-based stats.
Identities = 42/96 (43%), Positives = 57/96 (59%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI IA L Y+DVE V L+E M++ L++G R+EIRGFGSFS+ R R+
Sbjct: 2 MTKSELIELIAANQQHLAYKDVELAVKTLIEHMSEVLSSGERIEIRGFGSFSLHHRPPRI 61
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDST 96
R P + + K VP F+ GK ++ER+NS
Sbjct: 62 GRNPKTGDPVVLPGKYVPHFKPGKQMRERVNSSRDK 97
>gi|288941368|ref|YP_003443608.1| integration host factor subunit beta [Allochromatium vinosum DSM
180]
gi|288896740|gb|ADC62576.1| integration host factor, beta subunit [Allochromatium vinosum DSM
180]
Length = 120
Score = 116 bits (290), Expect = 2e-24, Method: Composition-based stats.
Identities = 42/91 (46%), Positives = 58/91 (63%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI +A L Y+DVE+ V +LE M+ ALA G R+EIRGFGSFS+ R R+
Sbjct: 1 MTKSELIDILAADQDHLPYKDVEEAVRKILERMSTALATGERIEIRGFGSFSLHYRPPRI 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + +++ K VP F+ GK L++R+N
Sbjct: 61 GRNPKTGESVALAAKHVPHFKPGKELRDRVN 91
>gi|163739054|ref|ZP_02146467.1| integration host factor beta subunit [Phaeobacter gallaeciensis
BS107]
gi|163741705|ref|ZP_02149095.1| integration host factor subunit beta [Phaeobacter gallaeciensis
2.10]
gi|254476014|ref|ZP_05089400.1| integration host factor, beta subunit [Ruegeria sp. R11]
gi|161384878|gb|EDQ09257.1| integration host factor subunit beta [Phaeobacter gallaeciensis
2.10]
gi|161387859|gb|EDQ12215.1| integration host factor beta subunit [Phaeobacter gallaeciensis
BS107]
gi|214030257|gb|EEB71092.1| integration host factor, beta subunit [Ruegeria sp. R11]
Length = 94
Score = 116 bits (290), Expect = 2e-24, Method: Composition-based stats.
Identities = 51/93 (54%), Positives = 68/93 (73%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
MI+S LI IA +NP L +DVE+IVN + EE+T A+A G RVE+RGFG+FSV++R AR+
Sbjct: 1 MIRSELIQKIADENPHLYQRDVERIVNTVFEEVTDAMARGDRVELRGFGAFSVKQRDARV 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSP 93
R P + + VEEK VPFF+ GK L++RLN
Sbjct: 61 GRNPRTGETVHVEEKHVPFFKTGKLLRDRLNGK 93
>gi|316931463|ref|YP_004106445.1| integration host factor subunit beta [Rhodopseudomonas palustris
DX-1]
gi|315599177|gb|ADU41712.1| integration host factor, beta subunit [Rhodopseudomonas palustris
DX-1]
Length = 104
Score = 115 bits (289), Expect = 2e-24, Method: Composition-based stats.
Identities = 50/91 (54%), Positives = 64/91 (70%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
MIKS L+ IA+ NP L +DVE IVN +L+E+ ALA G RVE+RGFG+FSV+ R AR
Sbjct: 1 MIKSELVQRIAEHNPHLYQRDVENIVNAILDEIVDALARGDRVELRGFGAFSVKHRPARA 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + VE+K VPFF+ GK ++ERLN
Sbjct: 61 GRNPRTGAHVPVEQKTVPFFKTGKEMRERLN 91
>gi|255263556|ref|ZP_05342898.1| integration host factor, beta subunit [Thalassiobium sp. R2A62]
gi|255105891|gb|EET48565.1| integration host factor, beta subunit [Thalassiobium sp. R2A62]
Length = 93
Score = 115 bits (289), Expect = 2e-24, Method: Composition-based stats.
Identities = 51/93 (54%), Positives = 70/93 (75%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
MI+S L+ IA +NP L +DVEKIVN + +E+T+A+A+G RVE+RGFG+FSV++R AR
Sbjct: 1 MIRSELVQKIADENPHLYQRDVEKIVNTIFDEITEAMADGDRVELRGFGAFSVKRRDART 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSP 93
R P + + VEEK VPFF+AGK L++RLN
Sbjct: 61 GRNPRTGESVHVEEKHVPFFKAGKLLRDRLNGK 93
>gi|162148929|ref|YP_001603390.1| integration host factor subunit beta [Gluconacetobacter
diazotrophicus PAl 5]
gi|209545315|ref|YP_002277544.1| integration host factor subunit beta [Gluconacetobacter
diazotrophicus PAl 5]
gi|189045037|sp|A9H0B5|IHFB_GLUDA RecName: Full=Integration host factor subunit beta;
Short=IHF-beta
gi|161787506|emb|CAP57102.1| putative integration host factor beta-subunit [Gluconacetobacter
diazotrophicus PAl 5]
gi|209532992|gb|ACI52929.1| integration host factor, beta subunit [Gluconacetobacter
diazotrophicus PAl 5]
Length = 98
Score = 115 bits (289), Expect = 2e-24, Method: Composition-based stats.
Identities = 48/92 (52%), Positives = 67/92 (72%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI +A NP L +DVE IV + E++ ALA G RVE+RGFG+F+V+KR AR
Sbjct: 1 MTKSELIAELAAANPHLLSRDVELIVQTIFSEISAALARGDRVELRGFGAFTVKKRDART 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P ++++V+EK+VPFF+AGK L+ER+N+
Sbjct: 61 GRNPRTGEMVAVDEKVVPFFKAGKELRERVNN 92
>gi|254785523|ref|YP_003072952.1| integration host factor subunit beta [Teredinibacter turnerae
T7901]
gi|259492038|sp|C5BSK5|IHFB_TERTT RecName: Full=Integration host factor subunit beta;
Short=IHF-beta
gi|237687093|gb|ACR14357.1| integration host factor, beta subunit [Teredinibacter turnerae
T7901]
Length = 98
Score = 115 bits (289), Expect = 2e-24, Method: Composition-based stats.
Identities = 43/92 (46%), Positives = 62/92 (67%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI IA++ +L+ +D+E V ++LE M+Q LANG R+EIRGFGSFS+ RA R
Sbjct: 1 MTKSELIERIAERQDQLSAKDIELAVKLILEYMSQCLANGDRIEIRGFGSFSLHYRAPRT 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P + + +E K VP F+ GK +++R+N
Sbjct: 61 GRNPKTGESVELEGKFVPHFKPGKEMRDRVNE 92
>gi|126736963|ref|ZP_01752698.1| integration host factor subunit beta [Roseobacter sp. SK209-2-6]
gi|126721548|gb|EBA18251.1| integration host factor subunit beta [Roseobacter sp. SK209-2-6]
Length = 94
Score = 115 bits (289), Expect = 2e-24, Method: Composition-based stats.
Identities = 51/93 (54%), Positives = 67/93 (72%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
MI+S LI IA +NP L +DVE+IVN + EE+T A+A G RVE+RGFG+FSV++R AR
Sbjct: 1 MIRSELIQKIADENPHLYQRDVERIVNTVFEEVTDAMARGDRVELRGFGAFSVKQRDART 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSP 93
R P + + VEEK VPFF+ GK L++RLN
Sbjct: 61 GRNPRTGETVEVEEKHVPFFKTGKLLRDRLNGK 93
>gi|92114274|ref|YP_574202.1| integration host factor, beta subunit [Chromohalobacter
salexigens DSM 3043]
gi|123387402|sp|Q1QVK5|IHFB_CHRSD RecName: Full=Integration host factor subunit beta;
Short=IHF-beta
gi|91797364|gb|ABE59503.1| integration host factor, beta subunit [Chromohalobacter
salexigens DSM 3043]
Length = 98
Score = 115 bits (289), Expect = 2e-24, Method: Composition-based stats.
Identities = 43/92 (46%), Positives = 64/92 (69%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI IA + P+L+ ++VE V ++LE++TQ+L++GGRVEIRGFGSFS+ R R
Sbjct: 1 MTKSELIEQIAIRQPELSAKEVEAAVKIILEDITQSLSSGGRVEIRGFGSFSLHFREPRT 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P + ++ K VP F+ GK L+E++N+
Sbjct: 61 GRNPKTGDPVDLQGKYVPHFKPGKELREQVNA 92
>gi|148260716|ref|YP_001234843.1| integration host factor, beta subunit [Acidiphilium cryptum JF-5]
gi|326403912|ref|YP_004283994.1| integration host factor beta subunit [Acidiphilium multivorum
AIU301]
gi|146402397|gb|ABQ30924.1| integration host factor, beta subunit [Acidiphilium cryptum JF-5]
gi|325050774|dbj|BAJ81112.1| integration host factor beta subunit [Acidiphilium multivorum
AIU301]
Length = 113
Score = 115 bits (289), Expect = 2e-24, Method: Composition-based stats.
Identities = 47/92 (51%), Positives = 64/92 (69%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M +S LI +A +P L DVE+IV + +EMT LA GGRVE+RGFG+FSV++R AR
Sbjct: 1 MTRSELIAALAADHPHLTLADVERIVTAMFDEMTATLAAGGRVELRGFGAFSVKQRQARA 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P + + V+EK VPFFRAG+ L+E +N+
Sbjct: 61 GRNPRTGETVKVDEKTVPFFRAGRELREMVNA 92
>gi|307942847|ref|ZP_07658192.1| integration host factor, beta subunit [Roseibium sp. TrichSKD4]
gi|307773643|gb|EFO32859.1| integration host factor, beta subunit [Roseibium sp. TrichSKD4]
Length = 99
Score = 115 bits (289), Expect = 2e-24, Method: Composition-based stats.
Identities = 50/91 (54%), Positives = 67/91 (73%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
MIKS L+ IA++NP L +DVE IVN +L+E+T+AL G RVE+RGFG+FSV+ R AR+
Sbjct: 1 MIKSELVQHIAEQNPHLYQRDVENIVNAILDEITEALMRGDRVELRGFGAFSVKNRPARI 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + + VEEK VPFF+ GK ++ RLN
Sbjct: 61 GRNPRTGQKVEVEEKHVPFFKTGKEMRLRLN 91
>gi|84683356|ref|ZP_01011259.1| integration host factor, beta subunit [Maritimibacter
alkaliphilus HTCC2654]
gi|84668099|gb|EAQ14566.1| integration host factor, beta subunit [Rhodobacterales bacterium
HTCC2654]
Length = 93
Score = 115 bits (288), Expect = 2e-24, Method: Composition-based stats.
Identities = 50/93 (53%), Positives = 68/93 (73%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
MI+S LI IA +NP L +DVE+IVN + EE+ +A+A G RVE+RGFG+FSV++R AR+
Sbjct: 1 MIRSELIQKIADENPHLYQRDVERIVNTIFEEIIEAMARGDRVELRGFGAFSVKQRDARV 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSP 93
R P + + VEEK VPFF+ GK L++RLN
Sbjct: 61 GRNPRTGESVDVEEKHVPFFKTGKLLRDRLNGN 93
>gi|237653695|ref|YP_002890009.1| integration host factor subunit beta [Thauera sp. MZ1T]
gi|237624942|gb|ACR01632.1| integration host factor, beta subunit [Thauera sp. MZ1T]
Length = 95
Score = 115 bits (288), Expect = 2e-24, Method: Composition-based stats.
Identities = 43/91 (47%), Positives = 61/91 (67%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI +A++ P+L +D + V M+L+ MT ALA G R+EIRGFGSF++ R R
Sbjct: 1 MTKSELIAQLAERFPQLVAKDADYAVKMILDAMTDALARGDRIEIRGFGSFALNYRPPRT 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + + + V EK VP F+AGK L+ER++
Sbjct: 61 GRNPKSGEKVLVPEKYVPHFKAGKELRERVD 91
>gi|192362010|ref|YP_001982578.1| himD/ihfB [Cellvibrio japonicus Ueda107]
gi|190688175|gb|ACE85853.1| himD/ihfB [Cellvibrio japonicus Ueda107]
Length = 121
Score = 115 bits (288), Expect = 3e-24, Method: Composition-based stats.
Identities = 41/92 (44%), Positives = 59/92 (64%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI I +K +L +DVE V +LL+ M+ LA+G R+EIRGFGSFS+ RA R
Sbjct: 25 MTKSELIELITEKQNQLPIKDVEMAVKLLLDHMSDVLASGERIEIRGFGSFSLHYRAPRT 84
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P + + ++ K VP F+ GK +++R+N
Sbjct: 85 GRNPKTGESVVLDGKYVPHFKPGKEMRDRVNE 116
>gi|311694258|gb|ADP97131.1| integration host factor, beta subunit [marine bacterium HP15]
Length = 98
Score = 115 bits (288), Expect = 3e-24, Method: Composition-based stats.
Identities = 43/96 (44%), Positives = 61/96 (63%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS L+ IA K +L+ +DVE V ++E M+Q+LA+G R+EIRGFGSFS+ RAAR
Sbjct: 1 MTKSELVELIASKQTQLSVKDVELAVKTIIEHMSQSLADGQRIEIRGFGSFSLHHRAART 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDST 96
R P + + + K VP F+ GK L+E++N
Sbjct: 61 GRNPKTGEAVQLPAKYVPHFKPGKELREQVNDSLKK 96
>gi|301629532|ref|XP_002943892.1| PREDICTED: integration host factor subunit beta-like [Xenopus
(Silurana) tropicalis]
Length = 99
Score = 115 bits (288), Expect = 3e-24, Method: Composition-based stats.
Identities = 36/90 (40%), Positives = 56/90 (62%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M +S L+ +A + +L ++D E V +L+ + AL G R+EIRGFGSFS+ +R RL
Sbjct: 1 MTRSDLVEALATRFRQLTHRDAEHAVRAILDAVGDALVRGQRIEIRGFGSFSITRRPPRL 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P + + + + EK VP F+ GK L+E +
Sbjct: 61 GRNPRSGEAVQIPEKRVPHFKPGKALRESV 90
>gi|288957040|ref|YP_003447381.1| integration host factor subunit beta [Azospirillum sp. B510]
gi|288909348|dbj|BAI70837.1| integration host factor subunit beta [Azospirillum sp. B510]
Length = 93
Score = 115 bits (288), Expect = 3e-24, Method: Composition-based stats.
Identities = 48/93 (51%), Positives = 67/93 (72%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI +A++NP L +D+EKIV + +E+T+ALA G RVE+RGFG+FS++KR AR
Sbjct: 1 MTKSELIQRLAERNPHLYQRDIEKIVGTIFDEITEALARGDRVELRGFGAFSIKKRDART 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSP 93
R P + + V EK +PFF+ GK L+ERLN+
Sbjct: 61 GRNPRTGESVDVGEKCIPFFKTGKQLRERLNTD 93
>gi|86136033|ref|ZP_01054612.1| integration host factor beta subunit [Roseobacter sp. MED193]
gi|85826907|gb|EAQ47103.1| integration host factor beta subunit [Roseobacter sp. MED193]
Length = 94
Score = 115 bits (288), Expect = 3e-24, Method: Composition-based stats.
Identities = 49/93 (52%), Positives = 68/93 (73%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
MI+S LI IA +NP L +DVE+IVN + EE+T A++ G RVE+RGFG+FSV++R +R+
Sbjct: 1 MIRSELIQKIADENPHLYQRDVERIVNTVFEEVTDAMSRGDRVELRGFGAFSVKQRDSRV 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSP 93
R P + + VEEK VPFF+ GK L++RLN
Sbjct: 61 GRNPRTGETVQVEEKHVPFFKTGKLLRDRLNGK 93
>gi|114706456|ref|ZP_01439358.1| integration host factor beta subunit [Fulvimarina pelagi
HTCC2506]
gi|114538317|gb|EAU41439.1| integration host factor beta subunit [Fulvimarina pelagi
HTCC2506]
Length = 93
Score = 115 bits (288), Expect = 3e-24, Method: Composition-based stats.
Identities = 48/92 (52%), Positives = 62/92 (67%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
MIKS L+ IA +NP L +DVE IVN + +E+T+AL RVE+RGFG+FSV+ R R
Sbjct: 1 MIKSELVQVIANRNPHLYQRDVEMIVNAIFDEITEALCESNRVELRGFGAFSVKNRPPRT 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P + + V EK VPFF+ GK L+ERLN
Sbjct: 61 GRNPRTGEAVEVSEKWVPFFKPGKELRERLNE 92
>gi|152997229|ref|YP_001342064.1| integration host factor subunit beta [Marinomonas sp. MWYL1]
gi|189045039|sp|A6W0A0|IHFB_MARMS RecName: Full=Integration host factor subunit beta;
Short=IHF-beta
gi|150838153|gb|ABR72129.1| integration host factor, beta subunit [Marinomonas sp. MWYL1]
Length = 102
Score = 114 bits (287), Expect = 3e-24, Method: Composition-based stats.
Identities = 41/96 (42%), Positives = 61/96 (63%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI + + L +DVE+ + +LE M+ +LANG R+EIRGFGSFS+ RA R+
Sbjct: 1 MTKSELIELLIDQQSHLPVKDVEQAIKAMLEHMSDSLANGERIEIRGFGSFSLHYRAPRI 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDST 96
R P + + + K VP F+ GK L+E +N P+++
Sbjct: 61 GRNPKTGESVELSAKYVPHFKPGKELRELVNLPENS 96
>gi|302381902|ref|YP_003817725.1| integration host factor subunit beta [Brevundimonas subvibrioides
ATCC 15264]
gi|302192530|gb|ADL00102.1| integration host factor, beta subunit [Brevundimonas
subvibrioides ATCC 15264]
Length = 96
Score = 114 bits (287), Expect = 3e-24, Method: Composition-based stats.
Identities = 49/92 (53%), Positives = 67/92 (72%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
MIKS LI +A +N L + +VE++VN++L MT A+A+GGRVE+RGFG+FSVR R AR
Sbjct: 1 MIKSELIEKLAAENTHLTHAEVERVVNVVLGRMTDAMASGGRVELRGFGAFSVRSRPARA 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P + + V K VPFF++GK L+ERLN+
Sbjct: 61 GRNPRTGETVDVPAKAVPFFKSGKELRERLNA 92
>gi|220934716|ref|YP_002513615.1| integration host factor, beta subunit [Thioalkalivibrio sp.
HL-EbGR7]
gi|254803541|sp|B8GRS4|IHFB_THISH RecName: Full=Integration host factor subunit beta;
Short=IHF-beta
gi|219996026|gb|ACL72628.1| integration host factor, beta subunit [Thioalkalivibrio sp.
HL-EbGR7]
Length = 96
Score = 114 bits (287), Expect = 3e-24, Method: Composition-based stats.
Identities = 45/92 (48%), Positives = 61/92 (66%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI +A+K L Y+DVE V +LE ++QALA G R+EIRGFGSFS+ R R+
Sbjct: 1 MTKSELIEILARKQSHLAYKDVELSVKTMLEHLSQALATGDRIEIRGFGSFSLHFRPPRV 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P + +S+ K VP F+ GK L+ER+N+
Sbjct: 61 GRNPKTGETVSLPGKYVPHFKPGKELRERVNA 92
>gi|159043576|ref|YP_001532370.1| integration host factor subunit beta [Dinoroseobacter shibae DFL
12]
gi|189045035|sp|A8LSF5|IHFB_DINSH RecName: Full=Integration host factor subunit beta;
Short=IHF-beta
gi|157911336|gb|ABV92769.1| integration host factor, beta subunit [Dinoroseobacter shibae DFL
12]
Length = 95
Score = 114 bits (287), Expect = 3e-24, Method: Composition-based stats.
Identities = 48/95 (50%), Positives = 68/95 (71%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
MI+S LI +A +NP L +DVE+IVN + EE+ +A++NG RVE+RGFG+FSV+ R AR
Sbjct: 1 MIRSELIQIVADENPHLYQRDVERIVNTVFEEIIEAMSNGDRVELRGFGAFSVKHRDART 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDS 95
R P + ++VE K VPFF+ GK L++RLN +
Sbjct: 61 GRNPRTGEAVAVEAKSVPFFKTGKLLRDRLNGKED 95
>gi|83945692|ref|ZP_00958037.1| integration host factor beta subunit [Oceanicaulis alexandrii
HTCC2633]
gi|83850893|gb|EAP88753.1| integration host factor beta subunit [Oceanicaulis alexandrii
HTCC2633]
Length = 94
Score = 114 bits (287), Expect = 3e-24, Method: Composition-based stats.
Identities = 50/93 (53%), Positives = 68/93 (73%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
MIKS LI +A++NP L +D+E++VN +LEE+TQAL G RVE+RGFG+FSVR R R
Sbjct: 1 MIKSELIEKLAEENPHLYQKDLERVVNTVLEEITQALERGDRVELRGFGAFSVRNRPPRQ 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSP 93
R P + +SV+EK VPFF+ GK L+ER++
Sbjct: 61 GRNPRTGEPVSVKEKHVPFFKTGKELRERVDGK 93
>gi|307545457|ref|YP_003897936.1| integration host factor subunit beta [Halomonas elongata DSM
2581]
gi|307217481|emb|CBV42751.1| K05788 integration host factor subunit beta [Halomonas elongata
DSM 2581]
Length = 98
Score = 114 bits (287), Expect = 4e-24, Method: Composition-based stats.
Identities = 44/92 (47%), Positives = 62/92 (67%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI IA + P+L+ +DVE V M+L+++T LANGGRVEIRGFGSFS+ R R
Sbjct: 1 MTKSELIEQIAMRQPELSVKDVETAVRMILDDITGTLANGGRVEIRGFGSFSLHYREPRT 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P +++ K VP F+ GK L+E++++
Sbjct: 61 GRNPKTGDPVALSGKFVPHFKPGKELREQVDA 92
>gi|15598357|ref|NP_251851.1| integration host factor subunit beta [Pseudomonas aeruginosa
PAO1]
gi|107102691|ref|ZP_01366609.1| hypothetical protein PaerPA_01003757 [Pseudomonas aeruginosa
PACS2]
gi|116051150|ref|YP_790019.1| integration host factor subunit beta [Pseudomonas aeruginosa
UCBPP-PA14]
gi|152988540|ref|YP_001347349.1| integration host factor subunit beta [Pseudomonas aeruginosa PA7]
gi|218890647|ref|YP_002439511.1| integration host factor subunit beta [Pseudomonas aeruginosa
LESB58]
gi|254236124|ref|ZP_04929447.1| integration host factor beta subunit [Pseudomonas aeruginosa
C3719]
gi|254241850|ref|ZP_04935172.1| integration host factor beta subunit [Pseudomonas aeruginosa
2192]
gi|296388355|ref|ZP_06877830.1| integration host factor subunit beta [Pseudomonas aeruginosa
PAb1]
gi|313108473|ref|ZP_07794477.1| integration host factor beta subunit [Pseudomonas aeruginosa
39016]
gi|2495249|sp|Q51473|IHFB_PSEAE RecName: Full=Integration host factor subunit beta;
Short=IHF-beta
gi|122260285|sp|Q02PW7|IHFB_PSEAB RecName: Full=Integration host factor subunit beta;
Short=IHF-beta
gi|166926151|sp|A6V2R4|IHFB_PSEA7 RecName: Full=Integration host factor subunit beta;
Short=IHF-beta
gi|226709799|sp|B7VAL8|IHFB_PSEA8 RecName: Full=Integration host factor subunit beta;
Short=IHF-beta
gi|5565911|gb|AAD45260.1|AF147795_1 integration host factor beta-subunit [Pseudomonas aeruginosa]
gi|8118236|gb|AAF72950.1|AF236052_1 integration host factor beta-subunit [Pseudomonas aeruginosa]
gi|9949277|gb|AAG06549.1|AE004740_2 integration host factor beta subunit [Pseudomonas aeruginosa
PAO1]
gi|20559752|gb|AAM27536.1|AF498400_2 HimD [Pseudomonas aeruginosa]
gi|20559775|gb|AAM27554.1|AF498401_2 HimD [Pseudomonas aeruginosa]
gi|20559792|gb|AAM27569.1|AF498402_2 HimD [Pseudomonas aeruginosa]
gi|20559808|gb|AAM27583.1|AF498403_2 HimD [Pseudomonas aeruginosa]
gi|20559837|gb|AAM27609.1|AF498404_2 HimD [Pseudomonas aeruginosa]
gi|20559852|gb|AAM27623.1|AF498405_2 HimD [Pseudomonas aeruginosa]
gi|20559866|gb|AAM27636.1|AF498406_2 HimD [Pseudomonas aeruginosa]
gi|20559871|gb|AAM27640.1|AF498407_2 HimD [Pseudomonas aeruginosa]
gi|20559886|gb|AAM27654.1|AF498408_2 HimD [Pseudomonas aeruginosa]
gi|20559907|gb|AAM27674.1|AF498409_2 HimD [Pseudomonas aeruginosa]
gi|20559919|gb|AAM27685.1|AF498410_2 HimD [Pseudomonas aeruginosa]
gi|20559942|gb|AAM27705.1|AF498411_2 HimD [Pseudomonas aeruginosa]
gi|20559962|gb|AAM27720.1|AF498412_2 HimD [Pseudomonas aeruginosa]
gi|20559986|gb|AAM27740.1|AF498413_2 HimD [Pseudomonas aeruginosa]
gi|20560009|gb|AAM27760.1|AF498414_2 HimD [Pseudomonas aeruginosa]
gi|20560047|gb|AAM27793.1|AF498416_2 HimD [Pseudomonas aeruginosa]
gi|20560068|gb|AAM27813.1|AF498417_2 HimD [Pseudomonas aeruginosa]
gi|20560086|gb|AAM27828.1|AF498418_2 HimD [Pseudomonas aeruginosa]
gi|20560109|gb|AAM27848.1|AF498419_2 HimD [Pseudomonas aeruginosa]
gi|20560136|gb|AAM27868.1|AF498420_2 HimD [Pseudomonas aeruginosa]
gi|535713|gb|AAA65950.1| integration host factor beta subunit [Pseudomonas aeruginosa]
gi|6690128|gb|AAF23995.1| Ihf-Beta [Pseudomonas aeruginosa]
gi|27502127|gb|AAO17408.1| himD/ihfB [Pseudomonas aeruginosa]
gi|27502131|gb|AAO17411.1| himD/ihfB [Pseudomonas aeruginosa]
gi|115586371|gb|ABJ12386.1| integration host factor beta subunit [Pseudomonas aeruginosa
UCBPP-PA14]
gi|126168055|gb|EAZ53566.1| integration host factor beta subunit [Pseudomonas aeruginosa
C3719]
gi|126195228|gb|EAZ59291.1| integration host factor beta subunit [Pseudomonas aeruginosa
2192]
gi|150963698|gb|ABR85723.1| integration host factor, beta subunit [Pseudomonas aeruginosa
PA7]
gi|218770870|emb|CAW26635.1| integration host factor beta subunit [Pseudomonas aeruginosa
LESB58]
gi|310880979|gb|EFQ39573.1| integration host factor beta subunit [Pseudomonas aeruginosa
39016]
Length = 94
Score = 114 bits (287), Expect = 4e-24, Method: Composition-based stats.
Identities = 43/94 (45%), Positives = 62/94 (65%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI I +L+ +DVE + +LE+M+QALA G R+EIRGFGSFS+ RA R+
Sbjct: 1 MTKSELIERIVTHQGQLSAKDVELAIKTMLEQMSQALATGDRIEIRGFGSFSLHYRAPRV 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSPD 94
R P + + ++ K VP F+ GK L++R+N P+
Sbjct: 61 GRNPKTGESVRLDGKFVPHFKPGKELRDRVNEPE 94
>gi|198283154|ref|YP_002219475.1| integration host factor subunit beta [Acidithiobacillus
ferrooxidans ATCC 53993]
gi|218667528|ref|YP_002425383.1| integration host factor, beta subunit [Acidithiobacillus
ferrooxidans ATCC 23270]
gi|198247675|gb|ACH83268.1| integration host factor, beta subunit [Acidithiobacillus
ferrooxidans ATCC 53993]
gi|218519741|gb|ACK80327.1| integration host factor, beta subunit [Acidithiobacillus
ferrooxidans ATCC 23270]
Length = 101
Score = 114 bits (286), Expect = 4e-24, Method: Composition-based stats.
Identities = 40/95 (42%), Positives = 61/95 (64%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI I+ + P L+ +D+E +L+ ++ ALA G R+EIRGFGSFS+ R A+
Sbjct: 1 MTKSELIKNISAQYPHLSVRDIEMATRQMLDYLSDALAEGERIEIRGFGSFSMHVRPAKQ 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDS 95
R P + + V EK VP F+ GK L+E+++ P++
Sbjct: 61 GRNPKTGEPVLVPEKRVPHFKPGKELREQVDYPEA 95
>gi|254435518|ref|ZP_05049025.1| integration host factor, beta subunit [Nitrosococcus oceani
AFC27]
gi|207088629|gb|EDZ65901.1| integration host factor, beta subunit [Nitrosococcus oceani
AFC27]
Length = 96
Score = 114 bits (286), Expect = 4e-24, Method: Composition-based stats.
Identities = 46/95 (48%), Positives = 61/95 (64%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI +A++ L+Y+DVE V MLLE M+QALA G R+EIRGFGSFS+ R R
Sbjct: 1 MTKSELIERLAQRQALLSYRDVELAVKMLLEVMSQALAQGERIEIRGFGSFSLHYRPPRS 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDS 95
R P + + K VP F+ GK L+ER++ +S
Sbjct: 61 GRNPKTGDAVPLSSKYVPHFKPGKELRERVDRGES 95
>gi|113866825|ref|YP_725314.1| integration host factor subunit beta [Ralstonia eutropha H16]
gi|113525601|emb|CAJ91946.1| integration host factor beta subunit [Ralstonia eutropha H16]
Length = 140
Score = 114 bits (286), Expect = 4e-24, Method: Composition-based stats.
Identities = 41/91 (45%), Positives = 62/91 (68%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS L+ +A + P+L +D + V +L+ M++ALA+G R+EIRGFGSF + KR R+
Sbjct: 1 MTKSELVEKLAARFPQLLLRDADISVKTILDAMSEALADGHRIEIRGFGSFGLNKRPPRV 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + + + V EK VP F+AGK L+ER++
Sbjct: 61 GRNPKSGERVLVPEKRVPHFKAGKELRERVD 91
>gi|94309668|ref|YP_582878.1| integration host factor subunit beta [Cupriavidus metallidurans
CH34]
gi|123383988|sp|Q1LQG7|IHFB_RALME RecName: Full=Integration host factor subunit beta;
Short=IHF-beta
gi|93353520|gb|ABF07609.1| integration host factor beta subunit [Cupriavidus metallidurans
CH34]
Length = 135
Score = 114 bits (286), Expect = 4e-24, Method: Composition-based stats.
Identities = 41/91 (45%), Positives = 62/91 (68%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS L+ +A + P+L +D + V +L+ M++ALA+G R+EIRGFGSF + KR R+
Sbjct: 1 MTKSELVEKLAARFPQLLLRDADISVKTILDAMSEALADGHRIEIRGFGSFGLNKRPPRV 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + + + V EK VP F+AGK L+ER++
Sbjct: 61 GRNPKSGERVLVPEKRVPHFKAGKELRERVD 91
>gi|256822124|ref|YP_003146087.1| integration host factor subunit beta [Kangiella koreensis DSM
16069]
gi|256795663|gb|ACV26319.1| integration host factor, beta subunit [Kangiella koreensis DSM
16069]
Length = 100
Score = 114 bits (286), Expect = 4e-24, Method: Composition-based stats.
Identities = 41/96 (42%), Positives = 65/96 (67%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI + KNP+L+ +DVE +V ++++M+++L++G R+EIRGFGSFS+ RA R+
Sbjct: 1 MTKSQLIERLVDKNPQLSVRDVELVVKSMIDQMSESLSDGDRIEIRGFGSFSLHYRAPRV 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDST 96
R P + + ++ K VP F+ GK L+ER+N
Sbjct: 61 GRNPKTGESVKLDGKYVPHFKPGKELRERVNDGQDK 96
>gi|86747764|ref|YP_484260.1| integration host factor subunit beta [Rhodopseudomonas palustris
HaA2]
gi|123004672|sp|Q2J2G1|IHFB_RHOP2 RecName: Full=Integration host factor subunit beta;
Short=IHF-beta
gi|86570792|gb|ABD05349.1| integration host factor, beta subunit [Rhodopseudomonas palustris
HaA2]
Length = 101
Score = 114 bits (286), Expect = 4e-24, Method: Composition-based stats.
Identities = 49/95 (51%), Positives = 64/95 (67%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
MIKS L+ IA+ NP L +DVE IVN +L+E+ ALA G RVE+RGFG+FSV+ R AR
Sbjct: 1 MIKSELVQRIAEHNPHLYQRDVENIVNAILDEIVDALARGDRVELRGFGAFSVKHRPARA 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDS 95
R P + V++K VPFF+ GK ++ERLN
Sbjct: 61 GRNPRTGAHVPVDQKSVPFFKTGKEMRERLNRETG 95
>gi|104780674|ref|YP_607172.1| integration host factor subunit beta [Pseudomonas entomophila
L48]
gi|123380995|sp|Q1ID97|IHFB_PSEE4 RecName: Full=Integration host factor subunit beta;
Short=IHF-beta
gi|95109661|emb|CAK14362.1| integration host factor (IHF),beta subunit, site specific
recombination [Pseudomonas entomophila L48]
Length = 98
Score = 114 bits (286), Expect = 4e-24, Method: Composition-based stats.
Identities = 43/94 (45%), Positives = 60/94 (63%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI I L+ +DVE + +LE+M+Q LA G R+EIRGFGSFS+ RA R+
Sbjct: 1 MTKSELIDRIVTHQGLLSSKDVELAIKTMLEQMSQCLATGDRIEIRGFGSFSLHYRAPRV 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSPD 94
R P + +S+E K VP F+ GK L++R+N +
Sbjct: 61 GRNPKTGQSVSLEGKYVPHFKPGKELRDRVNEEE 94
>gi|254428433|ref|ZP_05042140.1| integration host factor, beta subunit [Alcanivorax sp. DG881]
gi|196194602|gb|EDX89561.1| integration host factor, beta subunit [Alcanivorax sp. DG881]
Length = 116
Score = 114 bits (286), Expect = 4e-24, Method: Composition-based stats.
Identities = 43/91 (47%), Positives = 58/91 (63%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
KS LI IA + +L+ +DVE V L+E+M +LA GGR+EIRGFGSFS+ RA R+
Sbjct: 4 TKSELIERIADRQAQLSPKDVELAVKTLIEQMADSLAGGGRIEIRGFGSFSLHFRAPRVG 63
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P + + K VP F+ GK L+ER+N
Sbjct: 64 RNPKTGASVELHGKYVPHFKPGKELRERVNE 94
>gi|88810610|ref|ZP_01125867.1| DNA-binding protein HU-beta, NS1 [Nitrococcus mobilis Nb-231]
gi|88792240|gb|EAR23350.1| DNA-binding protein HU-beta, NS1 [Nitrococcus mobilis Nb-231]
Length = 90
Score = 114 bits (286), Expect = 4e-24, Method: Composition-based stats.
Identities = 34/91 (37%), Positives = 53/91 (58%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI +A ++ L+ + V+ + +T AL G +V + GFG+F+VR+RAAR
Sbjct: 1 MNKSELIEVVA-QSADLSKAAASRAVDAFVTSVTDALKEGDQVTLVGFGTFAVRERAART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + I++ P F+AGK LK+ +N
Sbjct: 60 GRNPRTGESITIPASKTPGFKAGKALKDAVN 90
>gi|294012141|ref|YP_003545601.1| integration host factor beta subunit [Sphingobium japonicum
UT26S]
gi|292675471|dbj|BAI96989.1| integration host factor beta subunit [Sphingobium japonicum
UT26S]
Length = 96
Score = 114 bits (286), Expect = 4e-24, Method: Composition-based stats.
Identities = 44/93 (47%), Positives = 67/93 (72%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
MI+S LI +A++NP LN Q+VE+IV++ +E+ L++GGRVE+RGFG+F+ R R AR
Sbjct: 1 MIRSELIQKLAEENPNLNLQEVERIVDLFFKEIVDRLSSGGRVELRGFGAFTTRAREART 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSP 93
R P + + V+ K VP+F+ GK ++ERLN+
Sbjct: 61 GRNPRTGEQVPVDAKRVPYFKPGKEMRERLNAK 93
>gi|254501804|ref|ZP_05113955.1| integration host factor, beta subunit [Labrenzia alexandrii
DFL-11]
gi|222437875|gb|EEE44554.1| integration host factor, beta subunit [Labrenzia alexandrii
DFL-11]
Length = 99
Score = 114 bits (286), Expect = 4e-24, Method: Composition-based stats.
Identities = 49/91 (53%), Positives = 67/91 (73%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
MIKS L+ IA++NP L +DVE IVN +L+E+T+AL G RVE+RGFG+FSV+ R AR+
Sbjct: 1 MIKSELVQHIAEQNPHLYQRDVENIVNAILDEITEALMRGDRVELRGFGAFSVKNRPARI 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + + V+EK VPFF+ GK ++ RLN
Sbjct: 61 GRNPRTGQKVEVDEKHVPFFKTGKEMRIRLN 91
>gi|110834605|ref|YP_693464.1| integration host factor subunit beta [Alcanivorax borkumensis SK2]
gi|110647716|emb|CAL17192.1| integration host factor beta-subunit [Alcanivorax borkumensis SK2]
Length = 117
Score = 114 bits (286), Expect = 4e-24, Method: Composition-based stats.
Identities = 45/97 (46%), Positives = 60/97 (61%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
KS LI IA + +L+ +DVE V L+E+M +LA GGR+EIRGFGSFS+ RA R+
Sbjct: 4 TKSELIERIADRQAQLSPKDVELAVKTLIEQMADSLAGGGRIEIRGFGSFSLHFRAPRVG 63
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDSTLS 98
R P + + K VP F+ GK L+ER+N S S
Sbjct: 64 RNPKTGASVELHGKYVPHFKPGKELRERVNESLSADS 100
>gi|31789462|gb|AAP58576.1| putative DNA-binding protein [uncultured Acidobacteria bacterium]
Length = 116
Score = 114 bits (286), Expect = 4e-24, Method: Composition-based stats.
Identities = 36/92 (39%), Positives = 58/92 (63%), Gaps = 1/92 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ L+ +A+ +L +D E++V ++ E + + L G ++E+RGFGSF VR+R AR
Sbjct: 1 MTKAELVEDVAEA-AELTKKDAERLVEIVFESIIETLNQGEKIELRGFGSFRVRERGARR 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P +S+ K VP+F+ GK LKE +N+
Sbjct: 60 GRNPKTGDPVSIPAKRVPYFKPGKELKELINN 91
>gi|87122168|ref|ZP_01078051.1| integration host factor beta-subunit [Marinomonas sp. MED121]
gi|86162488|gb|EAQ63770.1| integration host factor beta-subunit [Marinomonas sp. MED121]
Length = 101
Score = 114 bits (286), Expect = 5e-24, Method: Composition-based stats.
Identities = 42/99 (42%), Positives = 59/99 (59%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI + + L QDVE+ + +LE M++ LA+G R+EIRGFGSFS+ RA R+
Sbjct: 1 MTKSELIELLIDQQSHLPVQDVEQAIKAMLEHMSEVLADGERIEIRGFGSFSLHYRAPRV 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDSTLSN 99
R P + + + K VP F+ GK L+E +NSP
Sbjct: 61 GRNPKTGESVDLVAKYVPHFKPGKELRELVNSPSVETDE 99
>gi|85705352|ref|ZP_01036451.1| integration host factor, beta subunit [Roseovarius sp. 217]
gi|85670225|gb|EAQ25087.1| integration host factor, beta subunit [Roseovarius sp. 217]
Length = 93
Score = 114 bits (286), Expect = 5e-24, Method: Composition-based stats.
Identities = 51/93 (54%), Positives = 65/93 (69%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
MI+S LI IA +NP L +DVE+IVN + +T ALA G RVE+RGFG+FSV+KR AR
Sbjct: 1 MIRSELIQKIADENPHLYQRDVERIVNTIFNAITDALAEGNRVELRGFGAFSVKKRDART 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSP 93
R P + + VEEK VPFF+ GK L++RLN
Sbjct: 61 GRNPRTGESVHVEEKYVPFFKTGKLLRDRLNGK 93
>gi|91974676|ref|YP_567335.1| integration host factor subunit beta [Rhodopseudomonas palustris
BisB5]
gi|123722247|sp|Q13EQ5|IHFB_RHOPS RecName: Full=Integration host factor subunit beta;
Short=IHF-beta
gi|91681132|gb|ABE37434.1| integration host factor, beta subunit [Rhodopseudomonas palustris
BisB5]
Length = 101
Score = 114 bits (286), Expect = 5e-24, Method: Composition-based stats.
Identities = 49/96 (51%), Positives = 64/96 (66%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
MIKS L+ IA+ NP L +DVE IVN +L+E+ ALA G RVE+RGFG+FSV+ R AR
Sbjct: 1 MIKSELVQRIAEHNPHLYQRDVENIVNAILDEIVDALARGDRVELRGFGAFSVKHRPARA 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDST 96
R P + V++K VPFF+ GK ++ERLN
Sbjct: 61 GRNPRTGAHVPVDQKSVPFFKTGKEMRERLNREPGN 96
>gi|326796011|ref|YP_004313831.1| Integration host factor subunit beta [Marinomonas mediterranea
MMB-1]
gi|326546775|gb|ADZ91995.1| Integration host factor subunit beta [Marinomonas mediterranea
MMB-1]
Length = 101
Score = 114 bits (285), Expect = 5e-24, Method: Composition-based stats.
Identities = 40/94 (42%), Positives = 58/94 (61%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI + + L +DVE + +L+ M+++LANG R+EIRGFGSFS+ RA R+
Sbjct: 1 MTKSELIEMLIDQQSHLPVKDVELAIKAVLDHMSESLANGERIEIRGFGSFSLHYRAPRV 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSPD 94
R P + + + K VP F+ GK L+E +N D
Sbjct: 61 GRNPKTGESVELTAKYVPHFKPGKELRELVNLDD 94
>gi|85714140|ref|ZP_01045129.1| integration host factor beta subunit [Nitrobacter sp. Nb-311A]
gi|85699266|gb|EAQ37134.1| integration host factor beta subunit [Nitrobacter sp. Nb-311A]
Length = 101
Score = 114 bits (285), Expect = 5e-24, Method: Composition-based stats.
Identities = 51/100 (51%), Positives = 69/100 (69%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
MIKS L+ IA+ NP L +DVE IVN +L+E+ ALA G RVE+RGFG+FSV+ R AR
Sbjct: 1 MIKSELVQRIAEHNPHLYQRDVENIVNAILDEIVAALARGDRVELRGFGAFSVKHRPARA 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDSTLSNS 100
R P + + V++K VPFF+ GK ++ERLN ++T S
Sbjct: 61 GRNPRTGEHVPVDQKSVPFFKTGKEMRERLNRENATSEAS 100
>gi|92115698|ref|YP_575427.1| integration host factor subunit beta [Nitrobacter hamburgensis X14]
gi|123083883|sp|Q1QS30|IHFB_NITHX RecName: Full=Integration host factor subunit beta; Short=IHF-beta
gi|91798592|gb|ABE60967.1| integration host factor, beta subunit [Nitrobacter hamburgensis
X14]
Length = 101
Score = 114 bits (285), Expect = 5e-24, Method: Composition-based stats.
Identities = 51/100 (51%), Positives = 69/100 (69%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
MIKS L+ IA+ NP L +DVE IVN +L+E+ ALA G RVE+RGFG+FSV+ R AR
Sbjct: 1 MIKSELVQRIAEHNPHLYQRDVENIVNAILDEIVTALARGDRVELRGFGAFSVKHRPARA 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDSTLSNS 100
R P + + V++K VPFF+ GK ++ERLN ++T S
Sbjct: 61 GRNPRTGEHVPVDQKSVPFFKTGKEMRERLNRENATSEAS 100
>gi|254447175|ref|ZP_05060642.1| integration host factor, beta subunit [gamma proteobacterium
HTCC5015]
gi|198263314|gb|EDY87592.1| integration host factor, beta subunit [gamma proteobacterium
HTCC5015]
Length = 102
Score = 114 bits (285), Expect = 5e-24, Method: Composition-based stats.
Identities = 43/95 (45%), Positives = 62/95 (65%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
KS LI +++K P L Y+DVE V LLEEM+ AL+ G R+EIRGFGSFS+ R R+
Sbjct: 8 TKSELIENLSRKQPHLAYKDVELAVKTLLEEMSNALSGGQRIEIRGFGSFSLHYRPPRVG 67
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDST 96
R P + +++ K VP F+ GK L+E +N +++
Sbjct: 68 RNPKTGESVALPGKYVPHFKPGKQLRECVNESEAS 102
>gi|197103657|ref|YP_002129034.1| integration host factor beta subunit [Phenylobacterium zucineum
HLK1]
gi|196477077|gb|ACG76605.1| integration host factor beta subunit [Phenylobacterium zucineum
HLK1]
Length = 120
Score = 114 bits (285), Expect = 5e-24, Method: Composition-based stats.
Identities = 49/95 (51%), Positives = 67/95 (70%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
MIKS LI +A++NP L +D+E++V ++LE M +AL GGRVE+RGFG+ SVR R AR
Sbjct: 25 MIKSELIAKLAEENPHLTQRDIERVVGVILERMIEALEEGGRVELRGFGALSVRSRDARA 84
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDS 95
R P + + V K VPFF++GK L+ERLN+ D
Sbjct: 85 GRNPRTGEPVDVRAKHVPFFKSGKELRERLNAVDE 119
>gi|15887688|ref|NP_353369.1| integration host factor subunit beta [Agrobacterium tumefaciens
str. C58]
gi|325291772|ref|YP_004277636.1| integration host factor subunit beta [Agrobacterium sp. H13-3]
gi|24418456|sp|Q8UIF9|IHFB_AGRT5 RecName: Full=Integration host factor subunit beta;
Short=IHF-beta
gi|15155245|gb|AAK86154.1| integration host factor, beta subunit [Agrobacterium tumefaciens
str. C58]
gi|325059625|gb|ADY63316.1| integration host factor subunit beta [Agrobacterium sp. H13-3]
Length = 100
Score = 114 bits (285), Expect = 5e-24, Method: Composition-based stats.
Identities = 51/91 (56%), Positives = 67/91 (73%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
MIKS L+ +A +NP L ++DVE IVN +L+E+T ALA G RVE+RGFG+FSV+ R +R
Sbjct: 1 MIKSELVQIVAARNPHLYHRDVENIVNAVLDEITDALAAGNRVELRGFGAFSVKNRPSRS 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + + VEEK VPFF+ GK L+ERLN
Sbjct: 61 GRNPRTGESVFVEEKWVPFFKTGKELRERLN 91
>gi|261344289|ref|ZP_05971933.1| integration host factor, beta subunit [Providencia rustigianii
DSM 4541]
gi|282567893|gb|EFB73428.1| integration host factor, beta subunit [Providencia rustigianii
DSM 4541]
Length = 95
Score = 114 bits (285), Expect = 5e-24, Method: Composition-based stats.
Identities = 40/91 (43%), Positives = 57/91 (62%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI +A + L+ + VE+ V +LE M LA+G R+E+RGFGSFS+ RA R+
Sbjct: 1 MTKSELIERLASQQSHLSAKTVEEAVKEILEHMADTLASGERIEVRGFGSFSLHYRAPRV 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + +E K VP F+ GK L++R+N
Sbjct: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRVN 91
>gi|83313103|ref|YP_423367.1| nucleoid DNA-binding protein [Magnetospirillum magneticum AMB-1]
gi|82947944|dbj|BAE52808.1| Bacterial nucleoid DNA-binding protein [Magnetospirillum
magneticum AMB-1]
Length = 99
Score = 114 bits (285), Expect = 5e-24, Method: Composition-based stats.
Identities = 47/91 (51%), Positives = 64/91 (70%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI +A+ NP L +DVE+IV + +E+ ALA G RVE+RGFG+FSV+KR R+
Sbjct: 4 MTKSELIARLAEANPHLYQRDVERIVTTIFDEIASALARGDRVELRGFGAFSVKKRDPRV 63
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + +SV+ K VPFF+ GK L+E+LN
Sbjct: 64 GRNPRTGETVSVDGKAVPFFKTGKQLREKLN 94
>gi|23016137|ref|ZP_00055896.1| COG0776: Bacterial nucleoid DNA-binding protein [Magnetospirillum
magnetotacticum MS-1]
Length = 99
Score = 114 bits (285), Expect = 5e-24, Method: Composition-based stats.
Identities = 47/91 (51%), Positives = 63/91 (69%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI +A+ NP L +DVE+IV + +E+ ALA G RVE+RGFG+FSV+KR R
Sbjct: 4 MTKSELIARLAEANPHLYQRDVERIVTTIFDEIASALARGDRVELRGFGAFSVKKRDPRT 63
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + +SV+ K VPFF+ GK L+E+LN
Sbjct: 64 GRNPRTGETVSVDGKAVPFFKTGKQLREKLN 94
>gi|260431167|ref|ZP_05785138.1| integration host factor, beta subunit [Silicibacter
lacuscaerulensis ITI-1157]
gi|260414995|gb|EEX08254.1| integration host factor, beta subunit [Silicibacter
lacuscaerulensis ITI-1157]
Length = 94
Score = 114 bits (285), Expect = 5e-24, Method: Composition-based stats.
Identities = 52/93 (55%), Positives = 68/93 (73%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
MI+S LI IA +NP L +DVE+IVN + EE+T A+A G RVE+RGFG+FSV+KR AR+
Sbjct: 1 MIRSELIQKIADENPHLYQRDVERIVNTVFEEITDAMARGDRVELRGFGAFSVKKRDARV 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSP 93
R P + + VEEK VPFF+ GK L++RLN
Sbjct: 61 GRNPRTGETVQVEEKCVPFFKTGKLLRDRLNGK 93
>gi|299066877|emb|CBJ38072.1| Integration host factor subunit beta (IHF-beta) [Ralstonia
solanacearum CMR15]
Length = 140
Score = 114 bits (285), Expect = 5e-24, Method: Composition-based stats.
Identities = 40/91 (43%), Positives = 61/91 (67%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS L+ +A + P+L +D + V +L+ M+ ALA+G R+EIRGFGSF + +R R+
Sbjct: 3 MTKSELVEKLAARFPQLLLRDADIAVKTILDAMSDALADGHRIEIRGFGSFGLNRRPPRV 62
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + + + V EK VP F+AGK L+ER++
Sbjct: 63 GRNPKSGEKVLVPEKRVPHFKAGKELRERVD 93
>gi|268590154|ref|ZP_06124375.1| integration host factor, beta subunit [Providencia rettgeri DSM
1131]
gi|291314429|gb|EFE54882.1| integration host factor, beta subunit [Providencia rettgeri DSM
1131]
Length = 95
Score = 114 bits (285), Expect = 5e-24, Method: Composition-based stats.
Identities = 41/91 (45%), Positives = 57/91 (62%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI +A + L+ + VE+ V +LE M LANG R+E+RGFGSFS+ RA R+
Sbjct: 1 MTKSELIERLASQQSHLSAKTVEEAVKEILEHMADTLANGERIEVRGFGSFSLHYRAPRV 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + +E K VP F+ GK L++R+N
Sbjct: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRVN 91
>gi|254481925|ref|ZP_05095168.1| integration host factor, beta subunit [marine gamma
proteobacterium HTCC2148]
gi|214038054|gb|EEB78718.1| integration host factor, beta subunit [marine gamma
proteobacterium HTCC2148]
Length = 98
Score = 114 bits (285), Expect = 5e-24, Method: Composition-based stats.
Identities = 43/91 (47%), Positives = 58/91 (63%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI TIA + +L+ +DVE V +LE M+ +LA+G R+EIRGFGSFS+ R R
Sbjct: 1 MTKSELIETIAARQSQLSSKDVELAVKTILEHMSHSLADGERIEIRGFGSFSLHYREPRR 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + + K VP F+ GK L+ER+N
Sbjct: 61 GRNPKTGDAVELTGKYVPHFKPGKELRERVN 91
>gi|212709793|ref|ZP_03317921.1| hypothetical protein PROVALCAL_00841 [Providencia alcalifaciens
DSM 30120]
gi|212687604|gb|EEB47132.1| hypothetical protein PROVALCAL_00841 [Providencia alcalifaciens
DSM 30120]
Length = 95
Score = 114 bits (285), Expect = 5e-24, Method: Composition-based stats.
Identities = 40/91 (43%), Positives = 56/91 (61%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI +A + L+ + VE+ V +LE M LA G R+E+RGFGSFS+ RA R+
Sbjct: 1 MTKSELIERLASQQSHLSAKTVEEAVKEILEHMADTLAEGERIEVRGFGSFSLHYRAPRV 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + +E K VP F+ GK L++R+N
Sbjct: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRVN 91
>gi|254449408|ref|ZP_05062845.1| integration host factor, beta subunit [Octadecabacter antarcticus
238]
gi|198263814|gb|EDY88084.1| integration host factor, beta subunit [Octadecabacter antarcticus
238]
Length = 117
Score = 114 bits (285), Expect = 6e-24, Method: Composition-based stats.
Identities = 50/93 (53%), Positives = 68/93 (73%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
MI+S L TIA++NP L +DVE+IVN + + +A++NG RVE+RGFG+FSV+KR ARL
Sbjct: 25 MIRSELTDTIAEQNPHLYQRDVERIVNTIFGRIIEAMSNGDRVELRGFGAFSVKKRDARL 84
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSP 93
R P + + VEEK VPFF+ GK L++RLN
Sbjct: 85 GRNPRTGEAVQVEEKHVPFFKTGKLLRDRLNGK 117
>gi|300704749|ref|YP_003746352.1| integration host factor subunit beta [Ralstonia solanacearum
CFBP2957]
gi|299072413|emb|CBJ43758.1| Integration host factor subunit beta (IHF-beta) [Ralstonia
solanacearum CFBP2957]
Length = 140
Score = 114 bits (285), Expect = 6e-24, Method: Composition-based stats.
Identities = 40/100 (40%), Positives = 62/100 (62%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS L+ +A + P+L +D + V +L+ M+ ALA+G R+EIRGFGSF + +R R+
Sbjct: 3 MTKSELVEKLAARFPQLLLRDADIAVKTILDAMSDALADGHRIEIRGFGSFGLNRRPPRV 62
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDSTLSNS 100
R P + + + V EK VP F+AGK L+ER++ +
Sbjct: 63 GRNPKSGEKVLVPEKRVPHFKAGKELRERVDRSLERQGET 102
>gi|238026537|ref|YP_002910768.1| integration host factor subunit beta [Burkholderia glumae BGR1]
gi|237875731|gb|ACR28064.1| Integration host factor, beta subunit [Burkholderia glumae BGR1]
Length = 108
Score = 114 bits (285), Expect = 6e-24, Method: Composition-based stats.
Identities = 39/91 (42%), Positives = 60/91 (65%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS L+ +A + P+L +D + V +L+ M+ AL+ G R+EIRGFGSF + +R AR+
Sbjct: 1 MTKSELVAQLATRFPQLVLKDADFAVKTMLDAMSDALSKGHRIEIRGFGSFGLNRRPARV 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + + + V EK VP F+ GK L+ER++
Sbjct: 61 GRNPKSGEKVQVPEKYVPHFKPGKELRERVD 91
>gi|254515152|ref|ZP_05127213.1| integration host factor, beta subunit [gamma proteobacterium
NOR5-3]
gi|219677395|gb|EED33760.1| integration host factor, beta subunit [gamma proteobacterium
NOR5-3]
Length = 98
Score = 114 bits (285), Expect = 6e-24, Method: Composition-based stats.
Identities = 41/91 (45%), Positives = 59/91 (64%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI IA K +L+ +DVE V ++E+M+ +L++GGR+EIRGFGSFS+ R R
Sbjct: 1 MTKSELIEAIALKQSQLSTKDVELAVKTVIEQMSNSLSSGGRIEIRGFGSFSLHYREPRR 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + + K VP F+ GK L++R+N
Sbjct: 61 GRNPKTGDAVELTGKYVPHFKPGKELRDRVN 91
>gi|241662464|ref|YP_002980824.1| integration host factor subunit beta [Ralstonia pickettii 12D]
gi|309781046|ref|ZP_07675784.1| integration host factor, beta subunit [Ralstonia sp. 5_7_47FAA]
gi|240864491|gb|ACS62152.1| integration host factor, beta subunit [Ralstonia pickettii 12D]
gi|308920112|gb|EFP65771.1| integration host factor, beta subunit [Ralstonia sp. 5_7_47FAA]
Length = 142
Score = 113 bits (284), Expect = 6e-24, Method: Composition-based stats.
Identities = 40/91 (43%), Positives = 61/91 (67%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS L+ +A + P+L +D + V +L+ M+ ALA+G R+EIRGFGSF + +R R+
Sbjct: 3 MTKSELVEKLAARFPQLLLRDADIAVKTILDAMSDALADGHRIEIRGFGSFGLNRRPPRV 62
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + + + V EK VP F+AGK L+ER++
Sbjct: 63 GRNPKSGEKVLVPEKRVPHFKAGKELRERVD 93
>gi|17545629|ref|NP_519031.1| integration host factor subunit beta [Ralstonia solanacearum
GMI1000]
gi|21362603|sp|Q8Y0Y3|IHFB_RALSO RecName: Full=Integration host factor subunit beta;
Short=IHF-beta
gi|17427922|emb|CAD14612.1| putative integration host factor beta-subunit (ihf-beta) protein
[Ralstonia solanacearum GMI1000]
Length = 138
Score = 113 bits (284), Expect = 6e-24, Method: Composition-based stats.
Identities = 40/91 (43%), Positives = 61/91 (67%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS L+ +A + P+L +D + V +L+ M+ ALA+G R+EIRGFGSF + +R R+
Sbjct: 1 MTKSELVEKLAARFPQLLLRDADIAVKTILDAMSDALADGHRIEIRGFGSFGLNRRPPRV 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + + + V EK VP F+AGK L+ER++
Sbjct: 61 GRNPKSGEKVLVPEKRVPHFKAGKELRERVD 91
>gi|88705967|ref|ZP_01103675.1| Integration host factor beta-subunit [Congregibacter litoralis
KT71]
gi|88699681|gb|EAQ96792.1| Integration host factor beta-subunit [Congregibacter litoralis
KT71]
Length = 98
Score = 113 bits (284), Expect = 6e-24, Method: Composition-based stats.
Identities = 41/91 (45%), Positives = 59/91 (64%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI IA K +L+ +DVE V ++E+M+ +L++GGR+EIRGFGSFS+ R R
Sbjct: 1 MTKSELIEAIALKQTQLSTKDVELAVKTVIEQMSNSLSSGGRIEIRGFGSFSLHYREPRR 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + + K VP F+ GK L++R+N
Sbjct: 61 GRNPKTGDAVELTGKYVPHFKPGKELRDRVN 91
>gi|325922080|ref|ZP_08183874.1| integration host factor, beta subunit [Xanthomonas gardneri ATCC
19865]
gi|325547417|gb|EGD18477.1| integration host factor, beta subunit [Xanthomonas gardneri ATCC
19865]
Length = 103
Score = 113 bits (284), Expect = 7e-24, Method: Composition-based stats.
Identities = 42/90 (46%), Positives = 57/90 (63%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI +A++ L DV+ V LLE M QAL++G R+EIRGFGSFS+ R RL
Sbjct: 1 MTKSELIEILAQRQAHLKSDDVDLAVKSLLEMMGQALSDGDRIEIRGFGSFSLHYRPPRL 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P + +++ K VP F+ GK L+ER+
Sbjct: 61 GRNPKTGESVALPGKHVPHFKPGKELRERV 90
>gi|183598363|ref|ZP_02959856.1| hypothetical protein PROSTU_01755 [Providencia stuartii ATCC
25827]
gi|188020539|gb|EDU58579.1| hypothetical protein PROSTU_01755 [Providencia stuartii ATCC
25827]
Length = 95
Score = 113 bits (284), Expect = 7e-24, Method: Composition-based stats.
Identities = 40/91 (43%), Positives = 55/91 (60%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI +A + L+ + VE V +LE M LA G R+E+RGFGSFS+ RA R+
Sbjct: 1 MTKSELIERLASQQSHLSAKTVEDAVKEILEHMADTLAGGERIEVRGFGSFSLHYRAPRV 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + +E K VP F+ GK L++R+N
Sbjct: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRVN 91
>gi|254470707|ref|ZP_05084110.1| integration host factor, beta subunit [Pseudovibrio sp. JE062]
gi|211959849|gb|EEA95046.1| integration host factor, beta subunit [Pseudovibrio sp. JE062]
Length = 99
Score = 113 bits (284), Expect = 7e-24, Method: Composition-based stats.
Identities = 51/91 (56%), Positives = 68/91 (74%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
MIKS L+ TIA++NP L +DVE IVN +L+E+T+AL G RVE+RGFG+FSV+ R AR+
Sbjct: 1 MIKSELVQTIAERNPHLYQRDVENIVNAILDEVTEALMRGDRVELRGFGAFSVKNRPARV 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + + V EK VPFF+ GK ++ERLN
Sbjct: 61 GRNPRTGQKVEVGEKFVPFFKTGKEMRERLN 91
>gi|73542253|ref|YP_296773.1| integration host factor subunit beta [Ralstonia eutropha JMP134]
gi|123760154|sp|Q46Y54|IHFB_RALEJ RecName: Full=Integration host factor subunit beta;
Short=IHF-beta
gi|72119666|gb|AAZ61929.1| Integration host factor, beta subunit [Ralstonia eutropha JMP134]
Length = 137
Score = 113 bits (284), Expect = 7e-24, Method: Composition-based stats.
Identities = 40/93 (43%), Positives = 61/93 (65%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS L+ +A + P+L +D + V +L+ M+ ALA+G R+EIRGFGSF + +R R+
Sbjct: 1 MTKSELVEKLAARFPQLLLRDADISVKTILDAMSDALADGHRIEIRGFGSFGLNRRPPRV 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSP 93
R P + + + V EK VP F+AGK L+ER++
Sbjct: 61 GRNPKSGERVLVPEKRVPHFKAGKELRERVDRN 93
>gi|110635997|ref|YP_676205.1| integration host factor, beta subunit [Mesorhizobium sp. BNC1]
gi|123161580|sp|Q11C35|IHFB_MESSB RecName: Full=Integration host factor subunit beta;
Short=IHF-beta
gi|110286981|gb|ABG65040.1| integration host factor, beta subunit [Chelativorans sp. BNC1]
Length = 94
Score = 113 bits (284), Expect = 7e-24, Method: Composition-based stats.
Identities = 53/94 (56%), Positives = 69/94 (73%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
MIKS L+ TIA +NP L +DVE IVN + +E+T+ALA G RVE+RGFG+FSV+ R AR
Sbjct: 1 MIKSELVQTIANRNPHLFLRDVENIVNAIFDEITEALAQGNRVELRGFGAFSVKNRPART 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSPD 94
R P + + VEEK VPFF+ GK L+ERLN+ +
Sbjct: 61 GRNPRTGESVHVEEKWVPFFKTGKELRERLNADE 94
>gi|298293882|ref|YP_003695821.1| integration host factor subunit beta [Starkeya novella DSM 506]
gi|296930393|gb|ADH91202.1| integration host factor, beta subunit [Starkeya novella DSM 506]
Length = 97
Score = 113 bits (284), Expect = 7e-24, Method: Composition-based stats.
Identities = 48/92 (52%), Positives = 65/92 (70%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
MIKS L+ IA+ NP L +DVE IVN +L+E+ ALA G RVE+RGFG+FSV+ R AR
Sbjct: 1 MIKSELVQRIAEANPHLYQRDVENIVNAILDEIVTALARGDRVELRGFGAFSVKSRPART 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P ++V+ K VP+F+ GK ++ERLN+
Sbjct: 61 GRNPRTGAHVAVDGKAVPYFKTGKEMRERLNN 92
>gi|149377378|ref|ZP_01895122.1| integration host factor, beta subunit [Marinobacter algicola
DG893]
gi|149358302|gb|EDM46780.1| integration host factor, beta subunit [Marinobacter algicola
DG893]
Length = 98
Score = 113 bits (284), Expect = 7e-24, Method: Composition-based stats.
Identities = 43/96 (44%), Positives = 61/96 (63%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS L+ IA K +L+ +DVE V ++E M+Q+LA+G R+EIRGFGSFS+ RAAR
Sbjct: 1 MTKSELVELIASKQTQLSVKDVELAVKTIIEHMSQSLADGQRIEIRGFGSFSLHHRAART 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDST 96
R P + + + K VP F+ GK L+E++N
Sbjct: 61 GRNPKTGEAVQLPAKFVPHFKPGKELREQVNDSLKK 96
>gi|194288914|ref|YP_002004821.1| integration host factor subunit beta [Cupriavidus taiwanensis LMG
19424]
gi|193222749|emb|CAQ68752.1| Integration host factor, beta subunit [Cupriavidus taiwanensis
LMG 19424]
Length = 141
Score = 113 bits (284), Expect = 7e-24, Method: Composition-based stats.
Identities = 40/91 (43%), Positives = 62/91 (68%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS L+ +A + P+L +D + V +L+ M++ALA+G R+EIRGFGSF + +R R+
Sbjct: 3 MTKSELVEKLAARFPQLLLRDADISVKTILDAMSEALADGHRIEIRGFGSFGLNRRPPRV 62
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + + + V EK VP F+AGK L+ER++
Sbjct: 63 GRNPKSGERVLVPEKRVPHFKAGKELRERVD 93
>gi|49073590|gb|AAT49331.1| PA3161 [synthetic construct]
Length = 95
Score = 113 bits (284), Expect = 7e-24, Method: Composition-based stats.
Identities = 42/95 (44%), Positives = 61/95 (64%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI I +L+ +DVE + +LE+M+QALA G R+EIRGFGS S+ RA R+
Sbjct: 1 MTKSELIERIVTHQGQLSAKDVELAIKTMLEQMSQALATGDRIEIRGFGSVSLHYRAPRV 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDS 95
R P + + ++ K VP F+ GK L++R+N P+
Sbjct: 61 GRNPKTGESVRLDGKFVPHFKPGKELRDRVNEPEG 95
>gi|317402986|gb|EFV83525.1| integration host factor beta-subunit [Achromobacter xylosoxidans
C54]
Length = 119
Score = 113 bits (284), Expect = 7e-24, Method: Composition-based stats.
Identities = 47/105 (44%), Positives = 67/105 (63%), Gaps = 5/105 (4%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI +A + P+L +D + V +L+ MTQALA+G R+EIRGFGSFS+ +R+ R+
Sbjct: 1 MTKSELIAALAARYPQLAARDTDYAVKTVLDAMTQALASGQRIEIRGFGSFSLSQRSPRI 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL-----NSPDSTLSNS 100
R P + + + V K VP F+AGK L+ER+ N D+ S S
Sbjct: 61 GRNPKSGEQVLVPGKQVPHFKAGKELRERVDLVGGNDEDAQSSGS 105
>gi|311104917|ref|YP_003977770.1| integration host factor subunit beta [Achromobacter xylosoxidans
A8]
gi|310759606|gb|ADP15055.1| integration host factor, beta subunit [Achromobacter xylosoxidans
A8]
Length = 119
Score = 113 bits (284), Expect = 7e-24, Method: Composition-based stats.
Identities = 47/105 (44%), Positives = 67/105 (63%), Gaps = 5/105 (4%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI +A + P+L +D + V +L+ MTQALA+G R+EIRGFGSFS+ +R+ R+
Sbjct: 1 MTKSELIAALAARYPQLAARDTDYAVKTVLDAMTQALASGQRIEIRGFGSFSLSQRSPRI 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL-----NSPDSTLSNS 100
R P + + + V K VP F+AGK L+ER+ N D+ S S
Sbjct: 61 GRNPKSGEQVLVPGKQVPHFKAGKELRERVDLAGGNDEDAQSSGS 105
>gi|293604178|ref|ZP_06686586.1| integration host factor beta subunit [Achromobacter piechaudii ATCC
43553]
gi|292817403|gb|EFF76476.1| integration host factor beta subunit [Achromobacter piechaudii ATCC
43553]
Length = 119
Score = 113 bits (284), Expect = 7e-24, Method: Composition-based stats.
Identities = 47/105 (44%), Positives = 67/105 (63%), Gaps = 5/105 (4%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI +A + P+L +D + V +L+ MTQALA+G R+EIRGFGSFS+ +R+ R+
Sbjct: 1 MTKSELIAALAARYPQLAARDTDYAVKTVLDAMTQALASGQRIEIRGFGSFSLSQRSPRI 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL-----NSPDSTLSNS 100
R P + + + V K VP F+AGK L+ER+ N D+ S S
Sbjct: 61 GRNPKSGEQVLVPGKQVPHFKAGKELRERVDLVGGNDEDAQSSGS 105
>gi|149204022|ref|ZP_01880990.1| integration host factor subunit beta [Roseovarius sp. TM1035]
gi|149142464|gb|EDM30509.1| integration host factor subunit beta [Roseovarius sp. TM1035]
Length = 93
Score = 113 bits (284), Expect = 7e-24, Method: Composition-based stats.
Identities = 52/93 (55%), Positives = 66/93 (70%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
MI+S LI IA +NP L +DVE+IVN + E+T ALA G RVE+RGFG+FSV+KR AR
Sbjct: 1 MIRSELIQKIADENPHLYQRDVERIVNTIFNEITDALAEGNRVELRGFGAFSVKKRDART 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSP 93
R P + + VEEK VPFF+ GK L++RLN
Sbjct: 61 GRNPRTGESVHVEEKNVPFFKTGKLLRDRLNGK 93
>gi|163734570|ref|ZP_02142009.1| integration host factor subunit beta [Roseobacter litoralis Och
149]
gi|161392063|gb|EDQ16393.1| integration host factor subunit beta [Roseobacter litoralis Och
149]
Length = 94
Score = 113 bits (284), Expect = 7e-24, Method: Composition-based stats.
Identities = 52/93 (55%), Positives = 68/93 (73%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
MI+S LI IA +NP L +DVE+IVN + EE+T A+A G RVE+RGFG+FSV+KR AR+
Sbjct: 1 MIRSELIQKIADENPHLYQRDVERIVNTIFEEVTDAMARGDRVELRGFGAFSVKKRDARV 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSP 93
R P + + VEEK VPFF+ GK L++RLN
Sbjct: 61 GRNPRTGETVHVEEKHVPFFKTGKLLRDRLNGK 93
>gi|83854722|ref|ZP_00948252.1| integration host factor beta subunit [Sulfitobacter sp. NAS-14.1]
gi|83941245|ref|ZP_00953707.1| integration host factor beta subunit [Sulfitobacter sp. EE-36]
gi|83842565|gb|EAP81732.1| integration host factor beta subunit [Sulfitobacter sp. NAS-14.1]
gi|83847065|gb|EAP84940.1| integration host factor beta subunit [Sulfitobacter sp. EE-36]
Length = 94
Score = 113 bits (284), Expect = 8e-24, Method: Composition-based stats.
Identities = 51/93 (54%), Positives = 68/93 (73%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
MI+S LI IA NP L +DVE+IVN + EE+T A+++G RVE+RGFG+FSV+KR AR+
Sbjct: 1 MIRSELIQKIADDNPHLYQRDVERIVNTIFEEITGAMSDGDRVELRGFGAFSVKKRDARV 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSP 93
R P + + VEEK VPFF+ GK L++RLN
Sbjct: 61 GRNPRTGETVHVEEKHVPFFKTGKLLRDRLNGN 93
>gi|75674257|ref|YP_316678.1| integration host factor subunit beta [Nitrobacter winogradskyi
Nb-255]
gi|123759426|sp|Q3SWL5|IHFB_NITWN RecName: Full=Integration host factor subunit beta;
Short=IHF-beta
gi|74419127|gb|ABA03326.1| integration host factor, beta subunit [Nitrobacter winogradskyi
Nb-255]
Length = 101
Score = 113 bits (284), Expect = 8e-24, Method: Composition-based stats.
Identities = 50/96 (52%), Positives = 68/96 (70%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
MIKS L+ IA+ NP L +DVE IVN +L+E+ ALA G RVE+RGFG+FSV+ R AR
Sbjct: 1 MIKSELVQRIAEHNPHLYQRDVENIVNAILDEIVAALARGDRVELRGFGAFSVKHRPARA 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDST 96
R P + + V++K VPFF+ GK ++ERLN ++T
Sbjct: 61 GRNPRTGEHVPVDQKSVPFFKTGKEMRERLNRDNAT 96
>gi|300692112|ref|YP_003753107.1| integration host factor subunit beta (IHF-beta) [Ralstonia
solanacearum PSI07]
gi|299079172|emb|CBJ51840.1| Integration host factor subunit beta (IHF-beta) [Ralstonia
solanacearum PSI07]
Length = 140
Score = 113 bits (284), Expect = 8e-24, Method: Composition-based stats.
Identities = 40/100 (40%), Positives = 62/100 (62%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS L+ +A + P+L +D + V +L+ M+ ALA+G R+EIRGFGSF + +R R+
Sbjct: 3 MTKSELVEKLAARFPQLLLRDADIAVKTILDAMSDALADGHRIEIRGFGSFGLNRRPPRV 62
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDSTLSNS 100
R P + + + V EK VP F+AGK L+ER++ +
Sbjct: 63 GRNPKSGEKVLVPEKRVPHFKAGKELRERVDRSLERQGET 102
>gi|83749857|ref|ZP_00946825.1| Integration host factor beta-subunit [Ralstonia solanacearum UW551]
gi|207725367|ref|YP_002255763.1| integration host factor beta-subunit (ihf-beta) protein [Ralstonia
solanacearum MolK2]
gi|207743934|ref|YP_002260326.1| integration host factor beta-subunit (ihf-beta) protein [Ralstonia
solanacearum IPO1609]
gi|83723470|gb|EAP70680.1| Integration host factor beta-subunit [Ralstonia solanacearum UW551]
gi|206590603|emb|CAQ37565.1| integration host factor beta-subunit (ihf-beta) protein [Ralstonia
solanacearum MolK2]
gi|206595336|emb|CAQ62263.1| integration host factor beta-subunit (ihf-beta) protein [Ralstonia
solanacearum IPO1609]
Length = 140
Score = 113 bits (283), Expect = 8e-24, Method: Composition-based stats.
Identities = 40/100 (40%), Positives = 62/100 (62%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS L+ +A + P+L +D + V +L+ M+ ALA+G R+EIRGFGSF + +R R+
Sbjct: 3 MTKSELVEKLAARFPQLLLRDADIAVKTILDAMSDALADGHRIEIRGFGSFGLNRRPPRV 62
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDSTLSNS 100
R P + + + V EK VP F+AGK L+ER++ +
Sbjct: 63 GRNPKSGEKVLVPEKRVPHFKAGKELRERVDRSLERQGET 102
>gi|222084668|ref|YP_002543197.1| integration host factor, beta subunit [Agrobacterium radiobacter
K84]
gi|254803525|sp|B9J885|IHFB_AGRRK RecName: Full=Integration host factor subunit beta;
Short=IHF-beta
gi|221722116|gb|ACM25272.1| integration host factor, beta subunit [Agrobacterium radiobacter
K84]
Length = 102
Score = 113 bits (283), Expect = 8e-24, Method: Composition-based stats.
Identities = 51/91 (56%), Positives = 66/91 (72%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
MIKS L+ +A +NP L ++DVE IVN +L+E+T ALA G RVE+RGFG+FSV+ R +R
Sbjct: 1 MIKSELVQIVAARNPHLYHRDVENIVNAVLDEITDALAAGNRVELRGFGAFSVKNRPSRS 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + VEEK VPFF+ GK L+ERLN
Sbjct: 61 GRNPRTGDTVFVEEKWVPFFKTGKELRERLN 91
>gi|217976340|ref|YP_002360487.1| integration host factor, beta subunit [Methylocella silvestris
BL2]
gi|254803537|sp|B8EMZ0|IHFB_METSB RecName: Full=Integration host factor subunit beta;
Short=IHF-beta
gi|217501716|gb|ACK49125.1| integration host factor, beta subunit [Methylocella silvestris
BL2]
Length = 96
Score = 113 bits (283), Expect = 9e-24, Method: Composition-based stats.
Identities = 52/92 (56%), Positives = 70/92 (76%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
MIKS L+ IA +NP L +DVEKIVN +L+E+T AL+ G RVE+RGFG+FSV+ R AR+
Sbjct: 1 MIKSELVQRIADRNPHLYLRDVEKIVNAILDEITNALSRGDRVELRGFGAFSVKHRDARV 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P +SV+EK+VPFF+ GK ++ERLN+
Sbjct: 61 GRNPRTGAHVSVDEKVVPFFKTGKEMRERLNN 92
>gi|146306886|ref|YP_001187351.1| integration host factor subunit beta [Pseudomonas mendocina ymp]
gi|166975881|sp|A4XTF3|IHFB_PSEMY RecName: Full=Integration host factor subunit beta;
Short=IHF-beta
gi|145575087|gb|ABP84619.1| integration host factor, beta subunit [Pseudomonas mendocina ymp]
Length = 95
Score = 113 bits (283), Expect = 9e-24, Method: Composition-based stats.
Identities = 43/95 (45%), Positives = 62/95 (65%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI I +L+ +DVE + +LE+M+QALA G R+EIRGFGSFS+ RA R+
Sbjct: 1 MTKSELIERIVTHQGQLSSKDVELAIKTMLEQMSQALATGDRIEIRGFGSFSLHYRAPRV 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDS 95
R P + + ++ K VP F+ GK L++R+N +S
Sbjct: 61 GRNPKTGQSVRLDGKFVPHFKPGKELRDRVNEDES 95
>gi|99080043|ref|YP_612197.1| integration host factor subunit beta [Ruegeria sp. TM1040]
gi|259415365|ref|ZP_05739286.1| integration host factor, beta subunit [Silicibacter sp.
TrichCH4B]
gi|122984465|sp|Q1GK81|IHFB_SILST RecName: Full=Integration host factor subunit beta;
Short=IHF-beta
gi|99036323|gb|ABF62935.1| integration host factor beta subunit [Ruegeria sp. TM1040]
gi|259348595|gb|EEW60357.1| integration host factor, beta subunit [Silicibacter sp.
TrichCH4B]
Length = 95
Score = 113 bits (283), Expect = 9e-24, Method: Composition-based stats.
Identities = 51/95 (53%), Positives = 69/95 (72%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
MI+S LI IA +NP L +DVE+IVN + EE+T A++ G RVE+RGFG+FSV+KR AR+
Sbjct: 1 MIRSELIQKIADENPHLYQRDVERIVNTVFEEVTNAMSRGDRVELRGFGAFSVKKRDARV 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDS 95
R P + + VEEK VPFF+ GK L++RLN +
Sbjct: 61 GRNPRTGETVHVEEKHVPFFKTGKLLRDRLNGKEE 95
>gi|299133339|ref|ZP_07026534.1| integration host factor, beta subunit [Afipia sp. 1NLS2]
gi|298593476|gb|EFI53676.1| integration host factor, beta subunit [Afipia sp. 1NLS2]
Length = 103
Score = 113 bits (283), Expect = 1e-23, Method: Composition-based stats.
Identities = 50/93 (53%), Positives = 65/93 (69%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
MIKS L+ IA+ NP L +DVE IVN +LEE+ AL+ G RVE+RGFG+FSV+ R AR
Sbjct: 1 MIKSELVQRIAEHNPHLYQRDVENIVNAILEEIVSALSRGDRVELRGFGAFSVKHRPARA 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSP 93
R P + + VE+K VPFF+ GK ++ERLN
Sbjct: 61 GRNPRTGEHVPVEQKSVPFFKTGKEMRERLNRN 93
>gi|148251722|ref|YP_001236307.1| integration host factor subunit beta [Bradyrhizobium sp. BTAi1]
gi|166918540|sp|A5E8A7|IHFB_BRASB RecName: Full=Integration host factor subunit beta;
Short=IHF-beta
gi|146403895|gb|ABQ32401.1| Integration host factor beta-subunit (IHF-beta) [Bradyrhizobium
sp. BTAi1]
Length = 103
Score = 113 bits (283), Expect = 1e-23, Method: Composition-based stats.
Identities = 49/94 (52%), Positives = 65/94 (69%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
MIKS L+ IA+ NP L +DVE IVN +L+E+ ALA G RVE+RGFG+FSV+ R AR
Sbjct: 1 MIKSELVQRIAEHNPHLYQRDVENIVNAILDEIVAALARGDRVELRGFGAFSVKHRPARA 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSPD 94
R P + V++K VPFF+ GK ++ERLN +
Sbjct: 61 GRNPRTGAHVPVDQKSVPFFKTGKEMRERLNRDN 94
>gi|27375853|ref|NP_767382.1| integration host factor subunit beta [Bradyrhizobium japonicum
USDA 110]
gi|81740124|sp|Q89WE8|IHFB_BRAJA RecName: Full=Integration host factor subunit beta;
Short=IHF-beta
gi|27348991|dbj|BAC46007.1| integration host factor beta subunit [Bradyrhizobium japonicum
USDA 110]
Length = 101
Score = 113 bits (283), Expect = 1e-23, Method: Composition-based stats.
Identities = 50/91 (54%), Positives = 64/91 (70%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
MIKS L+ IA+ NP L +DVE IVN +LEE+ ALA G RVE+RGFG+FSV+ R AR
Sbjct: 1 MIKSELVQRIAEHNPHLYQRDVENIVNAILEEIVAALARGDRVELRGFGAFSVKHRPARA 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + V++K VPFF+ GK ++ERLN
Sbjct: 61 GRNPRTGAHVPVDQKSVPFFKTGKEMRERLN 91
>gi|254460326|ref|ZP_05073742.1| integration host factor, beta subunit [Rhodobacterales bacterium
HTCC2083]
gi|206676915|gb|EDZ41402.1| integration host factor, beta subunit [Rhodobacteraceae bacterium
HTCC2083]
Length = 93
Score = 113 bits (283), Expect = 1e-23, Method: Composition-based stats.
Identities = 50/93 (53%), Positives = 68/93 (73%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
MI+S LI +A +NP L +DVE+IVN + EE+T+ +A G RVE+RGFG+FSV+KR AR+
Sbjct: 1 MIRSELIQKLADENPHLYQRDVERIVNTVFEEITETMARGDRVELRGFGAFSVKKRDARV 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSP 93
R P + + VEEK VPFF+ GK L++RLN
Sbjct: 61 GRNPRTGESVPVEEKHVPFFKTGKLLRDRLNGK 93
>gi|329894498|ref|ZP_08270312.1| Integration host factor beta subunit [gamma proteobacterium
IMCC3088]
gi|328923023|gb|EGG30348.1| Integration host factor beta subunit [gamma proteobacterium
IMCC3088]
Length = 97
Score = 113 bits (283), Expect = 1e-23, Method: Composition-based stats.
Identities = 44/92 (47%), Positives = 59/92 (64%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI IA K +L+ +DVE V +LE+M+ AL++G R+EIRGFGSFS+ R RL
Sbjct: 1 MTKSELIEAIAAKQTQLSLKDVELAVKSVLEQMSDALSSGDRIEIRGFGSFSLHYREPRL 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P + + K VP F+ GK L+ER+N
Sbjct: 61 GRNPKTGDSVDLNGKYVPHFKPGKELRERVNK 92
>gi|21243032|ref|NP_642614.1| integration host factor subunit beta [Xanthomonas axonopodis pv.
citri str. 306]
gi|24418455|sp|Q8PK78|IHFB_XANAC RecName: Full=Integration host factor subunit beta;
Short=IHF-beta
gi|21108541|gb|AAM37150.1| integration host factor beta subunit [Xanthomonas axonopodis pv.
citri str. 306]
Length = 103
Score = 113 bits (283), Expect = 1e-23, Method: Composition-based stats.
Identities = 42/90 (46%), Positives = 57/90 (63%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI +A++ L DV+ V LLE M QAL++G R+EIRGFGSFS+ R RL
Sbjct: 1 MTKSELIEILARRQAHLKSDDVDLAVKSLLEMMGQALSDGDRIEIRGFGSFSLHYRPPRL 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P + +++ K VP F+ GK L+ER+
Sbjct: 61 GRNPKTGESVALPGKHVPHFKPGKELRERV 90
>gi|90421919|ref|YP_530289.1| integration host factor subunit beta [Rhodopseudomonas palustris
BisB18]
gi|123275679|sp|Q21CB6|IHFB_RHOPB RecName: Full=Integration host factor subunit beta;
Short=IHF-beta
gi|90103933|gb|ABD85970.1| integration host factor, beta subunit [Rhodopseudomonas palustris
BisB18]
Length = 101
Score = 113 bits (283), Expect = 1e-23, Method: Composition-based stats.
Identities = 49/91 (53%), Positives = 64/91 (70%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
MIKS L+ IA+ NP L +DVE IVN +L+E+ ALA G RVE+RGFG+FSV+ R AR
Sbjct: 1 MIKSELVQRIAEHNPHLYQRDVENIVNAILDEIVAALARGDRVELRGFGAFSVKHRPARA 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + V++K VPFF+ GK ++ERLN
Sbjct: 61 GRNPRTGAHVPVDQKSVPFFKTGKEMRERLN 91
>gi|254490897|ref|ZP_05104079.1| integration host factor, beta subunit [Methylophaga thiooxidans
DMS010]
gi|224463806|gb|EEF80073.1| integration host factor, beta subunit [Methylophaga thiooxydans
DMS010]
Length = 96
Score = 112 bits (282), Expect = 1e-23, Method: Composition-based stats.
Identities = 41/91 (45%), Positives = 64/91 (70%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI +++K LNY+DVE V ++LE+M+ +L+ G R+EIRGFGSF++ R R+
Sbjct: 1 MTKSDLIEVLSEKQSLLNYRDVELAVKLILEQMSDSLSQGDRIEIRGFGSFTLHHRPPRV 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + + + ++EK VP F+ GK L++R+N
Sbjct: 61 GRNPKSGESVKLDEKYVPHFKPGKELRDRVN 91
>gi|209965767|ref|YP_002298682.1| integration host factor, beta subunit [Rhodospirillum centenum
SW]
gi|226709803|sp|B6IUP4|IHFB_RHOCS RecName: Full=Integration host factor subunit beta;
Short=IHF-beta
gi|209959233|gb|ACI99869.1| integration host factor, beta subunit [Rhodospirillum centenum
SW]
Length = 93
Score = 112 bits (282), Expect = 1e-23, Method: Composition-based stats.
Identities = 50/93 (53%), Positives = 67/93 (72%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI +A++NP L +DVEKIV + +E+T ALA G RVE+RGFG+FSV+KR ARL
Sbjct: 1 MTKSELILRLAERNPHLYQRDVEKIVTTIFDEITDALARGDRVELRGFGAFSVKKRDARL 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSP 93
R P + + V +K +PFF+ GK L+ERLN+
Sbjct: 61 GRNPRTGETVDVNQKFIPFFKTGKQLRERLNTD 93
>gi|254512178|ref|ZP_05124245.1| integration host factor, beta subunit [Rhodobacteraceae bacterium
KLH11]
gi|221535889|gb|EEE38877.1| integration host factor, beta subunit [Rhodobacteraceae bacterium
KLH11]
Length = 94
Score = 112 bits (282), Expect = 1e-23, Method: Composition-based stats.
Identities = 51/93 (54%), Positives = 68/93 (73%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
MI+S LI IA +NP L +DVE+IVN + EE+T A++ G RVE+RGFG+FSV+KR AR+
Sbjct: 1 MIRSELIQKIADENPHLYQRDVERIVNTVFEEVTDAMSRGDRVELRGFGAFSVKKRDARV 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSP 93
R P + + VEEK VPFF+ GK L++RLN
Sbjct: 61 GRNPRTGETVQVEEKCVPFFKTGKLLRDRLNGK 93
>gi|295691409|ref|YP_003595102.1| integration host factor subunit beta [Caulobacter segnis ATCC
21756]
gi|295433312|gb|ADG12484.1| integration host factor, beta subunit [Caulobacter segnis ATCC
21756]
Length = 96
Score = 112 bits (282), Expect = 1e-23, Method: Composition-based stats.
Identities = 48/93 (51%), Positives = 64/93 (68%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
MIKS LI +A +NP L +DVE++V ++LE M AL +GGRVE+RGFG+ SVR R AR
Sbjct: 1 MIKSELIARLANENPHLTQKDVERVVGVILERMIGALEDGGRVELRGFGALSVRSRPART 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSP 93
R P + + V K VPFF++GK L+ RLN+
Sbjct: 61 GRNPRTGEAVEVRAKHVPFFKSGKELRARLNAD 93
>gi|312795456|ref|YP_004028378.1| integration host factor beta-subunit [Burkholderia rhizoxinica
HKI 454]
gi|312167231|emb|CBW74234.1| Integration host factor beta-subunit [Burkholderia rhizoxinica
HKI 454]
Length = 109
Score = 112 bits (282), Expect = 1e-23, Method: Composition-based stats.
Identities = 41/93 (44%), Positives = 62/93 (66%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS L+ +A + P+L +D + V +L+ M+ ALANG R+EIRGFGSF++ +R AR+
Sbjct: 1 MTKSELVAQLALRFPQLVLKDADFAVKAMLDAMSDALANGHRIEIRGFGSFALNRRPARV 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSP 93
R P + + + V EK VP F+ GK L+ER++
Sbjct: 61 GRNPKSGERVQVPEKWVPHFKPGKELRERVDGK 93
>gi|33597659|ref|NP_885302.1| integration host factor beta-subunit [Bordetella parapertussis
12822]
gi|81713696|sp|Q7W605|IHFB_BORPA RecName: Full=Integration host factor subunit beta;
Short=IHF-beta
gi|33574087|emb|CAE38412.1| integration host factor beta-subunit [Bordetella parapertussis]
Length = 119
Score = 112 bits (282), Expect = 1e-23, Method: Composition-based stats.
Identities = 43/91 (47%), Positives = 63/91 (69%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI +A + P+L +D + V +L+ MTQALA+G R+EIRGFGSFS+ +R+ R+
Sbjct: 1 MTKSELIAALAARYPQLAARDTDYAVKTMLDAMTQALASGQRIEIRGFGSFSLSQRSPRI 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + + + V K VP F+AGK L+ER++
Sbjct: 61 GRNPKSGEQVLVPGKQVPHFKAGKELRERVD 91
>gi|26988504|ref|NP_743929.1| integration host factor subunit beta [Pseudomonas putida KT2440]
gi|60392452|sp|P0A128|IHFB_PSEPK RecName: Full=Integration host factor subunit beta; Short=IHF-beta
gi|60392453|sp|P0A129|IHFB_PSEPU RecName: Full=Integration host factor subunit beta; Short=IHF-beta
gi|24983270|gb|AAN67393.1|AE016366_1 integration host factor, beta subunit [Pseudomonas putida KT2440]
gi|1435201|gb|AAB04061.1| IhfB [Pseudomonas putida]
gi|313500060|gb|ADR61426.1| IhfB [Pseudomonas putida BIRD-1]
Length = 100
Score = 112 bits (282), Expect = 1e-23, Method: Composition-based stats.
Identities = 43/100 (43%), Positives = 63/100 (63%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI I L+ +DVE + +LE+M+Q LA G R+EIRGFGSFS+ RA R+
Sbjct: 1 MTKSELIERIVTHQGLLSSKDVELAIKTMLEQMSQCLATGDRIEIRGFGSFSLHYRAPRV 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDSTLSNS 100
R P + +S+E K VP F+ GK L++R+N + +++
Sbjct: 61 GRNPKTGQSVSLEGKFVPHFKPGKELRDRVNEDEHEEAHT 100
>gi|126735022|ref|ZP_01750768.1| integration host factor, beta subunit [Roseobacter sp. CCS2]
gi|126715577|gb|EBA12442.1| integration host factor, beta subunit [Roseobacter sp. CCS2]
Length = 93
Score = 112 bits (282), Expect = 1e-23, Method: Composition-based stats.
Identities = 48/91 (52%), Positives = 67/91 (73%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
MI+S LI +A +NP L +DVE+IVN + EE+ +A+A G RVE+RGFG+FSV+KR R+
Sbjct: 1 MIRSELIQKLADENPHLYQRDVERIVNTIFEEIIEAMARGDRVELRGFGAFSVKKRDQRI 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + + V+EK VPFF+ GK L++RLN
Sbjct: 61 GRNPRTGEAVEVDEKHVPFFKTGKLLRDRLN 91
>gi|16127816|ref|NP_422380.1| integration host factor subunit beta [Caulobacter crescentus
CB15]
gi|221236637|ref|YP_002519074.1| integration host factor subunit beta [Caulobacter crescentus
NA1000]
gi|21362615|sp|Q9A2H5|IHFB_CAUCR RecName: Full=Integration host factor subunit beta;
Short=IHF-beta
gi|254803531|sp|B8H6A5|IHFB_CAUCN RecName: Full=Integration host factor subunit beta;
Short=IHF-beta
gi|13425330|gb|AAK25548.1| integration host factor beta subunit [Caulobacter crescentus
CB15]
gi|220965810|gb|ACL97166.1| integration host factor beta-subunit [Caulobacter crescentus
NA1000]
Length = 96
Score = 112 bits (282), Expect = 1e-23, Method: Composition-based stats.
Identities = 48/93 (51%), Positives = 64/93 (68%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
MIKS LI +A +NP L +DVE++V ++LE M AL +GGRVE+RGFG+ SVR R AR
Sbjct: 1 MIKSELIARLANENPHLTQKDVERVVGVILERMIGALEDGGRVELRGFGALSVRSRPART 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSP 93
R P + + V K VPFF++GK L+ RLN+
Sbjct: 61 GRNPRTGEAVDVRAKHVPFFKSGKELRARLNAD 93
>gi|296282081|ref|ZP_06860079.1| integration host factor beta-subunit [Citromicrobium
bathyomarinum JL354]
Length = 93
Score = 112 bits (282), Expect = 1e-23, Method: Composition-based stats.
Identities = 42/91 (46%), Positives = 63/91 (69%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
MI+S L+ +A+ NP+L Q+VE++V++ EE+ Q LA GGR+E+RGFG+FS R+R AR
Sbjct: 1 MIRSELLQKLAQDNPELRAQEVEQVVDIFFEEIAQRLAEGGRIELRGFGAFSTREREART 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + + V K VP+F+ GK ++ LN
Sbjct: 61 GRNPRTGEAVDVPAKRVPYFKPGKEMRNALN 91
>gi|222147331|ref|YP_002548288.1| integration host factor subunit beta [Agrobacterium vitis S4]
gi|254803526|sp|B9JZH2|IHFB_AGRVS RecName: Full=Integration host factor subunit beta;
Short=IHF-beta
gi|221734321|gb|ACM35284.1| integration host factor beta subunit [Agrobacterium vitis S4]
Length = 103
Score = 112 bits (282), Expect = 1e-23, Method: Composition-based stats.
Identities = 51/91 (56%), Positives = 67/91 (73%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
MIKS L+ +A +NP L ++DVE IVN +L+E+T ALA+G RVE+RGFG+FSV+ R +R
Sbjct: 1 MIKSELVQIVAARNPHLYHRDVENIVNAVLDEITDALASGNRVELRGFGAFSVKNRPSRT 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + VEEK VPFF+ GK L+ERLN
Sbjct: 61 GRNPRTGDTVFVEEKWVPFFKTGKELRERLN 91
>gi|269138351|ref|YP_003295051.1| transcriptional regulator HU subunit beta [Edwardsiella tarda
EIB202]
gi|267984011|gb|ACY83840.1| transcriptional regulator HU subunit beta [Edwardsiella tarda
EIB202]
gi|304558383|gb|ADM41047.1| DNA-binding protein HU-beta [Edwardsiella tarda FL6-60]
Length = 90
Score = 112 bits (282), Expect = 1e-23, Method: Composition-based stats.
Identities = 34/91 (37%), Positives = 51/91 (56%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI IA+ ++ + ++ + +T++L G V + GFG+F VR+RAAR
Sbjct: 1 MNKSQLIDKIAE-GADISKAAAGRALDAFIASVTESLQEGDAVALVGFGTFDVRERAART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + I + VP FRAGK LK+ +N
Sbjct: 60 GRNPQTGQEIDIPAAKVPGFRAGKALKDAVN 90
>gi|110681046|ref|YP_684053.1| integration host factor subunit beta [Roseobacter denitrificans
OCh 114]
gi|122972521|sp|Q161H6|IHFB_ROSDO RecName: Full=Integration host factor subunit beta;
Short=IHF-beta
gi|109457162|gb|ABG33367.1| integration host factor, beta subunit [Roseobacter denitrificans
OCh 114]
Length = 94
Score = 112 bits (282), Expect = 1e-23, Method: Composition-based stats.
Identities = 52/93 (55%), Positives = 68/93 (73%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
MI+S LI IA +NP L +DVE+IVN + EE+T A+A G RVE+RGFG+FSV+KR AR+
Sbjct: 1 MIRSELIQKIADENPHLYQRDVERIVNTIFEEVTGAMARGDRVELRGFGAFSVKKRDARI 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSP 93
R P + + VEEK VPFF+ GK L++RLN
Sbjct: 61 GRNPRTGETVHVEEKHVPFFKTGKLLRDRLNGK 93
>gi|71908179|ref|YP_285766.1| histone-like DNA-binding protein [Dechloromonas aromatica RCB]
gi|71847800|gb|AAZ47296.1| Histone-like bacterial DNA-binding protein [Dechloromonas
aromatica RCB]
Length = 126
Score = 112 bits (282), Expect = 1e-23, Method: Composition-based stats.
Identities = 39/90 (43%), Positives = 55/90 (61%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M +S LI +A++ P+L +D E V +L + AL +G RVEIRGFG F + R R
Sbjct: 1 MTRSELIALLAERFPQLVQKDAEMAVTEILGAIHAALVHGYRVEIRGFGVFDLNHRTPRQ 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
AR P + ++V K VP F+AGK L+ER+
Sbjct: 61 ARNPKTGEPVAVPAKWVPAFKAGKELRERV 90
>gi|170720566|ref|YP_001748254.1| integration host factor subunit beta [Pseudomonas putida W619]
gi|226709800|sp|B1J5H2|IHFB_PSEPW RecName: Full=Integration host factor subunit beta;
Short=IHF-beta
gi|169758569|gb|ACA71885.1| integration host factor, beta subunit [Pseudomonas putida W619]
Length = 98
Score = 112 bits (282), Expect = 1e-23, Method: Composition-based stats.
Identities = 42/94 (44%), Positives = 59/94 (62%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI I L+ +DVE + +LE+M+Q LA G R+EIRGFGSFS+ RA R+
Sbjct: 1 MTKSELIERIVTHQGLLSSKDVELAIKTMLEQMSQCLATGDRIEIRGFGSFSLHYRAPRV 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSPD 94
R P + + +E K VP F+ GK L++R+N +
Sbjct: 61 GRNPKTGQSVELEGKFVPHFKPGKELRDRVNEEE 94
>gi|299139694|ref|ZP_07032867.1| histone family protein DNA-binding protein [Acidobacterium sp.
MP5ACTX8]
gi|298598318|gb|EFI54483.1| histone family protein DNA-binding protein [Acidobacterium sp.
MP5ACTX8]
Length = 117
Score = 112 bits (282), Expect = 1e-23, Method: Composition-based stats.
Identities = 34/96 (35%), Positives = 54/96 (56%), Gaps = 1/96 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ L+ + L +D E IV+ L + + A+ +G +VE+RGFGSF R+R R
Sbjct: 1 MTKAELVDHVIA-LGDLTRRDGEVIVDTLFDSIIGAVKSGDKVEVRGFGSFRTRQRKPRT 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDST 96
R P +SV K VP+F+ K+L++ +N +S
Sbjct: 60 GRNPKTGASVSVPAKRVPYFKPSKDLRDLINPGESK 95
>gi|21231632|ref|NP_637549.1| integration host factor subunit beta [Xanthomonas campestris pv.
campestris str. ATCC 33913]
gi|66768246|ref|YP_243008.1| integration host factor subunit beta [Xanthomonas campestris pv.
campestris str. 8004]
gi|188991382|ref|YP_001903392.1| integration host factor subunit beta [Xanthomonas campestris pv.
campestris str. B100]
gi|24418454|sp|Q8P8P6|IHFB_XANCP RecName: Full=Integration host factor subunit beta;
Short=IHF-beta
gi|81305779|sp|Q4UVD5|IHFB_XANC8 RecName: Full=Integration host factor subunit beta;
Short=IHF-beta
gi|226709818|sp|B0RSA5|IHFB_XANCB RecName: Full=Integration host factor subunit beta;
Short=IHF-beta
gi|21113325|gb|AAM41473.1| integration host factor beta subunit [Xanthomonas campestris pv.
campestris str. ATCC 33913]
gi|66573578|gb|AAY48988.1| integration host factor beta subunit [Xanthomonas campestris pv.
campestris str. 8004]
gi|167733142|emb|CAP51340.1| Integration host factor beta subunit [Xanthomonas campestris pv.
campestris]
Length = 103
Score = 112 bits (282), Expect = 1e-23, Method: Composition-based stats.
Identities = 42/90 (46%), Positives = 57/90 (63%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI +A++ L DV+ V LLE M QAL++G R+EIRGFGSFS+ R RL
Sbjct: 1 MTKSELIEILARRQAHLKSDDVDLAVKSLLEMMGQALSDGDRIEIRGFGSFSLHYRPPRL 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P + +++ K VP F+ GK L+ER+
Sbjct: 61 GRNPKTGESVALPGKHVPHFKPGKELRERV 90
>gi|124267432|ref|YP_001021436.1| putative integration host factor subunit beta (ihf-beta) protein
[Methylibium petroleiphilum PM1]
gi|124260207|gb|ABM95201.1| putative integration host factor beta-subunit (ihf-beta) protein
[Methylibium petroleiphilum PM1]
Length = 111
Score = 112 bits (282), Expect = 1e-23, Method: Composition-based stats.
Identities = 37/97 (38%), Positives = 63/97 (64%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M +S L+ + ++ +L ++D E V +L+ M+ ALA G R+EIRGFGSFS+ +R R+
Sbjct: 1 MTRSDLVALLGERFSQLTHRDTEFAVKTILDAMSDALARGHRIEIRGFGSFSINRRPPRM 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDSTL 97
R P + + + + EK+VP F+ GK L+E +++ + L
Sbjct: 61 GRNPRSGEQVVIPEKLVPHFKPGKALREAVDAHTAAL 97
>gi|114766575|ref|ZP_01445531.1| integration host factor beta subunit [Pelagibaca bermudensis
HTCC2601]
gi|114541191|gb|EAU44243.1| integration host factor beta subunit [Roseovarius sp. HTCC2601]
Length = 93
Score = 112 bits (281), Expect = 1e-23, Method: Composition-based stats.
Identities = 53/93 (56%), Positives = 69/93 (74%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
MI+S LI IA++NP L +DVE+IVN + EE+T A+A G RVE+RGFG+FSV+KR ARL
Sbjct: 1 MIRSELIQKIAEENPHLYQRDVERIVNTIFEEITNAMARGDRVELRGFGAFSVKKRDARL 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSP 93
R P + + VEEK VPFF+ GK L++RLN
Sbjct: 61 GRNPRTGEAVEVEEKHVPFFKTGKLLRDRLNGK 93
>gi|187927876|ref|YP_001898363.1| integration host factor subunit beta [Ralstonia pickettii 12J]
gi|187724766|gb|ACD25931.1| integration host factor, beta subunit [Ralstonia pickettii 12J]
Length = 142
Score = 112 bits (281), Expect = 1e-23, Method: Composition-based stats.
Identities = 40/91 (43%), Positives = 61/91 (67%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS L+ +A + P+L +D + V +L+ M+ ALA+G R+EIRGFGSF + +R R+
Sbjct: 3 MTKSELVEKLAARFPQLLLRDADIAVKTILDAMSDALADGHRIEIRGFGSFGLNRRPPRV 62
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + + + V EK VP F+AGK L+ER++
Sbjct: 63 GRNPKSGEKVLVPEKRVPHFKAGKELRERVD 93
>gi|149916117|ref|ZP_01904639.1| integration host factor, beta subunit [Roseobacter sp. AzwK-3b]
gi|149809972|gb|EDM69821.1| integration host factor, beta subunit [Roseobacter sp. AzwK-3b]
Length = 94
Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats.
Identities = 50/93 (53%), Positives = 67/93 (72%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
MI+S LI IA++NP L +DVE+IVN + E+T A+A G RVE+RGFG+FSV++R AR
Sbjct: 1 MIRSELIQKIAEENPHLYQRDVERIVNTIFNEITNAMAEGNRVELRGFGAFSVKRRDART 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSP 93
R P + + VEEK VPFF+ GK L++RLN
Sbjct: 61 GRNPRTGEAVYVEEKHVPFFKTGKLLRDRLNGK 93
>gi|84500257|ref|ZP_00998523.1| integration host factor beta subunit [Oceanicola batsensis
HTCC2597]
gi|84392191|gb|EAQ04459.1| integration host factor beta subunit [Oceanicola batsensis
HTCC2597]
Length = 94
Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats.
Identities = 51/91 (56%), Positives = 68/91 (74%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
MI+S LI IA +NP L +DVEKIVN++ +E+ +A+A G RVE+RGFG+FSV+KR AR
Sbjct: 1 MIRSELIQKIADENPHLYQRDVEKIVNVIFDEIIEAMARGDRVELRGFGAFSVKKRDART 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + + VEEK VPFF+ GK L++RLN
Sbjct: 61 GRNPRTGEAVEVEEKHVPFFKTGKLLRDRLN 91
>gi|304392325|ref|ZP_07374266.1| integration host factor, beta subunit [Ahrensia sp. R2A130]
gi|303295429|gb|EFL89788.1| integration host factor, beta subunit [Ahrensia sp. R2A130]
Length = 93
Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats.
Identities = 52/93 (55%), Positives = 70/93 (75%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
MIKSSL+ TI+ NP L +DVE IVN +L+E+T+ALA G RVE+RGFG+FSV+ R R+
Sbjct: 1 MIKSSLVQTISDNNPHLYQRDVENIVNAILDEITEALARGDRVELRGFGAFSVKNRNPRV 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSP 93
R P + + VEEK VPFF+ GK+L++RLN+
Sbjct: 61 GRNPRTGERVEVEEKWVPFFKTGKDLRDRLNAD 93
>gi|118593738|ref|ZP_01551107.1| integration host factor subunit beta [Stappia aggregata IAM
12614]
gi|118433648|gb|EAV40311.1| integration host factor subunit beta [Stappia aggregata IAM
12614]
Length = 99
Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats.
Identities = 49/91 (53%), Positives = 67/91 (73%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
MIKS L+ IA++NP L +DVE IVN +L+E+T+AL G RVE+RGFG+FSV+ R AR+
Sbjct: 1 MIKSELVQHIAEQNPHLYQRDVENIVNAILDEVTEALMRGDRVELRGFGAFSVKNRPARV 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + + V+EK VPFF+ GK ++ RLN
Sbjct: 61 GRNPRTGQKVEVDEKFVPFFKTGKEMRIRLN 91
>gi|325915996|ref|ZP_08178289.1| integration host factor, beta subunit [Xanthomonas vesicatoria
ATCC 35937]
gi|325537806|gb|EGD09509.1| integration host factor, beta subunit [Xanthomonas vesicatoria
ATCC 35937]
Length = 103
Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats.
Identities = 42/90 (46%), Positives = 57/90 (63%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI +A++ L DV+ V LLE M QAL++G R+EIRGFGSFS+ R RL
Sbjct: 1 MTKSELIEILARRQAHLKSDDVDLAVKSLLEMMGQALSDGDRIEIRGFGSFSLHYRPPRL 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P + +++ K VP F+ GK L+ER+
Sbjct: 61 GRNPKTGESVALPGKHVPHFKPGKELRERV 90
>gi|85375322|ref|YP_459384.1| integration host factor beta-subunit [Erythrobacter litoralis
HTCC2594]
gi|84788405|gb|ABC64587.1| integration host factor beta-subunit [Erythrobacter litoralis
HTCC2594]
Length = 92
Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats.
Identities = 39/92 (42%), Positives = 63/92 (68%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
MI+S L+ +A+ NP L +++E++V++ +E+++ L GGRVE+RGFG+FS R+R AR
Sbjct: 1 MIRSELLQALARDNPDLRAEEIEQVVDIFFDEISRRLVEGGRVELRGFGAFSTREREARQ 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P + +SV K VP+F+ GK ++ LN
Sbjct: 61 GRNPRTGEPVSVPAKRVPYFKPGKEMRNALNE 92
>gi|330502875|ref|YP_004379744.1| integration host factor subunit beta [Pseudomonas mendocina
NK-01]
gi|328917161|gb|AEB57992.1| integration host factor subunit beta [Pseudomonas mendocina
NK-01]
Length = 94
Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats.
Identities = 42/94 (44%), Positives = 61/94 (64%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI I +L+ +DVE + +LE+M+QALA G R+EIRGFGSFS+ RA R+
Sbjct: 1 MTKSELIERIVTHQGQLSSKDVELAIKTMLEQMSQALATGDRIEIRGFGSFSLHYRAPRV 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSPD 94
R P + + ++ K VP F+ GK L++R+N +
Sbjct: 61 GRNPKTGQSVRLDGKFVPHFKPGKELRDRVNEDE 94
>gi|226943705|ref|YP_002798778.1| integration host factor subunit beta [Azotobacter vinelandii DJ]
gi|259492033|sp|C1DRR5|IHFB_AZOVD RecName: Full=Integration host factor subunit beta;
Short=IHF-beta
gi|226718632|gb|ACO77803.1| integration host factor, beta subunit [Azotobacter vinelandii DJ]
Length = 92
Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats.
Identities = 42/92 (45%), Positives = 61/92 (66%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI I + +L+ +DVE + +LE+M+QALA G R+EIRGFGSFS+ RA R+
Sbjct: 1 MTKSELIERIVTQQGQLSAKDVELAIKTMLEQMSQALATGDRIEIRGFGSFSLHYRAPRV 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P + + ++ K VP F+ GK L++R+N
Sbjct: 61 GRNPKTGQTVRLDGKFVPHFKPGKELRDRVNE 92
>gi|289665788|ref|ZP_06487369.1| integration host factor subunit beta [Xanthomonas campestris pv.
vasculorum NCPPB702]
Length = 103
Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats.
Identities = 42/90 (46%), Positives = 57/90 (63%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI +A++ L DV+ V LLE M QAL++G R+EIRGFGSFS+ R RL
Sbjct: 1 MTKSELIEILARRQAHLKSDDVDLAVKSLLEMMGQALSDGDRIEIRGFGSFSLHYRPPRL 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P + +++ K VP F+ GK L+ER+
Sbjct: 61 GRNPKTGESVALPGKHVPHFKPGKELRERV 90
>gi|86356056|ref|YP_467948.1| integration host factor subunit beta [Rhizobium etli CFN 42]
gi|116250186|ref|YP_766024.1| integration host factor subunit beta [Rhizobium leguminosarum bv.
viciae 3841]
gi|190890071|ref|YP_001976613.1| integration host factor beta-subunit protein [Rhizobium etli CIAT
652]
gi|209547655|ref|YP_002279572.1| integration host factor subunit beta [Rhizobium leguminosarum bv.
trifolii WSM2304]
gi|241202813|ref|YP_002973909.1| integration host factor subunit beta [Rhizobium leguminosarum bv.
trifolii WSM1325]
gi|123384964|sp|Q1MM94|IHFB_RHIL3 RecName: Full=Integration host factor subunit beta;
Short=IHF-beta
gi|123765870|sp|Q2KD65|IHFB_RHIEC RecName: Full=Integration host factor subunit beta;
Short=IHF-beta
gi|226709801|sp|B3PZE1|IHFB_RHIE6 RecName: Full=Integration host factor subunit beta;
Short=IHF-beta
gi|226709802|sp|B5ZN05|IHFB_RHILW RecName: Full=Integration host factor subunit beta;
Short=IHF-beta
gi|86280158|gb|ABC89221.1| integration host factor beta-subunit protein [Rhizobium etli CFN
42]
gi|115254834|emb|CAK05908.1| putative integration host factor beta subunit [Rhizobium
leguminosarum bv. viciae 3841]
gi|190695350|gb|ACE89435.1| integration host factor beta-subunit protein [Rhizobium etli CIAT
652]
gi|209533411|gb|ACI53346.1| integration host factor, beta subunit [Rhizobium leguminosarum
bv. trifolii WSM2304]
gi|240856703|gb|ACS54370.1| integration host factor, beta subunit [Rhizobium leguminosarum
bv. trifolii WSM1325]
Length = 99
Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats.
Identities = 51/91 (56%), Positives = 66/91 (72%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
MIKS L+ +A +NP L ++DVE IVN +L+E+T ALA G RVE+RGFG+FSV+ R +R
Sbjct: 1 MIKSELVQIVAARNPHLYHRDVENIVNAVLDEITDALAAGNRVELRGFGAFSVKNRPSRS 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + VEEK VPFF+ GK L+ERLN
Sbjct: 61 GRNPRTGDTVFVEEKWVPFFKTGKELRERLN 91
>gi|167644077|ref|YP_001681740.1| integration host factor subunit beta [Caulobacter sp. K31]
gi|226709785|sp|B0T273|IHFB_CAUSK RecName: Full=Integration host factor subunit beta;
Short=IHF-beta
gi|167346507|gb|ABZ69242.1| integration host factor, beta subunit [Caulobacter sp. K31]
Length = 94
Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats.
Identities = 48/94 (51%), Positives = 65/94 (69%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
MIKS LI +A +NP L +DVE++V ++LE M AL +GGRVE+RGFG+ SVR R AR
Sbjct: 1 MIKSELIARLANENPHLTQKDVERVVGVILERMIGALEDGGRVELRGFGALSVRSRPARA 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSPD 94
R P + + V K VPFF++GK L+ RLN+ +
Sbjct: 61 GRNPRTGETVDVRAKHVPFFKSGKELRGRLNADE 94
>gi|114328684|ref|YP_745841.1| integration host factor subunit beta [Granulibacter bethesdensis
CGDNIH1]
gi|122326362|sp|Q0BQI4|IHFB_GRABC RecName: Full=Integration host factor subunit beta;
Short=IHF-beta
gi|114316858|gb|ABI62918.1| integration host factor beta-subunit [Granulibacter bethesdensis
CGDNIH1]
Length = 107
Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats.
Identities = 46/96 (47%), Positives = 69/96 (71%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI ++ NP L +DVE IV+ + +E++ ALA G RVE+RGFG+F++++R AR+
Sbjct: 1 MTKSELIASLKADNPHLTERDVETIVSTIFDEISNALARGARVELRGFGAFTIKRRDARV 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDST 96
R P + +SV+EK+VPFF+AGK L+ER+N+
Sbjct: 61 GRNPRTGETVSVDEKVVPFFKAGKELRERVNNGTRK 96
>gi|94499400|ref|ZP_01305937.1| integration host factor, beta subunit [Oceanobacter sp. RED65]
gi|94428154|gb|EAT13127.1| integration host factor, beta subunit [Oceanobacter sp. RED65]
Length = 101
Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats.
Identities = 40/91 (43%), Positives = 62/91 (68%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI I +K+P+++ +D+E V +L+ M+QAL+ G R+EIRGFGSFS+ R R+
Sbjct: 1 MTKSELIERITEKHPEMSAKDIELAVKTILDTMSQALSQGERIEIRGFGSFSLHFRNPRV 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + + ++ K VP F+ GK L+E++N
Sbjct: 61 GRNPKTGEAVPLKGKYVPHFKPGKELREQVN 91
>gi|146279885|ref|YP_001170043.1| integration host factor subunit beta [Rhodobacter sphaeroides
ATCC 17025]
gi|145558126|gb|ABP72738.1| hypothetical protein Rsph17025_3883 [Rhodobacter sphaeroides ATCC
17025]
Length = 93
Score = 112 bits (280), Expect = 2e-23, Method: Composition-based stats.
Identities = 49/93 (52%), Positives = 67/93 (72%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
MI+S LI IA +NP L + VE+IVN + EE+ +ALA G RVE+RGFG+FSV+ R AR+
Sbjct: 1 MIRSELIQKIADENPHLTQRHVERIVNTVFEEIIEALARGDRVELRGFGAFSVKSRDARV 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSP 93
R P + + VE+K VPFF+ GK L++RLN+
Sbjct: 61 GRNPRTGEAVEVEDKKVPFFKTGKLLRDRLNAK 93
>gi|163856201|ref|YP_001630499.1| integration host factor beta-subunit [Bordetella petrii DSM
12804]
gi|226709770|sp|A9IJJ1|IHFB_BORPD RecName: Full=Integration host factor subunit beta;
Short=IHF-beta
gi|163259929|emb|CAP42230.1| integration host factor beta-subunit [Bordetella petrii]
Length = 119
Score = 112 bits (280), Expect = 2e-23, Method: Composition-based stats.
Identities = 43/91 (47%), Positives = 63/91 (69%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI +A + P+L +D + V +L+ MTQALA+G R+EIRGFGSFS+ +R+ R+
Sbjct: 1 MTKSELIAALAARYPQLAARDTDYAVKTMLDAMTQALASGQRIEIRGFGSFSLSQRSPRV 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + + + V K VP F+AGK L+ER++
Sbjct: 61 GRNPKSGEQVLVPGKQVPHFKAGKELRERVD 91
>gi|20560029|gb|AAM27778.1|AF498415_2 HimD [Pseudomonas aeruginosa]
Length = 93
Score = 112 bits (280), Expect = 2e-23, Method: Composition-based stats.
Identities = 42/92 (45%), Positives = 60/92 (65%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI I +L+ +DVE + +LE+M+QALA G R+EIRGFGSFS+ RA R+
Sbjct: 1 MTKSELIERIVTHQGQLSAKDVELAIKTMLEQMSQALATGDRIEIRGFGSFSLHYRAPRV 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P + + ++ K VP F+ GK L++R+N
Sbjct: 61 GRNPKTGESVRLDGKFVPHFKPGKELRDRVNE 92
>gi|23501064|ref|NP_697191.1| integration host factor subunit beta [Brucella suis 1330]
gi|148559718|ref|YP_001258186.1| integration host factor subunit beta [Brucella ovis ATCC 25840]
gi|153007510|ref|YP_001368725.1| integration host factor subunit beta [Ochrobactrum anthropi ATCC
49188]
gi|161618141|ref|YP_001592028.1| integration host factor subunit beta [Brucella canis ATCC 23365]
gi|163842423|ref|YP_001626827.1| integration host factor subunit beta [Brucella suis ATCC 23445]
gi|254700962|ref|ZP_05162790.1| integration host factor subunit beta [Brucella suis bv. 5 str.
513]
gi|254705332|ref|ZP_05167160.1| integration host factor subunit beta [Brucella suis bv. 3 str.
686]
gi|254707154|ref|ZP_05168982.1| integration host factor subunit beta [Brucella pinnipedialis
M163/99/10]
gi|254709302|ref|ZP_05171113.1| integration host factor subunit beta [Brucella pinnipedialis
B2/94]
gi|254713275|ref|ZP_05175086.1| integration host factor subunit beta [Brucella ceti M644/93/1]
gi|254716372|ref|ZP_05178183.1| integration host factor subunit beta [Brucella ceti M13/05/1]
gi|254718369|ref|ZP_05180180.1| integration host factor subunit beta [Brucella sp. 83/13]
gi|256030825|ref|ZP_05444439.1| integration host factor subunit beta [Brucella pinnipedialis
M292/94/1]
gi|256060295|ref|ZP_05450468.1| integration host factor subunit beta [Brucella neotomae 5K33]
gi|256158850|ref|ZP_05456707.1| integration host factor subunit beta [Brucella ceti M490/95/1]
gi|256254231|ref|ZP_05459767.1| integration host factor subunit beta [Brucella ceti B1/94]
gi|256368617|ref|YP_003106123.1| integration host factor beta subunit [Brucella microti CCM 4915]
gi|260169729|ref|ZP_05756540.1| integration host factor subunit beta [Brucella sp. F5/99]
gi|260567209|ref|ZP_05837679.1| integration host factor subunit beta [Brucella suis bv. 4 str.
40]
gi|261218154|ref|ZP_05932435.1| integration host factor subunit beta [Brucella ceti M13/05/1]
gi|261221380|ref|ZP_05935661.1| integration host factor subunit beta [Brucella ceti B1/94]
gi|261314632|ref|ZP_05953829.1| integration host factor subunit beta [Brucella pinnipedialis
M163/99/10]
gi|261316811|ref|ZP_05956008.1| integration host factor subunit beta [Brucella pinnipedialis
B2/94]
gi|261320998|ref|ZP_05960195.1| integration host factor subunit beta [Brucella ceti M644/93/1]
gi|261324267|ref|ZP_05963464.1| integration host factor subunit beta [Brucella neotomae 5K33]
gi|261751480|ref|ZP_05995189.1| integration host factor subunit beta [Brucella suis bv. 5 str.
513]
gi|261756043|ref|ZP_05999752.1| integration host factor subunit beta [Brucella suis bv. 3 str.
686]
gi|261759267|ref|ZP_06002976.1| integration host factor subunit beta [Brucella sp. F5/99]
gi|265983330|ref|ZP_06096065.1| integration host factor subunit beta [Brucella sp. 83/13]
gi|265987880|ref|ZP_06100437.1| integration host factor subunit beta [Brucella pinnipedialis
M292/94/1]
gi|265997341|ref|ZP_06109898.1| integration host factor subunit beta [Brucella ceti M490/95/1]
gi|306839600|ref|ZP_07472404.1| integration host factor, beta subunit [Brucella sp. NF 2653]
gi|306844421|ref|ZP_07477011.1| integration host factor, beta subunit [Brucella sp. BO1]
gi|38258168|sp|Q8G304|IHFB_BRUSU RecName: Full=Integration host factor subunit beta;
Short=IHF-beta
gi|166918542|sp|A5VN89|IHFB_BRUO2 RecName: Full=Integration host factor subunit beta;
Short=IHF-beta
gi|166918556|sp|A6WV92|IHFB_OCHA4 RecName: Full=Integration host factor subunit beta;
Short=IHF-beta
gi|189045033|sp|A9M798|IHFB_BRUC2 RecName: Full=Integration host factor subunit beta;
Short=IHF-beta
gi|189045034|sp|B0CIR1|IHFB_BRUSI RecName: Full=Integration host factor subunit beta;
Short=IHF-beta
gi|23346931|gb|AAN29106.1| integration host factor, beta subunit [Brucella suis 1330]
gi|148370975|gb|ABQ60954.1| integration host factor, beta subunit [Brucella ovis ATCC 25840]
gi|151559398|gb|ABS12896.1| integration host factor, beta subunit [Ochrobactrum anthropi ATCC
49188]
gi|161334952|gb|ABX61257.1| integration host factor, beta subunit [Brucella canis ATCC 23365]
gi|163673146|gb|ABY37257.1| integration host factor, beta subunit [Brucella suis ATCC 23445]
gi|255998775|gb|ACU47174.1| integration host factor beta subunit [Brucella microti CCM 4915]
gi|260156727|gb|EEW91807.1| integration host factor subunit beta [Brucella suis bv. 4 str.
40]
gi|260919964|gb|EEX86617.1| integration host factor subunit beta [Brucella ceti B1/94]
gi|260923243|gb|EEX89811.1| integration host factor subunit beta [Brucella ceti M13/05/1]
gi|261293688|gb|EEX97184.1| integration host factor subunit beta [Brucella ceti M644/93/1]
gi|261296034|gb|EEX99530.1| integration host factor subunit beta [Brucella pinnipedialis
B2/94]
gi|261300247|gb|EEY03744.1| integration host factor subunit beta [Brucella neotomae 5K33]
gi|261303658|gb|EEY07155.1| integration host factor subunit beta [Brucella pinnipedialis
M163/99/10]
gi|261739251|gb|EEY27247.1| integration host factor subunit beta [Brucella sp. F5/99]
gi|261741233|gb|EEY29159.1| integration host factor subunit beta [Brucella suis bv. 5 str.
513]
gi|261745796|gb|EEY33722.1| integration host factor subunit beta [Brucella suis bv. 3 str.
686]
gi|262551809|gb|EEZ07799.1| integration host factor subunit beta [Brucella ceti M490/95/1]
gi|264660077|gb|EEZ30338.1| integration host factor subunit beta [Brucella pinnipedialis
M292/94/1]
gi|264661922|gb|EEZ32183.1| integration host factor subunit beta [Brucella sp. 83/13]
gi|306275234|gb|EFM56984.1| integration host factor, beta subunit [Brucella sp. BO1]
gi|306405298|gb|EFM61573.1| integration host factor, beta subunit [Brucella sp. NF 2653]
Length = 94
Score = 112 bits (280), Expect = 2e-23, Method: Composition-based stats.
Identities = 50/91 (54%), Positives = 64/91 (70%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
MIKS L+ IA +NP L +DVE IV + +E+T ALA G RVE+RGFG+FSV+ R AR
Sbjct: 1 MIKSELVQIIASRNPHLFQRDVENIVGAVFDEITNALAEGNRVELRGFGAFSVKNRPARS 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + + VEEK VPFF+ GK L++RLN
Sbjct: 61 GRNPRTGETVDVEEKWVPFFKTGKELRDRLN 91
>gi|126727662|ref|ZP_01743494.1| integration host factor beta subunit [Rhodobacterales bacterium
HTCC2150]
gi|126703078|gb|EBA02179.1| integration host factor beta subunit [Rhodobacterales bacterium
HTCC2150]
Length = 94
Score = 112 bits (280), Expect = 2e-23, Method: Composition-based stats.
Identities = 50/93 (53%), Positives = 69/93 (74%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
MI+S L+ IA +NP+L +DVE+IVN L EE+ ALA+G RVE+RGFG+FSV++R AR+
Sbjct: 1 MIRSELVQKIADENPQLFQRDVERIVNTLFEEIINALADGDRVELRGFGAFSVKQRDARI 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSP 93
R P + + + VE K VPFF+ GK L++RLN
Sbjct: 61 GRNPRSGESVEVEAKNVPFFKTGKLLRDRLNGK 93
>gi|84623708|ref|YP_451080.1| integration host factor subunit beta [Xanthomonas oryzae pv.
oryzae MAFF 311018]
gi|166712377|ref|ZP_02243584.1| integration host factor subunit beta [Xanthomonas oryzae pv.
oryzicola BLS256]
gi|188576639|ref|YP_001913568.1| integration host factor subunit beta [Xanthomonas oryzae pv.
oryzae PXO99A]
gi|123739120|sp|Q2P3S1|IHFB_XANOM RecName: Full=Integration host factor subunit beta;
Short=IHF-beta
gi|226709819|sp|B2SLH4|IHFB_XANOP RecName: Full=Integration host factor subunit beta;
Short=IHF-beta
gi|84367648|dbj|BAE68806.1| integration host factor beta subunit [Xanthomonas oryzae pv.
oryzae MAFF 311018]
gi|188521091|gb|ACD59036.1| integration host factor, beta subunit [Xanthomonas oryzae pv.
oryzae PXO99A]
Length = 103
Score = 112 bits (280), Expect = 2e-23, Method: Composition-based stats.
Identities = 42/90 (46%), Positives = 57/90 (63%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI +A++ L DV+ V LLE M QAL++G R+EIRGFGSFS+ R RL
Sbjct: 1 MTKSELIEILARRQAHLKSDDVDLAVKSLLEMMGQALSDGDRIEIRGFGSFSLHYRPPRL 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P + +++ K VP F+ GK L+ER+
Sbjct: 61 GRNPKTGESVALPGKHVPHFKPGKELRERV 90
>gi|330808295|ref|YP_004352757.1| transcription factor, unclassified [Pseudomonas brassicacearum
subsp. brassicacearum NFM421]
gi|327376403|gb|AEA67753.1| putative Transcription factor, unclassified [Pseudomonas
brassicacearum subsp. brassicacearum NFM421]
Length = 98
Score = 112 bits (280), Expect = 2e-23, Method: Composition-based stats.
Identities = 42/95 (44%), Positives = 60/95 (63%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI I L+ +DVE + +LE+M+Q LA G R+EIRGFGSFS+ RA R+
Sbjct: 1 MTKSELIERIVTHQGLLSSKDVELAIKTMLEQMSQCLATGDRIEIRGFGSFSLHYRAPRV 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDS 95
R P + +S++ K VP F+ GK L++R+N +
Sbjct: 61 GRNPKTGQSVSLDGKFVPHFKPGKELRDRVNEEEG 95
>gi|307292730|ref|ZP_07572576.1| integration host factor, beta subunit [Sphingobium
chlorophenolicum L-1]
gi|306880796|gb|EFN12012.1| integration host factor, beta subunit [Sphingobium
chlorophenolicum L-1]
Length = 96
Score = 112 bits (280), Expect = 2e-23, Method: Composition-based stats.
Identities = 43/93 (46%), Positives = 65/93 (69%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
MI+S LI +A++N LN Q+VE+IV++ +E+ L+ GGRVE+RGFG+F+ R R AR
Sbjct: 1 MIRSELIQKLAEENQNLNLQEVERIVDLFFKEIVDRLSTGGRVELRGFGAFTTRARDART 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSP 93
R P + + V+ K VP+F+ GK ++ERLN+
Sbjct: 61 GRNPRTGEQVPVDAKRVPYFKPGKEMRERLNAK 93
>gi|91775279|ref|YP_545035.1| integration host factor, beta subunit [Methylobacillus
flagellatus KT]
gi|91775423|ref|YP_545179.1| integration host factor, beta subunit [Methylobacillus
flagellatus KT]
gi|91709266|gb|ABE49194.1| integration host factor, beta subunit [Methylobacillus
flagellatus KT]
gi|91709410|gb|ABE49338.1| integration host factor, beta subunit [Methylobacillus
flagellatus KT]
Length = 95
Score = 112 bits (280), Expect = 2e-23, Method: Composition-based stats.
Identities = 44/95 (46%), Positives = 61/95 (64%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI +A + P+L +D E V +L+ MT+ LA+G R+EIRGFGSFS+ R RL
Sbjct: 1 MTKSELIANLAARFPQLVVKDAELSVKTILDSMTENLASGERIEIRGFGSFSLNYRPPRL 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDS 95
R P + + V EK VP F+AGK L+ER++ +
Sbjct: 61 GRNPKTGEKVQVPEKHVPHFKAGKELRERVDGNSN 95
>gi|300023830|ref|YP_003756441.1| integration host factor subunit beta [Hyphomicrobium
denitrificans ATCC 51888]
gi|299525651|gb|ADJ24120.1| integration host factor, beta subunit [Hyphomicrobium
denitrificans ATCC 51888]
Length = 99
Score = 112 bits (280), Expect = 2e-23, Method: Composition-based stats.
Identities = 46/96 (47%), Positives = 68/96 (70%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
MIKS L+ IA NP L ++DVE+I+N++ +E+ AL+ G RVE+RGFG+F+V+ RA+R
Sbjct: 1 MIKSELVQKIATANPHLYHRDVERIINVIFDEIVDALSRGDRVELRGFGAFTVKHRASRQ 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDST 96
R P ++V EK VPFF+ GK L++RLN+ +
Sbjct: 61 GRNPRTGTTVAVAEKFVPFFKTGKELRDRLNTLNGQ 96
>gi|145588688|ref|YP_001155285.1| integration host factor, beta subunit [Polynucleobacter necessarius
subsp. asymbioticus QLW-P1DMWA-1]
gi|145047094|gb|ABP33721.1| integration host factor, beta subunit [Polynucleobacter necessarius
subsp. asymbioticus QLW-P1DMWA-1]
Length = 114
Score = 112 bits (280), Expect = 2e-23, Method: Composition-based stats.
Identities = 40/93 (43%), Positives = 61/93 (65%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
+ +S L+ ++A++ P+L +DVE V LL+ MTQALA G R+E+RG GSF + R AR
Sbjct: 9 ITRSELVESLAEQFPQLLPRDVELAVKTLLDTMTQALAEGKRIELRGVGSFVLHHRPART 68
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSP 93
R P + + + + EK VP F+ GK L+ER++
Sbjct: 69 GRNPKSGEKVLIPEKRVPHFKPGKELRERVDYK 101
>gi|56695706|ref|YP_166057.1| integration host factor subunit beta [Ruegeria pomeroyi DSS-3]
gi|81676380|sp|Q5LV98|IHFB_SILPO RecName: Full=Integration host factor subunit beta;
Short=IHF-beta
gi|56677443|gb|AAV94109.1| integration host factor, beta subunit [Ruegeria pomeroyi DSS-3]
Length = 94
Score = 112 bits (280), Expect = 2e-23, Method: Composition-based stats.
Identities = 52/93 (55%), Positives = 67/93 (72%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
MI+S LI IA +NP L +DVE+IVN + EE+T A+A G RVE+RGFG+FSV+KR AR+
Sbjct: 1 MIRSELIQKIADENPHLYQRDVERIVNTVFEEVTDAMARGDRVELRGFGAFSVKKRDARI 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSP 93
R P + VEEK VPFF+ GK L++RLN
Sbjct: 61 GRNPRTGDTVHVEEKHVPFFKTGKLLRDRLNGK 93
>gi|260220853|emb|CBA28834.1| Integration host factor subunit beta [Curvibacter putative
symbiont of Hydra magnipapillata]
Length = 103
Score = 112 bits (280), Expect = 2e-23, Method: Composition-based stats.
Identities = 37/99 (37%), Positives = 62/99 (62%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M +S L+ +A + +L ++D E V +L+ M AL G R+EIRGFGSFS+ +R R+
Sbjct: 1 MTRSDLVEELANRFSQLTHRDAEFAVKAILDAMNDALVRGHRIEIRGFGSFSINRRPPRM 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDSTLSN 99
R P + + +++ EK VP F+ GK L+E +++ + L +
Sbjct: 61 GRNPRSGESVAIPEKRVPHFKPGKALREAVDTRTAELES 99
>gi|167563627|ref|ZP_02356543.1| integration host factor subunit beta [Burkholderia oklahomensis
EO147]
gi|167570789|ref|ZP_02363663.1| integration host factor subunit beta [Burkholderia oklahomensis
C6786]
Length = 107
Score = 112 bits (280), Expect = 2e-23, Method: Composition-based stats.
Identities = 39/91 (42%), Positives = 60/91 (65%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS L+ +A + P+L +D + V +L+ M+ AL+ G R+EIRGFGSF + +R AR+
Sbjct: 1 MTKSELVAQLASRFPQLVLKDADFAVKTMLDAMSDALSKGHRIEIRGFGSFGLNRRPARV 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + + + V EK VP F+ GK L+ER++
Sbjct: 61 GRNPKSGEKVQVPEKYVPHFKPGKELRERVD 91
>gi|163747513|ref|ZP_02154863.1| integration host factor subunit beta [Oceanibulbus indolifex
HEL-45]
gi|161379191|gb|EDQ03610.1| integration host factor subunit beta [Oceanibulbus indolifex
HEL-45]
Length = 94
Score = 112 bits (280), Expect = 2e-23, Method: Composition-based stats.
Identities = 49/93 (52%), Positives = 68/93 (73%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
MI+S LI IA NP L +DVE+IVN + +E+T A++ G RVE+RGFG+FSV+KR AR+
Sbjct: 1 MIRSELIQKIADDNPHLYQRDVERIVNTVFDEITGAMSRGDRVELRGFGAFSVKKRDARV 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSP 93
R P + ++V+EK VPFF+ GK L++RLN
Sbjct: 61 GRNPRTGETVNVDEKHVPFFKTGKLLRDRLNGK 93
>gi|119897364|ref|YP_932577.1| integration host factor subunit beta [Azoarcus sp. BH72]
gi|166918539|sp|A1K4D5|IHFB_AZOSB RecName: Full=Integration host factor subunit beta;
Short=IHF-beta
gi|119669777|emb|CAL93690.1| probable integration host factor, beta-subunit [Azoarcus sp.
BH72]
Length = 94
Score = 112 bits (280), Expect = 2e-23, Method: Composition-based stats.
Identities = 42/91 (46%), Positives = 61/91 (67%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI +A + P+L +D + V M+L+ M+ ALA G R+EIRGFGSF++ R R+
Sbjct: 1 MTKSELIAQLAARFPQLVAKDADYAVKMILDAMSDALARGDRIEIRGFGSFALNYRPPRV 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + + + V EK VP F+AGK L+ER++
Sbjct: 61 GRNPKSGEKVHVPEKYVPHFKAGKELRERVD 91
>gi|146337267|ref|YP_001202315.1| integration host factor subunit beta [Bradyrhizobium sp. ORS278]
gi|166918541|sp|A4YJI9|IHFB_BRASO RecName: Full=Integration host factor subunit beta;
Short=IHF-beta
gi|146190073|emb|CAL74065.1| Integration host factor beta-subunit (IHF-beta) [Bradyrhizobium
sp. ORS278]
Length = 105
Score = 111 bits (279), Expect = 2e-23, Method: Composition-based stats.
Identities = 49/94 (52%), Positives = 65/94 (69%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
MIKS L+ IA+ NP L +DVE IVN +L+E+ ALA G RVE+RGFG+FSV+ R AR
Sbjct: 1 MIKSELVQRIAEHNPHLYQRDVENIVNAILDEIVAALARGDRVELRGFGAFSVKHRPARA 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSPD 94
R P + V++K VPFF+ GK ++ERLN +
Sbjct: 61 GRNPRTGAHVPVDQKSVPFFKTGKEMRERLNRDN 94
>gi|190574009|ref|YP_001971854.1| integration host factor subunit beta [Stenotrophomonas
maltophilia K279a]
gi|194365425|ref|YP_002028035.1| integration host factor subunit beta [Stenotrophomonas
maltophilia R551-3]
gi|254523418|ref|ZP_05135473.1| integration host factor, beta subunit [Stenotrophomonas sp.
SKA14]
gi|226709815|sp|B4SSV3|IHFB_STRM5 RecName: Full=Integration host factor subunit beta;
Short=IHF-beta
gi|226709816|sp|B2FNP6|IHFB_STRMK RecName: Full=Integration host factor subunit beta;
Short=IHF-beta
gi|190011931|emb|CAQ45552.1| putative integration host factor beta-subunit [Stenotrophomonas
maltophilia K279a]
gi|194348229|gb|ACF51352.1| integration host factor, beta subunit [Stenotrophomonas
maltophilia R551-3]
gi|219721009|gb|EED39534.1| integration host factor, beta subunit [Stenotrophomonas sp.
SKA14]
Length = 101
Score = 111 bits (279), Expect = 2e-23, Method: Composition-based stats.
Identities = 40/90 (44%), Positives = 55/90 (61%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI +A++ L DV+ V LLE M +L+ G R+EIRGFGSFS+ R RL
Sbjct: 1 MTKSELIEILARRQAHLKADDVDLAVKSLLEMMGGSLSAGDRIEIRGFGSFSLHYRPPRL 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P + +++ K VP F+ GK L+ER+
Sbjct: 61 GRNPKTGESVALPGKHVPHFKPGKELRERV 90
>gi|77465590|ref|YP_355093.1| integration host factor subunit beta [Rhodobacter sphaeroides
2.4.1]
gi|14194882|sp|Q9X4E2|IHFB_RHOS4 RecName: Full=Integration host factor subunit beta;
Short=IHF-beta
gi|4761124|gb|AAD29258.1|AF107093_3 integration host factor beta-subunit [Rhodobacter sphaeroides]
gi|77390008|gb|ABA81192.1| Integration host factor beta-subunit [Rhodobacter sphaeroides
2.4.1]
Length = 93
Score = 111 bits (279), Expect = 2e-23, Method: Composition-based stats.
Identities = 49/93 (52%), Positives = 67/93 (72%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
MI+S LI IA +NP L + VE+IVN + EE+ +ALA G RVE+RGFG+FSV+ R AR+
Sbjct: 1 MIRSELIQKIADENPHLTQRHVERIVNTVFEEIIEALARGDRVELRGFGAFSVKARDARV 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSP 93
R P + + VE+K VPFF+ GK L++RLN+
Sbjct: 61 GRNPRTGEAVEVEDKKVPFFKTGKLLRDRLNAK 93
>gi|163793688|ref|ZP_02187662.1| Bacterial nucleoid DNA-binding protein [alpha proteobacterium
BAL199]
gi|159180799|gb|EDP65316.1| Bacterial nucleoid DNA-binding protein [alpha proteobacterium
BAL199]
Length = 92
Score = 111 bits (279), Expect = 3e-23, Method: Composition-based stats.
Identities = 45/91 (49%), Positives = 65/91 (71%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI +A+ NP L +DVE+IV+ + +E++ ALA G RVE+RGFG+FSV++R AR+
Sbjct: 1 MTKSELIARLAEANPHLFQRDVERIVSTIFDEISNALARGDRVELRGFGAFSVKQREARV 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + + V K VPFF+ GK L+++LN
Sbjct: 61 GRNPRTGEAVKVSSKFVPFFKTGKLLRDKLN 91
>gi|120553956|ref|YP_958307.1| integration host factor subunit beta [Marinobacter aquaeolei VT8]
gi|166918554|sp|A1TZF1|IHFB_MARAV RecName: Full=Integration host factor subunit beta;
Short=IHF-beta
gi|120323805|gb|ABM18120.1| integration host factor, beta subunit [Marinobacter aquaeolei
VT8]
Length = 98
Score = 111 bits (279), Expect = 3e-23, Method: Composition-based stats.
Identities = 43/96 (44%), Positives = 60/96 (62%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS L+ IA K +L+ +DVE V ++E M+Q+LA+G R+EIRGFGSFS+ RAAR
Sbjct: 1 MTKSELVELIASKQTQLSVKDVELAVKSIIEHMSQSLADGQRIEIRGFGSFSLHHRAART 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDST 96
R P + + K VP F+ GK L+E++N
Sbjct: 61 GRNPKTGDAVQLPAKFVPHFKPGKELREQVNDSMKK 96
>gi|330953536|gb|EGH53796.1| integration host factor subunit beta [Pseudomonas syringae Cit 7]
Length = 98
Score = 111 bits (279), Expect = 3e-23, Method: Composition-based stats.
Identities = 42/96 (43%), Positives = 60/96 (62%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI I L+ +DVE + +LE+M+Q LA G R+EIRGFGSFS+ RA R+
Sbjct: 1 MTKSELIERIVTHQGLLSSKDVELAIKTMLEQMSQCLATGDRIEIRGFGSFSLHYRAPRV 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDST 96
R P + +S++ K VP F+ GK L++R+N +
Sbjct: 61 GRNPKTGQSVSLDGKFVPHFKPGKELRDRVNEDEEE 96
>gi|71906916|ref|YP_284503.1| integration host factor, beta subunit [Dechloromonas aromatica
RCB]
gi|123733294|sp|Q47GJ8|IHFB_DECAR RecName: Full=Integration host factor subunit beta;
Short=IHF-beta
gi|71846537|gb|AAZ46033.1| Integration host factor, beta subunit [Dechloromonas aromatica
RCB]
Length = 94
Score = 111 bits (279), Expect = 3e-23, Method: Composition-based stats.
Identities = 41/92 (44%), Positives = 62/92 (67%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI +A++ P+L +D + V M+L+ M++AL G R+EIRGFGSF++ R R+
Sbjct: 1 MTKSELIAQLAERFPQLVAKDADFAVKMILDAMSEALVRGDRIEIRGFGSFALNYRPPRV 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P + + +SV K VP F+AGK L+ER++
Sbjct: 61 GRNPKSGEKVSVPAKWVPHFKAGKELRERVDQ 92
>gi|300722537|ref|YP_003711827.1| integration host factor (IHF) subunit beta [Xenorhabdus
nematophila ATCC 19061]
gi|297629044|emb|CBJ89629.1| integration host factor (IHF), beta subunit, site-specific
recombination [Xenorhabdus nematophila ATCC 19061]
Length = 96
Score = 111 bits (279), Expect = 3e-23, Method: Composition-based stats.
Identities = 38/91 (41%), Positives = 56/91 (61%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI +A++ + + VE V +L+ M + LA G R+E+RGFGSFS+ RA R+
Sbjct: 1 MTKSELIERLAEQQSHMPAKAVEDAVKEMLDHMAETLAAGERIEVRGFGSFSLHYRAPRV 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + +E K VP F+ GK L++R+N
Sbjct: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRVN 91
>gi|119386494|ref|YP_917549.1| integration host factor subunit beta [Paracoccus denitrificans
PD1222]
gi|166918557|sp|A1B8K9|IHFB_PARDP RecName: Full=Integration host factor subunit beta;
Short=IHF-beta
gi|119377089|gb|ABL71853.1| integration host factor, beta subunit [Paracoccus denitrificans
PD1222]
Length = 95
Score = 111 bits (279), Expect = 3e-23, Method: Composition-based stats.
Identities = 52/95 (54%), Positives = 69/95 (72%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
MI+S LI I+++NP L +DVE+IVN + EE+ A+A G RVE+RGFG+FSV+KR AR
Sbjct: 1 MIRSELIQKISEENPHLFQRDVERIVNTVFEEIIDAMARGDRVELRGFGAFSVKKRDARQ 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDS 95
R P + +SV+EK VPFF+ GK L+ERLN D
Sbjct: 61 GRNPRTGETVSVDEKHVPFFKTGKLLRERLNGLDE 95
>gi|167841225|ref|ZP_02467909.1| integration host factor subunit beta [Burkholderia thailandensis
MSMB43]
Length = 107
Score = 111 bits (279), Expect = 3e-23, Method: Composition-based stats.
Identities = 39/91 (42%), Positives = 60/91 (65%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS L+ +A + P+L +D + V +L+ M+ AL+ G R+EIRGFGSF + +R AR+
Sbjct: 1 MTKSELVAQLASRFPQLVLKDADFAVKTMLDAMSDALSKGHRIEIRGFGSFGLNRRPARV 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + + + V EK VP F+ GK L+ER++
Sbjct: 61 GRNPKSGEKVQVPEKRVPHFKPGKELRERVD 91
>gi|304320496|ref|YP_003854139.1| integration host factor beta chain [Parvularcula bermudensis
HTCC2503]
gi|303299398|gb|ADM08997.1| integration host factor beta chain [Parvularcula bermudensis
HTCC2503]
Length = 113
Score = 111 bits (279), Expect = 3e-23, Method: Composition-based stats.
Identities = 47/95 (49%), Positives = 65/95 (68%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
MIKS L+ +A +NP L +DVEK+V+ + + ++ AL G RVE+RGFG+FSV+ R AR
Sbjct: 1 MIKSELVQQLAAENPHLFMKDVEKLVSAIFDHISTALEQGDRVELRGFGTFSVKYREART 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDS 95
R P + + VEEK VPFF+AGK ++ERLN
Sbjct: 61 GRNPRTGESVEVEEKWVPFFKAGKEMRERLNKKTD 95
>gi|107022126|ref|YP_620453.1| integration host factor subunit beta [Burkholderia cenocepacia AU
1054]
gi|116689071|ref|YP_834694.1| integration host factor subunit beta [Burkholderia cenocepacia
HI2424]
gi|170732359|ref|YP_001764306.1| integration host factor subunit beta [Burkholderia cenocepacia
MC0-3]
gi|123072317|sp|Q1BY25|IHFB_BURCA RecName: Full=Integration host factor subunit beta;
Short=IHF-beta
gi|226709773|sp|B1JXS2|IHFB_BURCC RecName: Full=Integration host factor subunit beta;
Short=IHF-beta
gi|226709774|sp|A0K5M4|IHFB_BURCH RecName: Full=Integration host factor subunit beta;
Short=IHF-beta
gi|105892315|gb|ABF75480.1| integration host factor, beta subunit [Burkholderia cenocepacia
AU 1054]
gi|116647160|gb|ABK07801.1| integration host factor, beta subunit [Burkholderia cenocepacia
HI2424]
gi|169815601|gb|ACA90184.1| integration host factor, beta subunit [Burkholderia cenocepacia
MC0-3]
Length = 107
Score = 111 bits (279), Expect = 3e-23, Method: Composition-based stats.
Identities = 40/91 (43%), Positives = 60/91 (65%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS L+ +A + P+L +D + V +L+ M+ ALA G R+EIRGFGSF + +R AR+
Sbjct: 1 MTKSELVAQLASRFPQLVLKDADFAVKTMLDAMSDALAKGHRIEIRGFGSFGLNRRPARV 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + + + V EK VP F+ GK L+ER++
Sbjct: 61 GRNPKSGEKVQVPEKFVPHFKPGKELRERVD 91
>gi|114798899|ref|YP_758925.1| integration host factor subunit beta [Hyphomonas neptunium ATCC
15444]
gi|114739073|gb|ABI77198.1| integration host factor, beta subunit [Hyphomonas neptunium ATCC
15444]
Length = 99
Score = 111 bits (279), Expect = 3e-23, Method: Composition-based stats.
Identities = 48/95 (50%), Positives = 65/95 (68%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M+KS LI +A +N L ++DVEK+VN++L E+ AL G RVE+RGFG+FSVRKR AR
Sbjct: 1 MLKSQLIEKLAAENAHLRHEDVEKVVNVILGEIGDALTRGDRVELRGFGAFSVRKRDARK 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDS 95
R P + + V K VPFF+AGK L+ R+N +
Sbjct: 61 GRNPRTGEPVKVPAKAVPFFKAGKELRARVNGGND 95
>gi|77460281|ref|YP_349788.1| integration host factor subunit beta [Pseudomonas fluorescens
Pf0-1]
gi|123603757|sp|Q3K8V7|IHFB_PSEPF RecName: Full=Integration host factor subunit beta;
Short=IHF-beta
gi|77384284|gb|ABA75797.1| integration host factor beta-subunit [Pseudomonas fluorescens
Pf0-1]
Length = 98
Score = 111 bits (279), Expect = 3e-23, Method: Composition-based stats.
Identities = 42/95 (44%), Positives = 60/95 (63%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI I L+ +DVE + +LE+M+Q LA G R+EIRGFGSFS+ RA R+
Sbjct: 1 MTKSELIERIVTHQGLLSSKDVELAIKTMLEQMSQCLATGDRIEIRGFGSFSLHYRAPRV 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDS 95
R P + +S++ K VP F+ GK L++R+N +
Sbjct: 61 GRNPKTGQSVSLDGKFVPHFKPGKELRDRVNEEEE 95
>gi|15839028|ref|NP_299716.1| integration host factor subunit beta [Xylella fastidiosa 9a5c]
gi|9107628|gb|AAF85236.1|AE004052_11 integration host factor, beta subunit [Xylella fastidiosa 9a5c]
Length = 126
Score = 111 bits (279), Expect = 3e-23, Method: Composition-based stats.
Identities = 40/90 (44%), Positives = 53/90 (58%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI + K+ L DV+ V LLE M AL+ G R+EIRGFGSFS+ R R
Sbjct: 23 MTKSELIEILTKRQAHLKSDDVDLAVKSLLEMMGGALSEGDRIEIRGFGSFSLHYRPPRC 82
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P + +++ K VP F+ GK L+ER+
Sbjct: 83 GRNPKTGESVALPGKYVPHFKPGKELRERV 112
>gi|229589172|ref|YP_002871291.1| integration host factor subunit beta [Pseudomonas fluorescens
SBW25]
gi|259492037|sp|C3K6K2|IHFB_PSEFS RecName: Full=Integration host factor subunit beta;
Short=IHF-beta
gi|229361038|emb|CAY47900.1| integration host factor beta-subunit [Pseudomonas fluorescens
SBW25]
gi|330960539|gb|EGH60799.1| integration host factor subunit beta [Pseudomonas syringae pv.
maculicola str. ES4326]
Length = 98
Score = 111 bits (278), Expect = 3e-23, Method: Composition-based stats.
Identities = 42/96 (43%), Positives = 60/96 (62%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI I L+ +DVE + +LE+M+Q LA G R+EIRGFGSFS+ RA R+
Sbjct: 1 MTKSELIERIVTHQGLLSSKDVELAIKTMLEQMSQCLATGDRIEIRGFGSFSLHYRAPRV 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDST 96
R P + +S++ K VP F+ GK L++R+N +
Sbjct: 61 GRNPKTGQSVSLDGKFVPHFKPGKELRDRVNEDEEE 96
>gi|197284610|ref|YP_002150482.1| integration host factor subunit beta [Proteus mirabilis HI4320]
gi|227356793|ref|ZP_03841178.1| integration host factor beta-subunit [Proteus mirabilis ATCC
29906]
gi|226709798|sp|B4ET28|IHFB_PROMH RecName: Full=Integration host factor subunit beta;
Short=IHF-beta
gi|194682097|emb|CAR41673.1| integration host factor beta-subunit [Proteus mirabilis HI4320]
gi|227163083|gb|EEI48018.1| integration host factor beta-subunit [Proteus mirabilis ATCC
29906]
Length = 95
Score = 111 bits (278), Expect = 3e-23, Method: Composition-based stats.
Identities = 39/91 (42%), Positives = 55/91 (60%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI +A L+ + VE+ V +L+ M LA+G R+E+RGFGSFS+ RA R
Sbjct: 1 MTKSELIERLAGLQSHLSAKTVEEAVKEMLDHMADTLADGERIEVRGFGSFSLHYRAPRT 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + +E K VP F+ GK L++R+N
Sbjct: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRVN 91
>gi|315126549|ref|YP_004068552.1| integration host factor (IHF), beta subunit, site-specific
recombination [Pseudoalteromonas sp. SM9913]
gi|315015063|gb|ADT68401.1| integration host factor (IHF), beta subunit, site-specific
recombination [Pseudoalteromonas sp. SM9913]
Length = 95
Score = 111 bits (278), Expect = 3e-23, Method: Composition-based stats.
Identities = 39/92 (42%), Positives = 60/92 (65%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI T+A+++ + +DVE V +LE+M +L++ R+EIRGFGSFS+ RA R
Sbjct: 1 MTKSELIETLAEQHSHIPVKDVENAVKEILEQMAGSLSSSDRIEIRGFGSFSLHYRAPRT 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P + + ++ K VP F+ GK L++R+N
Sbjct: 61 GRNPKTGETVELDGKHVPHFKPGKELRDRVNE 92
>gi|254466998|ref|ZP_05080409.1| integration host factor, beta subunit [Rhodobacterales bacterium
Y4I]
gi|206687906|gb|EDZ48388.1| integration host factor, beta subunit [Rhodobacterales bacterium
Y4I]
Length = 94
Score = 111 bits (278), Expect = 3e-23, Method: Composition-based stats.
Identities = 51/93 (54%), Positives = 68/93 (73%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
MI+S LI IA +NP L +DVE+IVN + EE+T A+A G RVE+RGFG+FSV+KR +R+
Sbjct: 1 MIRSELIQKIADENPHLYQRDVERIVNTVFEEVTNAMARGDRVELRGFGAFSVKKRDSRV 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSP 93
R P + + VEEK VPFF+ GK L++RLN
Sbjct: 61 GRNPRTGETVHVEEKHVPFFKTGKLLRDRLNGK 93
>gi|148549147|ref|YP_001269249.1| integration host factor subunit beta [Pseudomonas putida F1]
gi|167032377|ref|YP_001667608.1| integration host factor subunit beta [Pseudomonas putida GB-1]
gi|325276947|ref|ZP_08142631.1| integration host factor subunit beta [Pseudomonas sp. TJI-51]
gi|166975882|sp|A5W7F5|IHFB_PSEP1 RecName: Full=Integration host factor subunit beta;
Short=IHF-beta
gi|189045040|sp|B0KTY3|IHFB_PSEPG RecName: Full=Integration host factor subunit beta;
Short=IHF-beta
gi|148513205|gb|ABQ80065.1| integration host factor, beta subunit [Pseudomonas putida F1]
gi|166858865|gb|ABY97272.1| integration host factor, beta subunit [Pseudomonas putida GB-1]
gi|324097922|gb|EGB96084.1| integration host factor subunit beta [Pseudomonas sp. TJI-51]
Length = 98
Score = 111 bits (278), Expect = 3e-23, Method: Composition-based stats.
Identities = 44/98 (44%), Positives = 61/98 (62%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI I L+ +DVE + +LE+M+Q LA G R+EIRGFGSFS+ RA R+
Sbjct: 1 MTKSELIERIVTHQGLLSSKDVELAIKTMLEQMSQCLATGDRIEIRGFGSFSLHYRAPRV 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDSTLS 98
R P + +S+E K VP F+ GK L++R+N D +
Sbjct: 61 GRNPKTGQSVSLEGKFVPHFKPGKELRDRVNEEDEAEA 98
>gi|289671205|ref|ZP_06492280.1| integration host factor subunit beta [Xanthomonas campestris pv.
musacearum NCPPB4381]
Length = 103
Score = 111 bits (278), Expect = 3e-23, Method: Composition-based stats.
Identities = 41/90 (45%), Positives = 56/90 (62%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI +A++ L DV+ V LLE M QAL++G +EIRGFGSFS+ R RL
Sbjct: 1 MTKSELIEILARRQAHLKSDDVDLAVKSLLEMMGQALSDGDWIEIRGFGSFSLHYRPPRL 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P + +++ K VP F+ GK L+ER+
Sbjct: 61 GRNPKTGESVALPGKHVPHFKPGKELRERV 90
>gi|88798959|ref|ZP_01114540.1| integration host factor beta subunit [Reinekea sp. MED297]
gi|88778186|gb|EAR09380.1| integration host factor beta subunit [Reinekea sp. MED297]
Length = 101
Score = 111 bits (278), Expect = 3e-23, Method: Composition-based stats.
Identities = 40/91 (43%), Positives = 57/91 (62%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
KS LI I + +L+ +DVE + +L+ M QALA G R+EIRGFGSFS+ R+ R+
Sbjct: 7 TKSELIERIVDRQGQLSVRDVELAIKTMLDHMAQALAEGERIEIRGFGSFSLHYRSPRVG 66
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P + + +E K VP F+ GK L+E +N
Sbjct: 67 RNPKTGESVELEGKYVPHFKPGKELRESVNE 97
>gi|28868957|ref|NP_791576.1| integration host factor subunit beta [Pseudomonas syringae pv.
tomato str. DC3000]
gi|66046870|ref|YP_236711.1| integration host factor subunit beta [Pseudomonas syringae pv.
syringae B728a]
gi|213968715|ref|ZP_03396857.1| integration host factor subunit beta [Pseudomonas syringae pv.
tomato T1]
gi|237799024|ref|ZP_04587485.1| integration host factor subunit beta [Pseudomonas syringae pv.
oryzae str. 1_6]
gi|257485841|ref|ZP_05639882.1| integration host factor subunit beta [Pseudomonas syringae pv.
tabaci ATCC 11528]
gi|289623737|ref|ZP_06456691.1| integration host factor subunit beta [Pseudomonas syringae pv.
aesculi str. NCPPB3681]
gi|289648179|ref|ZP_06479522.1| integration host factor subunit beta [Pseudomonas syringae pv.
aesculi str. 2250]
gi|289677166|ref|ZP_06498056.1| integration host factor subunit beta [Pseudomonas syringae pv.
syringae FF5]
gi|298488022|ref|ZP_07006059.1| Integration host factor beta subunit [Pseudomonas savastanoi pv.
savastanoi NCPPB 3335]
gi|301381330|ref|ZP_07229748.1| integration host factor subunit beta [Pseudomonas syringae pv.
tomato Max13]
gi|302061500|ref|ZP_07253041.1| integration host factor subunit beta [Pseudomonas syringae pv.
tomato K40]
gi|302130033|ref|ZP_07256023.1| integration host factor subunit beta [Pseudomonas syringae pv.
tomato NCPPB 1108]
gi|302187671|ref|ZP_07264344.1| integration host factor subunit beta [Pseudomonas syringae pv.
syringae 642]
gi|38372325|sp|Q885T0|IHFB_PSESM RecName: Full=Integration host factor subunit beta;
Short=IHF-beta
gi|81308021|sp|Q4ZQ99|IHFB_PSEU2 RecName: Full=Integration host factor subunit beta;
Short=IHF-beta
gi|28852197|gb|AAO55271.1| integration host factor, beta subunit [Pseudomonas syringae pv.
tomato str. DC3000]
gi|63257577|gb|AAY38673.1| Integration host factor, beta subunit [Pseudomonas syringae pv.
syringae B728a]
gi|213926648|gb|EEB60201.1| integration host factor subunit beta [Pseudomonas syringae pv.
tomato T1]
gi|298157301|gb|EFH98384.1| Integration host factor beta subunit [Pseudomonas savastanoi pv.
savastanoi NCPPB 3335]
gi|320323346|gb|EFW79434.1| integration host factor subunit beta [Pseudomonas syringae pv.
glycinea str. B076]
gi|320327543|gb|EFW83555.1| integration host factor subunit beta [Pseudomonas syringae pv.
glycinea str. race 4]
gi|330866104|gb|EGH00813.1| integration host factor subunit beta [Pseudomonas syringae pv.
aesculi str. 0893_23]
gi|330876622|gb|EGH10771.1| integration host factor subunit beta [Pseudomonas syringae pv.
glycinea str. race 4]
gi|330877035|gb|EGH11184.1| integration host factor subunit beta [Pseudomonas syringae pv.
morsprunorum str. M302280PT]
gi|330889340|gb|EGH22001.1| integration host factor subunit beta [Pseudomonas syringae pv.
mori str. 301020]
gi|330897210|gb|EGH28629.1| integration host factor subunit beta [Pseudomonas syringae pv.
japonica str. M301072PT]
gi|330939638|gb|EGH42944.1| integration host factor subunit beta [Pseudomonas syringae pv.
pisi str. 1704B]
gi|330964803|gb|EGH65063.1| integration host factor subunit beta [Pseudomonas syringae pv.
actinidiae str. M302091]
gi|330972339|gb|EGH72405.1| integration host factor subunit beta [Pseudomonas syringae pv.
aceris str. M302273PT]
gi|330980288|gb|EGH78423.1| integration host factor subunit beta [Pseudomonas syringae pv.
aptata str. DSM 50252]
gi|330986660|gb|EGH84763.1| integration host factor subunit beta [Pseudomonas syringae pv.
lachrymans str. M301315]
gi|331012930|gb|EGH92986.1| integration host factor subunit beta [Pseudomonas syringae pv.
tabaci ATCC 11528]
gi|331016847|gb|EGH96903.1| integration host factor subunit beta [Pseudomonas syringae pv.
lachrymans str. M302278PT]
gi|331021878|gb|EGI01935.1| integration host factor subunit beta [Pseudomonas syringae pv.
oryzae str. 1_6]
Length = 98
Score = 111 bits (278), Expect = 3e-23, Method: Composition-based stats.
Identities = 42/96 (43%), Positives = 60/96 (62%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI I L+ +DVE + +LE+M+Q LA G R+EIRGFGSFS+ RA R+
Sbjct: 1 MTKSELIERIVTHQGLLSSKDVELAIKTMLEQMSQCLATGDRIEIRGFGSFSLHYRAPRV 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDST 96
R P + +S++ K VP F+ GK L++R+N +
Sbjct: 61 GRNPKTGQSVSLDGKFVPHFKPGKELRDRVNEDEEE 96
>gi|126464029|ref|YP_001045142.1| integration host factor subunit beta [Rhodobacter sphaeroides
ATCC 17029]
gi|221369597|ref|YP_002520693.1| integration host factor subunit beta [Rhodobacter sphaeroides
KD131]
gi|332561262|ref|ZP_08415580.1| integration host factor subunit beta [Rhodobacter sphaeroides
WS8N]
gi|166975885|sp|A3PPV4|IHFB_RHOS1 RecName: Full=Integration host factor subunit beta;
Short=IHF-beta
gi|254803538|sp|B9KU92|IHFB_RHOSK RecName: Full=Integration host factor subunit beta;
Short=IHF-beta
gi|126105840|gb|ABN78370.1| integration host factor, beta subunit [Rhodobacter sphaeroides
ATCC 17029]
gi|221162649|gb|ACM03620.1| Integration host factor subunit beta [Rhodobacter sphaeroides
KD131]
gi|332275060|gb|EGJ20376.1| integration host factor subunit beta [Rhodobacter sphaeroides
WS8N]
Length = 93
Score = 111 bits (278), Expect = 3e-23, Method: Composition-based stats.
Identities = 49/93 (52%), Positives = 67/93 (72%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
MI+S LI IA +NP L + VE+IVN + EE+ +ALA G RVE+RGFG+FSV+ R AR+
Sbjct: 1 MIRSELIQKIADENPHLTQRHVERIVNTVFEEIIEALARGDRVELRGFGAFSVKARDARV 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSP 93
R P + + VE+K VPFF+ GK L++RLN+
Sbjct: 61 GRNPRTGEAVEVEDKKVPFFKTGKLLRDRLNTK 93
>gi|226330705|ref|ZP_03806223.1| hypothetical protein PROPEN_04625 [Proteus penneri ATCC 35198]
gi|225201500|gb|EEG83854.1| hypothetical protein PROPEN_04625 [Proteus penneri ATCC 35198]
Length = 95
Score = 111 bits (278), Expect = 3e-23, Method: Composition-based stats.
Identities = 39/91 (42%), Positives = 55/91 (60%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI +A L+ + VE+ V +L+ M LA+G R+E+RGFGSFS+ RA R
Sbjct: 1 MTKSELIERLAGLQSHLSAKTVEEAVKEMLDHMADTLADGERIEVRGFGSFSLHYRAPRT 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + +E K VP F+ GK L++R+N
Sbjct: 61 GRNPKTGDKVDLEGKYVPHFKPGKELRDRVN 91
>gi|150395249|ref|YP_001325716.1| integration host factor subunit beta [Sinorhizobium medicae
WSM419]
gi|166975894|sp|A6U5F1|IHFB_SINMW RecName: Full=Integration host factor subunit beta;
Short=IHF-beta
gi|150026764|gb|ABR58881.1| integration host factor, beta subunit [Sinorhizobium medicae
WSM419]
Length = 103
Score = 111 bits (278), Expect = 3e-23, Method: Composition-based stats.
Identities = 51/91 (56%), Positives = 66/91 (72%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
MIKS L+ +A +NP L ++DVE IVN +L+E+T ALA G RVE+RGFG+FSV+ R +R
Sbjct: 1 MIKSELVQIVAARNPHLYHRDVENIVNAVLDEITDALAAGNRVELRGFGAFSVKNRPSRS 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + VEEK VPFF+ GK L+ERLN
Sbjct: 61 GRNPRTGDSVFVEEKWVPFFKTGKELRERLN 91
>gi|312959706|ref|ZP_07774223.1| Integration host factor subunit beta [Pseudomonas fluorescens
WH6]
gi|311286423|gb|EFQ64987.1| Integration host factor subunit beta [Pseudomonas fluorescens
WH6]
Length = 97
Score = 111 bits (278), Expect = 3e-23, Method: Composition-based stats.
Identities = 42/97 (43%), Positives = 61/97 (62%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI I L+ +DVE + +LE+M+Q LA G R+EIRGFGSFS+ RA R+
Sbjct: 1 MTKSELIERIVTHQGLLSSKDVELAIKTMLEQMSQCLATGDRIEIRGFGSFSLHYRAPRV 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDSTL 97
R P + +S++ K VP F+ GK L++R+N + +
Sbjct: 61 GRNPKTGQSVSLDGKFVPHFKPGKELRDRVNEDEDEV 97
>gi|83720765|ref|YP_442176.1| integration host factor subunit beta [Burkholderia thailandensis
E264]
gi|167581054|ref|ZP_02373928.1| integration host factor subunit beta [Burkholderia thailandensis
TXDOH]
gi|167619132|ref|ZP_02387763.1| integration host factor subunit beta [Burkholderia thailandensis
Bt4]
gi|257138365|ref|ZP_05586627.1| integration host factor subunit beta [Burkholderia thailandensis
E264]
gi|123767673|sp|Q2SY23|IHFB_BURTA RecName: Full=Integration host factor subunit beta;
Short=IHF-beta
gi|83654590|gb|ABC38653.1| integration host factor, beta subunit [Burkholderia thailandensis
E264]
Length = 107
Score = 111 bits (278), Expect = 3e-23, Method: Composition-based stats.
Identities = 39/91 (42%), Positives = 60/91 (65%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS L+ +A + P+L +D + V +L+ M+ AL+ G R+EIRGFGSF + +R AR+
Sbjct: 1 MTKSELVAQLASRFPQLVLKDADFAVKTMLDAMSDALSKGHRIEIRGFGSFGLNRRPARV 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + + + V EK VP F+ GK L+ER++
Sbjct: 61 GRNPKSGEKVQVPEKHVPHFKPGKELRERVD 91
>gi|170730702|ref|YP_001776135.1| integration host factor subunit beta [Xylella fastidiosa M12]
gi|167965495|gb|ACA12505.1| integration host factor, beta subunit [Xylella fastidiosa M12]
Length = 111
Score = 111 bits (278), Expect = 3e-23, Method: Composition-based stats.
Identities = 40/90 (44%), Positives = 53/90 (58%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI + K+ L DV+ V LLE M AL+ G R+EIRGFGSFS+ R R
Sbjct: 8 MTKSELIEILTKRQAHLKSDDVDLAVKSLLEMMGGALSEGDRIEIRGFGSFSLHYRPPRC 67
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P + +++ K VP F+ GK L+ER+
Sbjct: 68 GRNPKTGESVALPGKYVPHFKPGKELRERV 97
>gi|300312982|ref|YP_003777074.1| integration host factor subunit beta [Herbaspirillum seropedicae
SmR1]
gi|300075767|gb|ADJ65166.1| integration host factor beta-subunit (IHF-beta) protein
[Herbaspirillum seropedicae SmR1]
Length = 101
Score = 111 bits (278), Expect = 4e-23, Method: Composition-based stats.
Identities = 40/92 (43%), Positives = 60/92 (65%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI +A++ P+L +D + V +L+ M ALA G R+EIRGFGSF++ +R R+
Sbjct: 1 MTKSELIARLAERYPQLVAKDADYAVKTILDAMVDALATGQRIEIRGFGSFALNRRPPRI 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P + + V EK VP F+ GK L+ER+++
Sbjct: 61 GRNPKSGDKVMVPEKRVPHFKPGKELRERVDA 92
>gi|149185138|ref|ZP_01863455.1| integration host factor beta-subunit [Erythrobacter sp. SD-21]
gi|148831249|gb|EDL49683.1| integration host factor beta-subunit [Erythrobacter sp. SD-21]
Length = 94
Score = 111 bits (278), Expect = 4e-23, Method: Composition-based stats.
Identities = 44/93 (47%), Positives = 64/93 (68%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
MI+S L+ IA+ N L ++VE++V++ EE++Q L GGRVE+RGFG+FS R+R AR
Sbjct: 2 MIRSELLTAIAEDNSDLRAEEVEQVVDIFFEEISQRLTEGGRVELRGFGAFSTRERQARQ 61
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSP 93
R P +V+ V K VP+F+ GK ++ERLN
Sbjct: 62 GRNPRTGEVVDVPAKKVPYFKPGKEIRERLNEN 94
>gi|218710036|ref|YP_002417657.1| integration host factor subunit beta [Vibrio splendidus LGP32]
gi|254803543|sp|B7VH32|IHFB_VIBSL RecName: Full=Integration host factor subunit beta;
Short=IHF-beta
gi|218323055|emb|CAV19232.1| Integration host factor beta-subunit (IHF-beta) [Vibrio
splendidus LGP32]
Length = 94
Score = 111 bits (278), Expect = 4e-23, Method: Composition-based stats.
Identities = 39/92 (42%), Positives = 55/92 (59%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI + + L+ +++E V +LE M L +G R+EIRGFGSFS+ R R+
Sbjct: 1 MTKSELIERLCAEQTHLSAKEIEDAVKDILEHMASTLESGDRIEIRGFGSFSLHYREPRV 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P + +E K VP F+ GK L+ER+NS
Sbjct: 61 GRNPKTGDKVELEGKYVPHFKPGKELRERVNS 92
>gi|254488430|ref|ZP_05101635.1| integration host factor, beta subunit [Roseobacter sp. GAI101]
gi|214045299|gb|EEB85937.1| integration host factor, beta subunit [Roseobacter sp. GAI101]
Length = 94
Score = 111 bits (278), Expect = 4e-23, Method: Composition-based stats.
Identities = 50/93 (53%), Positives = 67/93 (72%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
MI+S LI IA NP L +DVE+IVN + EE+T A++ G RVE+RGFG+FSV+KR +R+
Sbjct: 1 MIRSELIQKIADDNPHLYQRDVERIVNTIFEEITSAMSAGDRVELRGFGAFSVKKRDSRV 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSP 93
R P + + VEEK VPFF+ GK L++RLN
Sbjct: 61 GRNPRTGETVHVEEKHVPFFKTGKLLRDRLNGN 93
>gi|182679839|ref|YP_001833985.1| integration host factor, beta subunit [Beijerinckia indica subsp.
indica ATCC 9039]
gi|226709769|sp|B2IKV6|IHFB_BEII9 RecName: Full=Integration host factor subunit beta;
Short=IHF-beta
gi|182635722|gb|ACB96496.1| integration host factor, beta subunit [Beijerinckia indica subsp.
indica ATCC 9039]
Length = 97
Score = 111 bits (278), Expect = 4e-23, Method: Composition-based stats.
Identities = 53/92 (57%), Positives = 69/92 (75%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
MIKS L+ IA +NP L +DVEKIVN +L+E+T+AL+ G RVE+RGFG+FSV++R ARL
Sbjct: 1 MIKSELVQRIADRNPHLYLRDVEKIVNAILDEITRALSRGDRVELRGFGAFSVKRRDARL 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P + VEEK VPFF+ GK ++ERLN
Sbjct: 61 GRNPRTGAHVPVEEKSVPFFKTGKEMRERLNE 92
>gi|74316975|ref|YP_314715.1| integration host factor subunit beta [Thiobacillus denitrificans
ATCC 25259]
gi|74056470|gb|AAZ96910.1| integration host factor, beta subunit [Thiobacillus denitrificans
ATCC 25259]
Length = 94
Score = 111 bits (278), Expect = 4e-23, Method: Composition-based stats.
Identities = 38/91 (41%), Positives = 59/91 (64%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI +A ++ + + D+E V +L+ + + L+ G R+EIRGFGSFS+ R ARL
Sbjct: 1 MTKSELIAQLAGRHSQFSIADIEMAVKTILDALAKNLSRGERIEIRGFGSFSLSFRPARL 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + + + V K VP F+AGK L++R++
Sbjct: 61 GRNPKSGERVQVPAKYVPHFKAGKELRDRVD 91
>gi|58581804|ref|YP_200820.1| integration host factor subunit beta [Xanthomonas oryzae pv. oryzae
KACC10331]
gi|58426398|gb|AAW75435.1| integration host factor beta subunit [Xanthomonas oryzae pv. oryzae
KACC10331]
Length = 119
Score = 111 bits (278), Expect = 4e-23, Method: Composition-based stats.
Identities = 42/90 (46%), Positives = 57/90 (63%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI +A++ L DV+ V LLE M QAL++G R+EIRGFGSFS+ R RL
Sbjct: 17 MTKSELIEILARRQAHLKSDDVDLAVKSLLEMMGQALSDGDRIEIRGFGSFSLHYRPPRL 76
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P + +++ K VP F+ GK L+ER+
Sbjct: 77 GRNPKTGESVALPGKHVPHFKPGKELRERV 106
>gi|294084820|ref|YP_003551580.1| integration host factor subunit beta [Candidatus Puniceispirillum
marinum IMCC1322]
gi|292664395|gb|ADE39496.1| integration host factor, beta subunit [Candidatus
Puniceispirillum marinum IMCC1322]
Length = 92
Score = 111 bits (278), Expect = 4e-23, Method: Composition-based stats.
Identities = 46/91 (50%), Positives = 64/91 (70%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M +S LI +A KNP L ++D+E++V +L+E++ AL G RVE+RGFG+FSVR R AR+
Sbjct: 1 MTRSELIARMAAKNPALYHRDIERLVGTILDEISGALERGDRVELRGFGAFSVRHRKARI 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + V EK VPFF+ GK ++ERLN
Sbjct: 61 GRNPRTGTSVQVAEKKVPFFKMGKGMRERLN 91
>gi|28898803|ref|NP_798408.1| integration host factor subunit beta [Vibrio parahaemolyticus
RIMD 2210633]
gi|260880823|ref|ZP_05893178.1| integration host factor, beta subunit [Vibrio parahaemolyticus
AN-5034]
gi|33301263|sp|Q87N46|IHFB_VIBPA RecName: Full=Integration host factor subunit beta;
Short=IHF-beta
gi|28807022|dbj|BAC60292.1| integration host factor, beta subunit [Vibrio parahaemolyticus
RIMD 2210633]
gi|308093630|gb|EFO43325.1| integration host factor, beta subunit [Vibrio parahaemolyticus
AN-5034]
gi|328474638|gb|EGF45443.1| integration host factor subunit beta [Vibrio parahaemolyticus
10329]
Length = 93
Score = 111 bits (278), Expect = 4e-23, Method: Composition-based stats.
Identities = 39/91 (42%), Positives = 54/91 (59%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI + + L+ ++VE V +LE M L +G R+EIRGFGSFS+ R R+
Sbjct: 1 MTKSELIERLCAEQTHLSAKEVEDAVKDILEHMASTLESGDRIEIRGFGSFSLHYREPRV 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + +E K VP F+ GK L+ER+N
Sbjct: 61 GRNPKTGDKVELEGKYVPHFKPGKELRERVN 91
>gi|260574086|ref|ZP_05842091.1| integration host factor, beta subunit [Rhodobacter sp. SW2]
gi|259023552|gb|EEW26843.1| integration host factor, beta subunit [Rhodobacter sp. SW2]
Length = 93
Score = 111 bits (278), Expect = 4e-23, Method: Composition-based stats.
Identities = 50/93 (53%), Positives = 67/93 (72%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
MI+S LI IA +NP L + VE+IVN + EE+ +ALA G RVE+RGFG+FSV+ R AR+
Sbjct: 1 MIRSELIQKIADENPHLTQRHVERIVNTVFEEIIEALAKGDRVELRGFGAFSVKARDARV 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSP 93
R P + + VE+K VPFF+ GK L++RLNS
Sbjct: 61 GRNPRTGEAVEVEDKKVPFFKTGKLLRDRLNSK 93
>gi|77360369|ref|YP_339944.1| integration host factor (IHF), beta subunit, site-specific
recombination [Pseudoalteromonas haloplanktis TAC125]
gi|123589521|sp|Q3IL99|IHFB_PSEHT RecName: Full=Integration host factor subunit beta;
Short=IHF-beta
gi|76875280|emb|CAI86501.1| putative integration host factor (iHF), beta subunit,
site-specific recombination [Pseudoalteromonas
haloplanktis TAC125]
Length = 95
Score = 111 bits (277), Expect = 4e-23, Method: Composition-based stats.
Identities = 39/92 (42%), Positives = 60/92 (65%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI T+A+++ + +DVE V +LE+M +L++ R+EIRGFGSFS+ RA R
Sbjct: 1 MTKSELIETLAQQHAHVPVKDVENAVKEILEQMAGSLSSSDRIEIRGFGSFSLHYRAPRT 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P + + ++ K VP F+ GK L++R+N
Sbjct: 61 GRNPKTGETVELDGKHVPHFKPGKELRDRVNE 92
>gi|260776374|ref|ZP_05885269.1| integration host factor beta subunit [Vibrio coralliilyticus ATCC
BAA-450]
gi|260607597|gb|EEX33862.1| integration host factor beta subunit [Vibrio coralliilyticus ATCC
BAA-450]
Length = 93
Score = 111 bits (277), Expect = 4e-23, Method: Composition-based stats.
Identities = 38/91 (41%), Positives = 54/91 (59%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI + + L+ +++E V +LE M L G R+EIRGFGSFS+ R R+
Sbjct: 1 MTKSELIERLCAEQTHLSAKEIEDAVKDILEHMASTLETGDRIEIRGFGSFSLHYREPRV 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + + +E K VP F+ GK L+ER+N
Sbjct: 61 GRNPKTGEKVELEGKYVPHFKPGKELRERVN 91
>gi|78065633|ref|YP_368402.1| integration host factor subunit beta [Burkholderia sp. 383]
gi|206561284|ref|YP_002232049.1| integration host factor subunit beta [Burkholderia cenocepacia
J2315]
gi|123770067|sp|Q39IF8|IHFB_BURS3 RecName: Full=Integration host factor subunit beta;
Short=IHF-beta
gi|226709775|sp|B4EB39|IHFB_BURCJ RecName: Full=Integration host factor subunit beta;
Short=IHF-beta
gi|77966378|gb|ABB07758.1| Integration host factor, beta subunit [Burkholderia sp. 383]
gi|198037326|emb|CAR53251.1| integration host factor beta-subunit [Burkholderia cenocepacia
J2315]
gi|325520509|gb|EGC99605.1| integration host factor subunit beta [Burkholderia sp. TJI49]
Length = 107
Score = 111 bits (277), Expect = 4e-23, Method: Composition-based stats.
Identities = 40/91 (43%), Positives = 60/91 (65%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS L+ +A + P+L +D + V +L+ M+ ALA G R+EIRGFGSF + +R AR+
Sbjct: 1 MTKSELVAQLASRFPQLVLKDADFAVKTMLDAMSDALAKGHRIEIRGFGSFGLNRRPARV 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + + + V EK VP F+ GK L+ER++
Sbjct: 61 GRNPKSGEKVQVPEKFVPHFKPGKELRERVD 91
>gi|158425340|ref|YP_001526632.1| integration host factor subunit beta [Azorhizobium caulinodans
ORS 571]
gi|172048041|sp|A8IN83|IHFB_AZOC5 RecName: Full=Integration host factor subunit beta;
Short=IHF-beta
gi|158332229|dbj|BAF89714.1| integration host factor beta subunit [Azorhizobium caulinodans
ORS 571]
Length = 94
Score = 111 bits (277), Expect = 4e-23, Method: Composition-based stats.
Identities = 48/91 (52%), Positives = 65/91 (71%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
MIKS L+ IA+ NP L +DVE IVN +L+++ ALA G RVE+RGFG+FSV++R AR
Sbjct: 1 MIKSELVQKIAEANPHLYQRDVENIVNAILDQIVDALAQGDRVELRGFGAFSVKQREART 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P K + V K+VP+F+ GK ++ERLN
Sbjct: 61 GRNPRTGKQVDVSSKVVPYFKTGKEMRERLN 91
>gi|153833369|ref|ZP_01986036.1| integration host factor, beta subunit [Vibrio harveyi HY01]
gi|156975132|ref|YP_001446039.1| integration host factor subunit beta [Vibrio harveyi ATCC
BAA-1116]
gi|166975895|sp|A7MUP0|IHFB_VIBHB RecName: Full=Integration host factor subunit beta;
Short=IHF-beta
gi|148870378|gb|EDL69304.1| integration host factor, beta subunit [Vibrio harveyi HY01]
gi|156526726|gb|ABU71812.1| hypothetical protein VIBHAR_02859 [Vibrio harveyi ATCC BAA-1116]
Length = 94
Score = 111 bits (277), Expect = 4e-23, Method: Composition-based stats.
Identities = 39/91 (42%), Positives = 54/91 (59%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI + + L+ ++VE V +LE M L +G R+EIRGFGSFS+ R R+
Sbjct: 1 MTKSELIERLCAEQTHLSAKEVEDAVKDILEHMASTLESGDRIEIRGFGSFSLHYREPRV 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + +E K VP F+ GK L+ER+N
Sbjct: 61 GRNPKTGDKVELEGKYVPHFKPGKELRERVN 91
>gi|167586533|ref|ZP_02378921.1| integration host factor, beta subunit [Burkholderia ubonensis Bu]
Length = 107
Score = 111 bits (277), Expect = 4e-23, Method: Composition-based stats.
Identities = 39/91 (42%), Positives = 60/91 (65%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS L+ +A + P+L +D + V +L+ M+ AL+ G R+EIRGFGSF + +R AR+
Sbjct: 1 MTKSELVAQLASRFPQLVLKDADFAVKTMLDAMSDALSKGHRIEIRGFGSFGLNRRPARV 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + + + V EK VP F+ GK L+ER++
Sbjct: 61 GRNPKSGEKVQVPEKFVPHFKPGKELRERVD 91
>gi|310815217|ref|YP_003963181.1| integration host factor subunit beta [Ketogulonicigenium vulgare
Y25]
gi|308753952|gb|ADO41881.1| integration host factor subunit beta [Ketogulonicigenium vulgare
Y25]
Length = 93
Score = 111 bits (277), Expect = 4e-23, Method: Composition-based stats.
Identities = 50/93 (53%), Positives = 66/93 (70%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
MI+S LI IA +NP L ++DVE IVN + +E+T+ALA G RVE+RGFG+FSV+ R +R
Sbjct: 1 MIRSELIQKIADENPHLYHRDVENIVNTIFDEITEALAKGNRVELRGFGAFSVKHRDSRT 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSP 93
R P + VEEK VPFF+ GK L++RLN
Sbjct: 61 GRNPRTGDPVDVEEKSVPFFKTGKLLRDRLNGK 93
>gi|317051936|ref|YP_004113052.1| histone family protein DNA-binding protein [Desulfurispirillum
indicum S5]
gi|316947020|gb|ADU66496.1| histone family protein DNA-binding protein [Desulfurispirillum
indicum S5]
Length = 93
Score = 111 bits (277), Expect = 4e-23, Method: Composition-based stats.
Identities = 38/92 (41%), Positives = 55/92 (59%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ L+ I +K +N + E +VN L E + AL G +VE+RGFGSF R+R R
Sbjct: 1 MTKADLVERICEKTDSVNKKQAEAVVNGLFECIIDALEEGDKVELRGFGSFKTRERGPRE 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P +SV K VP+F+ GK L+ER+++
Sbjct: 61 GRNPKTGDKVSVPSKRVPYFKPGKELRERVDN 92
>gi|15964139|ref|NP_384492.1| integration host factor subunit beta [Sinorhizobium meliloti
1021]
gi|307301284|ref|ZP_07581046.1| integration host factor, beta subunit [Sinorhizobium meliloti
BL225C]
gi|307317955|ref|ZP_07597392.1| integration host factor, beta subunit [Sinorhizobium meliloti
AK83]
gi|21362611|sp|Q92SJ7|IHFB_RHIME RecName: Full=Integration host factor subunit beta;
Short=IHF-beta
gi|15073315|emb|CAC41823.1| Probable integration host factor beta-subunit [Sinorhizobium
meliloti 1021]
gi|306896357|gb|EFN27106.1| integration host factor, beta subunit [Sinorhizobium meliloti
AK83]
gi|306903740|gb|EFN34327.1| integration host factor, beta subunit [Sinorhizobium meliloti
BL225C]
Length = 103
Score = 111 bits (277), Expect = 4e-23, Method: Composition-based stats.
Identities = 52/99 (52%), Positives = 69/99 (69%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
MIKS L+ +A +NP L ++DVE IVN +L+E+T ALA G RVE+RGFG+FSV+ R +R
Sbjct: 1 MIKSELVQIVAARNPHLYHRDVENIVNAVLDEITDALAAGNRVELRGFGAFSVKNRPSRS 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDSTLSN 99
R P + VEEK VPFF+ GK L+ERLN + +N
Sbjct: 61 GRNPRTGDSVFVEEKWVPFFKTGKELRERLNPGMNDNNN 99
>gi|54309614|ref|YP_130634.1| putative integration host factor, beta subunit [Photobacterium
profundum SS9]
gi|81697345|sp|Q6LPE4|IHFB_PHOPR RecName: Full=Integration host factor subunit beta;
Short=IHF-beta
gi|46914052|emb|CAG20832.1| putative integration host factor, beta subunit [Photobacterium
profundum SS9]
Length = 96
Score = 111 bits (277), Expect = 4e-23, Method: Composition-based stats.
Identities = 38/92 (41%), Positives = 55/92 (59%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI + + L+ + VE + +LE M LA G R+EIRGFGSFS+ RA R+
Sbjct: 1 MTKSELIERLCSQQTHLSAKQVEDAIKEILEHMAGTLAEGDRIEIRGFGSFSLHYRAPRV 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P + ++ K VP F+ GK L++R+N+
Sbjct: 61 GRNPKTGDKVELDGKYVPHFKPGKELRDRVNA 92
>gi|330815898|ref|YP_004359603.1| Integration host factor, beta subunit [Burkholderia gladioli
BSR3]
gi|327368291|gb|AEA59647.1| Integration host factor, beta subunit [Burkholderia gladioli
BSR3]
Length = 106
Score = 111 bits (277), Expect = 4e-23, Method: Composition-based stats.
Identities = 39/91 (42%), Positives = 60/91 (65%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS L+ +A + P+L +D + V +L+ M+ AL+ G R+EIRGFGSF + +R AR+
Sbjct: 1 MTKSELVAQLATRFPQLVLKDADFAVKTMLDAMSDALSKGHRIEIRGFGSFGLNRRPARV 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + + + V EK VP F+ GK L+ER++
Sbjct: 61 GRNPKSGEKVQVPEKYVPHFKPGKELRERVD 91
>gi|134095741|ref|YP_001100816.1| integration host factor subunit beta [Herminiimonas
arsenicoxydans]
gi|152980763|ref|YP_001354357.1| integration host factor subunit beta [Janthinobacterium sp.
Marseille]
gi|166918551|sp|A4G858|IHFB_HERAR RecName: Full=Integration host factor subunit beta;
Short=IHF-beta
gi|166918552|sp|A6T1G0|IHFB_JANMA RecName: Full=Integration host factor subunit beta;
Short=IHF-beta
gi|133739644|emb|CAL62695.1| Integration host factor subunit beta (IHF-beta) [Herminiimonas
arsenicoxydans]
gi|151280840|gb|ABR89250.1| integration host factor beta-subunit [Janthinobacterium sp.
Marseille]
Length = 101
Score = 111 bits (277), Expect = 4e-23, Method: Composition-based stats.
Identities = 40/92 (43%), Positives = 60/92 (65%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI +A++ P+L +D + V +L+ M+ ALA G R+EIRGFGSF++ R R+
Sbjct: 1 MTKSELIARLAERYPQLVAKDADYAVKTILDAMSDALATGQRIEIRGFGSFALNSRPPRI 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P + + V EK VP F+ GK L+ER+++
Sbjct: 61 GRNPKSGDKVMVPEKRVPHFKPGKQLRERVDA 92
>gi|84515231|ref|ZP_01002593.1| integration host factor beta subunit [Loktanella vestfoldensis
SKA53]
gi|84510514|gb|EAQ06969.1| integration host factor beta subunit [Loktanella vestfoldensis
SKA53]
Length = 93
Score = 111 bits (277), Expect = 4e-23, Method: Composition-based stats.
Identities = 50/91 (54%), Positives = 66/91 (72%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
MI+S LI IA +NP L +DVEKIVN + + +T A+A G RVE+RGFG+FSV+KR RL
Sbjct: 1 MIRSELIQKIADENPHLYQRDVEKIVNTIFDRITDAMAQGNRVELRGFGAFSVKKRDPRL 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + + V+EK VPFF+ GK L++RLN
Sbjct: 61 GRNPRTGEAVEVDEKHVPFFKTGKLLRDRLN 91
>gi|126731019|ref|ZP_01746827.1| integration host factor beta subunit [Sagittula stellata E-37]
gi|126708321|gb|EBA07379.1| integration host factor beta subunit [Sagittula stellata E-37]
Length = 93
Score = 111 bits (277), Expect = 4e-23, Method: Composition-based stats.
Identities = 52/93 (55%), Positives = 67/93 (72%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
MI+S LI IA +NP L +DVE+IVN + EE+T A+A G RVE+RGFG+FSV+KR AR+
Sbjct: 1 MIRSELIQKIADENPHLYQRDVERIVNTIFEEITNAMARGDRVELRGFGAFSVKKRDARI 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSP 93
R P + VEEK VPFF+ GK L++RLN
Sbjct: 61 GRNPRTGDSVEVEEKHVPFFKTGKLLRDRLNGK 93
>gi|294624736|ref|ZP_06703402.1| integration host factor beta subunit [Xanthomonas fuscans subsp.
aurantifolii str. ICPB 11122]
gi|294664332|ref|ZP_06729697.1| integration host factor beta subunit [Xanthomonas fuscans subsp.
aurantifolii str. ICPB 10535]
gi|292600970|gb|EFF45041.1| integration host factor beta subunit [Xanthomonas fuscans subsp.
aurantifolii str. ICPB 11122]
gi|292605898|gb|EFF49184.1| integration host factor beta subunit [Xanthomonas fuscans subsp.
aurantifolii str. ICPB 10535]
Length = 113
Score = 111 bits (277), Expect = 5e-23, Method: Composition-based stats.
Identities = 42/90 (46%), Positives = 57/90 (63%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI +A++ L DV+ V LLE M QAL++G R+EIRGFGSFS+ R RL
Sbjct: 11 MTKSELIEILARRQAHLKSDDVDLAVKSLLEMMGQALSDGDRIEIRGFGSFSLHYRPPRL 70
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P + +++ K VP F+ GK L+ER+
Sbjct: 71 GRNPKTGESVALPGKHVPHFKPGKELRERV 100
>gi|108760828|ref|YP_631695.1| integration host factor subunit beta [Myxococcus xanthus DK 1622]
gi|27804850|gb|AAO22888.1| hypothetical protein [Myxococcus xanthus]
gi|108464708|gb|ABF89893.1| integration host factor, beta subunit [Myxococcus xanthus DK
1622]
Length = 127
Score = 111 bits (277), Expect = 5e-23, Method: Composition-based stats.
Identities = 42/99 (42%), Positives = 62/99 (62%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M +S LI I ++ + ++VE IV+ + EEM+QAL G R+E+RGFG F VR R AR
Sbjct: 1 MTRSELIERIVERATHVPRREVEAIVHAVFEEMSQALIAGRRIELRGFGVFCVRTRRART 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDSTLSN 99
R P + +SV + F AGK+L+ERLN+P + ++
Sbjct: 61 GRNPKTGQRVSVPARRTLSFAAGKDLRERLNAPPAMAAS 99
>gi|269139519|ref|YP_003296220.1| integration host factor, beta subunit [Edwardsiella tarda EIB202]
gi|267985180|gb|ACY85009.1| integration host factor, beta subunit [Edwardsiella tarda EIB202]
gi|304559408|gb|ADM42072.1| Integration host factor beta subunit [Edwardsiella tarda FL6-60]
Length = 94
Score = 111 bits (277), Expect = 5e-23, Method: Composition-based stats.
Identities = 42/91 (46%), Positives = 56/91 (61%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI +A + P L + VE V +LE M LA+G R+EIRGFGSFS+ RA R+
Sbjct: 1 MTKSELIERLASQQPHLPAKAVEDAVKEMLEHMAATLADGERIEIRGFGSFSLHYRAPRV 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + + +E K VP F+ GK L++R N
Sbjct: 61 GRNPKTGEKVELEGKYVPHFKPGKELRDRAN 91
>gi|300112900|ref|YP_003759475.1| integration host factor subunit beta [Nitrosococcus watsonii
C-113]
gi|299538837|gb|ADJ27154.1| integration host factor, beta subunit [Nitrosococcus watsonii
C-113]
Length = 96
Score = 111 bits (277), Expect = 5e-23, Method: Composition-based stats.
Identities = 45/91 (49%), Positives = 59/91 (64%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI +A++ L+Y+DVE V MLLE M+QALA G R+EIRGFGSFS+ R R
Sbjct: 1 MTKSGLIERLAQRQALLSYRDVELAVKMLLEVMSQALAQGERIEIRGFGSFSLHYRPPRS 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + + K VP F+ GK L+ER++
Sbjct: 61 GRNPKTGDTVPLSSKYVPHFKPGKELRERVD 91
>gi|238920344|ref|YP_002933859.1| integration host factor subunit beta [Edwardsiella ictaluri
93-146]
gi|294636909|ref|ZP_06715236.1| integration host factor, beta subunit [Edwardsiella tarda ATCC
23685]
gi|259492035|sp|C5BBR9|IHFB_EDWI9 RecName: Full=Integration host factor subunit beta;
Short=IHF-beta
gi|238869913|gb|ACR69624.1| integration host factor, beta subunit, putative [Edwardsiella
ictaluri 93-146]
gi|291089862|gb|EFE22423.1| integration host factor, beta subunit [Edwardsiella tarda ATCC
23685]
Length = 94
Score = 111 bits (277), Expect = 5e-23, Method: Composition-based stats.
Identities = 42/91 (46%), Positives = 56/91 (61%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI +A + P L + VE V +LE M LA+G R+EIRGFGSFS+ RA R+
Sbjct: 1 MTKSELIERLASQQPHLPAKAVEDAVKEMLEHMAATLADGERIEIRGFGSFSLHYRAPRI 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + + +E K VP F+ GK L++R N
Sbjct: 61 GRNPKTGEKVELEGKYVPHFKPGKELRDRAN 91
>gi|187924976|ref|YP_001896618.1| integration host factor subunit beta [Burkholderia phytofirmans
PsJN]
gi|226709783|sp|B2T634|IHFB_BURPP RecName: Full=Integration host factor subunit beta;
Short=IHF-beta
gi|187716170|gb|ACD17394.1| integration host factor, beta subunit [Burkholderia phytofirmans
PsJN]
Length = 107
Score = 111 bits (277), Expect = 5e-23, Method: Composition-based stats.
Identities = 40/91 (43%), Positives = 62/91 (68%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS L+ +A + P+L +D + V +L+ M++ALANG R+EIRGFGSF + +R +R+
Sbjct: 1 MTKSELVAQLAARFPQLVLKDADFAVKTMLDAMSEALANGHRIEIRGFGSFGLNRRPSRV 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + + + V EK VP F+ GK L+ER++
Sbjct: 61 GRNPKSGEKVLVPEKYVPHFKPGKELRERVD 91
>gi|296136321|ref|YP_003643563.1| histone family protein DNA-binding protein [Thiomonas intermedia
K12]
gi|294340557|emb|CAZ88942.1| Integration host factor subunit beta (IHF-beta) [Thiomonas sp.
3As]
gi|295796443|gb|ADG31233.1| histone family protein DNA-binding protein [Thiomonas intermedia
K12]
Length = 110
Score = 110 bits (276), Expect = 5e-23, Method: Composition-based stats.
Identities = 40/91 (43%), Positives = 62/91 (68%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M +S L+ +A + P+L ++D E V +L+ + QAL +G RVEIRGFGSFSV R+AR+
Sbjct: 1 MTRSDLVEILAAQFPQLTHRDAELSVKTILDALAQALDDGHRVEIRGFGSFSVSHRSARI 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + + ++V EK +P F+ GK L+E ++
Sbjct: 61 GRNPRSGEQVAVPEKRIPHFKPGKTLRELVD 91
>gi|53720124|ref|YP_109110.1| integration host factor subunit beta [Burkholderia pseudomallei
K96243]
gi|53724786|ref|YP_102240.1| integration host factor subunit beta [Burkholderia mallei ATCC
23344]
gi|76810828|ref|YP_334371.1| integration host factor subunit beta [Burkholderia pseudomallei
1710b]
gi|121598535|ref|YP_993873.1| integration host factor subunit beta [Burkholderia mallei SAVP1]
gi|124385018|ref|YP_001026936.1| integration host factor subunit beta [Burkholderia mallei NCTC
10229]
gi|126441395|ref|YP_001059900.1| integration host factor subunit beta [Burkholderia pseudomallei
668]
gi|126451382|ref|YP_001079777.1| integration host factor subunit beta [Burkholderia mallei NCTC
10247]
gi|126452191|ref|YP_001067189.1| integration host factor subunit beta [Burkholderia pseudomallei
1106a]
gi|134277133|ref|ZP_01763848.1| integration host factor, beta subunit [Burkholderia pseudomallei
305]
gi|166999733|ref|ZP_02265567.1| integration host factor, beta subunit [Burkholderia mallei
PRL-20]
gi|167720665|ref|ZP_02403901.1| integration host factor subunit beta [Burkholderia pseudomallei
DM98]
gi|167739652|ref|ZP_02412426.1| integration host factor subunit beta [Burkholderia pseudomallei
14]
gi|167816857|ref|ZP_02448537.1| integration host factor subunit beta [Burkholderia pseudomallei
91]
gi|167825257|ref|ZP_02456728.1| integration host factor subunit beta [Burkholderia pseudomallei
9]
gi|167846761|ref|ZP_02472269.1| integration host factor subunit beta [Burkholderia pseudomallei
B7210]
gi|167895349|ref|ZP_02482751.1| integration host factor subunit beta [Burkholderia pseudomallei
7894]
gi|167903735|ref|ZP_02490940.1| integration host factor subunit beta [Burkholderia pseudomallei
NCTC 13177]
gi|167911984|ref|ZP_02499075.1| integration host factor subunit beta [Burkholderia pseudomallei
112]
gi|167919975|ref|ZP_02507066.1| integration host factor subunit beta [Burkholderia pseudomallei
BCC215]
gi|217420526|ref|ZP_03452031.1| integration host factor, beta subunit [Burkholderia pseudomallei
576]
gi|237813294|ref|YP_002897745.1| integration host factor, beta subunit [Burkholderia pseudomallei
MSHR346]
gi|238561682|ref|ZP_00441665.2| integration host factor, beta subunit [Burkholderia mallei GB8
horse 4]
gi|242317605|ref|ZP_04816621.1| integration host factor, beta subunit [Burkholderia pseudomallei
1106b]
gi|254177019|ref|ZP_04883676.1| integration host factor, beta subunit [Burkholderia mallei ATCC
10399]
gi|254181090|ref|ZP_04887688.1| integration host factor, beta subunit [Burkholderia pseudomallei
1655]
gi|254191994|ref|ZP_04898494.1| integration host factor, beta subunit [Burkholderia pseudomallei
Pasteur 52237]
gi|254195591|ref|ZP_04902018.1| integration host factor, beta subunit [Burkholderia pseudomallei
S13]
gi|254203924|ref|ZP_04910284.1| integration host factor, beta subunit [Burkholderia mallei FMH]
gi|254208904|ref|ZP_04915252.1| integration host factor, beta subunit [Burkholderia mallei JHU]
gi|254258262|ref|ZP_04949316.1| integration host factor, beta subunit [Burkholderia pseudomallei
1710a]
gi|254360041|ref|ZP_04976311.1| integration host factor, beta subunit [Burkholderia mallei
2002721280]
gi|81685156|sp|Q62M28|IHFB_BURMA RecName: Full=Integration host factor subunit beta;
Short=IHF-beta
gi|81690265|sp|Q63S07|IHFB_BURPS RecName: Full=Integration host factor subunit beta;
Short=IHF-beta
gi|123598384|sp|Q3JPY2|IHFB_BURP1 RecName: Full=Integration host factor subunit beta;
Short=IHF-beta
gi|226709777|sp|A3MHP1|IHFB_BURM7 RecName: Full=Integration host factor subunit beta;
Short=IHF-beta
gi|226709778|sp|A2S4R7|IHFB_BURM9 RecName: Full=Integration host factor subunit beta;
Short=IHF-beta
gi|226709779|sp|A1V6M0|IHFB_BURMS RecName: Full=Integration host factor subunit beta;
Short=IHF-beta
gi|226709780|sp|A3NXW8|IHFB_BURP0 RecName: Full=Integration host factor subunit beta;
Short=IHF-beta
gi|226709781|sp|A3NC29|IHFB_BURP6 RecName: Full=Integration host factor subunit beta;
Short=IHF-beta
gi|52210538|emb|CAH36521.1| integration host factor beta-subunit [Burkholderia pseudomallei
K96243]
gi|52428209|gb|AAU48802.1| integration host factor, beta subunit [Burkholderia mallei ATCC
23344]
gi|76580281|gb|ABA49756.1| integration host factor, beta subunit [Burkholderia pseudomallei
1710b]
gi|121227345|gb|ABM49863.1| integration host factor, beta subunit [Burkholderia mallei SAVP1]
gi|124293038|gb|ABN02307.1| integration host factor, beta subunit [Burkholderia mallei NCTC
10229]
gi|126220888|gb|ABN84394.1| integration host factor, beta subunit [Burkholderia pseudomallei
668]
gi|126225833|gb|ABN89373.1| integration host factor, beta subunit [Burkholderia pseudomallei
1106a]
gi|126244252|gb|ABO07345.1| integration host factor, beta subunit [Burkholderia mallei NCTC
10247]
gi|134250783|gb|EBA50862.1| integration host factor, beta subunit [Burkholderia pseudomallei
305]
gi|147745436|gb|EDK52516.1| integration host factor, beta subunit [Burkholderia mallei FMH]
gi|147750780|gb|EDK57849.1| integration host factor, beta subunit [Burkholderia mallei JHU]
gi|148029281|gb|EDK87186.1| integration host factor, beta subunit [Burkholderia mallei
2002721280]
gi|157987816|gb|EDO95581.1| integration host factor, beta subunit [Burkholderia pseudomallei
Pasteur 52237]
gi|160698060|gb|EDP88030.1| integration host factor, beta subunit [Burkholderia mallei ATCC
10399]
gi|169652337|gb|EDS85030.1| integration host factor, beta subunit [Burkholderia pseudomallei
S13]
gi|184211629|gb|EDU08672.1| integration host factor, beta subunit [Burkholderia pseudomallei
1655]
gi|217395938|gb|EEC35955.1| integration host factor, beta subunit [Burkholderia pseudomallei
576]
gi|237504544|gb|ACQ96862.1| integration host factor, beta subunit [Burkholderia pseudomallei
MSHR346]
gi|238524131|gb|EEP87566.1| integration host factor, beta subunit [Burkholderia mallei GB8
horse 4]
gi|242140844|gb|EES27246.1| integration host factor, beta subunit [Burkholderia pseudomallei
1106b]
gi|243064226|gb|EES46412.1| integration host factor, beta subunit [Burkholderia mallei
PRL-20]
gi|254216951|gb|EET06335.1| integration host factor, beta subunit [Burkholderia pseudomallei
1710a]
Length = 107
Score = 110 bits (276), Expect = 5e-23, Method: Composition-based stats.
Identities = 39/91 (42%), Positives = 60/91 (65%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS L+ +A + P+L +D + V +L+ M+ AL+ G R+EIRGFGSF + +R AR+
Sbjct: 1 MTKSELVAQLASRFPQLVLKDADFAVKTMLDAMSDALSKGHRIEIRGFGSFGLNRRPARV 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + + + V EK VP F+ GK L+ER++
Sbjct: 61 GRNPKSGEKVQVPEKHVPHFKPGKELRERVD 91
>gi|225873248|ref|YP_002754707.1| DNA-binding protein HU 1 [Acidobacterium capsulatum ATCC 51196]
gi|225792876|gb|ACO32966.1| DNA-binding protein HU 1 [Acidobacterium capsulatum ATCC 51196]
Length = 107
Score = 110 bits (276), Expect = 6e-23, Method: Composition-based stats.
Identities = 34/91 (37%), Positives = 55/91 (60%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ L+ + K+ +L +D E IV+ + + + AL +G ++EIRGFGSF VR+R R+
Sbjct: 1 MTKADLVEEL-TKSGELTRRDGEVIVDTIFDSVIAALKSGDKIEIRGFGSFRVRQRNPRV 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + V K VP+F+ K L++ +N
Sbjct: 60 GRNPKTGAKVDVPAKKVPYFKPSKELRDLVN 90
>gi|297538803|ref|YP_003674572.1| integration host factor subunit beta [Methylotenera sp. 301]
gi|297258150|gb|ADI29995.1| integration host factor, beta subunit [Methylotenera sp. 301]
Length = 93
Score = 110 bits (276), Expect = 6e-23, Method: Composition-based stats.
Identities = 43/91 (47%), Positives = 58/91 (63%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI +A++ P+L +D E V +L+ M+ LA G R+EIRGFGSFS+ R RL
Sbjct: 1 MTKSELITLLAERFPQLVVKDAELSVKAILDAMSDNLATGERIEIRGFGSFSLNYRPPRL 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + V EK VP F+AGK L+ER++
Sbjct: 61 GRNPKTGSKVQVPEKHVPHFKAGKELRERVD 91
>gi|260428004|ref|ZP_05781983.1| integration host factor, beta subunit [Citreicella sp. SE45]
gi|260422496|gb|EEX15747.1| integration host factor, beta subunit [Citreicella sp. SE45]
Length = 93
Score = 110 bits (276), Expect = 6e-23, Method: Composition-based stats.
Identities = 52/93 (55%), Positives = 68/93 (73%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
MI+S LI IA++NP L +DVE+IVN + EE+T A+A G RVE+RGFG+FSV+KR AR+
Sbjct: 1 MIRSELIQKIAEENPHLYQRDVERIVNTIFEEITNAMARGDRVELRGFGAFSVKKRDARM 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSP 93
R P + VEEK VPFF+ GK L++RLN
Sbjct: 61 GRNPRTGDAVEVEEKHVPFFKTGKLLRDRLNGK 93
>gi|161525426|ref|YP_001580438.1| integration host factor subunit beta [Burkholderia multivorans
ATCC 17616]
gi|189349837|ref|YP_001945465.1| integration host factor subunit beta [Burkholderia multivorans
ATCC 17616]
gi|221201262|ref|ZP_03574302.1| integration host factor, beta subunit [Burkholderia multivorans
CGD2M]
gi|221206284|ref|ZP_03579297.1| integration host factor, beta subunit [Burkholderia multivorans
CGD2]
gi|221213565|ref|ZP_03586539.1| integration host factor, beta subunit [Burkholderia multivorans
CGD1]
gi|226709776|sp|A9ADV3|IHFB_BURM1 RecName: Full=Integration host factor subunit beta;
Short=IHF-beta
gi|160342855|gb|ABX15941.1| integration host factor, beta subunit [Burkholderia multivorans
ATCC 17616]
gi|189333859|dbj|BAG42929.1| integration host factor beta subunit [Burkholderia multivorans
ATCC 17616]
gi|221166354|gb|EED98826.1| integration host factor, beta subunit [Burkholderia multivorans
CGD1]
gi|221173593|gb|EEE06027.1| integration host factor, beta subunit [Burkholderia multivorans
CGD2]
gi|221179112|gb|EEE11519.1| integration host factor, beta subunit [Burkholderia multivorans
CGD2M]
Length = 107
Score = 110 bits (276), Expect = 6e-23, Method: Composition-based stats.
Identities = 39/91 (42%), Positives = 60/91 (65%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS L+ +A + P+L +D + V +L+ M+ AL+ G R+EIRGFGSF + +R AR+
Sbjct: 1 MTKSELVAQLASRFPQLVLKDADFAVKTMLDAMSDALSKGHRIEIRGFGSFGLNRRPARV 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + + + V EK VP F+ GK L+ER++
Sbjct: 61 GRNPKSGEKVQVPEKFVPHFKPGKELRERVD 91
>gi|115350978|ref|YP_772817.1| integration host factor subunit beta [Burkholderia ambifaria
AMMD]
gi|134295080|ref|YP_001118815.1| integration host factor subunit beta [Burkholderia vietnamiensis
G4]
gi|170698414|ref|ZP_02889487.1| integration host factor, beta subunit [Burkholderia ambifaria
IOP40-10]
gi|171316179|ref|ZP_02905403.1| integration host factor, beta subunit [Burkholderia ambifaria
MEX-5]
gi|172059983|ref|YP_001807635.1| integration host factor subunit beta [Burkholderia ambifaria
MC40-6]
gi|122323724|sp|Q0BH90|IHFB_BURCM RecName: Full=Integration host factor subunit beta;
Short=IHF-beta
gi|226709772|sp|B1YV36|IHFB_BURA4 RecName: Full=Integration host factor subunit beta;
Short=IHF-beta
gi|226709784|sp|A4JCH7|IHFB_BURVG RecName: Full=Integration host factor subunit beta;
Short=IHF-beta
gi|115280966|gb|ABI86483.1| integration host factor, beta subunit [Burkholderia ambifaria
AMMD]
gi|134138237|gb|ABO53980.1| integration host factor, beta subunit [Burkholderia vietnamiensis
G4]
gi|170136667|gb|EDT04922.1| integration host factor, beta subunit [Burkholderia ambifaria
IOP40-10]
gi|171098688|gb|EDT43483.1| integration host factor, beta subunit [Burkholderia ambifaria
MEX-5]
gi|171992500|gb|ACB63419.1| integration host factor, beta subunit [Burkholderia ambifaria
MC40-6]
Length = 107
Score = 110 bits (276), Expect = 6e-23, Method: Composition-based stats.
Identities = 39/91 (42%), Positives = 60/91 (65%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS L+ +A + P+L +D + V +L+ M+ AL+ G R+EIRGFGSF + +R AR+
Sbjct: 1 MTKSELVAQLALRFPQLVLKDADFAVKTMLDAMSDALSKGHRIEIRGFGSFGLNRRPARV 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + + + V EK VP F+ GK L+ER++
Sbjct: 61 GRNPKSGEKVQVPEKFVPHFKPGKELRERVD 91
>gi|62289129|ref|YP_220922.1| integration host factor subunit beta [Brucella abortus bv. 1 str.
9-941]
gi|82699068|ref|YP_413642.1| integration host factor subunit beta [Brucella melitensis biovar
Abortus 2308]
gi|189023405|ref|YP_001934173.1| integration host factor subunit beta [Brucella abortus S19]
gi|254690457|ref|ZP_05153711.1| integration host factor subunit beta [Brucella abortus bv. 6 str.
870]
gi|254694946|ref|ZP_05156774.1| integration host factor subunit beta [Brucella abortus bv. 3 str.
Tulya]
gi|254696577|ref|ZP_05158405.1| integration host factor subunit beta [Brucella abortus bv. 2 str.
86/8/59]
gi|254731490|ref|ZP_05190068.1| integration host factor subunit beta [Brucella abortus bv. 4 str.
292]
gi|256258713|ref|ZP_05464249.1| integration host factor subunit beta [Brucella abortus bv. 9 str.
C68]
gi|260546427|ref|ZP_05822167.1| integration host factor subunit beta [Brucella abortus NCTC 8038]
gi|260756009|ref|ZP_05868357.1| integration host factor subunit beta [Brucella abortus bv. 6 str.
870]
gi|260759233|ref|ZP_05871581.1| integration host factor subunit beta [Brucella abortus bv. 4 str.
292]
gi|260760955|ref|ZP_05873298.1| integration host factor subunit beta [Brucella abortus bv. 2 str.
86/8/59]
gi|260885029|ref|ZP_05896643.1| integration host factor subunit beta [Brucella abortus bv. 9 str.
C68]
gi|261215285|ref|ZP_05929566.1| integration host factor subunit beta [Brucella abortus bv. 3 str.
Tulya]
gi|297247545|ref|ZP_06931263.1| integration host factor, beta subunit [Brucella abortus bv. 5
str. B3196]
gi|75505361|sp|Q57FM3|IHFB_BRUAB RecName: Full=Integration host factor subunit beta;
Short=IHF-beta
gi|123768445|sp|Q2YP18|IHFB_BRUA2 RecName: Full=Integration host factor subunit beta;
Short=IHF-beta
gi|226709771|sp|B2S8E6|IHFB_BRUA1 RecName: Full=Integration host factor subunit beta;
Short=IHF-beta
gi|62195261|gb|AAX73561.1| IhfB, integration host factor, beta subunit [Brucella abortus bv.
1 str. 9-941]
gi|82615169|emb|CAJ10108.1| Histone-like bacterial DNA-binding protein:Integration host
factor, beta subunit [Brucella melitensis biovar
Abortus 2308]
gi|189018977|gb|ACD71699.1| Histone-like bacterial DNA-binding protein [Brucella abortus S19]
gi|260096534|gb|EEW80410.1| integration host factor subunit beta [Brucella abortus NCTC 8038]
gi|260669551|gb|EEX56491.1| integration host factor subunit beta [Brucella abortus bv. 4 str.
292]
gi|260671387|gb|EEX58208.1| integration host factor subunit beta [Brucella abortus bv. 2 str.
86/8/59]
gi|260676117|gb|EEX62938.1| integration host factor subunit beta [Brucella abortus bv. 6 str.
870]
gi|260874557|gb|EEX81626.1| integration host factor subunit beta [Brucella abortus bv. 9 str.
C68]
gi|260916892|gb|EEX83753.1| integration host factor subunit beta [Brucella abortus bv. 3 str.
Tulya]
gi|297174714|gb|EFH34061.1| integration host factor, beta subunit [Brucella abortus bv. 5
str. B3196]
Length = 94
Score = 110 bits (276), Expect = 7e-23, Method: Composition-based stats.
Identities = 50/91 (54%), Positives = 64/91 (70%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
MIKS L+ IA +NP L +DVE IV + +E+T ALA G RVE+RGFG+FSV+ R AR
Sbjct: 1 MIKSELVQIIASRNPHLFQRDVENIVGAVFDEITNALAEGNRVELRGFGAFSVKNRPARS 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + + VEEK VPFF+ GK L++RLN
Sbjct: 61 GRNPRTGETVDVEEKWVPFFKTGKKLRDRLN 91
>gi|253990302|ref|YP_003041658.1| integration host factor subunit beta [Photorhabdus asymbiotica
subsp. asymbiotica ATCC 43949]
gi|253781752|emb|CAQ84915.1| integration host factor beta-subunit (ihf-beta) [Photorhabdus
asymbiotica]
Length = 94
Score = 110 bits (276), Expect = 7e-23, Method: Composition-based stats.
Identities = 38/91 (41%), Positives = 56/91 (61%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI +A + ++ + VE V +L+ M LA+G R+E+RGFGSFS+ RA R+
Sbjct: 1 MTKSELIERLAGQQSHISAKTVEDAVKEMLDHMAVTLADGERIEVRGFGSFSLHYRAPRV 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + +E K VP F+ GK L++R+N
Sbjct: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRVN 91
>gi|91784810|ref|YP_560016.1| integration host factor subunit beta [Burkholderia xenovorans
LB400]
gi|123062639|sp|Q13VC5|IHFB_BURXL RecName: Full=Integration host factor subunit beta;
Short=IHF-beta
gi|91688764|gb|ABE31964.1| Integration host factor, beta subunit [Burkholderia xenovorans
LB400]
Length = 107
Score = 110 bits (276), Expect = 7e-23, Method: Composition-based stats.
Identities = 40/91 (43%), Positives = 62/91 (68%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS L+ +A + P+L +D + V +L+ M++ALANG R+EIRGFGSF + +R +R+
Sbjct: 1 MTKSELVAQLATRFPQLVLKDADFAVKTMLDAMSEALANGHRIEIRGFGSFGLNRRPSRV 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + + + V EK VP F+ GK L+ER++
Sbjct: 61 GRNPKSGEKVLVPEKYVPHFKPGKELRERVD 91
>gi|71276210|ref|ZP_00652489.1| Integration host factor, beta subunit [Xylella fastidiosa Dixon]
gi|71900469|ref|ZP_00682600.1| Integration host factor, beta subunit [Xylella fastidiosa Ann-1]
gi|14194873|sp|Q9PAQ8|IHFB_XYLFA RecName: Full=Integration host factor subunit beta;
Short=IHF-beta
gi|71162971|gb|EAO12694.1| Integration host factor, beta subunit [Xylella fastidiosa Dixon]
gi|71729775|gb|EAO31875.1| Integration host factor, beta subunit [Xylella fastidiosa Ann-1]
Length = 104
Score = 110 bits (275), Expect = 7e-23, Method: Composition-based stats.
Identities = 40/90 (44%), Positives = 53/90 (58%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI + K+ L DV+ V LLE M AL+ G R+EIRGFGSFS+ R R
Sbjct: 1 MTKSELIEILTKRQAHLKSDDVDLAVKSLLEMMGGALSEGDRIEIRGFGSFSLHYRPPRC 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P + +++ K VP F+ GK L+ER+
Sbjct: 61 GRNPKTGESVALPGKYVPHFKPGKELRERV 90
>gi|109898780|ref|YP_662035.1| integration host factor, beta subunit [Pseudoalteromonas
atlantica T6c]
gi|332306875|ref|YP_004434726.1| integration host factor, beta subunit [Glaciecola agarilytica
4H-3-7+YE-5]
gi|123171106|sp|Q15T07|IHFB_PSEA6 RecName: Full=Integration host factor subunit beta;
Short=IHF-beta
gi|109701061|gb|ABG40981.1| integration host factor, beta subunit [Pseudoalteromonas
atlantica T6c]
gi|332174204|gb|AEE23458.1| integration host factor, beta subunit [Glaciecola agarilytica
4H-3-7+YE-5]
Length = 96
Score = 110 bits (275), Expect = 7e-23, Method: Composition-based stats.
Identities = 41/93 (44%), Positives = 57/93 (61%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI +A K + +DVE + +LE+M Q L G R+EIRGFGSFS+ RA R+
Sbjct: 1 MTKSELIERLADKARHVPSRDVELAIKEMLEQMAQTLQKGERIEIRGFGSFSLHYRAPRV 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSP 93
R P + + ++ K VP F+ GK L+ER+N
Sbjct: 61 GRNPKTGETVELDGKHVPHFKPGKELRERVNED 93
>gi|262393794|ref|YP_003285648.1| integration host factor subunit beta [Vibrio sp. Ex25]
gi|269966532|ref|ZP_06180615.1| integration host factor beta subunit [Vibrio alginolyticus 40B]
gi|262337388|gb|ACY51183.1| integration host factor beta subunit [Vibrio sp. Ex25]
gi|269828876|gb|EEZ83127.1| integration host factor beta subunit [Vibrio alginolyticus 40B]
Length = 93
Score = 110 bits (275), Expect = 7e-23, Method: Composition-based stats.
Identities = 39/91 (42%), Positives = 54/91 (59%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI + + L+ ++VE V +LE M L +G R+EIRGFGSFS+ R R+
Sbjct: 1 MTKSELIERLCAEQTHLSAKEVEDAVKDILEHMASTLESGDRIEIRGFGSFSLHYREPRV 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + +E K VP F+ GK L+ER+N
Sbjct: 61 GRNPKTGDKVELEGKYVPHFKPGKELRERVN 91
>gi|88859272|ref|ZP_01133912.1| putative integration host factor (iHF), beta subunit,
site-specific recombination [Pseudoalteromonas tunicata
D2]
gi|88818289|gb|EAR28104.1| putative integration host factor (iHF), beta subunit,
site-specific recombination [Pseudoalteromonas tunicata
D2]
Length = 96
Score = 110 bits (275), Expect = 7e-23, Method: Composition-based stats.
Identities = 40/92 (43%), Positives = 60/92 (65%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI +A+++P+L+ +DVE V +LE+M +L+ R+EIRGFGSFS+ RA R+
Sbjct: 1 MTKSELIEQLAEQHPQLSAKDVENSVKEILEQMADSLSESQRIEIRGFGSFSLHFRAPRV 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P + + K VP F+ GK L++R+N
Sbjct: 61 GRNPKTGDTVELLGKYVPHFKPGKELRDRVNE 92
>gi|28199336|ref|NP_779650.1| integration host factor subunit beta [Xylella fastidiosa
Temecula1]
gi|71898751|ref|ZP_00680920.1| Integration host factor, beta subunit [Xylella fastidiosa Ann-1]
gi|182682061|ref|YP_001830221.1| integration host factor subunit beta [Xylella fastidiosa M23]
gi|32129615|sp|Q87BJ8|IHFB_XYLFT RecName: Full=Integration host factor subunit beta;
Short=IHF-beta
gi|226709821|sp|B2I6X0|IHFB_XYLF2 RecName: Full=Integration host factor subunit beta;
Short=IHF-beta
gi|28057442|gb|AAO29299.1| integration host factor, beta subunit [Xylella fastidiosa
Temecula1]
gi|71731516|gb|EAO33578.1| Integration host factor, beta subunit [Xylella fastidiosa Ann-1]
gi|182632171|gb|ACB92947.1| integration host factor, beta subunit [Xylella fastidiosa M23]
gi|307578329|gb|ADN62298.1| integration host factor subunit beta [Xylella fastidiosa subsp.
fastidiosa GB514]
Length = 104
Score = 110 bits (275), Expect = 7e-23, Method: Composition-based stats.
Identities = 40/90 (44%), Positives = 53/90 (58%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI + K+ L DV+ V LLE M AL+ G R+EIRGFGSFS+ R R
Sbjct: 1 MTKSELIEILTKRQAHLKSDDVDLAVKSLLEMMGGALSGGDRIEIRGFGSFSLHYRPPRC 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P + +++ K VP F+ GK L+ER+
Sbjct: 61 GRNPKTGESVALPGKYVPHFKPGKELRERV 90
>gi|212635294|ref|YP_002311819.1| integration host factor subunit beta [Shewanella piezotolerans WP3]
gi|212556778|gb|ACJ29232.1| Integration host factor, beta subunit [Shewanella piezotolerans
WP3]
Length = 113
Score = 110 bits (275), Expect = 7e-23, Method: Composition-based stats.
Identities = 39/95 (41%), Positives = 59/95 (62%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI +A + +L+ ++VE + +LE+M L G R+EIRGFGSFS+ RA R
Sbjct: 19 MTKSELIEKLATRQSQLSAKEVESAIKEMLEQMADTLEGGDRIEIRGFGSFSLHYRAPRT 78
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDS 95
R P + +E K VP F+ GK L+ER+++ ++
Sbjct: 79 GRNPKTGTSVDLEGKYVPHFKPGKELRERVDAVNA 113
>gi|71736668|ref|YP_275803.1| integration host factor subunit beta [Pseudomonas syringae pv.
phaseolicola 1448A]
gi|123775050|sp|Q48FN3|IHFB_PSE14 RecName: Full=Integration host factor subunit beta;
Short=IHF-beta
gi|71557221|gb|AAZ36432.1| integration host factor, beta subunit [Pseudomonas syringae pv.
phaseolicola 1448A]
Length = 98
Score = 110 bits (275), Expect = 7e-23, Method: Composition-based stats.
Identities = 42/96 (43%), Positives = 60/96 (62%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI I L+ +DVE + +LE+M+Q LA G R+EIRGFGSFS+ RA R+
Sbjct: 1 MTKSELIERIVTHQGLLSSKDVELAIKTMLEQMSQCLATGDRIEIRGFGSFSLHYRAPRV 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDST 96
R P + +S++ K VP F+ GK L++R+N +
Sbjct: 61 GRNPKTGRSVSLDGKFVPHFKPGKELRDRVNEDEEE 96
>gi|329296785|ref|ZP_08254121.1| transcriptional regulator HU subunit beta [Plautia stali
symbiont]
Length = 90
Score = 110 bits (275), Expect = 7e-23, Method: Composition-based stats.
Identities = 35/91 (38%), Positives = 54/91 (59%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI IA + ++ ++++ + ++ AL +G V + GFG+FSVR+RAAR
Sbjct: 1 MNKSQLIDKIAA-DADISKAAAGRVLDAFMGSVSDALKDGDEVALVGFGTFSVRERAART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P K I++ VP FR+GK LK+ +N
Sbjct: 60 GRNPQTGKEITIPAGKVPGFRSGKALKDAVN 90
>gi|302878375|ref|YP_003846939.1| integration host factor, beta subunit [Gallionella
capsiferriformans ES-2]
gi|302581164|gb|ADL55175.1| integration host factor, beta subunit [Gallionella
capsiferriformans ES-2]
Length = 93
Score = 110 bits (275), Expect = 8e-23, Method: Composition-based stats.
Identities = 39/90 (43%), Positives = 57/90 (63%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M +S LI +A+ +P+L +D E V ++L+ ++ L+ GGRVEIRGFGSF + R R
Sbjct: 1 MTRSDLIARLAELHPQLLAKDAEMAVKVILDALSSTLSRGGRVEIRGFGSFGLNYRPPRQ 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P + V K VP F+AGK+L+ER+
Sbjct: 61 GRNPKTGDKVGVPAKYVPHFKAGKDLRERV 90
>gi|33592108|ref|NP_879752.1| integration host factor beta-subunit [Bordetella pertussis Tohama
I]
gi|33571752|emb|CAE41253.1| integration host factor beta-subunit [Bordetella pertussis Tohama
I]
gi|332381524|gb|AEE66371.1| integration host factor beta-subunit [Bordetella pertussis CS]
Length = 119
Score = 110 bits (275), Expect = 8e-23, Method: Composition-based stats.
Identities = 42/91 (46%), Positives = 62/91 (68%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI +A + P+L +D + V +L+ MTQALA+G R+EIRGFGSFS+ +R+ R+
Sbjct: 1 MTKSELIAALAARYPQLAARDTDYAVKTMLDAMTQALASGQRIEIRGFGSFSLSQRSPRI 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + + + V K VP F+AGK L+E ++
Sbjct: 61 GRNPKSGEQVLVPGKQVPHFKAGKELREWVD 91
>gi|254252926|ref|ZP_04946244.1| Integration host factor [Burkholderia dolosa AUO158]
gi|124895535|gb|EAY69415.1| Integration host factor [Burkholderia dolosa AUO158]
Length = 107
Score = 110 bits (275), Expect = 8e-23, Method: Composition-based stats.
Identities = 40/91 (43%), Positives = 60/91 (65%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS L+ +A + P+L +D + V +L+ M+ ALA G R+EIRGFGSF + +R AR+
Sbjct: 1 MTKSELVAQLALRFPQLVLKDADFAVKTMLDAMSDALAKGHRIEIRGFGSFGLNRRPARV 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + + + V EK VP F+ GK L+ER++
Sbjct: 61 GRNPKSGEKVQVPEKFVPHFKPGKELRERVD 91
>gi|37525568|ref|NP_928912.1| integration host factor subunit beta [Photorhabdus luminescens
subsp. laumondii TTO1]
gi|81707739|sp|Q7N6D2|IHFB_PHOLL RecName: Full=Integration host factor subunit beta;
Short=IHF-beta
gi|36784996|emb|CAE13916.1| integration host factor beta-subunit (IHF-beta) [Photorhabdus
luminescens subsp. laumondii TTO1]
Length = 94
Score = 110 bits (275), Expect = 8e-23, Method: Composition-based stats.
Identities = 38/91 (41%), Positives = 56/91 (61%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI +A + ++ + VE V +L+ M LA+G R+E+RGFGSFS+ RA R+
Sbjct: 1 MTKSELIERLAGQQSHISAKTVEDAVKEILDHMAITLADGERIEVRGFGSFSLHYRAPRV 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + +E K VP F+ GK L++R+N
Sbjct: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRVN 91
>gi|300715594|ref|YP_003740397.1| DNA-binding protein HU-beta [Erwinia billingiae Eb661]
gi|299061430|emb|CAX58542.1| DNA-binding protein HU-beta [Erwinia billingiae Eb661]
Length = 90
Score = 110 bits (275), Expect = 9e-23, Method: Composition-based stats.
Identities = 33/91 (36%), Positives = 52/91 (57%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI IA + ++ ++++ + ++ +L G V + GFG+FSVR+R+ R
Sbjct: 1 MNKSQLIDKIAA-SADISKAAAGRVLDAFMGSVSDSLKEGDEVALVGFGTFSVRERSERT 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P K I++ VP FRAGK LK+ +N
Sbjct: 60 GRNPQTGKEITIPAGKVPGFRAGKALKDAVN 90
>gi|253998814|ref|YP_003050877.1| integration host factor subunit beta [Methylovorus sp. SIP3-4]
gi|313200901|ref|YP_004039559.1| integration host factor subunit beta [Methylovorus sp. MP688]
gi|253985493|gb|ACT50350.1| integration host factor, beta subunit [Methylovorus sp. SIP3-4]
gi|312440217|gb|ADQ84323.1| integration host factor, beta subunit [Methylovorus sp. MP688]
Length = 94
Score = 110 bits (275), Expect = 9e-23, Method: Composition-based stats.
Identities = 42/91 (46%), Positives = 57/91 (62%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI +A + P+L +D E V +++ M LA+G R+EIRGFGSFS+ R RL
Sbjct: 1 MTKSELIANLAARFPQLVVKDAELSVKAIIDSMADNLASGERIEIRGFGSFSLNYRPPRL 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + V EK VP F+AGK L+ER++
Sbjct: 61 GRNPKTGSKVQVPEKYVPHFKAGKELRERVD 91
>gi|242239664|ref|YP_002987845.1| integration host factor subunit beta [Dickeya dadantii Ech703]
gi|242131721|gb|ACS86023.1| integration host factor, beta subunit [Dickeya dadantii Ech703]
Length = 95
Score = 110 bits (275), Expect = 9e-23, Method: Composition-based stats.
Identities = 40/91 (43%), Positives = 56/91 (61%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI +A + + + VE+ V +LE+M LA+G R+EIRGFGSFS+ RA R
Sbjct: 1 MTKSELIERLAGQQSHIPAKVVEEAVKEMLEQMATTLADGDRIEIRGFGSFSLHYRAPRT 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + + +E K VP F+ GK L++R N
Sbjct: 61 GRNPKTGEKVDLEGKYVPHFKPGKELRDRAN 91
>gi|56476801|ref|YP_158390.1| integration host factor beta-subunit (ihf-beta) [Aromatoleum
aromaticum EbN1]
gi|56312844|emb|CAI07489.1| integration host factor beta-subunit (ihf-beta) [Aromatoleum
aromaticum EbN1]
Length = 104
Score = 109 bits (274), Expect = 9e-23, Method: Composition-based stats.
Identities = 42/91 (46%), Positives = 60/91 (65%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI +A++ P+L +D E+ V ++L MT AL GGR+EIRGFGSFS R R+
Sbjct: 1 MTKSELIDRLAQRFPQLVARDAEEAVKVILGTMTNALTQGGRIEIRGFGSFSSSYRPPRV 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + + + V K VP F++GK L+ER++
Sbjct: 61 GRNPKSGETVHVSGKYVPHFKSGKELRERVD 91
>gi|13472793|ref|NP_104360.1| integration host factor subunit beta [Mesorhizobium loti
MAFF303099]
gi|260460500|ref|ZP_05808751.1| integration host factor, beta subunit [Mesorhizobium
opportunistum WSM2075]
gi|319781467|ref|YP_004140943.1| integration host factor, subunit beta [Mesorhizobium ciceri
biovar biserrulae WSM1271]
gi|21362613|sp|Q98GS0|IHFB_RHILO RecName: Full=Integration host factor subunit beta;
Short=IHF-beta
gi|14023540|dbj|BAB50146.1| integration host factor beta chain [Mesorhizobium loti
MAFF303099]
gi|259033605|gb|EEW34865.1| integration host factor, beta subunit [Mesorhizobium
opportunistum WSM2075]
gi|317167355|gb|ADV10893.1| integration host factor, beta subunit [Mesorhizobium ciceri
biovar biserrulae WSM1271]
Length = 94
Score = 109 bits (274), Expect = 9e-23, Method: Composition-based stats.
Identities = 51/94 (54%), Positives = 64/94 (68%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
MIKS L+ IA +NP L +DVE IV + +E+T ALA G RVE+RGFG+FSV+ R AR
Sbjct: 1 MIKSELVQIIATRNPHLFLRDVENIVGAIFDEITDALAEGNRVELRGFGAFSVKNRPART 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSPD 94
R P + + VEEK VPFF+ GK L+ERLN
Sbjct: 61 GRNPRTGESVEVEEKWVPFFKTGKELRERLNGGK 94
>gi|269961757|ref|ZP_06176117.1| integration host factor beta subunit [Vibrio harveyi 1DA3]
gi|269833540|gb|EEZ87639.1| integration host factor beta subunit [Vibrio harveyi 1DA3]
Length = 94
Score = 109 bits (274), Expect = 1e-22, Method: Composition-based stats.
Identities = 39/91 (42%), Positives = 54/91 (59%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI + + L+ ++VE V +LE M L +G R+EIRGFGSFS+ R R+
Sbjct: 1 MTKSELIERLCAEQTHLSAKEVEDAVKDILEHMASTLESGDRIEIRGFGSFSLHYREPRV 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + +E K VP F+ GK L+ER+N
Sbjct: 61 GRNPKTGDKVELEGKYVPHFKPGKELRERVN 91
>gi|296159961|ref|ZP_06842781.1| integration host factor, beta subunit [Burkholderia sp. Ch1-1]
gi|295889707|gb|EFG69505.1| integration host factor, beta subunit [Burkholderia sp. Ch1-1]
Length = 107
Score = 109 bits (274), Expect = 1e-22, Method: Composition-based stats.
Identities = 40/91 (43%), Positives = 62/91 (68%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS L+ +A + P+L +D + V +L+ M++ALANG R+EIRGFGSF + +R +R+
Sbjct: 1 MTKSELVAQLATRFPQLVLKDADFAVKTMLDAMSEALANGHRIEIRGFGSFGLNRRPSRV 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + + + V EK VP F+ GK L+ER++
Sbjct: 61 GRNPKSGEKVLVPEKYVPHFKPGKELRERVD 91
>gi|220934118|ref|YP_002513017.1| histone family protein DNA-binding protein [Thioalkalivibrio sp.
HL-EbGR7]
gi|219995428|gb|ACL72030.1| histone family protein DNA-binding protein [Thioalkalivibrio sp.
HL-EbGR7]
Length = 90
Score = 109 bits (274), Expect = 1e-22, Method: Composition-based stats.
Identities = 35/91 (38%), Positives = 52/91 (57%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI IA + L + V+ +++ ++ AL NG +V I GFG+F VR+R AR
Sbjct: 1 MNKSELIDAIAA-SSDLPKAQAARAVDAMIDVISGALKNGDQVTIVGFGTFLVREREART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + I + +P F+AGK LK+ +N
Sbjct: 60 GRNPRTGETIQIAASKMPSFKAGKGLKDAVN 90
>gi|146282847|ref|YP_001173000.1| integration host factor subunit beta [Pseudomonas stutzeri A1501]
gi|166975883|sp|A4VMF7|IHFB_PSEU5 RecName: Full=Integration host factor subunit beta;
Short=IHF-beta
gi|145571052|gb|ABP80158.1| integration host factor, beta subunit [Pseudomonas stutzeri
A1501]
gi|327481185|gb|AEA84495.1| integration host factor subunit beta [Pseudomonas stutzeri DSM
4166]
Length = 93
Score = 109 bits (274), Expect = 1e-22, Method: Composition-based stats.
Identities = 43/93 (46%), Positives = 60/93 (64%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI I + L+ +DVE + +LE+M QALA G R+EIRGFGSFS+ RA R+
Sbjct: 1 MTKSELIERIVTQQGLLSSKDVELAIKTMLEQMAQALATGERIEIRGFGSFSLHYRAPRV 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSP 93
R P + +S++ K VP F+ GK L++R+N
Sbjct: 61 GRNPKTGQSVSLDGKFVPHFKPGKELRDRVNDD 93
>gi|126669094|ref|ZP_01740025.1| integration host factor, beta subunit [Marinobacter sp. ELB17]
gi|126626449|gb|EAZ97115.1| integration host factor, beta subunit [Marinobacter sp. ELB17]
Length = 98
Score = 109 bits (274), Expect = 1e-22, Method: Composition-based stats.
Identities = 42/92 (45%), Positives = 62/92 (67%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS L+ IA K +L+ +DVE V ++E M+++LA+G R+EIRGFGSFS+ RAAR+
Sbjct: 1 MTKSELVELIASKQTQLSVKDVELAVKTIIEHMSRSLADGQRIEIRGFGSFSLHHRAARV 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P + + + K VP F+ GK L+E++N
Sbjct: 61 GRNPKSGDAVQLPAKFVPHFKPGKELREQVNE 92
>gi|298368498|ref|ZP_06979816.1| DNA-binding protein HU-beta [Neisseria sp. oral taxon 014 str.
F0314]
gi|298282501|gb|EFI23988.1| DNA-binding protein HU-beta [Neisseria sp. oral taxon 014 str.
F0314]
Length = 91
Score = 109 bits (274), Expect = 1e-22, Method: Composition-based stats.
Identities = 30/91 (32%), Positives = 49/91 (53%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI IA + +L+ + + V+ + +TQ L +G V + GFG+F + A R
Sbjct: 1 MNKSELIQAIADE-AELSKRAAAEFVDAFVSVVTQELKDGNDVTLVGFGTFHTAQSAERQ 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + +++ + P FR GK LK+ +N
Sbjct: 60 GRNPKTGEPLTIAARKTPKFRPGKALKDAVN 90
>gi|186475512|ref|YP_001856982.1| integration host factor subunit beta [Burkholderia phymatum
STM815]
gi|226709782|sp|B2JF07|IHFB_BURP8 RecName: Full=Integration host factor subunit beta;
Short=IHF-beta
gi|184191971|gb|ACC69936.1| integration host factor, beta subunit [Burkholderia phymatum
STM815]
Length = 107
Score = 109 bits (274), Expect = 1e-22, Method: Composition-based stats.
Identities = 40/93 (43%), Positives = 61/93 (65%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS L+ +A + P+L +D + V +L+ M+ ALANG R+EIRGFGSF + +R +R+
Sbjct: 1 MTKSELVAQLATRFPQLVLKDADFAVKTMLDAMSDALANGHRIEIRGFGSFGLNRRPSRV 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSP 93
R P + + + V EK VP F+ GK L+ER++
Sbjct: 61 GRNPKSGEKVLVPEKHVPHFKPGKELRERVDRN 93
>gi|251789938|ref|YP_003004659.1| integration host factor subunit beta [Dickeya zeae Ech1591]
gi|247538559|gb|ACT07180.1| integration host factor, beta subunit [Dickeya zeae Ech1591]
Length = 94
Score = 109 bits (274), Expect = 1e-22, Method: Composition-based stats.
Identities = 40/91 (43%), Positives = 57/91 (62%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI +A ++ + + VE V +LE+M LA+G R+EIRGFGSFS+ RA R+
Sbjct: 1 MTKSELIERLAGQHSHIPAKVVEDAVKEMLEQMATTLASGDRIEIRGFGSFSLHYRAPRV 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + + +E K VP F+ GK L++R N
Sbjct: 61 GRNPKTGEKVELEGKYVPHFKPGKELRDRAN 91
>gi|27366256|ref|NP_761784.1| integration host factor subunit beta [Vibrio vulnificus CMCP6]
gi|320156765|ref|YP_004189144.1| integration host factor subunit beta [Vibrio vulnificus MO6-24/O]
gi|33301285|sp|Q8D8J3|IHFB_VIBVU RecName: Full=Integration host factor subunit beta;
Short=IHF-beta
gi|27362457|gb|AAO11311.1| integration host factor, beta subunit [Vibrio vulnificus CMCP6]
gi|319932077|gb|ADV86941.1| integration host factor beta subunit [Vibrio vulnificus MO6-24/O]
Length = 93
Score = 109 bits (274), Expect = 1e-22, Method: Composition-based stats.
Identities = 38/91 (41%), Positives = 54/91 (59%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI + + L+ +++E V +LE M L +G R+EIRGFGSFS+ R R+
Sbjct: 1 MTKSELIERLCAEQTHLSAKEIEDAVKDILEHMASTLESGDRIEIRGFGSFSLHYREPRV 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + +E K VP F+ GK L+ER+N
Sbjct: 61 GRNPKTGDKVELEGKYVPHFKPGKELRERVN 91
>gi|255592017|ref|XP_002535650.1| Integration host factor beta-subunit, putative [Ricinus communis]
gi|223522397|gb|EEF26731.1| Integration host factor beta-subunit, putative [Ricinus communis]
Length = 93
Score = 109 bits (274), Expect = 1e-22, Method: Composition-based stats.
Identities = 48/93 (51%), Positives = 63/93 (67%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
MIKS LI +A +NP L +DVE++V ++LE M AL GGRVE+RGFG+ SVR R AR
Sbjct: 1 MIKSELIARLANENPHLTQKDVERVVGVILERMINALEAGGRVELRGFGALSVRSRPARA 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSP 93
R P + + V K VPFF++GK L+ RLN+
Sbjct: 61 GRNPRTGETVDVRAKHVPFFKSGKELRARLNAE 93
>gi|254437270|ref|ZP_05050764.1| integration host factor, beta subunit [Octadecabacter antarcticus
307]
gi|198252716|gb|EDY77030.1| integration host factor, beta subunit [Octadecabacter antarcticus
307]
Length = 93
Score = 109 bits (274), Expect = 1e-22, Method: Composition-based stats.
Identities = 51/93 (54%), Positives = 69/93 (74%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
MI+S L TIA++NP L +DVE+IVN + E + +A++NG RVE+RGFG+FSV+KR ARL
Sbjct: 1 MIRSELTDTIAEQNPHLYQRDVERIVNTIFERVIEAMSNGDRVELRGFGAFSVKKRDARL 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSP 93
R P + + VEEK VPFF+ GK L++RLN
Sbjct: 61 GRNPRTGEAVQVEEKHVPFFKTGKLLRDRLNGK 93
>gi|330445636|ref|ZP_08309288.1| integration host factor, beta subunit [Photobacterium leiognathi
subsp. mandapamensis svers.1.1.]
gi|328489827|dbj|GAA03785.1| integration host factor, beta subunit [Photobacterium leiognathi
subsp. mandapamensis svers.1.1.]
Length = 96
Score = 109 bits (273), Expect = 1e-22, Method: Composition-based stats.
Identities = 38/92 (41%), Positives = 55/92 (59%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI + + L+ + VE + +LE M LA G R+EIRGFGSFS+ RA R+
Sbjct: 1 MTKSELIERLCSQQTHLSAKQVEDAIKDILENMANTLAEGDRIEIRGFGSFSLHYRAPRV 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P + ++ K VP F+ GK L++R+N+
Sbjct: 61 GRNPKTGDKVELDGKYVPHFKPGKELRDRVNA 92
>gi|89094099|ref|ZP_01167042.1| integration host factor beta subunit [Oceanospirillum sp. MED92]
gi|89081574|gb|EAR60803.1| integration host factor beta subunit [Oceanospirillum sp. MED92]
Length = 96
Score = 109 bits (273), Expect = 1e-22, Method: Composition-based stats.
Identities = 41/91 (45%), Positives = 62/91 (68%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI + ++ +L+ +D+E V +L+ MT++L+ G R+EIRGFGSFS+ RA R
Sbjct: 1 MTKSELIEILVDRHDQLSVKDIELSVKTMLDHMTESLSEGNRIEIRGFGSFSLHYRAPRT 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + +S+EEK VP F+ GK L+E++N
Sbjct: 61 GRNPKTGESVSLEEKFVPHFKPGKELREQVN 91
>gi|296447327|ref|ZP_06889255.1| integration host factor, beta subunit [Methylosinus trichosporium
OB3b]
gi|296255192|gb|EFH02291.1| integration host factor, beta subunit [Methylosinus trichosporium
OB3b]
Length = 96
Score = 109 bits (273), Expect = 1e-22, Method: Composition-based stats.
Identities = 51/95 (53%), Positives = 66/95 (69%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
MIKS LI IA +N L +DVE IV +L+E+ ALA G RVE+RGFG+FSV++R AR
Sbjct: 1 MIKSELIQRIASRNGHLYQRDVETIVTTILDEIALALARGDRVELRGFGAFSVKRREART 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDS 95
R P + +SVEEK VPFF+ GK ++ERLN +
Sbjct: 61 GRNPRTGEQVSVEEKSVPFFKTGKEMRERLNETSN 95
>gi|319898205|ref|YP_004158298.1| integration host factor beta chain [Bartonella clarridgeiae 73]
gi|319402169|emb|CBI75695.1| integration host factor beta chain [Bartonella clarridgeiae 73]
Length = 92
Score = 109 bits (273), Expect = 1e-22, Method: Composition-based stats.
Identities = 48/91 (52%), Positives = 66/91 (72%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M+KS L+ IA+ NP L +D E +VN + EE++ ALANG RVE+RGFG+FS++ R AR
Sbjct: 1 MVKSELVQIIARHNPHLMQRDAENVVNAIFEEISAALANGQRVELRGFGAFSIKTRLARN 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + + VEEK VPFF+ GK+L++RLN
Sbjct: 61 GRNPRTGETVMVEEKWVPFFKTGKDLRDRLN 91
>gi|119471944|ref|ZP_01614229.1| putative integration host factor (iHF), beta subunit,
site-specific recombination [Alteromonadales bacterium
TW-7]
gi|119445202|gb|EAW26493.1| putative integration host factor (iHF), beta subunit,
site-specific recombination [Alteromonadales bacterium
TW-7]
Length = 95
Score = 109 bits (273), Expect = 1e-22, Method: Composition-based stats.
Identities = 39/92 (42%), Positives = 60/92 (65%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI T+A+++ + +DVE V +LE+M +L++ R+EIRGFGSFS+ RA R
Sbjct: 1 MTKSELIETLAEQHAHVPVKDVENAVKEILEQMAGSLSSSDRIEIRGFGSFSLHFRAPRT 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P + ++ K VP F+ GK L++R+N+
Sbjct: 61 GRNPKTGDTVELDGKHVPHFKPGKELRDRVNA 92
>gi|254514390|ref|ZP_05126451.1| DNA-binding protein HU [gamma proteobacterium NOR5-3]
gi|219676633|gb|EED32998.1| DNA-binding protein HU [gamma proteobacterium NOR5-3]
Length = 91
Score = 109 bits (273), Expect = 1e-22, Method: Composition-based stats.
Identities = 35/92 (38%), Positives = 54/92 (58%), Gaps = 1/92 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI IA +N D + ++ +++ +T+ L G +V + GFG+FSV+ RAAR
Sbjct: 1 MNKSDLIDAIASA-ADINKSDAGRALDAVVDSITETLKRGDQVSLVGFGTFSVKHRAARD 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P + I ++ VP F+AGK LK+ +N
Sbjct: 60 GRNPQTGETIKIKASNVPGFKAGKALKDAVNQ 91
>gi|170693720|ref|ZP_02884878.1| integration host factor, beta subunit [Burkholderia graminis
C4D1M]
gi|209519345|ref|ZP_03268144.1| integration host factor, beta subunit [Burkholderia sp. H160]
gi|295677276|ref|YP_003605800.1| integration host factor, beta subunit [Burkholderia sp. CCGE1002]
gi|307730619|ref|YP_003907843.1| integration host factor subunit beta [Burkholderia sp. CCGE1003]
gi|323526953|ref|YP_004229106.1| integration host factor subunit beta [Burkholderia sp. CCGE1001]
gi|170141502|gb|EDT09672.1| integration host factor, beta subunit [Burkholderia graminis
C4D1M]
gi|209500229|gb|EEA00286.1| integration host factor, beta subunit [Burkholderia sp. H160]
gi|295437119|gb|ADG16289.1| integration host factor, beta subunit [Burkholderia sp. CCGE1002]
gi|307585154|gb|ADN58552.1| integration host factor, beta subunit [Burkholderia sp. CCGE1003]
gi|323383955|gb|ADX56046.1| integration host factor, beta subunit [Burkholderia sp. CCGE1001]
Length = 107
Score = 109 bits (273), Expect = 1e-22, Method: Composition-based stats.
Identities = 39/91 (42%), Positives = 61/91 (67%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS L+ +A + P+L +D + V +L+ M++ALA G R+EIRGFGSF + +R +R+
Sbjct: 1 MTKSELVAQLATRFPQLVLKDADFAVKTMLDAMSEALAKGHRIEIRGFGSFGLNRRPSRV 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + + + V EK VP F+ GK L+ER++
Sbjct: 61 GRNPKSGEKVLVPEKYVPHFKPGKELRERVD 91
>gi|163867319|ref|YP_001608513.1| integration host factor subunit beta [Bartonella tribocorum CIP
105476]
gi|254803527|sp|A9IL25|IHFB_BART1 RecName: Full=Integration host factor subunit beta;
Short=IHF-beta
gi|161016960|emb|CAK00518.1| integration host factor beta chain [Bartonella tribocorum CIP
105476]
Length = 92
Score = 109 bits (273), Expect = 1e-22, Method: Composition-based stats.
Identities = 49/92 (53%), Positives = 69/92 (75%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M+KS L+ IA+ NP L +DVE IVN + EE++ ALANG RVE+RGFG+FSV+ R+AR
Sbjct: 1 MVKSELVQIIARHNPHLFQRDVENIVNAIFEEISTALANGDRVELRGFGAFSVKSRSARN 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P + ++V+EK +PFF+ GK+L++RLN
Sbjct: 61 GRNPRTGEAVAVDEKWIPFFKTGKDLRDRLNQ 92
>gi|329894936|ref|ZP_08270735.1| DNA-binding protein HU-beta [gamma proteobacterium IMCC3088]
gi|328922665|gb|EGG30000.1| DNA-binding protein HU-beta [gamma proteobacterium IMCC3088]
Length = 91
Score = 109 bits (273), Expect = 1e-22, Method: Composition-based stats.
Identities = 35/92 (38%), Positives = 51/92 (55%), Gaps = 1/92 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI IA + ++ + ++ ++E +T AL G V + GFG+F V+ RAAR
Sbjct: 1 MNKSELIDAIAA-SADISKASAGRALDAVVESITGALQKGDSVSLVGFGTFQVKPRAART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P I + VP F+AGK LK+ +NS
Sbjct: 60 GRNPQTGAEIQIAAANVPGFKAGKALKDAVNS 91
>gi|56475921|ref|YP_157510.1| integration host factor subunit beta [Aromatoleum aromaticum
EbN1]
gi|56311964|emb|CAI06609.1| integration host factor beta-subunit [Aromatoleum aromaticum
EbN1]
Length = 94
Score = 109 bits (273), Expect = 1e-22, Method: Composition-based stats.
Identities = 41/91 (45%), Positives = 61/91 (67%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI +A + P+L +D + V M+++ M++ALA G R+EIRGFGSF++ R R+
Sbjct: 1 MTKSELIARLAARFPQLVAKDADYAVKMVIDAMSEALARGDRIEIRGFGSFALNYRPPRV 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + + V EK VP F+AGK L+ER++
Sbjct: 61 GRNPKSGDKVLVPEKYVPHFKAGKELRERVD 91
>gi|257094466|ref|YP_003168107.1| integration host factor subunit beta [Candidatus Accumulibacter
phosphatis clade IIA str. UW-1]
gi|257046990|gb|ACV36178.1| integration host factor, beta subunit [Candidatus Accumulibacter
phosphatis clade IIA str. UW-1]
Length = 97
Score = 109 bits (273), Expect = 1e-22, Method: Composition-based stats.
Identities = 43/97 (44%), Positives = 66/97 (68%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI +A++ P+L +D + V M+LE M +AL+NG R+EIRGFGSF++ R R+
Sbjct: 1 MTKSDLIAQLAERFPQLVAKDADLSVKMILEAMAEALSNGDRIEIRGFGSFALNYRPPRV 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDSTL 97
R P + + ++V EK VP F+AGK L+ER++ ++
Sbjct: 61 GRNPKSGEKVNVPEKWVPHFKAGKELRERVDGSLESI 97
>gi|325925940|ref|ZP_08187308.1| integration host factor, beta subunit [Xanthomonas perforans
91-118]
gi|325543663|gb|EGD15078.1| integration host factor, beta subunit [Xanthomonas perforans
91-118]
Length = 103
Score = 109 bits (272), Expect = 2e-22, Method: Composition-based stats.
Identities = 42/89 (47%), Positives = 56/89 (62%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI +A++ L DV+ V LLE M QAL++G R+EIRGFGSFS+ R RL
Sbjct: 1 MTKSELIEILARRQAHLKSDDVDLAVKSLLEMMGQALSDGDRIEIRGFGSFSLHYRPPRL 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKER 89
R P + +++ K VP F+ GK L+ER
Sbjct: 61 GRNPKTGESVALPGKHVPHFKPGKELRER 89
>gi|291614517|ref|YP_003524674.1| integration host factor, subunit beta [Sideroxydans
lithotrophicus ES-1]
gi|291584629|gb|ADE12287.1| integration host factor, beta subunit [Sideroxydans
lithotrophicus ES-1]
Length = 95
Score = 109 bits (272), Expect = 2e-22, Method: Composition-based stats.
Identities = 39/91 (42%), Positives = 59/91 (64%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M +S LI +A + +L +D E V ++L+ M+ L++GGR+EIRGFGSF++ R RL
Sbjct: 1 MTRSDLIAKLADRYTQLLGKDAELAVKVILDSMSATLSHGGRIEIRGFGSFALNYRPPRL 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + + V K VP F+AGK L+ER++
Sbjct: 61 GRNPKSGDKVQVPAKYVPHFKAGKELRERVD 91
>gi|317491459|ref|ZP_07949895.1| integration host protein [Enterobacteriaceae bacterium 9_2_54FAA]
gi|316921006|gb|EFV42329.1| integration host protein [Enterobacteriaceae bacterium 9_2_54FAA]
Length = 94
Score = 109 bits (272), Expect = 2e-22, Method: Composition-based stats.
Identities = 42/91 (46%), Positives = 55/91 (60%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI +A + P L + VE V +LE M LA+G R+EIRGFGSFS+ RA R+
Sbjct: 1 MTKSELIERLASQQPHLPAKAVEDAVKEMLEHMATTLADGERIEIRGFGSFSLHYRAPRV 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + +E K VP F+ GK L++R N
Sbjct: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRAN 91
>gi|290473874|ref|YP_003466748.1| integration host factor (IHF) subunit beta, site-specific
recombination [Xenorhabdus bovienii SS-2004]
gi|289173181|emb|CBJ79954.1| integration host factor (IHF), beta subunit, site-specific
recombination [Xenorhabdus bovienii SS-2004]
Length = 96
Score = 109 bits (272), Expect = 2e-22, Method: Composition-based stats.
Identities = 37/91 (40%), Positives = 55/91 (60%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI + ++ + + VE V +L+ M + LA G R+E+RGFGSFS+ RA R+
Sbjct: 1 MTKSELIERLTEQQSHMPAKAVEDAVKEMLDHMAETLAAGERIEVRGFGSFSLHYRAPRV 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + +E K VP F+ GK L++R+N
Sbjct: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRVN 91
>gi|308049648|ref|YP_003913214.1| integration host factor, beta subunit [Ferrimonas balearica DSM
9799]
gi|307631838|gb|ADN76140.1| integration host factor, beta subunit [Ferrimonas balearica DSM
9799]
Length = 94
Score = 109 bits (272), Expect = 2e-22, Method: Composition-based stats.
Identities = 40/91 (43%), Positives = 57/91 (62%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI +A K L+ ++VE + +LE+M L +G R+EIRGFGSFS+ RA R+
Sbjct: 1 MTKSELIERLASKQSHLSGKEVEGAIKEMLEQMASTLEHGDRIEIRGFGSFSLHYRAPRV 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + + + K VP F+ GK L+ER+N
Sbjct: 61 GRNPKTGESVELTGKFVPHFKPGKELRERVN 91
>gi|288986945|ref|YP_003456908.1| integration host factor, beta subunit [Allochromatium vinosum DSM
180]
gi|288898324|gb|ADC64158.1| integration host factor, beta subunit [Allochromatium vinosum DSM
180]
Length = 95
Score = 109 bits (272), Expect = 2e-22, Method: Composition-based stats.
Identities = 38/91 (41%), Positives = 53/91 (58%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M +S LI +A + L DVE +V LL + ++LANG R+E+RGFGSFS+ R R
Sbjct: 1 MTRSELITQMANRQEHLPEADVEVVVKALLNLLRESLANGERIEVRGFGSFSLHYRPPRQ 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
AR P + + K F+ GK L+ER+N
Sbjct: 61 ARNPKTGETVFTAGKHYLHFKPGKELRERVN 91
>gi|294676676|ref|YP_003577291.1| integration host factor subunit beta [Rhodobacter capsulatus SB
1003]
gi|547714|sp|Q06607|IHFB_RHOCA RecName: Full=Integration host factor subunit beta;
Short=IHF-beta
gi|294661|gb|AAA03551.1| HIP [Rhodobacter capsulatus]
gi|294475496|gb|ADE84884.1| integration host factor, beta subunit [Rhodobacter capsulatus SB
1003]
Length = 95
Score = 109 bits (272), Expect = 2e-22, Method: Composition-based stats.
Identities = 51/95 (53%), Positives = 69/95 (72%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
MI+S LI IA++NP L +DVEKIVN + EE+ +A+A G RVE+RGFG+FSV+KR AR
Sbjct: 1 MIRSELIAKIAEENPHLFQRDVEKIVNTIFEEIIEAMARGDRVELRGFGAFSVKKRDART 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDS 95
R P ++V+EK VPFF+ GK L++RLN +
Sbjct: 61 GRNPRTGTSVAVDEKHVPFFKTGKLLRDRLNGGEE 95
>gi|332993174|gb|AEF03229.1| integration host factor subunit beta [Alteromonas sp. SN2]
Length = 95
Score = 109 bits (272), Expect = 2e-22, Method: Composition-based stats.
Identities = 39/92 (42%), Positives = 59/92 (64%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI +A + ++ +D+E + LLE+M Q L G R+EIRGFGSFS+ RA R+
Sbjct: 1 MTKSELIERLADQARQIPAKDLELAIKELLEQMAQTLQKGDRIEIRGFGSFSLHYRAPRV 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P + + ++ K VP F+ GK L+ER+++
Sbjct: 61 GRNPKTGETVELDGKYVPHFKPGKELRERVDA 92
>gi|269102377|ref|ZP_06155074.1| integration host factor beta subunit [Photobacterium damselae
subsp. damselae CIP 102761]
gi|268162275|gb|EEZ40771.1| integration host factor beta subunit [Photobacterium damselae
subsp. damselae CIP 102761]
Length = 95
Score = 109 bits (272), Expect = 2e-22, Method: Composition-based stats.
Identities = 37/92 (40%), Positives = 55/92 (59%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI + + L+ + VE + +LE+M L G R+EIRGFGSFS+ RA R+
Sbjct: 1 MTKSELIERLCSQQTHLSAKQVEDAIKEILEQMATTLEQGERIEIRGFGSFSLHFRAPRV 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P + ++ K VP F+ GK L++R+N+
Sbjct: 61 GRNPKTGDKVELDGKYVPHFKPGKELRDRVNA 92
>gi|119505041|ref|ZP_01627117.1| hypothetical protein MGP2080_15169 [marine gamma proteobacterium
HTCC2080]
gi|119459023|gb|EAW40122.1| hypothetical protein MGP2080_15169 [marine gamma proteobacterium
HTCC2080]
Length = 98
Score = 109 bits (272), Expect = 2e-22, Method: Composition-based stats.
Identities = 39/91 (42%), Positives = 59/91 (64%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M +S LI IA + +L+ +DVE V ++++ M + L++G R+EIRGFGSFS+ R R
Sbjct: 1 MTRSELIEKIASQQSQLSTKDVELAVKLMIDHMAETLSSGERIEIRGFGSFSLHYREPRQ 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P +++E K VP F+ GK L+ER+N
Sbjct: 61 GRNPKTGDSVALEGKHVPHFKPGKELRERVN 91
>gi|114770171|ref|ZP_01447709.1| integration host factor beta subunit [alpha proteobacterium
HTCC2255]
gi|114549008|gb|EAU51891.1| integration host factor beta subunit [alpha proteobacterium
HTCC2255]
Length = 93
Score = 109 bits (272), Expect = 2e-22, Method: Composition-based stats.
Identities = 46/91 (50%), Positives = 66/91 (72%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
MI+S L+ IA +NP L +D+E+I+ + +E+ A++NG RVE+RGFGSFSV++R AR
Sbjct: 1 MIRSELVEKIAAENPHLFQRDIERIIGTVFDEIIDAMSNGNRVELRGFGSFSVKQREARR 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + + VEEK VPFF+ GK L++RLN
Sbjct: 61 GRNPRTGETVDVEEKHVPFFKTGKLLRDRLN 91
>gi|114321434|ref|YP_743117.1| histone family protein DNA-binding protein [Alkalilimnicola
ehrlichii MLHE-1]
gi|114227828|gb|ABI57627.1| histone family protein DNA-binding protein [Alkalilimnicola
ehrlichii MLHE-1]
Length = 90
Score = 109 bits (272), Expect = 2e-22, Method: Composition-based stats.
Identities = 35/91 (38%), Positives = 55/91 (60%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI +A ++ ++ + V+ ++E +T AL G +V + GFG+F VR+RAAR
Sbjct: 1 MNKSELIEAVA-QSADISKAAASRAVDSMVECVTNALKEGDQVTLVGFGTFQVRERAART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + I++ VP F+AGK LK+ +N
Sbjct: 60 GRNPRTGETINIAASKVPSFKAGKALKDAVN 90
>gi|262274460|ref|ZP_06052271.1| integration host factor beta subunit [Grimontia hollisae CIP
101886]
gi|262221023|gb|EEY72337.1| integration host factor beta subunit [Grimontia hollisae CIP
101886]
Length = 93
Score = 109 bits (272), Expect = 2e-22, Method: Composition-based stats.
Identities = 37/91 (40%), Positives = 53/91 (58%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI + + L+ + VE + +LE M L G R+EIRGFGSFS+ RA R+
Sbjct: 1 MTKSELIERLCSQQTHLSAKQVEDAIKEILEHMATTLEEGDRIEIRGFGSFSLHYRAPRV 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + ++ K VP F+ GK L++R+N
Sbjct: 61 GRNPKTGDKVELDGKYVPHFKPGKELRDRVN 91
>gi|90410785|ref|ZP_01218800.1| putative bacterial nucleoid DNA-binding protein [Photobacterium
profundum 3TCK]
gi|90328416|gb|EAS44714.1| putative bacterial nucleoid DNA-binding protein [Photobacterium
profundum 3TCK]
Length = 91
Score = 109 bits (272), Expect = 2e-22, Method: Composition-based stats.
Identities = 30/91 (32%), Positives = 53/91 (58%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ L+ IA+ + ++ + ++ ++ ++ L +G +V + GFG+FSVR+RAAR
Sbjct: 1 MNKTQLVDKIAE-SADISKASAGRALDAFIDAVSGTLKDGDQVALVGFGTFSVRERAART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + I + VP F+ GK LK+ +N
Sbjct: 60 GRNPQTGEEIQIAAAKVPGFKPGKALKDSVN 90
>gi|330994450|ref|ZP_08318375.1| Integration host factor subunit beta [Gluconacetobacter sp.
SXCC-1]
gi|329758450|gb|EGG74969.1| Integration host factor subunit beta [Gluconacetobacter sp.
SXCC-1]
Length = 105
Score = 109 bits (272), Expect = 2e-22, Method: Composition-based stats.
Identities = 45/91 (49%), Positives = 65/91 (71%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M +S LI +A P L ++VE+IV ++ E++ AL G RVE+RGFG+F+V+KR AR
Sbjct: 8 MTRSELIAELAAARPHLPVREVERIVQVIFAEVSNALMRGDRVELRGFGAFTVKKRDART 67
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + +SV+EK+VPFF+AGK L+ER+N
Sbjct: 68 GRNPRTGETVSVDEKVVPFFKAGKELRERVN 98
>gi|323136116|ref|ZP_08071199.1| integration host factor, beta subunit [Methylocystis sp. ATCC
49242]
gi|322399207|gb|EFY01726.1| integration host factor, beta subunit [Methylocystis sp. ATCC
49242]
Length = 96
Score = 109 bits (272), Expect = 2e-22, Method: Composition-based stats.
Identities = 52/93 (55%), Positives = 67/93 (72%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
MIKS LI IA++N L +DVE IV+ +L+E+T ALA G RVE+RGFG+FSV+KR AR
Sbjct: 1 MIKSELIQRIARRNGHLYQRDVETIVSTILDEITAALARGDRVELRGFGAFSVKKRDART 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSP 93
R P +SV+EK VPFF+ GK ++ERLN
Sbjct: 61 GRNPRTGAQVSVQEKSVPFFKTGKEMRERLNEN 93
>gi|323498284|ref|ZP_08103286.1| integration host factor subunit beta [Vibrio sinaloensis DSM
21326]
gi|323316712|gb|EGA69721.1| integration host factor subunit beta [Vibrio sinaloensis DSM
21326]
Length = 93
Score = 109 bits (272), Expect = 2e-22, Method: Composition-based stats.
Identities = 38/91 (41%), Positives = 54/91 (59%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI + + L+ +++E V +LE M L +G R+EIRGFGSFS+ R R+
Sbjct: 1 MTKSELIERLCAEQTHLSAKEIEDAVKDILEHMASTLESGDRIEIRGFGSFSLHFREPRV 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + +E K VP F+ GK L+ER+N
Sbjct: 61 GRNPKTGDKVELEGKYVPHFKPGKELRERVN 91
>gi|239831002|ref|ZP_04679331.1| integration host factor, beta subunit [Ochrobactrum intermedium LMG
3301]
gi|239823269|gb|EEQ94837.1| integration host factor, beta subunit [Ochrobactrum intermedium LMG
3301]
Length = 120
Score = 109 bits (272), Expect = 2e-22, Method: Composition-based stats.
Identities = 48/89 (53%), Positives = 62/89 (69%)
Query: 3 KSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLAR 62
KS L+ IA +NP L +DVE IV + +E+T ALA G RVE+RGFG+FSV+ R AR R
Sbjct: 29 KSELVQIIASRNPHLFQRDVENIVGAVFDEITNALAEGNRVELRGFGAFSVKNRPARSGR 88
Query: 63 APLAQKVISVEEKMVPFFRAGKNLKERLN 91
P + + VEEK VPFF+ GK L++RLN
Sbjct: 89 NPRTGETVDVEEKWVPFFKTGKELRDRLN 117
>gi|237808313|ref|YP_002892753.1| integration host factor, beta subunit [Tolumonas auensis DSM
9187]
gi|259492039|sp|C4LF00|IHFB_TOLAT RecName: Full=Integration host factor subunit beta;
Short=IHF-beta
gi|237500574|gb|ACQ93167.1| integration host factor, beta subunit [Tolumonas auensis DSM
9187]
Length = 93
Score = 108 bits (271), Expect = 2e-22, Method: Composition-based stats.
Identities = 41/92 (44%), Positives = 55/92 (59%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI ++ L +DVE V +LE M L +G R+EIRGFGSFS+ RA R+
Sbjct: 1 MTKSDLIERLSSSQQHLAAKDVEAAVREILECMAATLESGNRIEIRGFGSFSLHYRAPRV 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P + + + K VP F+ GK L+ER+NS
Sbjct: 61 GRNPKTGEKVELLAKSVPHFKPGKELRERVNS 92
>gi|149912348|ref|ZP_01900906.1| putative integration host factor, beta subunit [Moritella sp.
PE36]
gi|149804574|gb|EDM64647.1| putative integration host factor, beta subunit [Moritella sp.
PE36]
Length = 94
Score = 108 bits (271), Expect = 2e-22, Method: Composition-based stats.
Identities = 40/92 (43%), Positives = 58/92 (63%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI + N +L +DVE V +L++M LA G R+EIRGFGSFS+ R R+
Sbjct: 1 MTKSELIERLCTANSQLATKDVELSVKAILDQMVDTLATGDRIEIRGFGSFSLHYREPRI 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P + + + +E K VP F+ GK L++R+N+
Sbjct: 61 GRNPKSGEKVELEGKYVPHFKPGKELRDRVNA 92
>gi|260768939|ref|ZP_05877873.1| integration host factor beta subunit [Vibrio furnissii CIP
102972]
gi|260616969|gb|EEX42154.1| integration host factor beta subunit [Vibrio furnissii CIP
102972]
gi|315180635|gb|ADT87549.1| integration host factor subunit beta [Vibrio furnissii NCTC
11218]
Length = 94
Score = 108 bits (271), Expect = 2e-22, Method: Composition-based stats.
Identities = 38/93 (40%), Positives = 54/93 (58%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI + + L+ +++E V +LE M L G R+EIRGFGSFS+ R R+
Sbjct: 1 MTKSELIERLCAEQTHLSAKEIEDAVKDILEHMANTLEAGDRIEIRGFGSFSLHYREPRV 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSP 93
R P + + +E K VP F+ GK L+ER+N
Sbjct: 61 GRNPKTGEKVELEGKFVPHFKPGKELRERVNEN 93
>gi|56552697|ref|YP_163536.1| integration host factor subunit beta [Zymomonas mobilis subsp.
mobilis ZM4]
gi|241762613|ref|ZP_04760686.1| integration host factor, beta subunit [Zymomonas mobilis subsp.
mobilis ATCC 10988]
gi|260753662|ref|YP_003226555.1| integration host factor subunit beta [Zymomonas mobilis subsp.
mobilis NCIMB 11163]
gi|56544271|gb|AAV90425.1| integration host factor, beta subunit [Zymomonas mobilis subsp.
mobilis ZM4]
gi|241372808|gb|EER62512.1| integration host factor, beta subunit [Zymomonas mobilis subsp.
mobilis ATCC 10988]
gi|258553025|gb|ACV75971.1| integration host factor, beta subunit [Zymomonas mobilis subsp.
mobilis NCIMB 11163]
Length = 94
Score = 108 bits (271), Expect = 2e-22, Method: Composition-based stats.
Identities = 45/91 (49%), Positives = 64/91 (70%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
MI+S LI T+A NP+L+ +++E I+++ + +T LA GGRVEIRGFG+FS R R ARL
Sbjct: 1 MIRSELIQTLANDNPELSSEEIEHIIDVFFDGITHHLAKGGRVEIRGFGAFSTRFRDARL 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + + VE K VP+F+ GK ++E LN
Sbjct: 61 GRNPRTGEKVEVEAKRVPYFKPGKEIREHLN 91
>gi|71278799|ref|YP_269056.1| integration host factor subunit beta [Colwellia psychrerythraea
34H]
gi|123761027|sp|Q482G2|IHFB_COLP3 RecName: Full=Integration host factor subunit beta;
Short=IHF-beta
gi|71144539|gb|AAZ25012.1| integration host factor, beta subunit [Colwellia psychrerythraea
34H]
Length = 95
Score = 108 bits (271), Expect = 2e-22, Method: Composition-based stats.
Identities = 42/91 (46%), Positives = 59/91 (64%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI +A K L+ ++VEK + +LE M Q+L+ G R+EIRGFGSFS+ RA R+
Sbjct: 1 MTKSELIEKLADKLSHLSAKEVEKSIKEILELMAQSLSKGERIEIRGFGSFSLHYRAPRV 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + + + K VP F+ GK L+ER+N
Sbjct: 61 GRNPKTGESVELSGKYVPHFKPGKELRERVN 91
>gi|78485543|ref|YP_391468.1| integration host factor, beta subunit [Thiomicrospira crunogena
XCL-2]
gi|78363829|gb|ABB41794.1| integration host factor, beta subunit [Thiomicrospira crunogena
XCL-2]
Length = 108
Score = 108 bits (271), Expect = 2e-22, Method: Composition-based stats.
Identities = 41/95 (43%), Positives = 61/95 (64%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI IA+K + + +DVE +N +L+ M L+ G R+EIRGFGSFS+ R ARL
Sbjct: 8 MTKSELIELIARKQTQFSQKDVELAINQILDSMIDTLSEGDRIEIRGFGSFSLHHRKARL 67
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDS 95
R P + + + EK VP F+ GK+L++R+++
Sbjct: 68 GRNPKTGEKVELSEKRVPHFKPGKSLRDRVDASKD 102
>gi|89069006|ref|ZP_01156387.1| integration host factor beta subunit [Oceanicola granulosus
HTCC2516]
gi|89045375|gb|EAR51440.1| integration host factor beta subunit [Oceanicola granulosus
HTCC2516]
Length = 93
Score = 108 bits (271), Expect = 2e-22, Method: Composition-based stats.
Identities = 50/93 (53%), Positives = 66/93 (70%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
MI+S LI IA NP L +DVEKIVN + + + A+ANG RVE+RGFG+FSV++R AR+
Sbjct: 1 MIRSELIQKIADDNPHLYQRDVEKIVNTVFDRIIGAMANGDRVELRGFGAFSVKRREARM 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSP 93
R P + + VEEK VPFF+ GK L++RLN
Sbjct: 61 GRNPRTGEAVEVEEKHVPFFKTGKLLRDRLNDK 93
>gi|285018379|ref|YP_003376090.1| integration host factor beta-subunit (ihf-beta) protein
[Xanthomonas albilineans GPE PC73]
gi|283473597|emb|CBA16100.1| integration host factor beta-subunit (ihf-beta) protein
[Xanthomonas albilineans]
Length = 101
Score = 108 bits (271), Expect = 2e-22, Method: Composition-based stats.
Identities = 42/90 (46%), Positives = 55/90 (61%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI +A+K L DV+ V LLE M AL+ G R+EIRGFGSFS+ R RL
Sbjct: 1 MTKSELIEILARKQVHLKSDDVDLAVKSLLEMMGGALSGGERIEIRGFGSFSLHYRPPRL 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P + +++ K VP F+ GK L+ER+
Sbjct: 61 GRNPKTGESVALPGKHVPHFKPGKELRERV 90
>gi|271500809|ref|YP_003333834.1| integration host factor subunit beta [Dickeya dadantii Ech586]
gi|307130807|ref|YP_003882823.1| integration host factor (IHF), DNA-binding protein, subunit beta
[Dickeya dadantii 3937]
gi|585307|sp|P37983|IHFB_DICD3 RecName: Full=Integration host factor subunit beta;
Short=IHF-beta
gi|399670|emb|CAA52770.1| integration host factor beta subunit [Erwinia chrysanthemi]
gi|270344364|gb|ACZ77129.1| integration host factor, beta subunit [Dickeya dadantii Ech586]
gi|306528336|gb|ADM98266.1| integration host factor (IHF), DNA-binding protein, beta subunit
[Dickeya dadantii 3937]
gi|1093153|prf||2103145B integration host factor
Length = 94
Score = 108 bits (271), Expect = 2e-22, Method: Composition-based stats.
Identities = 40/91 (43%), Positives = 56/91 (61%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI +A + + + VE V +LE+M LA+G R+EIRGFGSFS+ RA R+
Sbjct: 1 MTKSELIERLAGQQSHIPAKVVEDAVKEMLEQMATTLASGDRIEIRGFGSFSLHYRAPRV 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + + +E K VP F+ GK L++R N
Sbjct: 61 GRNPKTGEKVELEGKYVPHFKPGKELRDRAN 91
>gi|319943162|ref|ZP_08017445.1| integration host factor beta subunit [Lautropia mirabilis ATCC
51599]
gi|319743704|gb|EFV96108.1| integration host factor beta subunit [Lautropia mirabilis ATCC
51599]
Length = 116
Score = 108 bits (271), Expect = 2e-22, Method: Composition-based stats.
Identities = 37/91 (40%), Positives = 61/91 (67%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI +A++ P+L +D E V +L+ M ++LA+ R+EIRGFG+F++ R +R+
Sbjct: 18 MTKSELIAKLAERFPQLVAKDAEYAVRTILDAMARSLADRHRIEIRGFGTFALSHRHSRM 77
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + + + V EK+VP F+ GK L+E ++
Sbjct: 78 GRNPKSGEPVPVPEKLVPHFKPGKQLRESVD 108
>gi|319786988|ref|YP_004146463.1| integration host factor subunit beta [Pseudoxanthomonas
suwonensis 11-1]
gi|317465500|gb|ADV27232.1| integration host factor, beta subunit [Pseudoxanthomonas
suwonensis 11-1]
Length = 103
Score = 108 bits (271), Expect = 2e-22, Method: Composition-based stats.
Identities = 40/90 (44%), Positives = 58/90 (64%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI +A++ L +DV+ V LLE M +LA+G R+EIRGFGSFS+ R R+
Sbjct: 1 MTKSELIEILARRQSHLKAEDVDLAVKSLLEMMAGSLASGERIEIRGFGSFSLHYRPPRI 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P + +++ K VP F+AGK L+E++
Sbjct: 61 GRNPKTGESVALPGKHVPHFKAGKELREKV 90
>gi|156934598|ref|YP_001438514.1| integration host factor subunit beta [Cronobacter sakazakii ATCC
BAA-894]
gi|156532852|gb|ABU77678.1| hypothetical protein ESA_02432 [Cronobacter sakazakii ATCC
BAA-894]
Length = 100
Score = 108 bits (271), Expect = 2e-22, Method: Composition-based stats.
Identities = 40/91 (43%), Positives = 53/91 (58%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI +A ++ + + VE V +LE M LA G R+EIRGFGSFS+ RA R
Sbjct: 7 MTKSELIERLASQHSHIPAKAVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 66
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + +E K VP F+ GK L++R N
Sbjct: 67 GRNPKTGDKVELEGKYVPHFKPGKELRDRAN 97
>gi|163849633|ref|YP_001637676.1| integration host factor, beta subunit [Methylobacterium
extorquens PA1]
gi|218528183|ref|YP_002418999.1| integration host factor subunit beta [Methylobacterium
chloromethanicum CM4]
gi|254558707|ref|YP_003065802.1| integration host factor [Methylobacterium extorquens DM4]
gi|163661238|gb|ABY28605.1| integration host factor, beta subunit [Methylobacterium
extorquens PA1]
gi|218520486|gb|ACK81071.1| integration host factor, beta subunit [Methylobacterium
chloromethanicum CM4]
gi|254265985|emb|CAX21735.1| integration host factor (IHF), beta subunit, site-specific
recombination [Methylobacterium extorquens DM4]
Length = 102
Score = 108 bits (271), Expect = 3e-22, Method: Composition-based stats.
Identities = 45/91 (49%), Positives = 64/91 (70%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
MIKS L+ IA++NP L +DVE +VN +L+ + ALA G RVE+RGFG+FSV++R AR
Sbjct: 1 MIKSELVLKIAEQNPHLYQRDVETLVNAILDTIADALAQGDRVELRGFGAFSVKRREARR 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + ++V EK +P F+ GK ++ RLN
Sbjct: 61 GRNPRTGESVAVSEKAIPVFKTGKEMRLRLN 91
>gi|225626692|ref|ZP_03784731.1| integration host factor, beta subunit [Brucella ceti str. Cudo]
gi|306842560|ref|ZP_07475211.1| integration host factor, beta subunit [Brucella sp. BO2]
gi|225618349|gb|EEH15392.1| integration host factor, beta subunit [Brucella ceti str. Cudo]
gi|306287416|gb|EFM58896.1| integration host factor, beta subunit [Brucella sp. BO2]
Length = 117
Score = 108 bits (271), Expect = 3e-22, Method: Composition-based stats.
Identities = 48/89 (53%), Positives = 62/89 (69%)
Query: 3 KSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLAR 62
KS L+ IA +NP L +DVE IV + +E+T ALA G RVE+RGFG+FSV+ R AR R
Sbjct: 26 KSELVQIIASRNPHLFQRDVENIVGAVFDEITNALAEGNRVELRGFGAFSVKNRPARSGR 85
Query: 63 APLAQKVISVEEKMVPFFRAGKNLKERLN 91
P + + VEEK VPFF+ GK L++RLN
Sbjct: 86 NPRTGETVDVEEKWVPFFKTGKELRDRLN 114
>gi|85709918|ref|ZP_01040983.1| integration host factor beta-subunit [Erythrobacter sp. NAP1]
gi|85688628|gb|EAQ28632.1| integration host factor beta-subunit [Erythrobacter sp. NAP1]
Length = 93
Score = 108 bits (271), Expect = 3e-22, Method: Composition-based stats.
Identities = 43/93 (46%), Positives = 64/93 (68%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
MI+S L+ + K NP+L ++VE++V++ +E++Q LA GGRVE+RGFG+FS R R AR
Sbjct: 1 MIRSELLTELHKDNPELRSEEVEQVVDIFFDEISQRLAEGGRVELRGFGAFSTRDREART 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSP 93
R P + + V K VP+F+AGK ++ RLN
Sbjct: 61 GRNPRTGEAVEVPAKRVPYFKAGKEIRNRLNED 93
>gi|239995520|ref|ZP_04716044.1| histone-like DNA-binding protein [Alteromonas macleodii ATCC
27126]
gi|332141941|ref|YP_004427679.1| histone-like DNA-binding protein [Alteromonas macleodii str.
'Deep ecotype']
gi|327551963|gb|AEA98681.1| histone-like DNA-binding protein [Alteromonas macleodii str.
'Deep ecotype']
gi|332992310|gb|AEF02365.1| histone-like DNA-binding protein [Alteromonas sp. SN2]
Length = 90
Score = 108 bits (270), Expect = 3e-22, Method: Composition-based stats.
Identities = 34/91 (37%), Positives = 51/91 (56%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI IA ++ + ++ + +T AL +G +V + GFG+FSVR+R+AR
Sbjct: 1 MNKSQLIDQIAA-GADISKAAAGRALDAFTDSVTAALKDGDQVALVGFGTFSVRERSARS 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + I + VP F+AGK LK+ N
Sbjct: 60 GRNPQTGETIQISAAKVPSFKAGKALKDACN 90
>gi|237730875|ref|ZP_04561356.1| integration host factor subunit beta [Citrobacter sp. 30_2]
gi|283833797|ref|ZP_06353538.1| integration host factor, beta subunit [Citrobacter youngae ATCC
29220]
gi|226906414|gb|EEH92332.1| integration host factor subunit beta [Citrobacter sp. 30_2]
gi|291070462|gb|EFE08571.1| integration host factor, beta subunit [Citrobacter youngae ATCC
29220]
Length = 94
Score = 108 bits (270), Expect = 3e-22, Method: Composition-based stats.
Identities = 41/91 (45%), Positives = 53/91 (58%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI +A + P + + VE V +LE M LA G R+EIRGFGSFS+ RA R
Sbjct: 1 MTKSELIERLATQQPHIPAKAVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + +E K VP F+ GK L++R N
Sbjct: 61 GRNPKTGDKVDLEGKYVPHFKPGKELRDRAN 91
>gi|294635327|ref|ZP_06713824.1| DNA-binding protein HU-beta [Edwardsiella tarda ATCC 23685]
gi|291091303|gb|EFE23864.1| DNA-binding protein HU-beta [Edwardsiella tarda ATCC 23685]
Length = 90
Score = 108 bits (270), Expect = 3e-22, Method: Composition-based stats.
Identities = 35/91 (38%), Positives = 51/91 (56%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI IA+ ++ + ++ + +T++L G V + GFG+F VR+RAAR
Sbjct: 1 MNKSQLIDKIAE-GADISKAAAGRALDAFIASVTESLQQGDAVALVGFGTFDVRERAART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P K I + VP FRAGK LK+ +N
Sbjct: 60 GRNPQTGKEIEISAAKVPGFRAGKALKDAVN 90
>gi|10955165|ref|NP_059821.1| hypothetical protein pTi_149 [Agrobacterium tumefaciens]
gi|61226436|sp|P0A3I1|IHFB_AGRTU RecName: Full=Integration host factor subunit beta;
Short=IHF-beta
gi|61226439|sp|P0A3I2|IHFB_AGRT9 RecName: Full=Integration host factor subunit beta;
Short=IHF-beta
gi|2773264|gb|AAC72021.1| ysa [Agrobacterium tumefaciens]
gi|11124690|emb|CAC15177.1| IHF beta subunit-like protein [Agrobacterium tumefaciens]
Length = 102
Score = 108 bits (270), Expect = 3e-22, Method: Composition-based stats.
Identities = 48/96 (50%), Positives = 66/96 (68%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
MIKS L+ +A KNP L+ +D E V+ +L+E+T AL G RV+IR FG+F VR R AR
Sbjct: 1 MIKSELVDFVAAKNPYLHRRDAENAVDAVLDEITGALERGERVDIRSFGTFVVRHRPARS 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDST 96
R PL + +EEK VPFFRAGK +++RLN+ + +
Sbjct: 61 GRNPLNGNAVFIEEKWVPFFRAGKEIRDRLNTAEKS 96
>gi|312882499|ref|ZP_07742240.1| integration host factor subunit beta [Vibrio caribbenthicus ATCC
BAA-2122]
gi|309369899|gb|EFP97410.1| integration host factor subunit beta [Vibrio caribbenthicus ATCC
BAA-2122]
Length = 92
Score = 108 bits (270), Expect = 3e-22, Method: Composition-based stats.
Identities = 37/91 (40%), Positives = 53/91 (58%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI + + L+ +++E V +LE M L G R+EIRGFGSFS+ R R+
Sbjct: 1 MTKSELIERLCAEQTHLSAKEIEDAVKDILEHMASTLEGGDRIEIRGFGSFSLHFREPRV 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + ++ K VP F+ GK L+ER+N
Sbjct: 61 GRNPKTGDKVDLDGKYVPHFKPGKELRERVN 91
>gi|194333137|ref|YP_002014997.1| histone family protein DNA-binding protein [Prosthecochloris
aestuarii DSM 271]
gi|194310955|gb|ACF45350.1| histone family protein DNA-binding protein [Prosthecochloris
aestuarii DSM 271]
Length = 94
Score = 108 bits (270), Expect = 3e-22, Method: Composition-based stats.
Identities = 33/92 (35%), Positives = 50/92 (54%), Gaps = 1/92 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ L+ IA + L D E+ VN + +T +L G V + GFG+FSV +RA R
Sbjct: 4 MSKAELVEKIASQ-AGLTKADAERAVNSFVSVVTDSLKAGEDVTLVGFGTFSVGERAERQ 62
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P + I++ + F+ GK LKE ++S
Sbjct: 63 GRNPQTGETITIAARKAVKFKPGKALKEEVDS 94
>gi|304311293|ref|YP_003810891.1| Histone-like bacterial dna-binding protein [gamma proteobacterium
HdN1]
gi|301797026|emb|CBL45239.1| Histone-like bacterial dna-binding protein [gamma proteobacterium
HdN1]
Length = 91
Score = 108 bits (270), Expect = 3e-22, Method: Composition-based stats.
Identities = 31/91 (34%), Positives = 49/91 (53%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI IA + + + ++ ++ +T AL +V + GFG+FSV+ RAAR
Sbjct: 1 MNKSELIDAIAA-SADIPKAQASRALDAVITSVTDALKKDEQVALVGFGTFSVKDRAARS 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + I + +P F+ GK LK+ +N
Sbjct: 60 GRNPQTGETIDIPAAKIPSFKPGKALKDAVN 90
>gi|239831863|ref|ZP_04680192.1| DNA-binding protein HRL18 [Ochrobactrum intermedium LMG 3301]
gi|239824130|gb|EEQ95698.1| DNA-binding protein HRL18 [Ochrobactrum intermedium LMG 3301]
Length = 93
Score = 108 bits (270), Expect = 3e-22, Method: Composition-based stats.
Identities = 35/91 (38%), Positives = 49/91 (53%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ L+ +A+K L D V+ +L +T AL G V + GFG FSV RAA
Sbjct: 3 MNKNELVAAVAEK-GGLTKADAGTAVDAVLAAVTGALKAGEEVRLPGFGVFSVSHRAAST 61
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P K +++ + VP F AGK LK+ +N
Sbjct: 62 GRNPSTGKEVAIPARNVPKFSAGKGLKDAVN 92
>gi|260773186|ref|ZP_05882102.1| integration host factor beta subunit [Vibrio metschnikovii CIP
69.14]
gi|260612325|gb|EEX37528.1| integration host factor beta subunit [Vibrio metschnikovii CIP
69.14]
Length = 94
Score = 108 bits (270), Expect = 3e-22, Method: Composition-based stats.
Identities = 38/93 (40%), Positives = 56/93 (60%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI + L+ +++E V +LE M++ L +G R+EIRGFGSFS+ R R+
Sbjct: 1 MTKSELIERLCAVQTHLSAKEIEDAVKDVLEHMSKTLEDGERIEIRGFGSFSLHYREPRI 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSP 93
R P + + +E K VP F+ GK L+ER+N
Sbjct: 61 GRNPKTGEKVELEGKYVPHFKPGKELRERVNQN 93
>gi|254294703|ref|YP_003060726.1| integration host factor subunit beta [Hirschia baltica ATCC
49814]
gi|254043234|gb|ACT60029.1| integration host factor, beta subunit [Hirschia baltica ATCC
49814]
Length = 99
Score = 108 bits (270), Expect = 3e-22, Method: Composition-based stats.
Identities = 44/95 (46%), Positives = 70/95 (73%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M++S LI ++++ P++ ++VE+IV+++L+E+ AL G RVE+RGFG+FSVR+R AR
Sbjct: 1 MLRSELILRLSEERPEIRPREVERIVDVILDEIAAALEAGDRVELRGFGAFSVRQREART 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDS 95
R P + + VE+K VPFF+AGK L+ RLN+ +
Sbjct: 61 GRNPRTGESVPVEQKFVPFFKAGKELRARLNNGED 95
>gi|253996886|ref|YP_003048950.1| integration host factor subunit beta [Methylotenera mobilis JLW8]
gi|253983565|gb|ACT48423.1| integration host factor, beta subunit [Methylotenera mobilis
JLW8]
Length = 93
Score = 108 bits (270), Expect = 3e-22, Method: Composition-based stats.
Identities = 43/91 (47%), Positives = 58/91 (63%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI +A++ P+L +D E V +L+ M+ LA G R+EIRGFGSFS+ R RL
Sbjct: 1 MTKSELITLLAERFPQLVMKDAELSVKAILDAMSDNLATGERIEIRGFGSFSLNYRPPRL 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + V EK VP F+AGK L+ER++
Sbjct: 61 GRNPKTGSKVEVPEKHVPHFKAGKELRERVD 91
>gi|260597310|ref|YP_003209881.1| integration host factor subunit beta [Cronobacter turicensis
z3032]
gi|260216487|emb|CBA29645.1| Integration host factor subunit beta [Cronobacter turicensis
z3032]
Length = 94
Score = 108 bits (270), Expect = 3e-22, Method: Composition-based stats.
Identities = 40/91 (43%), Positives = 53/91 (58%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI +A ++ + + VE V +LE M LA G R+EIRGFGSFS+ RA R
Sbjct: 1 MTKSELIERLASQHSHIPAKAVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + +E K VP F+ GK L++R N
Sbjct: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRAN 91
>gi|238919015|ref|YP_002932529.1| DNA-binding protein HU-beta [Edwardsiella ictaluri 93-146]
gi|238868583|gb|ACR68294.1| DNA-binding protein HU-beta [Edwardsiella ictaluri 93-146]
Length = 90
Score = 108 bits (270), Expect = 3e-22, Method: Composition-based stats.
Identities = 34/91 (37%), Positives = 52/91 (57%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI IA+ ++ + ++ + +T+++ G V + GFG+F VR+RAAR
Sbjct: 1 MNKSQLIDKIAE-GADISKAAAGRALDAFIASVTESVQEGDAVALVGFGTFDVRERAART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P K I++ VP FRAGK LK+ +N
Sbjct: 60 GRNPQTGKEINIPAAKVPGFRAGKALKDAVN 90
>gi|257074499|ref|YP_003162896.1| integration host factor, beta subunit [Candidatus Accumulibacter
phosphatis clade IIA str. UW-1]
gi|257048720|gb|ACV37905.1| integration host factor, beta subunit [Candidatus Accumulibacter
phosphatis clade IIA str. UW-1]
Length = 95
Score = 108 bits (270), Expect = 3e-22, Method: Composition-based stats.
Identities = 41/95 (43%), Positives = 55/95 (57%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M +S LI I ++ L +DVE V + E MT+ LANG R+EIRGFGSF + R R+
Sbjct: 1 MTRSELIAQITARSAALTVKDVETAVKAIFEGMTETLANGERIEIRGFGSFRLAYRPPRI 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDS 95
R P+ + V K VP F+AG+ L R+NS
Sbjct: 61 GRNPMTGDTVPVPAKAVPHFKAGRELAARVNSDKG 95
>gi|332534572|ref|ZP_08410407.1| integration host factor beta subunit [Pseudoalteromonas
haloplanktis ANT/505]
gi|332035992|gb|EGI72471.1| integration host factor beta subunit [Pseudoalteromonas
haloplanktis ANT/505]
Length = 95
Score = 108 bits (270), Expect = 3e-22, Method: Composition-based stats.
Identities = 39/92 (42%), Positives = 57/92 (61%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI +A+++ + +DVE V +LE+M +L+ R+EIRGFGSFS+ RA R
Sbjct: 1 MTKSELIEILAEQHAHVPVKDVENAVKEILEQMAGSLSTSDRIEIRGFGSFSLHFRAPRT 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P + +E K VP F+ GK L++R+N
Sbjct: 61 GRNPKTGDTVELEGKHVPHFKPGKELRDRVNE 92
>gi|330720371|gb|EGG98704.1| Integration host factor beta subunit [gamma proteobacterium
IMCC2047]
Length = 98
Score = 108 bits (270), Expect = 3e-22, Method: Composition-based stats.
Identities = 40/98 (40%), Positives = 61/98 (62%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI IA + +L+ +DVE V +++ MTQ+L++G R+EIRGFGSFS+ RA R
Sbjct: 1 MTKSELIENIAAQQTQLSIKDVELSVKTIIDMMTQSLSSGERIEIRGFGSFSLHYRAPRT 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDSTLS 98
R P + + K VP F+ GK+L+E+++ +
Sbjct: 61 GRNPKTGDQVQLTGKYVPHFKPGKDLREQVDESRENGN 98
>gi|15613872|ref|NP_242175.1| non-specific DNA-binding protein II (HB) (HU) [Bacillus
halodurans C-125]
gi|14194649|sp|Q9KDA5|DBH1_BACHD RecName: Full=DNA-binding protein HU-1
gi|10173925|dbj|BAB05028.1| non-specific DNA-binding protein II (HB) (HU) [Bacillus
halodurans C-125]
Length = 90
Score = 108 bits (270), Expect = 3e-22, Method: Composition-based stats.
Identities = 36/91 (39%), Positives = 56/91 (61%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI +A++ +L+ +D K V+ + E +T AL GG+V++ GFGSF VR+R+AR
Sbjct: 1 MNKTDLINAVAEQ-AELSKKDASKAVDAVFESITGALKEGGKVQLVGFGSFEVRERSARK 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + I + P F+ GK LK+ +N
Sbjct: 60 GRNPQTGEEIEIPATKNPAFKPGKQLKDAVN 90
>gi|153009533|ref|YP_001370748.1| histone family DNA-binding protein [Ochrobactrum anthropi ATCC
49188]
gi|151561421|gb|ABS14919.1| histone family protein DNA-binding protein [Ochrobactrum anthropi
ATCC 49188]
Length = 91
Score = 108 bits (270), Expect = 3e-22, Method: Composition-based stats.
Identities = 35/91 (38%), Positives = 49/91 (53%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ L+ +A+K L D V+ +L +T AL G V + GFG FSV RAA
Sbjct: 1 MNKNELVAAVAEK-GGLTKADAGTAVDAVLAAVTGALKAGEEVRLPGFGVFSVSHRAAST 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P K +++ + VP F AGK LK+ +N
Sbjct: 60 GRNPSTGKEVAIPARNVPKFSAGKGLKDAVN 90
>gi|310767180|gb|ADP12130.1| integration host factor subunit beta [Erwinia sp. Ejp617]
Length = 95
Score = 107 bits (269), Expect = 3e-22, Method: Composition-based stats.
Identities = 38/92 (41%), Positives = 54/92 (58%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI +A + P + + +E V +LE M L+ G R+E+RGFGSFS+ RA R
Sbjct: 1 MTKSELIERLACQQPHIQAKVLEDAVKEMLEHMATTLSEGERIEVRGFGSFSLHYRAPRT 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P + +E K VP F+ GK L++R N+
Sbjct: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRANN 92
>gi|85058972|ref|YP_454674.1| integration host factor subunit beta [Sodalis glossinidius str.
'morsitans']
gi|123766455|sp|Q2NUA6|IHFB_SODGM RecName: Full=Integration host factor subunit beta;
Short=IHF-beta
gi|84779492|dbj|BAE74269.1| integration host factor beta-subunit [Sodalis glossinidius str.
'morsitans']
Length = 94
Score = 107 bits (269), Expect = 3e-22, Method: Composition-based stats.
Identities = 40/91 (43%), Positives = 55/91 (60%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI +A ++ + + VE V +LE M LA+G R+EIRGFGSFS+ RA R+
Sbjct: 1 MTKSELIERLAGQHAHIQAKVVEDAVKEMLEHMATTLASGERIEIRGFGSFSLHYRAPRI 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + +E K VP F+ GK L++R N
Sbjct: 61 GRNPKTGDRVELEGKYVPHFKPGKELRDRAN 91
>gi|121602248|ref|YP_989618.1| integration host factor subunit beta [Bartonella bacilliformis
KC583]
gi|120614425|gb|ABM45026.1| integration host factor, beta subunit [Bartonella bacilliformis
KC583]
Length = 92
Score = 107 bits (269), Expect = 3e-22, Method: Composition-based stats.
Identities = 50/92 (54%), Positives = 66/92 (71%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
MIKS LI IA++NP L +DVE IVN + EE++ ALA G R+E+RGFG+FSV+ R+AR
Sbjct: 1 MIKSELIQIIARRNPHLLQRDVENIVNTVFEEISIALAKGHRIELRGFGAFSVKNRSARN 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P + + VEEK VP F+ GK L++RLN
Sbjct: 61 GRNPRTGETVMVEEKWVPSFKTGKELRDRLNQ 92
>gi|82703188|ref|YP_412754.1| integration host factor, beta subunit [Nitrosospira multiformis
ATCC 25196]
gi|123740640|sp|Q2Y7A9|IHFB_NITMU RecName: Full=Integration host factor subunit beta;
Short=IHF-beta
gi|82411253|gb|ABB75362.1| integration host factor, beta subunit [Nitrosospira multiformis
ATCC 25196]
Length = 94
Score = 107 bits (269), Expect = 4e-22, Method: Composition-based stats.
Identities = 39/94 (41%), Positives = 62/94 (65%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI +A ++P+L +D E V ++L+ M ++L+ G R+EIRGFGSF + R R+
Sbjct: 1 MTKSELIARLAARHPQLGTKDAELAVKVILDAMAKSLSQGQRIEIRGFGSFDLNYRPPRV 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSPD 94
R P + + + V EK VP F+AGK ++ER++ +
Sbjct: 61 GRNPKSGEKVRVPEKYVPHFKAGKEMRERVDQKN 94
>gi|292487472|ref|YP_003530344.1| transcriptional regulator HU subunit beta [Erwinia amylovora
CFBP1430]
gi|292898714|ref|YP_003538083.1| DNA-binding protein HU-beta [Erwinia amylovora ATCC 49946]
gi|291198562|emb|CBJ45670.1| DNA-binding protein HU-beta [Erwinia amylovora ATCC 49946]
gi|291552891|emb|CBA19936.1| transcriptional regulator HU subunit beta [Erwinia amylovora
CFBP1430]
gi|312171577|emb|CBX79835.1| transcriptional regulator HU subunit beta [Erwinia amylovora ATCC
BAA-2158]
Length = 90
Score = 107 bits (269), Expect = 4e-22, Method: Composition-based stats.
Identities = 35/91 (38%), Positives = 54/91 (59%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI IA + ++ ++++ + +T++L G V + GFG+FSVR+RA R+
Sbjct: 1 MNKSQLIDKIAAE-ADISKAAAGRVLDAFIGSVTESLQAGDEVALVGFGTFSVRERAERV 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P K I++ VP FRAGK LK+ +N
Sbjct: 60 GRNPQTGKEITIAAGKVPGFRAGKALKDAVN 90
>gi|49473700|ref|YP_031742.1| integration host factor subunit beta [Bartonella quintana str.
Toulouse]
gi|49239203|emb|CAF25520.1| Integration host factor beta-subunit [Bartonella quintana str.
Toulouse]
Length = 92
Score = 107 bits (269), Expect = 4e-22, Method: Composition-based stats.
Identities = 50/92 (54%), Positives = 68/92 (73%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M+KS L+ IA+ NP L +DVE IVN + EE++ ALANG RVE+RGFG+FSV+ R+AR
Sbjct: 1 MVKSELVQIIARHNPHLFQRDVENIVNAIFEEISTALANGNRVELRGFGAFSVKSRSARN 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P + + VEEK +PFF+ GK+L++RLN
Sbjct: 61 GRNPRTGETVMVEEKWIPFFKTGKDLRDRLNQ 92
>gi|83951656|ref|ZP_00960388.1| integration host factor, beta subunit [Roseovarius nubinhibens
ISM]
gi|83836662|gb|EAP75959.1| integration host factor, beta subunit [Roseovarius nubinhibens
ISM]
Length = 94
Score = 107 bits (269), Expect = 4e-22, Method: Composition-based stats.
Identities = 52/93 (55%), Positives = 66/93 (70%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
MI+S LI IA +NP L +DVEKIVN + E+T A+A G RVE+RGFG+FSV+KR AR
Sbjct: 1 MIRSELIQKIADENPHLFQRDVEKIVNTIFNEITDAMAKGNRVELRGFGAFSVKKRDARK 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSP 93
R P + + VEEK VPFF+ GK L++RLN
Sbjct: 61 GRNPRTGETVEVEEKHVPFFKTGKLLRDRLNGN 93
>gi|313902512|ref|ZP_07835913.1| bacterial nucleoid protein Hbs [Thermaerobacter subterraneus DSM
13965]
gi|313467198|gb|EFR62711.1| bacterial nucleoid protein Hbs [Thermaerobacter subterraneus DSM
13965]
Length = 90
Score = 107 bits (269), Expect = 4e-22, Method: Composition-based stats.
Identities = 35/91 (38%), Positives = 54/91 (59%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K L+ IA+K LN +D E+ VN +E +++ALA G +V + GFG+F VR R AR
Sbjct: 1 MNKPELVNAIAEKT-GLNKKDSERAVNAFVESISEALARGDKVSLVGFGTFEVRTRQART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + +++ VP F+ GK L++ +
Sbjct: 60 GRNPRTGQTLTIPAAKVPAFKPGKQLRDMVK 90
>gi|189345750|ref|YP_001942279.1| histone family protein DNA-binding protein [Chlorobium limicola
DSM 245]
gi|189339897|gb|ACD89300.1| histone family protein DNA-binding protein [Chlorobium limicola
DSM 245]
Length = 91
Score = 107 bits (269), Expect = 4e-22, Method: Composition-based stats.
Identities = 31/90 (34%), Positives = 48/90 (53%), Gaps = 1/90 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ L+ IA + L D E+ VN + +T +L +G V + GFG+F+ RA R
Sbjct: 1 MSKAELVEKIASQ-AGLTKADAERAVNAFINVVTASLKDGDDVTLVGFGTFTTGDRAERQ 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P + I++ K V F+ GK LK+ +
Sbjct: 60 GRNPQTGETITIAAKKVVKFKPGKALKDEV 89
>gi|306841833|ref|ZP_07474515.1| DNA-binding protein HU [Brucella sp. BO2]
gi|306843971|ref|ZP_07476566.1| DNA-binding protein HU [Brucella sp. BO1]
gi|306275726|gb|EFM57450.1| DNA-binding protein HU [Brucella sp. BO1]
gi|306288060|gb|EFM59457.1| DNA-binding protein HU [Brucella sp. BO2]
Length = 91
Score = 107 bits (269), Expect = 4e-22, Method: Composition-based stats.
Identities = 35/91 (38%), Positives = 48/91 (52%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ L+ +A+K L D V+ +L +T AL G V + GFG FSV RAA
Sbjct: 1 MNKNELVAAVAEK-GGLTKADAGTAVDAVLASVTAALKAGEEVRLPGFGVFSVSHRAAST 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P K + + + VP F AGK LK+ +N
Sbjct: 60 GRNPSTGKEVDIPARNVPKFSAGKGLKDAVN 90
>gi|317492906|ref|ZP_07951330.1| DNA-binding protein [Enterobacteriaceae bacterium 9_2_54FAA]
gi|316919028|gb|EFV40363.1| DNA-binding protein [Enterobacteriaceae bacterium 9_2_54FAA]
Length = 90
Score = 107 bits (269), Expect = 4e-22, Method: Composition-based stats.
Identities = 34/91 (37%), Positives = 54/91 (59%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS L+ IA+ ++ + ++ ++ +T++L +G V + GFG+F VR+R+AR
Sbjct: 1 MNKSQLVDKIAE-GADISKAAAGRALDAIIASVTESLQSGDSVALVGFGTFDVRERSART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P K IS+ VP FRAGK LK+ +N
Sbjct: 60 GRNPQTGKEISIPAAKVPGFRAGKALKDAVN 90
>gi|258545129|ref|ZP_05705363.1| integration host factor subunit beta [Cardiobacterium hominis
ATCC 15826]
gi|258519648|gb|EEV88507.1| integration host factor subunit beta [Cardiobacterium hominis
ATCC 15826]
Length = 96
Score = 107 bits (269), Expect = 4e-22, Method: Composition-based stats.
Identities = 43/93 (46%), Positives = 60/93 (64%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI + + P+L QDVE+ V +++E++ Q+L G RVEIRGFGSFS+ R AR
Sbjct: 1 MTKSELIDRLCMRYPQLRSQDVEEAVKLIIEKVCQSLEKGDRVEIRGFGSFSLHYREART 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSP 93
R P + V K +P+FRAGK L+ER++
Sbjct: 61 GRNPKTGDSVEVPSKSIPYFRAGKELRERVDQN 93
>gi|37679485|ref|NP_934094.1| integration host factor subunit beta [Vibrio vulnificus YJ016]
gi|61213552|sp|Q7MLX5|IHFB_VIBVY RecName: Full=Integration host factor subunit beta;
Short=IHF-beta
gi|37198229|dbj|BAC94065.1| bacterial nucleoid DNA-binding protein [Vibrio vulnificus YJ016]
Length = 93
Score = 107 bits (269), Expect = 4e-22, Method: Composition-based stats.
Identities = 37/90 (41%), Positives = 53/90 (58%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI + + L+ +++E V +LE M L +G R+EIRGFGSFS+ R R+
Sbjct: 1 MTKSELIERLCAEQTHLSAKEIEDAVKDILEHMASTLESGDRIEIRGFGSFSLHYREPRV 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P + +E K VP F+ GK L+ER+
Sbjct: 61 GRNPKTGDKVELEGKYVPHFKPGKELRERV 90
>gi|261339246|ref|ZP_05967104.1| hypothetical protein ENTCAN_05482 [Enterobacter cancerogenus ATCC
35316]
gi|296103086|ref|YP_003613232.1| integration host factor subunit beta [Enterobacter cloacae subsp.
cloacae ATCC 13047]
gi|288319103|gb|EFC58041.1| integration host factor, beta subunit [Enterobacter cancerogenus
ATCC 35316]
gi|295057545|gb|ADF62283.1| integration host factor subunit beta [Enterobacter cloacae subsp.
cloacae ATCC 13047]
gi|295096387|emb|CBK85477.1| integration host factor, beta subunit [Enterobacter cloacae
subsp. cloacae NCTC 9394]
Length = 95
Score = 107 bits (268), Expect = 4e-22, Method: Composition-based stats.
Identities = 41/91 (45%), Positives = 53/91 (58%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI +A + P + + VE V +LE M LA G R+EIRGFGSFS+ RA R
Sbjct: 1 MTKSELIERLASQQPHIPAKAVEDAVKEMLEHMATTLAQGERIEIRGFGSFSLHYRAPRT 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + +E K VP F+ GK L++R N
Sbjct: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRAN 91
>gi|322832233|ref|YP_004212260.1| integration host factor, subunit beta [Rahnella sp. Y9602]
gi|321167434|gb|ADW73133.1| integration host factor, beta subunit [Rahnella sp. Y9602]
Length = 94
Score = 107 bits (268), Expect = 5e-22, Method: Composition-based stats.
Identities = 39/91 (42%), Positives = 55/91 (60%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI +A ++ + + VE V +LE M LA+G R+EIRGFGSFS+ RA R+
Sbjct: 1 MTKSELIERLAGQHSHIPAKAVEDAVKEMLEHMAATLADGERIEIRGFGSFSLHYRAPRV 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + ++ K VP F+ GK L++R N
Sbjct: 61 GRNPKTGDKVELDGKYVPHFKPGKELRDRAN 91
>gi|300716083|ref|YP_003740886.1| Integration host factor beta-subunit (IHF-beta) [Erwinia
billingiae Eb661]
gi|299061919|emb|CAX59035.1| Integration host factor beta-subunit (IHF-beta) [Erwinia
billingiae Eb661]
Length = 94
Score = 107 bits (268), Expect = 5e-22, Method: Composition-based stats.
Identities = 40/91 (43%), Positives = 53/91 (58%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI +A ++ + + VE V +LE M LA G R+EIRGFGSFS+ RA R
Sbjct: 1 MTKSELIERLAGQHSHIPAKVVEDAVKEMLEHMATTLAQGERIEIRGFGSFSLHYRAPRT 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + +E K VP F+ GK L++R N
Sbjct: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRAN 91
>gi|240136832|ref|YP_002961299.1| integration host factor (IHF), beta subunit, site-specific
recombination [Methylobacterium extorquens AM1]
gi|240006796|gb|ACS38022.1| integration host factor (IHF), beta subunit, site-specific
recombination [Methylobacterium extorquens AM1]
Length = 102
Score = 107 bits (268), Expect = 5e-22, Method: Composition-based stats.
Identities = 45/91 (49%), Positives = 64/91 (70%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
MIKS L+ IA++NP L +DVE +VN +L+ + ALA G RVE+RGFG+FSV++R AR
Sbjct: 1 MIKSELVLKIAEQNPHLYQRDVETLVNAILDTIADALAQGDRVELRGFGAFSVKRREARR 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + ++V EK +P F+ GK ++ RLN
Sbjct: 61 GRNPRTGESVAVSEKAIPVFKTGKEMRLRLN 91
>gi|58580659|ref|YP_199675.1| histone-like protein [Xanthomonas oryzae pv. oryzae KACC10331]
gi|58425253|gb|AAW74290.1| histone-like protein [Xanthomonas oryzae pv. oryzae KACC10331]
Length = 145
Score = 107 bits (268), Expect = 5e-22, Method: Composition-based stats.
Identities = 32/91 (35%), Positives = 50/91 (54%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI +A ++ + + V+ ++ E+T+AL G V + GFG+F VR+RA R
Sbjct: 56 MNKTELIDGVAAA-ADISKAEAGRAVDAVVSEITKALKKGDAVTLVGFGTFQVRERAERT 114
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P I + P F+AGK LK+ +N
Sbjct: 115 GRNPKTGDSIKIAASKNPAFKAGKALKDAVN 145
>gi|329298227|ref|ZP_08255563.1| integration host factor subunit beta [Plautia stali symbiont]
Length = 94
Score = 107 bits (268), Expect = 5e-22, Method: Composition-based stats.
Identities = 40/91 (43%), Positives = 53/91 (58%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI +A ++ + + VE V +LE M LA G R+EIRGFGSFS+ RA R
Sbjct: 1 MTKSELIERLAGQHTHIPAKVVEDAVKEMLEHMATTLAQGERIEIRGFGSFSLHYRAPRT 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + +E K VP F+ GK L++R N
Sbjct: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRAN 91
>gi|226939799|ref|YP_002794872.1| integration host factor, beta subunit [Laribacter hongkongensis
HLHK9]
gi|254803536|sp|C1D546|IHFB_LARHH RecName: Full=Integration host factor subunit beta;
Short=IHF-beta
gi|226714725|gb|ACO73863.1| integration host factor, beta subunit [Laribacter hongkongensis
HLHK9]
Length = 99
Score = 107 bits (268), Expect = 5e-22, Method: Composition-based stats.
Identities = 41/91 (45%), Positives = 57/91 (62%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI +A++ P L +D E V +L+ M +LA+G R+EIRGFGSF + R R
Sbjct: 1 MTKSELIARLAERYPHLVAKDTELAVKTILDAMAVSLASGQRIEIRGFGSFDLNYRPPRT 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + + V EK VP F+AGK L+ER++
Sbjct: 61 GRNPKSGSSVHVPEKFVPHFKAGKELRERVD 91
>gi|212638931|ref|YP_002315451.1| DNA-binding protein HU-alpha (histone-like protein) [Anoxybacillus
flavithermus WK1]
gi|212560411|gb|ACJ33466.1| DNA-binding protein HU-alpha (histone-like protein) [Anoxybacillus
flavithermus WK1]
Length = 101
Score = 107 bits (268), Expect = 5e-22, Method: Composition-based stats.
Identities = 35/91 (38%), Positives = 56/91 (61%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI +A+ + L+ +D K V+ + + +T+AL NG +V++ GFG+F VR+RAAR
Sbjct: 12 MNKTELINAVAEAS-GLSKKDASKAVDAVFDAITEALKNGDKVQLIGFGNFEVRERAARK 70
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + I + VP F+ GK LK+ +
Sbjct: 71 GRNPQTGEEIEIAASKVPAFKPGKALKDAVK 101
>gi|225851686|ref|YP_002731919.1| integration host factor subunit beta [Brucella melitensis ATCC
23457]
gi|256045945|ref|ZP_05448817.1| integration host factor subunit beta [Brucella melitensis bv. 1
str. Rev.1]
gi|256264801|ref|ZP_05467333.1| integration host factor subunit beta [Brucella melitensis bv. 2
str. 63/9]
gi|260563226|ref|ZP_05833712.1| integration host factor subunit beta [Brucella melitensis bv. 1
str. 16M]
gi|265992355|ref|ZP_06104912.1| integration host factor subunit beta [Brucella melitensis bv. 1
str. Rev.1]
gi|21362604|sp|Q8YET3|IHFB_BRUME RecName: Full=Integration host factor subunit beta;
Short=IHF-beta
gi|254803528|sp|C0RGK7|IHFB_BRUMB RecName: Full=Integration host factor subunit beta;
Short=IHF-beta
gi|225640051|gb|ACN99964.1| integration host factor, beta subunit [Brucella melitensis ATCC
23457]
gi|260153242|gb|EEW88334.1| integration host factor subunit beta [Brucella melitensis bv. 1
str. 16M]
gi|263003421|gb|EEZ15714.1| integration host factor subunit beta [Brucella melitensis bv. 1
str. Rev.1]
gi|263095212|gb|EEZ18881.1| integration host factor subunit beta [Brucella melitensis bv. 2
str. 63/9]
Length = 94
Score = 107 bits (268), Expect = 5e-22, Method: Composition-based stats.
Identities = 49/91 (53%), Positives = 63/91 (69%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
MIKS L+ IA +NP L +DV IV + +E+T ALA G RVE+RGFG+FSV+ R AR
Sbjct: 1 MIKSELVQIIASRNPHLFQRDVVNIVGAVFDEITNALAEGNRVELRGFGAFSVKNRPARS 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + + VEEK VPFF+ GK L++RLN
Sbjct: 61 GRNPRTGETVDVEEKWVPFFKTGKKLRDRLN 91
>gi|188579482|ref|YP_001922927.1| integration host factor, beta subunit [Methylobacterium populi
BJ001]
gi|179342980|gb|ACB78392.1| integration host factor, beta subunit [Methylobacterium populi
BJ001]
Length = 102
Score = 107 bits (268), Expect = 5e-22, Method: Composition-based stats.
Identities = 46/91 (50%), Positives = 64/91 (70%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
MIKS L+ IA++NP L +DVE +VN +L+ + ALA G RVE+RGFG+FSV++R AR
Sbjct: 1 MIKSELVLKIAEQNPHLYQRDVETLVNAILDTIADALAQGDRVELRGFGAFSVKRREARR 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + +SV EK +P F+ GK ++ RLN
Sbjct: 61 GRNPRTGESVSVSEKAIPVFKTGKEMRLRLN 91
>gi|261253451|ref|ZP_05946024.1| integration host factor beta subunit [Vibrio orientalis CIP
102891]
gi|260936842|gb|EEX92831.1| integration host factor beta subunit [Vibrio orientalis CIP
102891]
Length = 93
Score = 107 bits (268), Expect = 5e-22, Method: Composition-based stats.
Identities = 38/91 (41%), Positives = 53/91 (58%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI + + L+ +++E V +LE M L G R+EIRGFGSFS+ R R+
Sbjct: 1 MTKSELIERLCAEQTHLSAKEIEDAVKDILEHMASTLEGGDRIEIRGFGSFSLHFREPRV 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + +E K VP F+ GK L+ER+N
Sbjct: 61 GRNPKTGDKVELEGKFVPHFKPGKELRERVN 91
>gi|240849695|ref|YP_002971083.1| integration host factor beta subunit [Bartonella grahamii as4aup]
gi|240266818|gb|ACS50406.1| integration host factor beta subunit [Bartonella grahamii as4aup]
Length = 92
Score = 107 bits (268), Expect = 5e-22, Method: Composition-based stats.
Identities = 51/92 (55%), Positives = 69/92 (75%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M+KS L+ IA+ NP L +DVE IVN + EE++ ALANG RVE+RGFG+FSV+ R+AR
Sbjct: 1 MVKSELVQIIARHNPHLFQRDVENIVNAIFEEISTALANGNRVELRGFGAFSVKSRSARN 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P + +SVEEK +PFF+ GK+L++RLN
Sbjct: 61 GRNPRTGEAVSVEEKWIPFFKTGKDLRDRLNQ 92
>gi|87198191|ref|YP_495448.1| histone-like DNA-binding protein [Novosphingobium aromaticivorans
DSM 12444]
gi|87133872|gb|ABD24614.1| histone-like DNA-binding protein [Novosphingobium aromaticivorans
DSM 12444]
Length = 93
Score = 107 bits (268), Expect = 5e-22, Method: Composition-based stats.
Identities = 40/93 (43%), Positives = 67/93 (72%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
MI+S L+ +AK++P + +++E++V++ +E+ + LA GGRVE+RGFG+FS R+R AR
Sbjct: 1 MIRSELLQALAKESPGMRSEEIERVVDVFFDEIAKRLAEGGRVELRGFGAFSTRERDARK 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSP 93
R P + + V K VP+F+AGK +++RLN+
Sbjct: 61 GRNPRTGETVEVPGKKVPYFKAGKEMRQRLNAD 93
>gi|49474845|ref|YP_032886.1| integration host factor subunit beta [Bartonella henselae str.
Houston-1]
gi|49237650|emb|CAF26830.1| Integration host factor beta-subunit [Bartonella henselae str.
Houston-1]
Length = 92
Score = 107 bits (268), Expect = 5e-22, Method: Composition-based stats.
Identities = 49/92 (53%), Positives = 67/92 (72%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M+KS L+ IA+ NP L +DVE IVN + EE++ AL NG RVE+RGFG+FSV+ R+AR
Sbjct: 1 MVKSELVQIIARHNPHLFQRDVENIVNAIFEEISTALVNGNRVELRGFGAFSVKSRSARN 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P + + VEEK +PFF+ GK+L++RLN
Sbjct: 61 GRNPRTGEAVMVEEKWIPFFKTGKDLRDRLNQ 92
>gi|323495048|ref|ZP_08100137.1| integration host factor subunit beta [Vibrio brasiliensis LMG
20546]
gi|323310705|gb|EGA63880.1| integration host factor subunit beta [Vibrio brasiliensis LMG
20546]
Length = 93
Score = 107 bits (268), Expect = 5e-22, Method: Composition-based stats.
Identities = 38/91 (41%), Positives = 54/91 (59%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI + + L+ +++E V +LE M L +G R+EIRGFGSFS+ R R+
Sbjct: 1 MTKSELIERLCAEQTHLSAKEIEDAVKDILEHMASTLESGDRIEIRGFGSFSLHFREPRV 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + +E K VP F+ GK L+ER+N
Sbjct: 61 GRNPKTGDKVELEGKFVPHFKPGKELRERVN 91
>gi|291616907|ref|YP_003519649.1| IhfB [Pantoea ananatis LMG 20103]
gi|304397072|ref|ZP_07378951.1| integration host factor, beta subunit [Pantoea sp. aB]
gi|308186258|ref|YP_003930389.1| Integration host factor subunit alpha (IHF- alpha) [Pantoea
vagans C9-1]
gi|291151937|gb|ADD76521.1| IhfB [Pantoea ananatis LMG 20103]
gi|304355221|gb|EFM19589.1| integration host factor, beta subunit [Pantoea sp. aB]
gi|308056768|gb|ADO08940.1| Integration host factor subunit alpha (IHF- alpha) [Pantoea
vagans C9-1]
gi|327393335|dbj|BAK10757.1| integration host factor beta- subunit IhfB [Pantoea ananatis
AJ13355]
Length = 94
Score = 107 bits (268), Expect = 5e-22, Method: Composition-based stats.
Identities = 40/91 (43%), Positives = 53/91 (58%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI +A ++ + + VE V +LE M LA G R+EIRGFGSFS+ RA R
Sbjct: 1 MTKSELIERLAGQHTHIPAKVVEDAVKEMLEHMATTLAQGERIEIRGFGSFSLHYRAPRT 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + +E K VP F+ GK L++R N
Sbjct: 61 GRNPKTGDKVDLEGKYVPHFKPGKELRDRAN 91
>gi|119946633|ref|YP_944313.1| integration host factor, beta subunit [Psychromonas ingrahamii
37]
gi|166975884|sp|A1SYZ9|IHFB_PSYIN RecName: Full=Integration host factor subunit beta;
Short=IHF-beta
gi|119865237|gb|ABM04714.1| integration host factor, beta subunit [Psychromonas ingrahamii
37]
Length = 95
Score = 107 bits (268), Expect = 5e-22, Method: Composition-based stats.
Identities = 39/95 (41%), Positives = 59/95 (62%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI + K+ +L+ ++VE V L M +LA G R+E+RGFGSFS+ RA R+
Sbjct: 1 MTKSDLIERLTSKHFQLSVKEVEDSVKETLTLMANSLAQGERIEVRGFGSFSLHYRAPRV 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDS 95
R P + ++ K VP F+ GK L+ER+N+ ++
Sbjct: 61 GRNPKTGDRVELDGKYVPHFKPGKALRERVNAANA 95
>gi|29655026|ref|NP_820718.1| integration host factor beta-subunit [Coxiella burnetii RSA 493]
gi|161830808|ref|YP_001597559.1| integration host factor, beta subunit [Coxiella burnetii RSA 331]
gi|212211779|ref|YP_002302715.1| integration host factor beta-subunit [Coxiella burnetii
CbuG_Q212]
gi|29542295|gb|AAO91232.1| integration host factor beta-subunit [Coxiella burnetii RSA 493]
gi|161762675|gb|ABX78317.1| integration host factor, beta subunit [Coxiella burnetii RSA 331]
gi|212010189|gb|ACJ17570.1| integration host factor beta-subunit [Coxiella burnetii
CbuG_Q212]
Length = 112
Score = 107 bits (268), Expect = 5e-22, Method: Composition-based stats.
Identities = 41/93 (44%), Positives = 57/93 (61%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M+KS LI IA + L+++DVE VN +LE M+ L G R+EIRGFGSFS+ R R
Sbjct: 1 MVKSELINRIAMQQKALSWKDVELSVNYILEYMSNTLGQGDRIEIRGFGSFSLHYRPRRK 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSP 93
A P + + E K P F+ GK+L++R+N
Sbjct: 61 AHNPKTGERVYTEAKYTPHFKPGKDLRDRVNDN 93
>gi|50121514|ref|YP_050681.1| integration host factor subunit beta [Pectobacterium atrosepticum
SCRI1043]
gi|227111987|ref|ZP_03825643.1| integration host factor subunit beta [Pectobacterium carotovorum
subsp. brasiliensis PBR1692]
gi|227328154|ref|ZP_03832178.1| integration host factor subunit beta [Pectobacterium carotovorum
subsp. carotovorum WPP14]
gi|253688123|ref|YP_003017313.1| integration host factor, beta subunit [Pectobacterium carotovorum
subsp. carotovorum PC1]
gi|261821284|ref|YP_003259390.1| integration host factor subunit beta [Pectobacterium wasabiae
WPP163]
gi|81693226|sp|Q6D404|IHFB_ERWCT RecName: Full=Integration host factor subunit beta;
Short=IHF-beta
gi|259492036|sp|C6DF68|IHFB_PECCP RecName: Full=Integration host factor subunit beta;
Short=IHF-beta
gi|49612040|emb|CAG75489.1| integration host factor beta-subunit [Pectobacterium atrosepticum
SCRI1043]
gi|251754701|gb|ACT12777.1| integration host factor, beta subunit [Pectobacterium carotovorum
subsp. carotovorum PC1]
gi|261605297|gb|ACX87783.1| integration host factor, beta subunit [Pectobacterium wasabiae
WPP163]
Length = 94
Score = 107 bits (268), Expect = 6e-22, Method: Composition-based stats.
Identities = 40/91 (43%), Positives = 54/91 (59%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI +A + + + VE V +LE+M LA G R+EIRGFGSFS+ RA R+
Sbjct: 1 MTKSELIERLAGQQSHIPAKVVEDAVKEMLEQMASTLAEGDRIEIRGFGSFSLHYRAPRV 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + +E K VP F+ GK L++R N
Sbjct: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRAN 91
>gi|17987160|ref|NP_539794.1| DNA-binding protein HU-alpha [Brucella melitensis bv. 1 str. 16M]
gi|225627579|ref|ZP_03785616.1| DNA-binding protein HRL18 [Brucella ceti str. Cudo]
gi|237815529|ref|ZP_04594526.1| DNA-binding protein HRL18 [Brucella abortus str. 2308 A]
gi|294852445|ref|ZP_06793118.1| DNA-binding protein HU-beta [Brucella sp. NVSL 07-0026]
gi|17982826|gb|AAL52058.1| DNA-binding protein hu-alpha [Brucella melitensis bv. 1 str. 16M]
gi|225617584|gb|EEH14629.1| DNA-binding protein HRL18 [Brucella ceti str. Cudo]
gi|237788827|gb|EEP63038.1| DNA-binding protein HRL18 [Brucella abortus str. 2308 A]
gi|294821034|gb|EFG38033.1| DNA-binding protein HU-beta [Brucella sp. NVSL 07-0026]
Length = 93
Score = 107 bits (268), Expect = 6e-22, Method: Composition-based stats.
Identities = 35/91 (38%), Positives = 49/91 (53%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ L+ +A+K L D V+ +L +T AL G V + GFG FSV RAA
Sbjct: 3 MNKNELVAAVAEK-GGLTKADAGTAVDAVLASVTAALKAGEEVRLPGFGVFSVSHRAAST 61
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P K +++ + VP F AGK LK+ +N
Sbjct: 62 GRNPSTGKEVAIPARNVPKFSAGKGLKDAVN 92
>gi|307825283|ref|ZP_07655503.1| integration host factor, beta subunit [Methylobacter
tundripaludum SV96]
gi|307733739|gb|EFO04596.1| integration host factor, beta subunit [Methylobacter
tundripaludum SV96]
Length = 101
Score = 107 bits (267), Expect = 6e-22, Method: Composition-based stats.
Identities = 41/96 (42%), Positives = 62/96 (64%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI +AK P L +DVE V ++E+M QAL++G R+EIRGFGSFS+ R R+
Sbjct: 1 MTKSELIEALAKHQPHLAQKDVEIAVKCIIEQMNQALSSGERIEIRGFGSFSLHLRPPRM 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDST 96
R P + +++ +K VP F+ GK L++R+++
Sbjct: 61 GRNPKTGESVALSKKHVPHFKPGKELRDRVDASREK 96
>gi|289207761|ref|YP_003459827.1| histone family protein DNA-binding protein [Thioalkalivibrio sp.
K90mix]
gi|288943392|gb|ADC71091.1| histone family protein DNA-binding protein [Thioalkalivibrio sp.
K90mix]
Length = 90
Score = 107 bits (267), Expect = 6e-22, Method: Composition-based stats.
Identities = 32/91 (35%), Positives = 50/91 (54%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI IA + + ++++ ++ + LA G +V + GFG+F VR+R AR
Sbjct: 1 MNKSELIDAIAAE-ADVPKAQAGRMLDAMVTVVGDTLAKGDQVSLVGFGTFLVREREART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + I + P F+AGK LK+R+N
Sbjct: 60 GRNPRTGQSIQIAASKTPSFKAGKALKDRVN 90
>gi|62290020|ref|YP_221813.1| DNA-binding protein HU [Brucella abortus bv. 1 str. 9-941]
gi|82699948|ref|YP_414522.1| histone-like DNA-binding protein [Brucella melitensis biovar
Abortus 2308]
gi|148559071|ref|YP_001259027.1| DNA-binding protein HU [Brucella ovis ATCC 25840]
gi|161619058|ref|YP_001592945.1| DNA-binding protein HRL18 [Brucella canis ATCC 23365]
gi|163843375|ref|YP_001627779.1| DNA-binding protein HRL18 [Brucella suis ATCC 23445]
gi|189024260|ref|YP_001935028.1| Histone-like DNA-binding protein [Brucella abortus S19]
gi|225852607|ref|YP_002732840.1| DNA-binding protein HRL18 [Brucella melitensis ATCC 23457]
gi|254689333|ref|ZP_05152587.1| DNA-binding protein HU-alpha [Brucella abortus bv. 6 str. 870]
gi|254693817|ref|ZP_05155645.1| DNA-binding protein HU-alpha [Brucella abortus bv. 3 str. Tulya]
gi|254697466|ref|ZP_05159294.1| DNA-binding protein HU-alpha [Brucella abortus bv. 2 str.
86/8/59]
gi|254701851|ref|ZP_05163679.1| DNA-binding protein HU-alpha [Brucella suis bv. 5 str. 513]
gi|254704394|ref|ZP_05166222.1| DNA-binding protein HU-alpha [Brucella suis bv. 3 str. 686]
gi|254706708|ref|ZP_05168536.1| DNA-binding protein HU-alpha [Brucella pinnipedialis M163/99/10]
gi|254710184|ref|ZP_05171995.1| DNA-binding protein HU-alpha [Brucella pinnipedialis B2/94]
gi|254719171|ref|ZP_05180982.1| DNA-binding protein HU-alpha [Brucella sp. 83/13]
gi|254730363|ref|ZP_05188941.1| DNA-binding protein HU-alpha [Brucella abortus bv. 4 str. 292]
gi|256031678|ref|ZP_05445292.1| DNA-binding protein HU-alpha [Brucella pinnipedialis M292/94/1]
gi|256044764|ref|ZP_05447668.1| DNA-binding protein HU-alpha [Brucella melitensis bv. 1 str.
Rev.1]
gi|256061190|ref|ZP_05451342.1| DNA-binding protein HU-alpha [Brucella neotomae 5K33]
gi|256113663|ref|ZP_05454474.1| DNA-binding protein HU-alpha [Brucella melitensis bv. 3 str.
Ether]
gi|256159834|ref|ZP_05457567.1| DNA-binding protein HU-alpha [Brucella ceti M490/95/1]
gi|256255080|ref|ZP_05460616.1| DNA-binding protein HU-alpha [Brucella ceti B1/94]
gi|256257579|ref|ZP_05463115.1| DNA-binding protein HU-alpha [Brucella abortus bv. 9 str. C68]
gi|256263900|ref|ZP_05466432.1| histone family protein DNA-binding protein [Brucella melitensis
bv. 2 str. 63/9]
gi|256369532|ref|YP_003107042.1| DNA-binding protein HU [Brucella microti CCM 4915]
gi|260168812|ref|ZP_05755623.1| DNA-binding protein HU-alpha [Brucella sp. F5/99]
gi|260546573|ref|ZP_05822312.1| histone family protein DNA-binding protein [Brucella abortus NCTC
8038]
gi|260565634|ref|ZP_05836118.1| histone family protein DNA-binding protein [Brucella melitensis
bv. 1 str. 16M]
gi|260566358|ref|ZP_05836828.1| histone family protein DNA-binding protein [Brucella suis bv. 4
str. 40]
gi|260754849|ref|ZP_05867197.1| histone family protein DNA-binding protein [Brucella abortus bv.
6 str. 870]
gi|260758066|ref|ZP_05870414.1| histone family protein DNA-binding protein [Brucella abortus bv.
4 str. 292]
gi|260761890|ref|ZP_05874233.1| histone family protein DNA-binding protein [Brucella abortus bv.
2 str. 86/8/59]
gi|260883861|ref|ZP_05895475.1| histone family protein DNA-binding protein [Brucella abortus bv.
9 str. C68]
gi|261214100|ref|ZP_05928381.1| histone family protein DNA-binding protein [Brucella abortus bv.
3 str. Tulya]
gi|261222273|ref|ZP_05936554.1| histone family protein DNA-binding protein [Brucella ceti B1/94]
gi|261314170|ref|ZP_05953367.1| histone family protein DNA-binding protein [Brucella
pinnipedialis M163/99/10]
gi|261317741|ref|ZP_05956938.1| histone family protein DNA-binding protein [Brucella
pinnipedialis B2/94]
gi|261325196|ref|ZP_05964393.1| histone family protein DNA-binding protein [Brucella neotomae
5K33]
gi|261752412|ref|ZP_05996121.1| histone family protein DNA-binding protein [Brucella suis bv. 5
str. 513]
gi|261755072|ref|ZP_05998781.1| histone family protein DNA-binding protein [Brucella suis bv. 3
str. 686]
gi|261758297|ref|ZP_06002006.1| histone family protein DNA-binding protein [Brucella sp. F5/99]
gi|265984167|ref|ZP_06096902.1| histone family protein DNA-binding protein [Brucella sp. 83/13]
gi|265988772|ref|ZP_06101329.1| histone family protein DNA-binding protein [Brucella
pinnipedialis M292/94/1]
gi|265991187|ref|ZP_06103744.1| histone family protein DNA-binding protein [Brucella melitensis
bv. 1 str. Rev.1]
gi|265995023|ref|ZP_06107580.1| histone family protein DNA-binding protein [Brucella melitensis
bv. 3 str. Ether]
gi|265998237|ref|ZP_06110794.1| histone family protein DNA-binding protein [Brucella ceti
M490/95/1]
gi|297248421|ref|ZP_06932139.1| DNA-binding protein HU-beta [Brucella abortus bv. 5 str. B3196]
gi|306838163|ref|ZP_07471019.1| DNA-binding protein HU [Brucella sp. NF 2653]
gi|62196152|gb|AAX74452.1| DNA-binding protein HU [Brucella abortus bv. 1 str. 9-941]
gi|82616049|emb|CAJ11085.1| Histone-like bacterial DNA-binding protein [Brucella melitensis
biovar Abortus 2308]
gi|148370328|gb|ABQ60307.1| DNA-binding protein HU [Brucella ovis ATCC 25840]
gi|161335869|gb|ABX62174.1| DNA-binding protein HRL18 [Brucella canis ATCC 23365]
gi|163674098|gb|ABY38209.1| DNA-binding protein HRL18 [Brucella suis ATCC 23445]
gi|189019832|gb|ACD72554.1| Histone-like bacterial DNA-binding protein [Brucella abortus S19]
gi|225640972|gb|ACO00886.1| DNA-binding protein HRL18 [Brucella melitensis ATCC 23457]
gi|255999694|gb|ACU48093.1| DNA-binding protein HU [Brucella microti CCM 4915]
gi|260095623|gb|EEW79500.1| histone family protein DNA-binding protein [Brucella abortus NCTC
8038]
gi|260151702|gb|EEW86796.1| histone family protein DNA-binding protein [Brucella melitensis
bv. 1 str. 16M]
gi|260155876|gb|EEW90956.1| histone family protein DNA-binding protein [Brucella suis bv. 4
str. 40]
gi|260668384|gb|EEX55324.1| histone family protein DNA-binding protein [Brucella abortus bv.
4 str. 292]
gi|260672322|gb|EEX59143.1| histone family protein DNA-binding protein [Brucella abortus bv.
2 str. 86/8/59]
gi|260674957|gb|EEX61778.1| histone family protein DNA-binding protein [Brucella abortus bv.
6 str. 870]
gi|260873389|gb|EEX80458.1| histone family protein DNA-binding protein [Brucella abortus bv.
9 str. C68]
gi|260915707|gb|EEX82568.1| histone family protein DNA-binding protein [Brucella abortus bv.
3 str. Tulya]
gi|260920857|gb|EEX87510.1| histone family protein DNA-binding protein [Brucella ceti B1/94]
gi|261296964|gb|EEY00461.1| histone family protein DNA-binding protein [Brucella
pinnipedialis B2/94]
gi|261301176|gb|EEY04673.1| histone family protein DNA-binding protein [Brucella neotomae
5K33]
gi|261303196|gb|EEY06693.1| histone family protein DNA-binding protein [Brucella
pinnipedialis M163/99/10]
gi|261738281|gb|EEY26277.1| histone family protein DNA-binding protein [Brucella sp. F5/99]
gi|261742165|gb|EEY30091.1| histone family protein DNA-binding protein [Brucella suis bv. 5
str. 513]
gi|261744825|gb|EEY32751.1| histone family protein DNA-binding protein [Brucella suis bv. 3
str. 686]
gi|262552705|gb|EEZ08695.1| histone family protein DNA-binding protein [Brucella ceti
M490/95/1]
gi|262766136|gb|EEZ11925.1| histone family protein DNA-binding protein [Brucella melitensis
bv. 3 str. Ether]
gi|263001971|gb|EEZ14546.1| histone family protein DNA-binding protein [Brucella melitensis
bv. 1 str. Rev.1]
gi|263094032|gb|EEZ17966.1| histone family protein DNA-binding protein [Brucella melitensis
bv. 2 str. 63/9]
gi|264660969|gb|EEZ31230.1| histone family protein DNA-binding protein [Brucella
pinnipedialis M292/94/1]
gi|264662759|gb|EEZ33020.1| histone family protein DNA-binding protein [Brucella sp. 83/13]
gi|297175590|gb|EFH34937.1| DNA-binding protein HU-beta [Brucella abortus bv. 5 str. B3196]
gi|306406753|gb|EFM62976.1| DNA-binding protein HU [Brucella sp. NF 2653]
gi|326409126|gb|ADZ66191.1| Histone-like bacterial DNA-binding protein [Brucella melitensis
M28]
gi|326538834|gb|ADZ87049.1| DNA-binding protein HRL18 [Brucella melitensis M5-90]
Length = 91
Score = 107 bits (267), Expect = 6e-22, Method: Composition-based stats.
Identities = 35/91 (38%), Positives = 49/91 (53%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ L+ +A+K L D V+ +L +T AL G V + GFG FSV RAA
Sbjct: 1 MNKNELVAAVAEK-GGLTKADAGTAVDAVLASVTAALKAGEEVRLPGFGVFSVSHRAAST 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P K +++ + VP F AGK LK+ +N
Sbjct: 60 GRNPSTGKEVAIPARNVPKFSAGKGLKDAVN 90
>gi|15641916|ref|NP_231548.1| integration host factor subunit beta [Vibrio cholerae O1 biovar
El Tor str. N16961]
gi|121591425|ref|ZP_01678704.1| integration host factor, beta subunit [Vibrio cholerae 2740-80]
gi|147673848|ref|YP_001217447.1| integration host factor subunit beta [Vibrio cholerae O395]
gi|153819865|ref|ZP_01972532.1| integration host factor, beta subunit [Vibrio cholerae NCTC 8457]
gi|153824201|ref|ZP_01976868.1| integration host factor, beta subunit [Vibrio cholerae B33]
gi|153825168|ref|ZP_01977835.1| integration host factor, beta subunit [Vibrio cholerae MZO-2]
gi|227082044|ref|YP_002810595.1| integration host factor, beta subunit [Vibrio cholerae M66-2]
gi|229507990|ref|ZP_04397495.1| integration host factor beta subunit [Vibrio cholerae BX 330286]
gi|229511772|ref|ZP_04401251.1| integration host factor beta subunit [Vibrio cholerae B33]
gi|229515300|ref|ZP_04404760.1| integration host factor beta subunit [Vibrio cholerae TMA 21]
gi|229518910|ref|ZP_04408353.1| integration host factor beta subunit [Vibrio cholerae RC9]
gi|229521836|ref|ZP_04411253.1| integration host factor beta subunit [Vibrio cholerae TM
11079-80]
gi|229523934|ref|ZP_04413339.1| integration host factor beta subunit [Vibrio cholerae bv.
albensis VL426]
gi|229529060|ref|ZP_04418450.1| integration host factor beta subunit [Vibrio cholerae 12129(1)]
gi|229607536|ref|YP_002878184.1| integration host factor subunit beta [Vibrio cholerae MJ-1236]
gi|254286725|ref|ZP_04961679.1| integration host factor, beta subunit [Vibrio cholerae AM-19226]
gi|254849002|ref|ZP_05238352.1| integration host factor subunit beta [Vibrio cholerae MO10]
gi|255745327|ref|ZP_05419276.1| integration host factor beta subunit [Vibrio cholera CIRS 101]
gi|261210555|ref|ZP_05924848.1| integration host factor beta subunit [Vibrio sp. RC341]
gi|262167469|ref|ZP_06035176.1| integration host factor beta subunit [Vibrio cholerae RC27]
gi|262404267|ref|ZP_06080822.1| integration host factor beta subunit [Vibrio sp. RC586]
gi|297579431|ref|ZP_06941359.1| integration host factor subunit beta [Vibrio cholerae RC385]
gi|298498049|ref|ZP_07007856.1| integration host factor, beta subunit [Vibrio cholerae MAK 757]
gi|14194866|sp|Q9KQT4|IHFB_VIBCH RecName: Full=Integration host factor subunit beta;
Short=IHF-beta
gi|172047649|sp|A5F6Y4|IHFB_VIBC3 RecName: Full=Integration host factor subunit beta;
Short=IHF-beta
gi|254803542|sp|C3LNL8|IHFB_VIBCM RecName: Full=Integration host factor subunit beta;
Short=IHF-beta
gi|9656449|gb|AAF95062.1| integration host factor, beta subunit [Vibrio cholerae O1 biovar
El Tor str. N16961]
gi|121546720|gb|EAX56896.1| integration host factor, beta subunit [Vibrio cholerae 2740-80]
gi|126509595|gb|EAZ72189.1| integration host factor, beta subunit [Vibrio cholerae NCTC 8457]
gi|126518277|gb|EAZ75502.1| integration host factor, beta subunit [Vibrio cholerae B33]
gi|146315731|gb|ABQ20270.1| integration host factor, beta subunit [Vibrio cholerae O395]
gi|149741147|gb|EDM55198.1| integration host factor, beta subunit [Vibrio cholerae MZO-2]
gi|150423152|gb|EDN15099.1| integration host factor, beta subunit [Vibrio cholerae AM-19226]
gi|227009932|gb|ACP06144.1| integration host factor, beta subunit [Vibrio cholerae M66-2]
gi|227013812|gb|ACP10022.1| integration host factor, beta subunit [Vibrio cholerae O395]
gi|229332834|gb|EEN98320.1| integration host factor beta subunit [Vibrio cholerae 12129(1)]
gi|229337515|gb|EEO02532.1| integration host factor beta subunit [Vibrio cholerae bv.
albensis VL426]
gi|229340761|gb|EEO05766.1| integration host factor beta subunit [Vibrio cholerae TM
11079-80]
gi|229343599|gb|EEO08574.1| integration host factor beta subunit [Vibrio cholerae RC9]
gi|229348005|gb|EEO12964.1| integration host factor beta subunit [Vibrio cholerae TMA 21]
gi|229351737|gb|EEO16678.1| integration host factor beta subunit [Vibrio cholerae B33]
gi|229355495|gb|EEO20416.1| integration host factor beta subunit [Vibrio cholerae BX 330286]
gi|229370191|gb|ACQ60614.1| integration host factor beta subunit [Vibrio cholerae MJ-1236]
gi|254844707|gb|EET23121.1| integration host factor subunit beta [Vibrio cholerae MO10]
gi|255737157|gb|EET92553.1| integration host factor beta subunit [Vibrio cholera CIRS 101]
gi|260840340|gb|EEX66911.1| integration host factor beta subunit [Vibrio sp. RC341]
gi|262024166|gb|EEY42860.1| integration host factor beta subunit [Vibrio cholerae RC27]
gi|262349299|gb|EEY98437.1| integration host factor beta subunit [Vibrio sp. RC586]
gi|297537025|gb|EFH75858.1| integration host factor subunit beta [Vibrio cholerae RC385]
gi|297542382|gb|EFH78432.1| integration host factor, beta subunit [Vibrio cholerae MAK 757]
gi|327484458|gb|AEA78865.1| Integration host factor beta subunit [Vibrio cholerae LMA3894-4]
Length = 92
Score = 107 bits (267), Expect = 6e-22, Method: Composition-based stats.
Identities = 38/91 (41%), Positives = 53/91 (58%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI + + L+ +++E V +LE M L G R+EIRGFGSFS+ R R+
Sbjct: 1 MTKSELIERLCAEQTHLSAKEIEDAVKNILEHMASTLEAGERIEIRGFGSFSLHYREPRV 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + +E K VP F+ GK L+ER+N
Sbjct: 61 GRNPKTGDKVELEGKYVPHFKPGKELRERVN 91
>gi|103486981|ref|YP_616542.1| histone-like DNA-binding protein [Sphingopyxis alaskensis RB2256]
gi|98977058|gb|ABF53209.1| histone-like DNA-binding protein [Sphingopyxis alaskensis RB2256]
Length = 92
Score = 107 bits (267), Expect = 6e-22, Method: Composition-based stats.
Identities = 42/92 (45%), Positives = 60/92 (65%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
MI+S L+ IA +N L ++VE+IV+ + + LA GGRVE+RGFG+FS R R +R
Sbjct: 1 MIRSELVQKIANENSDLRVEEVERIVDTFFDSIVDQLATGGRVELRGFGAFSTRARESRT 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P + V+ K VP+F+ GK ++ERLNS
Sbjct: 61 GRNPRTGAAVEVKAKKVPYFKPGKEMRERLNS 92
>gi|153208209|ref|ZP_01946619.1| integration host factor, beta subunit [Coxiella burnetii 'MSU
Goat Q177']
gi|154706842|ref|YP_001423686.1| integration host factor beta-subunit [Coxiella burnetii Dugway
5J108-111]
gi|165923951|ref|ZP_02219783.1| integration host factor, beta subunit [Coxiella burnetii RSA 334]
gi|212217938|ref|YP_002304725.1| integration host factor beta-subunit [Coxiella burnetii
CbuK_Q154]
gi|120576114|gb|EAX32738.1| integration host factor, beta subunit [Coxiella burnetii 'MSU
Goat Q177']
gi|154356128|gb|ABS77590.1| integration host factor beta-subunit [Coxiella burnetii Dugway
5J108-111]
gi|165916607|gb|EDR35211.1| integration host factor, beta subunit [Coxiella burnetii RSA 334]
gi|212012200|gb|ACJ19580.1| integration host factor beta-subunit [Coxiella burnetii
CbuK_Q154]
Length = 112
Score = 107 bits (267), Expect = 6e-22, Method: Composition-based stats.
Identities = 41/93 (44%), Positives = 57/93 (61%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M+KS LI IA + L+++DVE VN +LE M+ L G R+EIRGFGSFS+ R R
Sbjct: 1 MVKSELINRIAMQQKALSWKDVELSVNYILEYMSNTLGQGDRIEIRGFGSFSLHYRPTRK 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSP 93
A P + + E K P F+ GK+L++R+N
Sbjct: 61 AHNPKTGERVYTEAKYTPHFKPGKDLRDRVNDN 93
>gi|288555641|ref|YP_003427576.1| non-specific DNA-binding protein II (Hbsu-like protein) [Bacillus
pseudofirmus OF4]
gi|288546801|gb|ADC50684.1| non-specific DNA-binding protein II (Hbsu-like protein) [Bacillus
pseudofirmus OF4]
Length = 90
Score = 107 bits (267), Expect = 6e-22, Method: Composition-based stats.
Identities = 34/91 (37%), Positives = 56/91 (61%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI +++++ L+ +D K V+ + + +T AL GG+V++ GFGSF VR+R+AR
Sbjct: 1 MNKTDLINSVSEQ-ADLSKKDASKAVDAVFDSITNALVEGGKVQLVGFGSFEVRERSARK 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + I + P F+ GK LK+ +N
Sbjct: 60 GRNPQTGQEIEIPATKNPAFKPGKQLKDAVN 90
>gi|162448780|ref|YP_001611147.1| integration host factor beta-subunit [Sorangium cellulosum 'So ce
56']
gi|161159362|emb|CAN90667.1| integration host factor beta-subunit [Sorangium cellulosum 'So ce
56']
Length = 114
Score = 107 bits (267), Expect = 6e-22, Method: Composition-based stats.
Identities = 39/92 (42%), Positives = 52/92 (56%), Gaps = 1/92 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI IA + +L E +VN + + MTQAL +EIRGFGSF+VR
Sbjct: 1 MTKSELIDAIAGR-GELTKARAELVVNCVFDAMTQALQRNEGIEIRGFGSFTVRPYKPYS 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P + + V K +PFF+ GK LKE +N+
Sbjct: 60 GRNPRTGQPVPVPAKRLPFFKVGKELKELVNA 91
>gi|78048051|ref|YP_364226.1| integration host factor subunit beta [Xanthomonas campestris pv.
vesicatoria str. 85-10]
gi|78036481|emb|CAJ24172.1| Integration host factor beta subunit [Xanthomonas campestris pv.
vesicatoria str. 85-10]
Length = 113
Score = 107 bits (267), Expect = 6e-22, Method: Composition-based stats.
Identities = 42/89 (47%), Positives = 56/89 (62%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI +A++ L DV+ V LLE M QAL++G R+EIRGFGSFS+ R RL
Sbjct: 11 MTKSELIEILARRQAHLKSDDVDLAVKSLLEMMGQALSDGDRIEIRGFGSFSLHYRPPRL 70
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKER 89
R P + +++ K VP F+ GK L+ER
Sbjct: 71 GRNPKTGESVALPGKHVPHFKPGKELRER 99
>gi|304395502|ref|ZP_07377385.1| histone family protein DNA-binding protein [Pantoea sp. aB]
gi|304356796|gb|EFM21160.1| histone family protein DNA-binding protein [Pantoea sp. aB]
Length = 93
Score = 107 bits (267), Expect = 7e-22, Method: Composition-based stats.
Identities = 35/90 (38%), Positives = 51/90 (56%), Gaps = 1/90 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
KS LI IA + ++ ++++ + ++ AL G V + GFG+FSVR RAAR
Sbjct: 5 NKSQLIDKIAA-DADISKAAAGRVLDAFMGSVSDALKEGDEVALVGFGTFSVRDRAARTG 63
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P K I++ VP FRAGK LK+ +N
Sbjct: 64 RNPQTGKEITIPAGKVPGFRAGKALKDAVN 93
>gi|238753504|ref|ZP_04614867.1| Integration host factor subunit beta [Yersinia ruckeri ATCC
29473]
gi|238708457|gb|EEQ00812.1| Integration host factor subunit beta [Yersinia ruckeri ATCC
29473]
Length = 94
Score = 107 bits (267), Expect = 7e-22, Method: Composition-based stats.
Identities = 40/91 (43%), Positives = 53/91 (58%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI +A + + + VE V +LE M LA G R+EIRGFGSFS+ RA R+
Sbjct: 1 MTKSELIERLAGQQSHIPAKAVEDAVKEMLEHMAGTLAEGERIEIRGFGSFSLHYRAPRV 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + +E K VP F+ GK L++R N
Sbjct: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRAN 91
>gi|237814623|ref|ZP_04593621.1| integration host factor, beta subunit [Brucella abortus str. 2308
A]
gi|237789460|gb|EEP63670.1| integration host factor, beta subunit [Brucella abortus str. 2308
A]
Length = 117
Score = 107 bits (267), Expect = 7e-22, Method: Composition-based stats.
Identities = 48/89 (53%), Positives = 62/89 (69%)
Query: 3 KSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLAR 62
KS L+ IA +NP L +DVE IV + +E+T ALA G RVE+RGFG+FSV+ R AR R
Sbjct: 26 KSELVQIIASRNPHLFQRDVENIVGAVFDEITNALAEGNRVELRGFGAFSVKNRPARSGR 85
Query: 63 APLAQKVISVEEKMVPFFRAGKNLKERLN 91
P + + VEEK VPFF+ GK L++RLN
Sbjct: 86 NPRTGETVDVEEKWVPFFKTGKKLRDRLN 114
>gi|77360983|ref|YP_340558.1| DNA-binding protein [Pseudoalteromonas haloplanktis TAC125]
gi|76875894|emb|CAI87115.1| DNA-binding protein HU-beta (NS1) (HU-1) [Pseudoalteromonas
haloplanktis TAC125]
Length = 90
Score = 107 bits (267), Expect = 7e-22, Method: Composition-based stats.
Identities = 35/91 (38%), Positives = 51/91 (56%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI IA + ++ + ++ +E +T AL G V + GFG+FSVR RAAR
Sbjct: 1 MNKSQLIDQIAA-DADISKAAAGRALDSFIESVTGALKEGDSVALVGFGTFSVRDRAARS 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + I + +P F+AGK LK+ +N
Sbjct: 60 GRNPQTGETIQIAAATIPAFKAGKALKDAVN 90
>gi|171463928|ref|YP_001798041.1| histone family protein DNA-binding protein [Polynucleobacter
necessarius subsp. necessarius STIR1]
gi|171193466|gb|ACB44427.1| histone family protein DNA-binding protein [Polynucleobacter
necessarius subsp. necessarius STIR1]
Length = 114
Score = 107 bits (267), Expect = 7e-22, Method: Composition-based stats.
Identities = 39/93 (41%), Positives = 60/93 (64%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
+ +S L+ ++A++ P+L +DVE V LL+ MT ALA G R+E+RG GSF + R AR
Sbjct: 9 ITRSELVESLAEQFPQLLPRDVELAVKTLLDTMTHALAEGKRIELRGVGSFVLHHRPART 68
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSP 93
R P + + + + EK VP F+ GK L+ER++
Sbjct: 69 DRNPKSGEKVLIPEKRVPRFKPGKELRERVDYK 101
>gi|90581254|ref|ZP_01237052.1| putative integration host factor, beta subunit [Vibrio angustum
S14]
gi|90437625|gb|EAS62818.1| putative integration host factor, beta subunit [Vibrio angustum
S14]
Length = 90
Score = 107 bits (267), Expect = 7e-22, Method: Composition-based stats.
Identities = 37/90 (41%), Positives = 53/90 (58%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI + + L+ + VE + +LE M LA G R+EIRGFGSFS+ RA R+
Sbjct: 1 MTKSELIERLCSQQTHLSAKQVEDAIKDILENMANTLAEGDRIEIRGFGSFSLHYRAPRV 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P + ++ K VP F+ GK L++R+
Sbjct: 61 GRNPKTGDKVELDGKYVPHFKPGKELRDRV 90
>gi|315127186|ref|YP_004069189.1| DNA-binding protein [Pseudoalteromonas sp. SM9913]
gi|315015700|gb|ADT69038.1| DNA-binding protein [Pseudoalteromonas sp. SM9913]
Length = 90
Score = 107 bits (267), Expect = 7e-22, Method: Composition-based stats.
Identities = 34/91 (37%), Positives = 53/91 (58%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI IA + ++ + ++ +E ++ AL +G V + GFG+FSVR+RAAR
Sbjct: 1 MNKSQLIDQIAA-DADISKAAAGRALDSFIESVSGALKDGDSVALVGFGTFSVRERAARA 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + I + +P F+AGK LK+ +N
Sbjct: 60 GRNPQTGETIQIAAANIPAFKAGKALKDAVN 90
>gi|188534268|ref|YP_001908065.1| integration host factor subunit beta [Erwinia tasmaniensis
Et1/99]
gi|226709794|sp|B2VC76|IHFB_ERWT9 RecName: Full=Integration host factor subunit beta;
Short=IHF-beta
gi|188029310|emb|CAO97187.1| Integration host factor beta-subunit (IHF-beta) [Erwinia
tasmaniensis Et1/99]
Length = 95
Score = 107 bits (267), Expect = 7e-22, Method: Composition-based stats.
Identities = 39/91 (42%), Positives = 52/91 (57%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI +A + + + VE V +LE M L+ G R+EIRGFGSFS+ RA R
Sbjct: 1 MTKSELIERLAGQQSHIPAKVVEDAVKEMLEHMATTLSEGERIEIRGFGSFSLHYRAPRT 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + +E K VP F+ GK L++R N
Sbjct: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRAN 91
>gi|269468958|gb|EEZ80539.1| histone family protein DNA-binding [uncultured SUP05 cluster
bacterium]
Length = 91
Score = 107 bits (267), Expect = 7e-22, Method: Composition-based stats.
Identities = 38/92 (41%), Positives = 49/92 (53%), Gaps = 1/92 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS L+ IA+ L D + ++ +T AL+ G V I GFGSF VR RAAR
Sbjct: 1 MNKSDLVAAIAE-TSGLTKADAARALDATTGAITSALSGGDNVAITGFGSFLVRDRAART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P I ++ VP F+AGK LKE +N
Sbjct: 60 GRNPQTGASIQIKASKVPAFKAGKLLKESVNK 91
>gi|311280174|ref|YP_003942405.1| integration host factor, beta subunit [Enterobacter cloacae SCF1]
gi|308749369|gb|ADO49121.1| integration host factor, beta subunit [Enterobacter cloacae SCF1]
Length = 94
Score = 107 bits (267), Expect = 7e-22, Method: Composition-based stats.
Identities = 40/91 (43%), Positives = 53/91 (58%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI +A + + + VE V +LE M LA G R+EIRGFGSFS+ RA R+
Sbjct: 1 MTKSELIERLASQQSHIPAKAVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRV 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + +E K VP F+ GK L++R N
Sbjct: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRAN 91
>gi|197284030|ref|YP_002149902.1| DNA-binding protein HU-beta [Proteus mirabilis HI4320]
gi|194681517|emb|CAR40401.1| DNA-binding protein HU-beta [Proteus mirabilis HI4320]
Length = 91
Score = 107 bits (267), Expect = 7e-22, Method: Composition-based stats.
Identities = 36/92 (39%), Positives = 52/92 (56%), Gaps = 1/92 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI IA N + ++V+ ++ +T++L G V + GFG+F+VR RAAR
Sbjct: 1 MNKTQLIDKIAA-NADITKAAAGRVVDAMVASITESLQKGDDVALVGFGTFTVRDRAART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P K I + VP FRAGK LK+ +N
Sbjct: 60 GRNPQTGKEIQIAAAKVPAFRAGKGLKDAVNQ 91
>gi|54309795|ref|YP_130815.1| putative nucleoid DNA-binding protein [Photobacterium profundum
SS9]
gi|46914233|emb|CAG21013.1| putative bacterial nucleoid DNA-binding protein [Photobacterium
profundum SS9]
Length = 103
Score = 107 bits (267), Expect = 7e-22, Method: Composition-based stats.
Identities = 29/90 (32%), Positives = 51/90 (56%), Gaps = 1/90 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ L+ IA+ + ++ + ++ ++ ++ L +G +V + GFG+FSVR RAAR
Sbjct: 14 NKTQLVDKIAE-SADISKASAGRALDAFIDAVSGTLKDGDQVALVGFGTFSVRDRAARTG 72
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + I + VP F+ GK LK+ +N
Sbjct: 73 RNPQTGEEIQIAAAKVPGFKPGKALKDSVN 102
>gi|240141766|ref|YP_002966245.1| integration host factor (IHF) like DNA-binding protein
[Methylobacterium extorquens AM1]
gi|240012945|gb|ACS44168.1| integration host factor (IHF) like DNA-binding protein
[Methylobacterium extorquens AM1]
Length = 163
Score = 107 bits (267), Expect = 7e-22, Method: Composition-based stats.
Identities = 38/92 (41%), Positives = 55/92 (59%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
MI+S L+ +A +NP L +D E +V+ +L + AL G RVEIRGFG+FS + AR
Sbjct: 59 MIRSELVTRLAAQNPHLYEKDCEAVVSAVLARIEDALVAGDRVEIRGFGAFSTKDIRARQ 118
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P + + V EK FR GK +++RL +
Sbjct: 119 GRNPRTGESVLVAEKKAVQFRPGKGMRQRLKA 150
>gi|161503890|ref|YP_001571002.1| integration host factor subunit beta [Salmonella enterica subsp.
arizonae serovar 62:z4,z23:-- str. RSK2980]
gi|189045041|sp|A9MHX0|IHFB_SALAR RecName: Full=Integration host factor subunit beta;
Short=IHF-beta
gi|160865237|gb|ABX21860.1| hypothetical protein SARI_01980 [Salmonella enterica subsp.
arizonae serovar 62:z4,z23:--]
Length = 94
Score = 107 bits (267), Expect = 7e-22, Method: Composition-based stats.
Identities = 40/91 (43%), Positives = 52/91 (57%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI +A + + + VE V +LE M LA G R+EIRGFGSFS+ RA R
Sbjct: 1 MTKSELIERLASQQSHIPAKAVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + +E K VP F+ GK L++R N
Sbjct: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRAN 91
>gi|322436183|ref|YP_004218395.1| histone family protein DNA-binding protein [Acidobacterium sp.
MP5ACTX9]
gi|321163910|gb|ADW69615.1| histone family protein DNA-binding protein [Acidobacterium sp.
MP5ACTX9]
Length = 108
Score = 107 bits (267), Expect = 7e-22, Method: Composition-based stats.
Identities = 34/93 (36%), Positives = 53/93 (56%), Gaps = 1/93 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ L+ + L +D E IV++L + + AL +G ++EIRGFGSF R+R +R+
Sbjct: 1 MTKADLVDKV-TSLGDLTRRDGEVIVDLLFDSVIGALKSGDKIEIRGFGSFRTRQRNSRI 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSP 93
R P + V K VPFF+ K L++ +N
Sbjct: 60 GRNPKTGAKVDVPAKKVPFFKPSKELRDLVNPK 92
>gi|188534629|ref|YP_001908426.1| HopD, DNA-binding protein HU-beta (synonym HupB) [Erwinia
tasmaniensis Et1/99]
gi|188029671|emb|CAO97550.1| HopD, DNA-binding protein HU-beta (synonym HupB) [Erwinia
tasmaniensis Et1/99]
Length = 90
Score = 107 bits (267), Expect = 7e-22, Method: Composition-based stats.
Identities = 35/91 (38%), Positives = 54/91 (59%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI IA + ++ ++++ + +T++L G V + GFG+FSVR+RA R+
Sbjct: 1 MNKSELIDKIAT-DADISKAAAGRVLDAFIGSVTESLQAGDEVALVGFGTFSVRERAERV 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P K I++ VP FRAGK LK+ +N
Sbjct: 60 GRNPQTGKEITIAAGKVPGFRAGKTLKDAVN 90
>gi|215486037|ref|YP_002328468.1| integration host factor subunit beta [Escherichia coli O127:H6
str. E2348/69]
gi|254803532|sp|B7UMZ8|IHFB_ECO27 RecName: Full=Integration host factor subunit beta;
Short=IHF-beta
gi|215264109|emb|CAS08453.1| integration host factor (IHF), DNA-binding protein, beta subunit
[Escherichia coli O127:H6 str. E2348/69]
Length = 94
Score = 107 bits (267), Expect = 7e-22, Method: Composition-based stats.
Identities = 40/91 (43%), Positives = 52/91 (57%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI +A + + + VE V +LE M LA G R+EIRGFGSFS+ RA R
Sbjct: 1 MTKSELIERLATQQSHIPAKTVEDAVKDMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + +E K VP F+ GK L++R N
Sbjct: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRAN 91
>gi|83745916|ref|ZP_00942973.1| DNA-binding protein HU [Ralstonia solanacearum UW551]
gi|83727606|gb|EAP74727.1| DNA-binding protein HU [Ralstonia solanacearum UW551]
Length = 123
Score = 106 bits (266), Expect = 8e-22, Method: Composition-based stats.
Identities = 31/91 (34%), Positives = 49/91 (53%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI +A + ++ + ++ L+ + AL +GG V + GFG+F V +R+AR
Sbjct: 34 MNKTDLIDHVAAQT-DMSKAAAGRAIDALIGGIKDALCDGGSVTLVGFGTFLVGQRSARA 92
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P I +E V F+ GK LK+ LN
Sbjct: 93 GRNPRTGATIKIEGAKVAKFKPGKALKDALN 123
>gi|332532267|ref|ZP_08408148.1| DNA-binding protein HU-beta [Pseudoalteromonas haloplanktis
ANT/505]
gi|332038365|gb|EGI74810.1| DNA-binding protein HU-beta [Pseudoalteromonas haloplanktis
ANT/505]
Length = 90
Score = 106 bits (266), Expect = 8e-22, Method: Composition-based stats.
Identities = 34/91 (37%), Positives = 53/91 (58%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI IA + ++ + ++ +E ++ AL +G V + GFG+FSVR+RAAR
Sbjct: 1 MNKSQLIDQIAA-DADISKAAAGRALDSFIESVSGALKDGDSVALVGFGTFSVRERAARS 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + I + +P F+AGK LK+ +N
Sbjct: 60 GRNPQTGETIQIAAATIPAFKAGKALKDAVN 90
>gi|227535136|ref|ZP_03965185.1| non-specific DNA-binding protein HBsu [Lactobacillus paracasei
subsp. paracasei ATCC 25302]
gi|227187181|gb|EEI67248.1| non-specific DNA-binding protein HBsu [Lactobacillus paracasei
subsp. paracasei ATCC 25302]
Length = 129
Score = 106 bits (266), Expect = 8e-22, Method: Composition-based stats.
Identities = 30/90 (33%), Positives = 48/90 (53%), Gaps = 1/90 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ LI ++A L +D V+ + + +L+ G +V++ GFG+F VR+RAAR
Sbjct: 41 NKAELIESVATAT-GLTKKDATAAVDAVFGSIQDSLSKGDKVQLIGFGNFEVRERAARKG 99
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P I + VP F+ GK LK+ +
Sbjct: 100 RNPQTGAEIKIPASKVPAFKPGKALKDAVK 129
>gi|22126657|ref|NP_670080.1| integration host factor subunit beta [Yersinia pestis KIM 10]
gi|45441027|ref|NP_992566.1| integration host factor subunit beta [Yersinia pestis biovar
Microtus str. 91001]
gi|51595758|ref|YP_069949.1| integration host factor subunit beta [Yersinia pseudotuberculosis
IP 32953]
gi|108806681|ref|YP_650597.1| integration host factor subunit beta [Yersinia pestis Antiqua]
gi|108812745|ref|YP_648512.1| integration host factor subunit beta [Yersinia pestis Nepal516]
gi|145599574|ref|YP_001163650.1| integration host factor subunit beta [Yersinia pestis Pestoides
F]
gi|149366650|ref|ZP_01888684.1| integration host factor beta-subunit [Yersinia pestis CA88-4125]
gi|153947721|ref|YP_001401544.1| integration host factor subunit beta [Yersinia pseudotuberculosis
IP 31758]
gi|162421385|ref|YP_001606430.1| integration host factor subunit beta [Yersinia pestis Angola]
gi|165924753|ref|ZP_02220585.1| integration host factor, beta subunit [Yersinia pestis biovar
Orientalis str. F1991016]
gi|165938957|ref|ZP_02227510.1| integration host factor, beta subunit [Yersinia pestis biovar
Orientalis str. IP275]
gi|166009945|ref|ZP_02230843.1| integration host factor, beta subunit [Yersinia pestis biovar
Antiqua str. E1979001]
gi|166211556|ref|ZP_02237591.1| integration host factor, beta subunit [Yersinia pestis biovar
Antiqua str. B42003004]
gi|167399912|ref|ZP_02305430.1| integration host factor, beta subunit [Yersinia pestis biovar
Antiqua str. UG05-0454]
gi|167419646|ref|ZP_02311399.1| integration host factor, beta subunit [Yersinia pestis biovar
Orientalis str. MG05-1020]
gi|167424246|ref|ZP_02315999.1| integration host factor, beta subunit [Yersinia pestis biovar
Mediaevalis str. K1973002]
gi|167470895|ref|ZP_02335599.1| integration host factor, beta subunit [Yersinia pestis FV-1]
gi|170024892|ref|YP_001721397.1| integration host factor subunit beta [Yersinia pseudotuberculosis
YPIII]
gi|186894836|ref|YP_001871948.1| integration host factor subunit beta [Yersinia pseudotuberculosis
PB1/+]
gi|218928541|ref|YP_002346416.1| integration host factor subunit beta [Yersinia pestis CO92]
gi|229841363|ref|ZP_04461522.1| integration host factor (IHF), DNA-binding protein, beta subunit
[Yersinia pestis biovar Orientalis str. PEXU2]
gi|229843468|ref|ZP_04463614.1| integration host factor (IHF), DNA-binding protein, beta subunit
[Yersinia pestis biovar Orientalis str. India 195]
gi|229895841|ref|ZP_04511011.1| integration host factor (IHF), DNA-binding protein, beta subunit
[Yersinia pestis Pestoides A]
gi|229903153|ref|ZP_04518266.1| integration host factor (IHF), DNA-binding protein, beta subunit
[Yersinia pestis Nepal516]
gi|238757620|ref|ZP_04618804.1| Integration host factor subunit beta [Yersinia aldovae ATCC
35236]
gi|270486948|ref|ZP_06204022.1| integration host factor subunit beta [Yersinia pestis KIM D27]
gi|21362608|sp|Q8ZGB1|IHFB_YERPE RecName: Full=Integration host factor subunit beta;
Short=IHF-beta
gi|81691814|sp|Q66CI5|IHFB_YERPS RecName: Full=Integration host factor subunit beta;
Short=IHF-beta
gi|123073279|sp|Q1CGG8|IHFB_YERPN RecName: Full=Integration host factor subunit beta;
Short=IHF-beta
gi|123372652|sp|Q1CA70|IHFB_YERPA RecName: Full=Integration host factor subunit beta;
Short=IHF-beta
gi|166975897|sp|A7FJW6|IHFB_YERP3 RecName: Full=Integration host factor subunit beta;
Short=IHF-beta
gi|166975898|sp|A4TN15|IHFB_YERPP RecName: Full=Integration host factor subunit beta;
Short=IHF-beta
gi|226709822|sp|B2KA26|IHFB_YERPB RecName: Full=Integration host factor subunit beta;
Short=IHF-beta
gi|226709823|sp|A9R7I5|IHFB_YERPG RecName: Full=Integration host factor subunit beta;
Short=IHF-beta
gi|226709824|sp|B1JRD6|IHFB_YERPY RecName: Full=Integration host factor subunit beta;
Short=IHF-beta
gi|21959671|gb|AAM86331.1|AE013881_1 integration host factor (IHF), beta subunit [Yersinia pestis KIM
10]
gi|45435886|gb|AAS61443.1| integration host factor beta-subunit [Yersinia pestis biovar
Microtus str. 91001]
gi|51589040|emb|CAH20658.1| integration host factor beta-subunit [Yersinia pseudotuberculosis
IP 32953]
gi|108776393|gb|ABG18912.1| integration host factor beta-subunit [Yersinia pestis Nepal516]
gi|108778594|gb|ABG12652.1| integration host factor beta-subunit [Yersinia pestis Antiqua]
gi|115347152|emb|CAL20045.1| integration host factor beta-subunit [Yersinia pestis CO92]
gi|145211270|gb|ABP40677.1| integration host factor beta-subunit [Yersinia pestis Pestoides
F]
gi|149291024|gb|EDM41099.1| integration host factor beta-subunit [Yersinia pestis CA88-4125]
gi|152959216|gb|ABS46677.1| integration host factor, beta subunit [Yersinia
pseudotuberculosis IP 31758]
gi|162354200|gb|ABX88148.1| integration host factor, beta subunit [Yersinia pestis Angola]
gi|165913104|gb|EDR31728.1| integration host factor, beta subunit [Yersinia pestis biovar
Orientalis str. IP275]
gi|165923813|gb|EDR40945.1| integration host factor, beta subunit [Yersinia pestis biovar
Orientalis str. F1991016]
gi|165991341|gb|EDR43642.1| integration host factor, beta subunit [Yersinia pestis biovar
Antiqua str. E1979001]
gi|166207327|gb|EDR51807.1| integration host factor, beta subunit [Yersinia pestis biovar
Antiqua str. B42003004]
gi|166962387|gb|EDR58408.1| integration host factor, beta subunit [Yersinia pestis biovar
Orientalis str. MG05-1020]
gi|167050620|gb|EDR62028.1| integration host factor, beta subunit [Yersinia pestis biovar
Antiqua str. UG05-0454]
gi|167057095|gb|EDR66858.1| integration host factor, beta subunit [Yersinia pestis biovar
Mediaevalis str. K1973002]
gi|169751426|gb|ACA68944.1| integration host factor, beta subunit [Yersinia
pseudotuberculosis YPIII]
gi|186697862|gb|ACC88491.1| integration host factor, beta subunit [Yersinia
pseudotuberculosis PB1/+]
gi|229678923|gb|EEO75026.1| integration host factor (IHF), DNA-binding protein, beta subunit
[Yersinia pestis Nepal516]
gi|229689815|gb|EEO81876.1| integration host factor (IHF), DNA-binding protein, beta subunit
[Yersinia pestis biovar Orientalis str. India 195]
gi|229697729|gb|EEO87776.1| integration host factor (IHF), DNA-binding protein, beta subunit
[Yersinia pestis biovar Orientalis str. PEXU2]
gi|229700764|gb|EEO88793.1| integration host factor (IHF), DNA-binding protein, beta subunit
[Yersinia pestis Pestoides A]
gi|238704125|gb|EEP96658.1| Integration host factor subunit beta [Yersinia aldovae ATCC
35236]
gi|270335452|gb|EFA46229.1| integration host factor subunit beta [Yersinia pestis KIM D27]
gi|320015748|gb|ADV99319.1| integration host factor (IHF), DNA-binding protein, beta subunit
[Yersinia pestis biovar Medievalis str. Harbin 35]
Length = 94
Score = 106 bits (266), Expect = 8e-22, Method: Composition-based stats.
Identities = 40/91 (43%), Positives = 53/91 (58%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI +A + + + VE V +LE M LA G R+EIRGFGSFS+ RA R+
Sbjct: 1 MTKSELIERLAGQQSHVPAKVVEDAVKEMLEHMAGTLAEGERIEIRGFGSFSLHYRAPRV 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + +E K VP F+ GK L++R N
Sbjct: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRAN 91
>gi|152969496|ref|YP_001334605.1| integration host factor subunit beta [Klebsiella pneumoniae
subsp. pneumoniae MGH 78578]
gi|238893968|ref|YP_002918702.1| integration host factor subunit beta [Klebsiella pneumoniae
NTUH-K2044]
gi|262040989|ref|ZP_06014211.1| integration host factor subunit beta [Klebsiella pneumoniae
subsp. rhinoscleromatis ATCC 13884]
gi|330014029|ref|ZP_08307845.1| integration host factor, beta subunit [Klebsiella sp. MS 92-3]
gi|166918553|sp|A6T704|IHFB_KLEP7 RecName: Full=Integration host factor subunit beta;
Short=IHF-beta
gi|150954345|gb|ABR76375.1| integration host factor beta subunit [Klebsiella pneumoniae
subsp. pneumoniae MGH 78578]
gi|238546284|dbj|BAH62635.1| integration host factor beta subunit [Klebsiella pneumoniae
subsp. pneumoniae NTUH-K2044]
gi|259041683|gb|EEW42732.1| integration host factor subunit beta [Klebsiella pneumoniae
subsp. rhinoscleromatis ATCC 13884]
gi|328533286|gb|EGF60038.1| integration host factor, beta subunit [Klebsiella sp. MS 92-3]
Length = 95
Score = 106 bits (266), Expect = 8e-22, Method: Composition-based stats.
Identities = 40/91 (43%), Positives = 52/91 (57%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI +A + + + VE V +LE M LA G R+EIRGFGSFS+ RA R
Sbjct: 1 MTKSELIERLASQQSHIPAKAVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + +E K VP F+ GK L++R N
Sbjct: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRAN 91
>gi|117620625|ref|YP_856545.1| DNA-binding protein HU-beta [Aeromonas hydrophila subsp.
hydrophila ATCC 7966]
gi|145298874|ref|YP_001141715.1| nucleoid DNA-binding protein HU-beta [Aeromonas salmonicida
subsp. salmonicida A449]
gi|330829915|ref|YP_004392867.1| histone-like DNA-binding protein [Aeromonas veronii B565]
gi|117562032|gb|ABK38980.1| DNA-binding protein HU-beta [Aeromonas hydrophila subsp.
hydrophila ATCC 7966]
gi|142851646|gb|ABO89967.1| Bacterial nucleoid DNA-binding protein HU-beta [Aeromonas
salmonicida subsp. salmonicida A449]
gi|328805051|gb|AEB50250.1| histone-like DNA-binding protein [Aeromonas veronii B565]
Length = 90
Score = 106 bits (266), Expect = 8e-22, Method: Composition-based stats.
Identities = 33/91 (36%), Positives = 51/91 (56%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI IA ++ + ++ ++ + +AL G +V + GFG+F+VR+RAAR
Sbjct: 1 MNKSQLIDKIAD-GADISKAAAGRALDAFIDAVGEALKEGDQVALVGFGTFAVRERAARS 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P I + VP F+AGK LK+ +N
Sbjct: 60 GRNPQTGATIEIAAGKVPAFKAGKALKDAVN 90
>gi|117618262|ref|YP_856345.1| integration host factor subunit beta [Aeromonas hydrophila subsp.
hydrophila ATCC 7966]
gi|166918537|sp|A0KJ94|IHFB_AERHH RecName: Full=Integration host factor subunit beta;
Short=IHF-beta
gi|117559669|gb|ABK36617.1| integration host factor, beta subunit [Aeromonas hydrophila
subsp. hydrophila ATCC 7966]
Length = 94
Score = 106 bits (266), Expect = 8e-22, Method: Composition-based stats.
Identities = 40/91 (43%), Positives = 54/91 (59%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI +A + +DVE + +LE+M L NG R+EIRGFGSFS+ RA R+
Sbjct: 1 MTKSDLIEQLAASRMHMPAKDVEAAIKEILEQMASTLQNGDRIEIRGFGSFSLHYRAPRV 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + + K VP F+ GK L+ER+N
Sbjct: 61 GRNPKTGDKVELTGKYVPHFKPGKELRERVN 91
>gi|319898779|ref|YP_004158872.1| DNA-binding protein [Bartonella clarridgeiae 73]
gi|319402743|emb|CBI76290.1| DNA-binding protein [Bartonella clarridgeiae 73]
Length = 92
Score = 106 bits (266), Expect = 8e-22, Method: Composition-based stats.
Identities = 36/93 (38%), Positives = 53/93 (56%), Gaps = 1/93 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS L+ ++A+K ++ V+ + +T+ALA+GG V + GFGSF V RAA
Sbjct: 1 MNKSELVNSVAEK-AGISKAQAGASVDAFIASVTEALASGGDVRLPGFGSFEVSHRAATK 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSP 93
R P I++ + VP F AGK LKE +N+
Sbjct: 60 GRNPSTGAEITIPARSVPKFSAGKGLKEAVNNK 92
>gi|109899438|ref|YP_662693.1| histone-like DNA-binding protein [Pseudoalteromonas atlantica
T6c]
gi|332305577|ref|YP_004433428.1| histone family protein DNA-binding protein [Glaciecola
agarilytica 4H-3-7+YE-5]
gi|109701719|gb|ABG41639.1| histone-like DNA-binding protein [Pseudoalteromonas atlantica
T6c]
gi|332172906|gb|AEE22160.1| histone family protein DNA-binding protein [Glaciecola
agarilytica 4H-3-7+YE-5]
Length = 90
Score = 106 bits (266), Expect = 8e-22, Method: Composition-based stats.
Identities = 36/91 (39%), Positives = 52/91 (57%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI IA + ++ + ++ L + +T AL G +V + GFG+FSVR+RAAR
Sbjct: 1 MNKSQLIDQIAA-SADISKAASGRALDALTDAITAALKEGDQVALVGFGTFSVRERAARS 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + I + VP F+AGK LK+ N
Sbjct: 60 GRNPQTGETIQISAAKVPSFKAGKALKDACN 90
>gi|156935007|ref|YP_001438923.1| transcriptional regulator HU subunit beta [Cronobacter sakazakii
ATCC BAA-894]
gi|156533261|gb|ABU78087.1| hypothetical protein ESA_02858 [Cronobacter sakazakii ATCC
BAA-894]
Length = 90
Score = 106 bits (266), Expect = 9e-22, Method: Composition-based stats.
Identities = 37/91 (40%), Positives = 55/91 (60%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI IA ++ + ++ L++ +T++L +G V + GFG+FSVR+RAAR
Sbjct: 1 MNKSQLIDKIAA-GADISKAAAGRALDALIDSVTESLQSGDEVALVGFGTFSVRERAART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P K I++ VP FRAGK LK+ +N
Sbjct: 60 GRNPQTGKEITIAAAKVPGFRAGKALKDAVN 90
>gi|114330422|ref|YP_746644.1| integration host factor, beta subunit [Nitrosomonas eutropha C91]
gi|122314557|sp|Q0AIZ2|IHFB_NITEC RecName: Full=Integration host factor subunit beta;
Short=IHF-beta
gi|114307436|gb|ABI58679.1| integration host factor, beta subunit [Nitrosomonas eutropha C91]
Length = 105
Score = 106 bits (266), Expect = 9e-22, Method: Composition-based stats.
Identities = 40/98 (40%), Positives = 64/98 (65%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI +A++ P+L +D E +V ++L+ M ++LA G R+EIRGFGSF + R +R+
Sbjct: 1 MTKSELISKLAERFPQLLAKDAELVVKIILDAMAKSLARGERIEIRGFGSFDLNYRPSRV 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDSTLS 98
R P + + + V EK VP F+AGK ++E ++S +
Sbjct: 61 GRNPKSGEKVHVPEKYVPHFKAGKKMRELIDSSHKQHN 98
>gi|50120090|ref|YP_049257.1| transcriptional regulator HU subunit beta [Pectobacterium
atrosepticum SCRI1043]
gi|227113468|ref|ZP_03827124.1| transcriptional regulator HU subunit beta [Pectobacterium
carotovorum subsp. brasiliensis PBR1692]
gi|227328851|ref|ZP_03832875.1| transcriptional regulator HU subunit beta [Pectobacterium
carotovorum subsp. carotovorum WPP14]
gi|253687446|ref|YP_003016636.1| histone family protein DNA-binding protein [Pectobacterium
carotovorum subsp. carotovorum PC1]
gi|261822504|ref|YP_003260610.1| transcriptional regulator HU subunit beta [Pectobacterium
wasabiae WPP163]
gi|49610616|emb|CAG74061.1| DNA-binding protein HU-beta [Pectobacterium atrosepticum
SCRI1043]
gi|251754024|gb|ACT12100.1| histone family protein DNA-binding protein [Pectobacterium
carotovorum subsp. carotovorum PC1]
gi|261606517|gb|ACX89003.1| histone family protein DNA-binding protein [Pectobacterium
wasabiae WPP163]
Length = 90
Score = 106 bits (266), Expect = 9e-22, Method: Composition-based stats.
Identities = 37/91 (40%), Positives = 55/91 (60%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI IA + ++ ++++ ++ +T++L G V + GFG+FSVR+RAAR
Sbjct: 1 MNKSQLIDKIAA-DADISKAAAGRVLDAIIGSVTESLKEGDDVALVGFGTFSVRERAART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P K IS+ VP FRAGK LK+ +N
Sbjct: 60 GRNPQTGKEISIPAAKVPGFRAGKTLKDAVN 90
>gi|291616552|ref|YP_003519294.1| HupB [Pantoea ananatis LMG 20103]
gi|317047178|ref|YP_004114826.1| histone family protein DNA-binding protein [Pantoea sp. At-9b]
gi|291151582|gb|ADD76166.1| HupB [Pantoea ananatis LMG 20103]
gi|316948795|gb|ADU68270.1| histone family protein DNA-binding protein [Pantoea sp. At-9b]
gi|327392984|dbj|BAK10406.1| DNA-binding protein HU-beta HupB [Pantoea ananatis AJ13355]
Length = 93
Score = 106 bits (266), Expect = 9e-22, Method: Composition-based stats.
Identities = 35/90 (38%), Positives = 52/90 (57%), Gaps = 1/90 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
KS LI IA + ++ ++++ + ++ AL G V + GFG+FSVR+RAAR
Sbjct: 5 NKSQLIDKIAA-DADISKAAAGRVLDAFMGSVSDALKGGDEVALVGFGTFSVRERAARTG 63
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P K I++ VP FRAGK LK+ +N
Sbjct: 64 RNPQTGKEITIPAGKVPGFRAGKALKDAVN 93
>gi|315658244|ref|ZP_07911116.1| DNA-binding protein HU [Staphylococcus lugdunensis M23590]
gi|315496573|gb|EFU84896.1| DNA-binding protein HU [Staphylococcus lugdunensis M23590]
Length = 105
Score = 106 bits (266), Expect = 9e-22, Method: Composition-based stats.
Identities = 33/91 (36%), Positives = 52/91 (57%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI +A++ L + V+ + E + +L+ G +V++ GFG+F VR+RAAR
Sbjct: 16 MNKTDLINAVAEQ-ADLTKKQAGSAVDAVFESIQTSLSKGEKVQLIGFGNFEVRERAARK 74
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P K I + VP F+AGK LK+ +
Sbjct: 75 GRNPQTGKEIEIPASKVPAFKAGKALKDAVK 105
>gi|218548428|ref|YP_002382219.1| integration host factor subunit beta [Escherichia fergusonii ATCC
35469]
gi|226709795|sp|B7LN74|IHFB_ESCF3 RecName: Full=Integration host factor subunit beta;
Short=IHF-beta
gi|218355969|emb|CAQ88585.1| integration host factor (IHF), DNA-binding protein, beta subunit
[Escherichia fergusonii ATCC 35469]
gi|324113757|gb|EGC07732.1| integration host protein [Escherichia fergusonii B253]
gi|325496851|gb|EGC94710.1| integration host factor subunit beta [Escherichia fergusonii
ECD227]
Length = 94
Score = 106 bits (266), Expect = 9e-22, Method: Composition-based stats.
Identities = 40/91 (43%), Positives = 52/91 (57%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI +A + + + VE V +LE M LA G R+EIRGFGSFS+ RA R
Sbjct: 1 MTKSELIERLATQQSHIPAKVVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + +E K VP F+ GK L++R N
Sbjct: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRAN 91
>gi|326408175|gb|ADZ65240.1| integration host factor subunit beta [Brucella melitensis M28]
gi|326537888|gb|ADZ86103.1| integration host factor, beta subunit [Brucella melitensis M5-90]
Length = 94
Score = 106 bits (266), Expect = 9e-22, Method: Composition-based stats.
Identities = 48/91 (52%), Positives = 62/91 (68%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
MIKS L+ IA +NP L +DV IV + +E+T ALA G RVE+R FG+FSV+ R AR
Sbjct: 1 MIKSELVQIIASRNPHLFQRDVVNIVGAVFDEITNALAEGNRVELRSFGAFSVKNRPARS 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + + VEEK VPFF+ GK L++RLN
Sbjct: 61 GRNPRTGETVDVEEKWVPFFKTGKKLRDRLN 91
>gi|292490922|ref|YP_003526361.1| histone family protein DNA-binding protein [Nitrosococcus
halophilus Nc4]
gi|291579517|gb|ADE13974.1| histone family protein DNA-binding protein [Nitrosococcus
halophilus Nc4]
Length = 90
Score = 106 bits (266), Expect = 9e-22, Method: Composition-based stats.
Identities = 37/91 (40%), Positives = 55/91 (60%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI ++A+ + L + V+ ++E +T AL G +V I GFG+FSVR RAAR
Sbjct: 1 MNKSELIESVAE-SGDLTKAAAARAVDSVIEAVTDALRRGDQVTIVGFGTFSVRDRAART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + I ++ +P F+AGK LK+ +N
Sbjct: 60 GRNPQTGEEIKIKASKIPSFKAGKALKDAVN 90
>gi|16759852|ref|NP_455469.1| integration host factor subunit beta [Salmonella enterica subsp.
enterica serovar Typhi str. CT18]
gi|16764342|ref|NP_459957.1| integration host factor subunit beta [Salmonella enterica subsp.
enterica serovar Typhimurium str. LT2]
gi|29142375|ref|NP_805717.1| integration host factor subunit beta [Salmonella enterica subsp.
enterica serovar Typhi str. Ty2]
gi|56413968|ref|YP_151043.1| integration host factor subunit beta [Salmonella enterica subsp.
enterica serovar Paratyphi A str. ATCC 9150]
gi|62179506|ref|YP_215923.1| integration host factor subunit beta [Salmonella enterica subsp.
enterica serovar Choleraesuis str. SC-B67]
gi|157146401|ref|YP_001453720.1| integration host factor subunit beta [Citrobacter koseri ATCC
BAA-895]
gi|161614782|ref|YP_001588747.1| integration host factor subunit beta [Salmonella enterica subsp.
enterica serovar Paratyphi B str. SPB7]
gi|167553021|ref|ZP_02346771.1| integration host factor, beta subunit [Salmonella enterica subsp.
enterica serovar Saintpaul str. SARA29]
gi|167994928|ref|ZP_02576018.1| integration host factor, beta subunit [Salmonella enterica subsp.
enterica serovar 4,[5],12:i:- str. CVM23701]
gi|168233395|ref|ZP_02658453.1| integration host factor, beta subunit [Salmonella enterica subsp.
enterica serovar Kentucky str. CDC 191]
gi|168237083|ref|ZP_02662141.1| integration host factor, beta subunit [Salmonella enterica subsp.
enterica serovar Schwarzengrund str. SL480]
gi|168243747|ref|ZP_02668679.1| integration host factor, beta subunit [Salmonella enterica subsp.
enterica serovar Heidelberg str. SL486]
gi|168263526|ref|ZP_02685499.1| integration host factor, beta subunit [Salmonella enterica subsp.
enterica serovar Hadar str. RI_05P066]
gi|168466573|ref|ZP_02700435.1| integration host factor, beta subunit [Salmonella enterica subsp.
enterica serovar Newport str. SL317]
gi|168822093|ref|ZP_02834093.1| integration host factor, beta subunit [Salmonella enterica subsp.
enterica serovar Weltevreden str. HI_N05-537]
gi|194442716|ref|YP_002040180.1| integration host factor subunit beta [Salmonella enterica subsp.
enterica serovar Newport str. SL254]
gi|194450144|ref|YP_002044974.1| integration host factor subunit beta [Salmonella enterica subsp.
enterica serovar Heidelberg str. SL476]
gi|194470393|ref|ZP_03076377.1| integration host factor, beta subunit [Salmonella enterica subsp.
enterica serovar Kentucky str. CVM29188]
gi|194734686|ref|YP_002114033.1| integration host factor subunit beta [Salmonella enterica subsp.
enterica serovar Schwarzengrund str. CVM19633]
gi|197248861|ref|YP_002145900.1| integration host factor subunit beta [Salmonella enterica subsp.
enterica serovar Agona str. SL483]
gi|197263951|ref|ZP_03164025.1| integration host factor, beta subunit [Salmonella enterica subsp.
enterica serovar Saintpaul str. SARA23]
gi|197362891|ref|YP_002142528.1| integration host factor subunit beta [Salmonella enterica subsp.
enterica serovar Paratyphi A str. AKU_12601]
gi|198243808|ref|YP_002214906.1| integration host factor subunit beta [Salmonella enterica subsp.
enterica serovar Dublin str. CT_02021853]
gi|200390103|ref|ZP_03216714.1| integration host factor, beta subunit [Salmonella enterica subsp.
enterica serovar Virchow str. SL491]
gi|204929822|ref|ZP_03220843.1| integration host factor, beta subunit [Salmonella enterica subsp.
enterica serovar Javiana str. GA_MM04042433]
gi|205352189|ref|YP_002225990.1| integration host factor subunit beta [Salmonella enterica subsp.
enterica serovar Gallinarum str. 287/91]
gi|207856373|ref|YP_002243024.1| integration host factor subunit beta [Salmonella enterica subsp.
enterica serovar Enteritidis str. P125109]
gi|213023562|ref|ZP_03338009.1| integration host factor subunit beta [Salmonella enterica subsp.
enterica serovar Typhi str. 404ty]
gi|213161606|ref|ZP_03347316.1| integration host factor subunit beta [Salmonella enterica subsp.
enterica serovar Typhi str. E00-7866]
gi|213416827|ref|ZP_03349971.1| integration host factor subunit beta [Salmonella enterica subsp.
enterica serovar Typhi str. E01-6750]
gi|213424599|ref|ZP_03357382.1| integration host factor subunit beta [Salmonella enterica subsp.
enterica serovar Typhi str. E02-1180]
gi|213579894|ref|ZP_03361720.1| integration host factor subunit beta [Salmonella enterica subsp.
enterica serovar Typhi str. E98-0664]
gi|213649374|ref|ZP_03379427.1| integration host factor subunit beta [Salmonella enterica subsp.
enterica serovar Typhi str. J185]
gi|213852006|ref|ZP_03381538.1| integration host factor subunit beta [Salmonella enterica subsp.
enterica serovar Typhi str. M223]
gi|224582791|ref|YP_002636589.1| integration host factor subunit beta [Salmonella enterica subsp.
enterica serovar Paratyphi C strain RKS4594]
gi|238913245|ref|ZP_04657082.1| integration host factor subunit beta [Salmonella enterica subsp.
enterica serovar Tennessee str. CDC07-0191]
gi|283784738|ref|YP_003364603.1| integration host factor beta-subunit (IHF-beta) [Citrobacter
rodentium ICC168]
gi|289825855|ref|ZP_06545023.1| integration host factor subunit beta [Salmonella enterica subsp.
enterica serovar Typhi str. E98-3139]
gi|54037414|sp|P64395|IHFB_SALTI RecName: Full=Integration host factor subunit beta;
Short=IHF-beta
gi|54041369|sp|P64394|IHFB_SALTY RecName: Full=Integration host factor subunit beta;
Short=IHF-beta
gi|75505813|sp|Q57R19|IHFB_SALCH RecName: Full=Integration host factor subunit beta;
Short=IHF-beta
gi|81677856|sp|Q5PGG9|IHFB_SALPA RecName: Full=Integration host factor subunit beta;
Short=IHF-beta
gi|166918543|sp|A8AIH1|IHFB_CITK8 RecName: Full=Integration host factor subunit beta;
Short=IHF-beta
gi|189045042|sp|A9N7V2|IHFB_SALPB RecName: Full=Integration host factor subunit beta;
Short=IHF-beta
gi|226709805|sp|B5F165|IHFB_SALA4 RecName: Full=Integration host factor subunit beta;
Short=IHF-beta
gi|226709806|sp|B5FQ55|IHFB_SALDC RecName: Full=Integration host factor subunit beta;
Short=IHF-beta
gi|226709807|sp|B5QZB6|IHFB_SALEP RecName: Full=Integration host factor subunit beta;
Short=IHF-beta
gi|226709808|sp|B5R8J9|IHFB_SALG2 RecName: Full=Integration host factor subunit beta;
Short=IHF-beta
gi|226709809|sp|B4TD42|IHFB_SALHS RecName: Full=Integration host factor subunit beta;
Short=IHF-beta
gi|226709810|sp|B4T146|IHFB_SALNS RecName: Full=Integration host factor subunit beta;
Short=IHF-beta
gi|226709811|sp|B5BBP5|IHFB_SALPK RecName: Full=Integration host factor subunit beta;
Short=IHF-beta
gi|226709812|sp|B4TRU3|IHFB_SALSV RecName: Full=Integration host factor subunit beta;
Short=IHF-beta
gi|254803539|sp|C0PXU8|IHFB_SALPC RecName: Full=Integration host factor subunit beta;
Short=IHF-beta
gi|25294355|pir||AD0614 integration host factor beta-chain (IHF-beta) [imported] -
Salmonella enterica subsp. enterica serovar Typhi
(strain CT18)
gi|16419494|gb|AAL19916.1| integration host factor (IHF), beta subunit [Salmonella enterica
subsp. enterica serovar Typhimurium str. LT2]
gi|16502145|emb|CAD05382.1| integration host factor beta-subunit (IHF-beta) [Salmonella
enterica subsp. enterica serovar Typhi]
gi|29138005|gb|AAO69566.1| integration host factor beta-subunit [Salmonella enterica subsp.
enterica serovar Typhi str. Ty2]
gi|56128225|gb|AAV77731.1| integration host factor beta-subunit (IHF-beta) [Salmonella
enterica subsp. enterica serovar Paratyphi A str. ATCC
9150]
gi|62127139|gb|AAX64842.1| integration host factor (IHF), beta subunit; site-specific
recombination [Salmonella enterica subsp. enterica
serovar Choleraesuis str. SC-B67]
gi|157083606|gb|ABV13284.1| hypothetical protein CKO_02160 [Citrobacter koseri ATCC BAA-895]
gi|161364146|gb|ABX67914.1| hypothetical protein SPAB_02534 [Salmonella enterica subsp.
enterica serovar Paratyphi B str. SPB7]
gi|194401379|gb|ACF61601.1| integration host factor, beta subunit [Salmonella enterica subsp.
enterica serovar Newport str. SL254]
gi|194408448|gb|ACF68667.1| integration host factor, beta subunit [Salmonella enterica subsp.
enterica serovar Heidelberg str. SL476]
gi|194456757|gb|EDX45596.1| integration host factor, beta subunit [Salmonella enterica subsp.
enterica serovar Kentucky str. CVM29188]
gi|194710188|gb|ACF89409.1| integration host factor, beta subunit [Salmonella enterica subsp.
enterica serovar Schwarzengrund str. CVM19633]
gi|195630987|gb|EDX49573.1| integration host factor, beta subunit [Salmonella enterica subsp.
enterica serovar Newport str. SL317]
gi|197094368|emb|CAR59881.1| integration host factor beta-subunit (IHF-beta) [Salmonella
enterica subsp. enterica serovar Paratyphi A str.
AKU_12601]
gi|197212564|gb|ACH49961.1| integration host factor, beta subunit [Salmonella enterica subsp.
enterica serovar Agona str. SL483]
gi|197242206|gb|EDY24826.1| integration host factor, beta subunit [Salmonella enterica subsp.
enterica serovar Saintpaul str. SARA23]
gi|197289888|gb|EDY29249.1| integration host factor, beta subunit [Salmonella enterica subsp.
enterica serovar Schwarzengrund str. SL480]
gi|197938324|gb|ACH75657.1| integration host factor, beta subunit [Salmonella enterica subsp.
enterica serovar Dublin str. CT_02021853]
gi|199602548|gb|EDZ01094.1| integration host factor, beta subunit [Salmonella enterica subsp.
enterica serovar Virchow str. SL491]
gi|204320816|gb|EDZ06017.1| integration host factor, beta subunit [Salmonella enterica subsp.
enterica serovar Javiana str. GA_MM04042433]
gi|205271970|emb|CAR36814.1| integration host factor beta-subunit (IHF-beta) [Salmonella
enterica subsp. enterica serovar Gallinarum str.
287/91]
gi|205322456|gb|EDZ10295.1| integration host factor, beta subunit [Salmonella enterica subsp.
enterica serovar Saintpaul str. SARA29]
gi|205327271|gb|EDZ14035.1| integration host factor, beta subunit [Salmonella enterica subsp.
enterica serovar 4,[5],12:i:- str. CVM23701]
gi|205332451|gb|EDZ19215.1| integration host factor, beta subunit [Salmonella enterica subsp.
enterica serovar Kentucky str. CDC 191]
gi|205337151|gb|EDZ23915.1| integration host factor, beta subunit [Salmonella enterica subsp.
enterica serovar Heidelberg str. SL486]
gi|205341519|gb|EDZ28283.1| integration host factor, beta subunit [Salmonella enterica subsp.
enterica serovar Weltevreden str. HI_N05-537]
gi|205347707|gb|EDZ34338.1| integration host factor, beta subunit [Salmonella enterica subsp.
enterica serovar Hadar str. RI_05P066]
gi|206708176|emb|CAR32469.1| integration host factor beta-subunit (IHF-beta) [Salmonella
enterica subsp. enterica serovar Enteritidis str.
P125109]
gi|224467318|gb|ACN45148.1| integration host factor beta subunit [Salmonella enterica subsp.
enterica serovar Paratyphi C strain RKS4594]
gi|261246198|emb|CBG24002.1| integration host factor beta-subunit (IHF-beta) [Salmonella
enterica subsp. enterica serovar Typhimurium str.
D23580]
gi|267992720|gb|ACY87605.1| integration host factor subunit beta [Salmonella enterica subsp.
enterica serovar Typhimurium str. 14028S]
gi|282948192|emb|CBG87759.1| integration host factor beta-subunit (IHF-beta) [Citrobacter
rodentium ICC168]
gi|301157525|emb|CBW17015.1| integration host factor beta-subunit (IHF-beta) [Salmonella
enterica subsp. enterica serovar Typhimurium str.
SL1344]
gi|312911968|dbj|BAJ35942.1| integration host factor subunit beta [Salmonella enterica subsp.
enterica serovar Typhimurium str. T000240]
gi|320085221|emb|CBY95007.1| Integration host factor subunit beta IHF-beta [Salmonella
enterica subsp. enterica serovar Weltevreden str.
2007-60-3289-1]
gi|321223305|gb|EFX48374.1| Integration host factor beta subunit [Salmonella enterica subsp.
enterica serovar Typhimurium str. TN061786]
gi|322616412|gb|EFY13321.1| integration host factor subunit beta [Salmonella enterica subsp.
enterica serovar Montevideo str. 315996572]
gi|322619662|gb|EFY16537.1| integration host factor subunit beta [Salmonella enterica subsp.
enterica serovar Montevideo str. 495297-1]
gi|322622642|gb|EFY19487.1| integration host factor subunit beta [Salmonella enterica subsp.
enterica serovar Montevideo str. 495297-3]
gi|322629791|gb|EFY26566.1| integration host factor subunit beta [Salmonella enterica subsp.
enterica serovar Montevideo str. 495297-4]
gi|322632487|gb|EFY29233.1| integration host factor subunit beta [Salmonella enterica subsp.
enterica serovar Montevideo str. 515920-1]
gi|322637018|gb|EFY33721.1| integration host factor subunit beta [Salmonella enterica subsp.
enterica serovar Montevideo str. 515920-2]
gi|322641442|gb|EFY38080.1| integration host factor subunit beta [Salmonella enterica subsp.
enterica serovar Montevideo str. 531954]
gi|322646092|gb|EFY42608.1| integration host factor subunit beta [Salmonella enterica subsp.
enterica serovar Montevideo str. NC_MB110209-0054]
gi|322649606|gb|EFY46037.1| integration host factor subunit beta [Salmonella enterica subsp.
enterica serovar Montevideo str. OH_2009072675]
gi|322654092|gb|EFY50415.1| integration host factor subunit beta [Salmonella enterica subsp.
enterica serovar Montevideo str. CASC_09SCPH15965]
gi|322658624|gb|EFY54886.1| integration host factor subunit beta [Salmonella enterica subsp.
enterica serovar Montevideo str. 19N]
gi|322663481|gb|EFY59683.1| integration host factor subunit beta [Salmonella enterica subsp.
enterica serovar Montevideo str. 81038-01]
gi|322670217|gb|EFY66357.1| integration host factor subunit beta [Salmonella enterica subsp.
enterica serovar Montevideo str. MD_MDA09249507]
gi|322671453|gb|EFY67575.1| integration host factor subunit beta [Salmonella enterica subsp.
enterica serovar Montevideo str. 414877]
gi|322676809|gb|EFY72876.1| integration host factor subunit beta [Salmonella enterica subsp.
enterica serovar Montevideo str. 366867]
gi|322682734|gb|EFY78753.1| integration host factor subunit beta [Salmonella enterica subsp.
enterica serovar Montevideo str. 413180]
gi|322686413|gb|EFY82395.1| integration host factor subunit beta [Salmonella enterica subsp.
enterica serovar Montevideo str. 446600]
gi|322713975|gb|EFZ05546.1| integration host factor subunit beta [Salmonella enterica subsp.
enterica serovar Choleraesuis str. A50]
gi|323129247|gb|ADX16677.1| integration host factor subunit beta [Salmonella enterica subsp.
enterica serovar Typhimurium str. 4/74]
gi|323195936|gb|EFZ81103.1| integration host factor subunit beta [Salmonella enterica subsp.
enterica serovar Montevideo str. 609458-1]
gi|323199776|gb|EFZ84865.1| integration host factor subunit beta [Salmonella enterica subsp.
enterica serovar Montevideo str. 556150-1]
gi|323202769|gb|EFZ87805.1| integration host factor subunit beta [Salmonella enterica subsp.
enterica serovar Montevideo str. 609460]
gi|323209040|gb|EFZ93977.1| integration host factor subunit beta [Salmonella enterica subsp.
enterica serovar Montevideo str. 507440-20]
gi|323211516|gb|EFZ96355.1| integration host factor subunit beta [Salmonella enterica subsp.
enterica serovar Montevideo str. 556152]
gi|323217999|gb|EGA02714.1| integration host factor subunit beta [Salmonella enterica subsp.
enterica serovar Montevideo str. MB101509-0077]
gi|323219928|gb|EGA04404.1| integration host factor subunit beta [Salmonella enterica subsp.
enterica serovar Montevideo str. MB102109-0047]
gi|323226704|gb|EGA10900.1| integration host factor subunit beta [Salmonella enterica subsp.
enterica serovar Montevideo str. MB110209-0055]
gi|323229801|gb|EGA13924.1| integration host factor subunit beta [Salmonella enterica subsp.
enterica serovar Montevideo str. MB111609-0052]
gi|323233026|gb|EGA17122.1| integration host factor subunit beta [Salmonella enterica subsp.
enterica serovar Montevideo str. 2009083312]
gi|323240761|gb|EGA24803.1| integration host factor subunit beta [Salmonella enterica subsp.
enterica serovar Montevideo str. 2009085258]
gi|323243077|gb|EGA27098.1| integration host factor subunit beta [Salmonella enterica subsp.
enterica serovar Montevideo str. 315731156]
gi|323249760|gb|EGA33662.1| integration host factor subunit beta [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2009159199]
gi|323252767|gb|EGA36605.1| integration host factor subunit beta [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008282]
gi|323254795|gb|EGA38596.1| integration host factor subunit beta [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008283]
gi|323260004|gb|EGA43632.1| integration host factor subunit beta [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008284]
gi|323267995|gb|EGA51474.1| integration host factor subunit beta [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008285]
gi|323269842|gb|EGA53291.1| integration host factor subunit beta [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008287]
gi|326622659|gb|EGE29004.1| integration host factor subunit beta [Salmonella enterica subsp.
enterica serovar Dublin str. 3246]
gi|326627233|gb|EGE33576.1| integration host factor subunit beta [Salmonella enterica subsp.
enterica serovar Gallinarum str. 9]
gi|332987873|gb|AEF06856.1| integration host factor subunit beta [Salmonella enterica subsp.
enterica serovar Typhimurium str. UK-1]
Length = 94
Score = 106 bits (266), Expect = 9e-22, Method: Composition-based stats.
Identities = 40/91 (43%), Positives = 52/91 (57%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI +A + + + VE V +LE M LA G R+EIRGFGSFS+ RA R
Sbjct: 1 MTKSELIERLATQQSHIPAKAVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + +E K VP F+ GK L++R N
Sbjct: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRAN 91
>gi|317128573|ref|YP_004094855.1| histone family protein DNA-binding protein [Bacillus
cellulosilyticus DSM 2522]
gi|315473521|gb|ADU30124.1| histone family protein DNA-binding protein [Bacillus
cellulosilyticus DSM 2522]
Length = 90
Score = 106 bits (266), Expect = 9e-22, Method: Composition-based stats.
Identities = 34/91 (37%), Positives = 55/91 (60%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI +A+K+ L+ +D V+ + + +T +L NG +V++ GFG+F VR+RAAR
Sbjct: 1 MNKTELINAVAEKS-DLSKKDATSAVDAVFDVITGSLQNGEKVQLIGFGNFEVRERAARK 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + I + VP F+ GK LK+ +
Sbjct: 60 GRNPQTGEEIEIPASNVPAFKPGKALKDAVK 90
>gi|254714182|ref|ZP_05175993.1| DNA-binding protein HRL18 [Brucella ceti M644/93/1]
gi|254717617|ref|ZP_05179428.1| DNA-binding protein HRL18 [Brucella ceti M13/05/1]
gi|261219453|ref|ZP_05933734.1| histone family protein DNA-binding protein [Brucella ceti
M13/05/1]
gi|261321949|ref|ZP_05961146.1| histone family protein DNA-binding protein [Brucella ceti
M644/93/1]
gi|260924542|gb|EEX91110.1| histone family protein DNA-binding protein [Brucella ceti
M13/05/1]
gi|261294639|gb|EEX98135.1| histone family protein DNA-binding protein [Brucella ceti
M644/93/1]
Length = 91
Score = 106 bits (266), Expect = 9e-22, Method: Composition-based stats.
Identities = 35/91 (38%), Positives = 49/91 (53%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ L+ +A+K L D V+ +L +T AL G V + GFG FSV RAA
Sbjct: 1 MNKNELVAAVAEK-GGLTKTDAGTAVDAVLASVTAALKAGEEVRLPGFGVFSVSHRAAST 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P K +++ + VP F AGK LK+ +N
Sbjct: 60 GRNPSTGKEVAIPARNVPKFSAGKGLKDAVN 90
>gi|187477853|ref|YP_785877.1| integration host factor subunit beta [Bordetella avium 197N]
gi|115422439|emb|CAJ48964.1| integration host factor beta-subunit [Bordetella avium 197N]
Length = 119
Score = 106 bits (266), Expect = 9e-22, Method: Composition-based stats.
Identities = 41/90 (45%), Positives = 62/90 (68%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
KS LI ++ + P+L +D + V +L+ MTQALA+G R+EIRGFGSFS+ +R+ R+
Sbjct: 2 TKSELIAALSARYPQLAARDTDLAVKTVLDAMTQALASGQRIEIRGFGSFSLSQRSPRVG 61
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + + + V K VP F+AGK L+ER++
Sbjct: 62 RNPKSGEQVLVPGKQVPHFKAGKELRERVD 91
>gi|190014801|ref|YP_001967565.1| VirN [Agrobacterium tumefaciens]
gi|71849604|gb|AAZ50552.1| VirN [Agrobacterium tumefaciens]
Length = 100
Score = 106 bits (266), Expect = 9e-22, Method: Composition-based stats.
Identities = 51/91 (56%), Positives = 64/91 (70%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
MIKS L+ +A +NP L+ +D E V+ +L+E+T AL G RVEIRGFG+F VR R AR
Sbjct: 1 MIKSELVDLLAARNPYLHRRDAENAVDSVLDEITGALERGERVEIRGFGTFVVRHRPARS 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R PL + VEEK VPFFRAGK +K+RLN
Sbjct: 61 GRNPLNGNAVLVEEKWVPFFRAGKEIKDRLN 91
>gi|307546664|ref|YP_003899143.1| DNA-binding protein HU-beta [Halomonas elongata DSM 2581]
gi|307218688|emb|CBV43958.1| K03530 DNA-binding protein HU-beta [Halomonas elongata DSM 2581]
Length = 91
Score = 106 bits (266), Expect = 1e-21, Method: Composition-based stats.
Identities = 28/91 (30%), Positives = 50/91 (54%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS L+ IA +L+ E+ + + + + L+ G ++ + GFG+F R+RAAR
Sbjct: 1 MNKSELVKQIAT-TAELSQAQAERCLTAFTDSVAKTLSQGDKLTLLGFGTFETRERAART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + +++ VP F+AG+ LK+ +
Sbjct: 60 GRNPQTGEEMTIPAAKVPAFKAGQGLKDAVK 90
>gi|56420750|ref|YP_148068.1| DNA-binding protein HU [Geobacillus kaustophilus HTA426]
gi|138895793|ref|YP_001126246.1| DNA binding protein HU [Geobacillus thermodenitrificans NG80-2]
gi|196248675|ref|ZP_03147375.1| histone family protein DNA-binding protein [Geobacillus sp.
G11MC16]
gi|261417947|ref|YP_003251629.1| histone family protein DNA-binding protein [Geobacillus sp.
Y412MC61]
gi|297529615|ref|YP_003670890.1| histone family protein DNA-binding protein [Geobacillus sp.
C56-T3]
gi|319767241|ref|YP_004132742.1| histone family protein DNA-binding protein [Geobacillus sp.
Y412MC52]
gi|61222554|sp|P0A3H0|DBH_BACST RecName: Full=DNA-binding protein HU; AltName: Full=DNA-binding
protein II; AltName: Full=HB
gi|61222555|sp|P0A3H1|DBH_BACCL RecName: Full=DNA-binding protein HU; AltName: Full=DNA-binding
protein II; AltName: Full=HB
gi|61222556|sp|P0A3H2|DBH_BACCA RecName: Full=DNA-binding protein HU; AltName: Full=DNA-binding
protein II; AltName: Full=HB
gi|1311345|pdb|1HUE|A Chain A, Histone-Like Protein
gi|1311346|pdb|1HUE|B Chain B, Histone-Like Protein
gi|4389195|pdb|1HUU|A Chain A, Dna-Binding Protein Hu From Bacillus Stearothermophilus
gi|4389196|pdb|1HUU|B Chain B, Dna-Binding Protein Hu From Bacillus Stearothermophilus
gi|4389197|pdb|1HUU|C Chain C, Dna-Binding Protein Hu From Bacillus Stearothermophilus
gi|143065|gb|AAA22532.1| hubst [Geobacillus stearothermophilus]
gi|143067|gb|AAA22533.1| hubcalx [Bacillus caldotenax]
gi|143069|gb|AAA22534.1| hubcald [Bacillus caldolyticus]
gi|1065992|dbj|BAA07273.1| DNA binding protein HU [Geobacillus stearothermophilus]
gi|56380592|dbj|BAD76500.1| DNA-binding protein HU (DNA-binding protein II) [Geobacillus
kaustophilus HTA426]
gi|134267306|gb|ABO67501.1| DNA binding protein HU [Geobacillus thermodenitrificans NG80-2]
gi|196211551|gb|EDY06310.1| histone family protein DNA-binding protein [Geobacillus sp.
G11MC16]
gi|261374404|gb|ACX77147.1| histone family protein DNA-binding protein [Geobacillus sp.
Y412MC61]
gi|297252867|gb|ADI26313.1| histone family protein DNA-binding protein [Geobacillus sp.
C56-T3]
gi|317112107|gb|ADU94599.1| histone family protein DNA-binding protein [Geobacillus sp.
Y412MC52]
Length = 90
Score = 106 bits (266), Expect = 1e-21, Method: Composition-based stats.
Identities = 33/91 (36%), Positives = 54/91 (59%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI +A+ L+ +D K V+ + + +T+AL G +V++ GFG+F VR+RAAR
Sbjct: 1 MNKTELINAVAE-TSGLSKKDATKAVDAVFDSITEALRKGDKVQLIGFGNFEVRERAARK 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + + + VP F+ GK LK+ +
Sbjct: 60 GRNPQTGEEMEIPASKVPAFKPGKALKDAVK 90
>gi|258621310|ref|ZP_05716344.1| integration host factor beta subunit [Vibrio mimicus VM573]
gi|258625366|ref|ZP_05720263.1| integration host factor beta subunit [Vibrio mimicus VM603]
gi|262166044|ref|ZP_06033781.1| integration host factor beta subunit [Vibrio mimicus VM223]
gi|262171092|ref|ZP_06038770.1| integration host factor beta subunit [Vibrio mimicus MB-451]
gi|258582357|gb|EEW07209.1| integration host factor beta subunit [Vibrio mimicus VM603]
gi|258586698|gb|EEW11413.1| integration host factor beta subunit [Vibrio mimicus VM573]
gi|261892168|gb|EEY38154.1| integration host factor beta subunit [Vibrio mimicus MB-451]
gi|262025760|gb|EEY44428.1| integration host factor beta subunit [Vibrio mimicus VM223]
Length = 92
Score = 106 bits (266), Expect = 1e-21, Method: Composition-based stats.
Identities = 38/91 (41%), Positives = 53/91 (58%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI + + L+ +++E V +LE M L G R+EIRGFGSFS+ R R+
Sbjct: 1 MTKSELIERLCAEQTHLSAKEIEDAVKNILEHMASTLEAGERIEIRGFGSFSLHYREPRM 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + +E K VP F+ GK L+ER+N
Sbjct: 61 GRNPKTGDKVELEGKYVPHFKPGKELRERVN 91
>gi|238784531|ref|ZP_04628539.1| Integration host factor subunit beta [Yersinia bercovieri ATCC
43970]
gi|238792398|ref|ZP_04636032.1| Integration host factor subunit beta [Yersinia intermedia ATCC
29909]
gi|238714594|gb|EEQ06598.1| Integration host factor subunit beta [Yersinia bercovieri ATCC
43970]
gi|238728324|gb|EEQ19844.1| Integration host factor subunit beta [Yersinia intermedia ATCC
29909]
Length = 94
Score = 106 bits (266), Expect = 1e-21, Method: Composition-based stats.
Identities = 40/91 (43%), Positives = 53/91 (58%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI +A + + + VE V +LE M LA G R+EIRGFGSFS+ RA R+
Sbjct: 1 MTKSELIERLAGQQSHVPAKAVEDAVKEMLEHMAGTLAEGERIEIRGFGSFSLHYRAPRV 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + +E K VP F+ GK L++R N
Sbjct: 61 GRNPKTGAKVELEGKYVPHFKPGKELRDRAN 91
>gi|296112837|ref|YP_003626775.1| DNA-binding protein HU-beta [Moraxella catarrhalis RH4]
gi|295920531|gb|ADG60882.1| DNA-binding protein HU-beta [Moraxella catarrhalis RH4]
gi|326561078|gb|EGE11443.1| DNA-binding protein HU-beta [Moraxella catarrhalis 7169]
gi|326561504|gb|EGE11848.1| DNA-binding protein HU-beta [Moraxella catarrhalis 46P47B1]
gi|326565372|gb|EGE15550.1| DNA-binding protein HU-beta [Moraxella catarrhalis 12P80B1]
gi|326566699|gb|EGE16838.1| DNA-binding protein HU-beta [Moraxella catarrhalis 103P14B1]
gi|326567537|gb|EGE17652.1| DNA-binding protein HU-beta [Moraxella catarrhalis BC1]
gi|326569385|gb|EGE19445.1| DNA-binding protein HU-beta [Moraxella catarrhalis BC8]
gi|326571416|gb|EGE21431.1| DNA-binding protein HU-beta [Moraxella catarrhalis BC7]
gi|326575302|gb|EGE25230.1| DNA-binding protein HU-beta [Moraxella catarrhalis CO72]
gi|326576613|gb|EGE26520.1| DNA-binding protein HU-beta [Moraxella catarrhalis 101P30B1]
gi|326577520|gb|EGE27400.1| DNA-binding protein HU-beta [Moraxella catarrhalis O35E]
Length = 90
Score = 106 bits (266), Expect = 1e-21, Method: Composition-based stats.
Identities = 38/91 (41%), Positives = 53/91 (58%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS L+ +IA ++ L + K VN E + AL G V + GFG+FSV++RAAR+
Sbjct: 1 MNKSELVDSIA-QSAGLTKEQAAKAVNAFTESVQGALQRGDDVVLVGFGTFSVKERAARM 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + I + VP F+AGK LKE +N
Sbjct: 60 GRNPKTGEAIQIAASKVPSFKAGKVLKESVN 90
>gi|15800773|ref|NP_286787.1| integration host factor subunit beta [Escherichia coli O157:H7
EDL933]
gi|15830249|ref|NP_309022.1| integration host factor subunit beta [Escherichia coli O157:H7
str. Sakai]
gi|16128879|ref|NP_415432.1| integration host factor (IHF), DNA-binding protein, beta subunit
[Escherichia coli str. K-12 substr. MG1655]
gi|24112321|ref|NP_706831.1| integration host factor subunit beta [Shigella flexneri 2a str.
301]
gi|26246937|ref|NP_752977.1| integration host factor subunit beta [Escherichia coli CFT073]
gi|30062447|ref|NP_836618.1| integration host factor subunit beta [Shigella flexneri 2a str.
2457T]
gi|74311469|ref|YP_309888.1| integration host factor subunit beta [Shigella sonnei Ss046]
gi|82544651|ref|YP_408598.1| integration host factor subunit beta [Shigella boydii Sb227]
gi|82777565|ref|YP_403914.1| integration host factor subunit beta [Shigella dysenteriae Sd197]
gi|89107762|ref|AP_001542.1| integration host factor (IHF), DNA-binding protein, beta subunit
[Escherichia coli str. K-12 substr. W3110]
gi|91210013|ref|YP_539999.1| integration host factor subunit beta [Escherichia coli UTI89]
gi|110641109|ref|YP_668839.1| integration host factor subunit beta [Escherichia coli 536]
gi|110804920|ref|YP_688440.1| integration host factor subunit beta [Shigella flexneri 5 str.
8401]
gi|157157201|ref|YP_001462130.1| integration host factor subunit beta [Escherichia coli E24377A]
gi|157160434|ref|YP_001457752.1| integration host factor subunit beta [Escherichia coli HS]
gi|168751175|ref|ZP_02776197.1| integration host factor, beta subunit [Escherichia coli O157:H7
str. EC4113]
gi|168757004|ref|ZP_02782011.1| integration host factor, beta subunit [Escherichia coli O157:H7
str. EC4401]
gi|168762953|ref|ZP_02787960.1| integration host factor, beta subunit [Escherichia coli O157:H7
str. EC4501]
gi|168769907|ref|ZP_02794914.1| integration host factor, beta subunit [Escherichia coli O157:H7
str. EC4486]
gi|168776237|ref|ZP_02801244.1| integration host factor, beta subunit [Escherichia coli O157:H7
str. EC4196]
gi|168784109|ref|ZP_02809116.1| integration host factor, beta subunit [Escherichia coli O157:H7
str. EC4076]
gi|168787341|ref|ZP_02812348.1| integration host factor, beta subunit [Escherichia coli O157:H7
str. EC869]
gi|168801405|ref|ZP_02826412.1| integration host factor, beta subunit [Escherichia coli O157:H7
str. EC508]
gi|170020686|ref|YP_001725640.1| integration host factor subunit beta [Escherichia coli ATCC 8739]
gi|170080570|ref|YP_001729890.1| integration host factor (IHF), DNA-binding protein, beta subunit
[Escherichia coli str. K-12 substr. DH10B]
gi|170683232|ref|YP_001744258.1| integration host factor subunit beta [Escherichia coli SMS-3-5]
gi|170769200|ref|ZP_02903653.1| integration host factor, beta subunit [Escherichia albertii
TW07627]
gi|187733349|ref|YP_001880893.1| integration host factor subunit beta [Shigella boydii CDC
3083-94]
gi|188493972|ref|ZP_03001242.1| integration host factor, beta subunit [Escherichia coli 53638]
gi|191166992|ref|ZP_03028815.1| integration host factor, beta subunit [Escherichia coli B7A]
gi|191172063|ref|ZP_03033607.1| integration host factor, beta subunit [Escherichia coli F11]
gi|193064687|ref|ZP_03045766.1| integration host factor, beta subunit [Escherichia coli E22]
gi|193070745|ref|ZP_03051680.1| integration host factor, beta subunit [Escherichia coli E110019]
gi|194428394|ref|ZP_03060935.1| integration host factor, beta subunit [Escherichia coli B171]
gi|194431402|ref|ZP_03063694.1| integration host factor, beta subunit [Shigella dysenteriae 1012]
gi|194438689|ref|ZP_03070776.1| integration host factor, beta subunit [Escherichia coli 101-1]
gi|195940069|ref|ZP_03085451.1| integration host factor subunit beta [Escherichia coli O157:H7
str. EC4024]
gi|208809443|ref|ZP_03251780.1| integration host factor, beta subunit [Escherichia coli O157:H7
str. EC4206]
gi|208814934|ref|ZP_03256113.1| integration host factor, beta subunit [Escherichia coli O157:H7
str. EC4045]
gi|208822709|ref|ZP_03263028.1| integration host factor, beta subunit [Escherichia coli O157:H7
str. EC4042]
gi|209396562|ref|YP_002269584.1| integration host factor, beta subunit [Escherichia coli O157:H7
str. EC4115]
gi|209918162|ref|YP_002292246.1| integration host factor subunit beta [Escherichia coli SE11]
gi|217325996|ref|ZP_03442080.1| integration host factor, beta subunit [Escherichia coli O157:H7
str. TW14588]
gi|218553499|ref|YP_002386412.1| integration host factor subunit beta [Escherichia coli IAI1]
gi|218557817|ref|YP_002390730.1| integration host factor subunit beta [Escherichia coli S88]
gi|218688752|ref|YP_002396964.1| integration host factor subunit beta [Escherichia coli ED1a]
gi|218694385|ref|YP_002402052.1| integration host factor subunit beta [Escherichia coli 55989]
gi|218700569|ref|YP_002408198.1| integration host factor subunit beta [Escherichia coli IAI39]
gi|218704339|ref|YP_002411858.1| integration host factor subunit beta [Escherichia coli UMN026]
gi|227884123|ref|ZP_04001928.1| integration host factor subunit beta [Escherichia coli 83972]
gi|237707100|ref|ZP_04537581.1| integration host factor subunit beta [Escherichia sp. 3_2_53FAA]
gi|238900170|ref|YP_002925966.1| integration host factor (IHF), DNA-binding protein, beta subunit
[Escherichia coli BW2952]
gi|253774059|ref|YP_003036890.1| integration host factor subunit beta [Escherichia coli
'BL21-Gold(DE3)pLysS AG']
gi|254161026|ref|YP_003044134.1| integration host factor subunit beta [Escherichia coli B str.
REL606]
gi|254792111|ref|YP_003076948.1| integration host factor subunit beta [Escherichia coli O157:H7
str. TW14359]
gi|256020960|ref|ZP_05434825.1| integration host factor subunit beta [Shigella sp. D9]
gi|256023387|ref|ZP_05437252.1| integration host factor subunit beta [Escherichia sp. 4_1_40B]
gi|260843162|ref|YP_003220940.1| integration host factor, beta subunit [Escherichia coli O103:H2
str. 12009]
gi|260854203|ref|YP_003228094.1| integration host factor, beta subunit [Escherichia coli O26:H11
str. 11368]
gi|260867084|ref|YP_003233486.1| integration host factor, beta subunit [Escherichia coli O111:H-
str. 11128]
gi|261227415|ref|ZP_05941696.1| integration host factor (IHF), DNA-binding protein, beta subunit
[Escherichia coli O157:H7 str. FRIK2000]
gi|261256162|ref|ZP_05948695.1| integration host factor, beta subunit [Escherichia coli O157:H7
str. FRIK966]
gi|291281913|ref|YP_003498731.1| Integration host factor subunit beta [Escherichia coli O55:H7
str. CB9615]
gi|293404217|ref|ZP_06648211.1| ihfB [Escherichia coli FVEC1412]
gi|293409289|ref|ZP_06652865.1| integration host factor [Escherichia coli B354]
gi|293414192|ref|ZP_06656841.1| integration host factor [Escherichia coli B185]
gi|293433209|ref|ZP_06661637.1| integration host factor [Escherichia coli B088]
gi|297520621|ref|ZP_06939007.1| integration host factor subunit beta [Escherichia coli OP50]
gi|298379997|ref|ZP_06989602.1| ihfB [Escherichia coli FVEC1302]
gi|300816984|ref|ZP_07097203.1| integration host factor, beta subunit [Escherichia coli MS 107-1]
gi|300823652|ref|ZP_07103779.1| integration host factor, beta subunit [Escherichia coli MS 119-7]
gi|300901658|ref|ZP_07119718.1| integration host factor, beta subunit [Escherichia coli MS 198-1]
gi|300902929|ref|ZP_07120874.1| integration host factor, beta subunit [Escherichia coli MS 84-1]
gi|300921051|ref|ZP_07137437.1| integration host factor, beta subunit [Escherichia coli MS 115-1]
gi|300925410|ref|ZP_07141295.1| integration host factor, beta subunit [Escherichia coli MS 182-1]
gi|300929607|ref|ZP_07145069.1| integration host factor, beta subunit [Escherichia coli MS 187-1]
gi|300937744|ref|ZP_07152545.1| integration host factor, beta subunit [Escherichia coli MS 21-1]
gi|300949726|ref|ZP_07163704.1| integration host factor, beta subunit [Escherichia coli MS 116-1]
gi|300955440|ref|ZP_07167814.1| integration host factor, beta subunit [Escherichia coli MS 175-1]
gi|300978463|ref|ZP_07174278.1| integration host factor, beta subunit [Escherichia coli MS 45-1]
gi|300983138|ref|ZP_07176452.1| integration host factor, beta subunit [Escherichia coli MS 200-1]
gi|301022406|ref|ZP_07186289.1| integration host factor, beta subunit [Escherichia coli MS 196-1]
gi|301023015|ref|ZP_07186826.1| integration host factor, beta subunit [Escherichia coli MS 69-1]
gi|301047829|ref|ZP_07194880.1| integration host factor, beta subunit [Escherichia coli MS 185-1]
gi|301302480|ref|ZP_07208611.1| integration host factor, beta subunit [Escherichia coli MS 124-1]
gi|301326623|ref|ZP_07219956.1| integration host factor, beta subunit [Escherichia coli MS 78-1]
gi|301643432|ref|ZP_07243480.1| integration host factor, beta subunit [Escherichia coli MS 146-1]
gi|306812635|ref|ZP_07446828.1| integration host factor subunit beta [Escherichia coli NC101]
gi|307137541|ref|ZP_07496897.1| integration host factor subunit beta [Escherichia coli H736]
gi|307311701|ref|ZP_07591341.1| integration host factor, beta subunit [Escherichia coli W]
gi|309787783|ref|ZP_07682393.1| integration host factor, beta subunit [Shigella dysenteriae 1617]
gi|309795104|ref|ZP_07689524.1| integration host factor, beta subunit [Escherichia coli MS 145-7]
gi|312969022|ref|ZP_07783229.1| integration host factor, beta subunit [Escherichia coli 2362-75]
gi|312971040|ref|ZP_07785219.1| integration host factor, beta subunit [Escherichia coli 1827-70]
gi|331641438|ref|ZP_08342573.1| integration host factor, beta subunit [Escherichia coli H736]
gi|331646177|ref|ZP_08347280.1| integration host factor, beta subunit [Escherichia coli M605]
gi|331651932|ref|ZP_08352951.1| integration host factor, beta subunit [Escherichia coli M718]
gi|331656983|ref|ZP_08357945.1| integration host factor, beta subunit [Escherichia coli TA206]
gi|331662325|ref|ZP_08363248.1| integration host factor, beta subunit [Escherichia coli TA143]
gi|331667289|ref|ZP_08368154.1| integration host factor, beta subunit [Escherichia coli TA271]
gi|331676700|ref|ZP_08377396.1| integration host factor, beta subunit [Escherichia coli H591]
gi|331682419|ref|ZP_08383038.1| integration host factor, beta subunit [Escherichia coli H299]
gi|332282183|ref|ZP_08394596.1| integration host factor (IHF) DNA-binding protein beta subunit
[Shigella sp. D9]
gi|67466112|sp|P0A6Y1|IHFB_ECOLI RecName: Full=Integration host factor subunit beta;
Short=IHF-beta
gi|67466113|sp|P0A6Y2|IHFB_ECOL6 RecName: Full=Integration host factor subunit beta;
Short=IHF-beta
gi|67466114|sp|P0A6Y3|IHFB_ECO57 RecName: Full=Integration host factor subunit beta;
Short=IHF-beta
gi|67466115|sp|P0A6Y4|IHFB_SHIFL RecName: Full=Integration host factor subunit beta;
Short=IHF-beta
gi|122990837|sp|Q1RDU6|IHFB_ECOUT RecName: Full=Integration host factor subunit beta;
Short=IHF-beta
gi|123342125|sp|Q0SX03|IHFB_SHIF8 RecName: Full=Integration host factor subunit beta;
Short=IHF-beta
gi|123344183|sp|Q0TJE1|IHFB_ECOL5 RecName: Full=Integration host factor subunit beta;
Short=IHF-beta
gi|123741971|sp|Q31YT8|IHFB_SHIBS RecName: Full=Integration host factor subunit beta;
Short=IHF-beta
gi|123742113|sp|Q32E32|IHFB_SHIDS RecName: Full=Integration host factor subunit beta;
Short=IHF-beta
gi|123773538|sp|Q3Z3K9|IHFB_SHISS RecName: Full=Integration host factor subunit beta;
Short=IHF-beta
gi|166918545|sp|A7ZK01|IHFB_ECO24 RecName: Full=Integration host factor subunit beta;
Short=IHF-beta
gi|166918546|sp|A7ZYL5|IHFB_ECOHS RecName: Full=Integration host factor subunit beta;
Short=IHF-beta
gi|189045036|sp|B1IW19|IHFB_ECOLC RecName: Full=Integration host factor subunit beta;
Short=IHF-beta
gi|226709786|sp|B7MHM1|IHFB_ECO45 RecName: Full=Integration host factor subunit beta;
Short=IHF-beta
gi|226709787|sp|B5YT46|IHFB_ECO5E RecName: Full=Integration host factor subunit beta;
Short=IHF-beta
gi|226709788|sp|B7NM62|IHFB_ECO7I RecName: Full=Integration host factor subunit beta;
Short=IHF-beta
gi|226709789|sp|B7M841|IHFB_ECO8A RecName: Full=Integration host factor subunit beta;
Short=IHF-beta
gi|226709790|sp|B1X852|IHFB_ECODH RecName: Full=Integration host factor subunit beta;
Short=IHF-beta
gi|226709791|sp|B7NAR1|IHFB_ECOLU RecName: Full=Integration host factor subunit beta;
Short=IHF-beta
gi|226709792|sp|B6I8Y4|IHFB_ECOSE RecName: Full=Integration host factor subunit beta;
Short=IHF-beta
gi|226709793|sp|B1LJV1|IHFB_ECOSM RecName: Full=Integration host factor subunit beta;
Short=IHF-beta
gi|226709814|sp|B2TUG9|IHFB_SHIB3 RecName: Full=Integration host factor subunit beta;
Short=IHF-beta
gi|254803533|sp|B7LDA4|IHFB_ECO55 RecName: Full=Integration host factor subunit beta;
Short=IHF-beta
gi|254803534|sp|B7MS27|IHFB_ECO81 RecName: Full=Integration host factor subunit beta;
Short=IHF-beta
gi|259492034|sp|C4ZQ38|IHFB_ECOBW RecName: Full=Integration host factor subunit beta;
Short=IHF-beta
gi|1942276|pdb|1IHF|B Chain B, Integration Host FactorDNA COMPLEX
gi|34811470|pdb|1OWG|B Chain B, Crystal Structure Of Wt Ihf Complexed With An Altered H'
Site (T44a)
gi|119389942|pdb|2HT0|B Chain B, Ihf Bound To Doubly Nicked Dna
gi|12514078|gb|AAG55397.1|AE005280_8 integration host factor (IHF), beta subunit; site-specific
recombination [Escherichia coli O157:H7 str. EDL933]
gi|26107337|gb|AAN79520.1|AE016758_124 Integration host factor beta-subunit [Escherichia coli CFT073]
gi|414749|emb|CAA28557.1| IHF (AA 1-93) [Escherichia coli K-12]
gi|1651440|dbj|BAA35656.1| integration host factor (IHF), DNA-binding protein, beta subunit
[Escherichia coli str. K12 substr. W3110]
gi|1787141|gb|AAC73998.1| integration host factor (IHF), DNA-binding protein, beta subunit
[Escherichia coli str. K-12 substr. MG1655]
gi|13360454|dbj|BAB34418.1| integration host factor (IHF) beta subunit [Escherichia coli
O157:H7 str. Sakai]
gi|24051181|gb|AAN42538.1| integration host factor (IHF), beta subunit [Shigella flexneri 2a
str. 301]
gi|30040693|gb|AAP16424.1| integration host factor (IHF), beta subunit [Shigella flexneri 2a
str. 2457T]
gi|68304094|gb|AAY89705.1| IhfB [Escherichia coli LW1655F+]
gi|73854946|gb|AAZ87653.1| integration host factor (IHF), beta subunit [Shigella sonnei
Ss046]
gi|81241713|gb|ABB62423.1| integration host factor, beta subunit [Shigella dysenteriae
Sd197]
gi|81246062|gb|ABB66770.1| integration host factor (IHF), beta subunit [Shigella boydii
Sb227]
gi|91071587|gb|ABE06468.1| beta subunit of IHF transcriptional dual regulator [Escherichia
coli UTI89]
gi|110342701|gb|ABG68938.1| integration host factor beta-subunit [Escherichia coli 536]
gi|110614468|gb|ABF03135.1| integration host factor beta subunit [Shigella flexneri 5 str.
8401]
gi|157066114|gb|ABV05369.1| integration host factor, beta subunit [Escherichia coli HS]
gi|157079231|gb|ABV18939.1| integration host factor, beta subunit [Escherichia coli E24377A]
gi|169755614|gb|ACA78313.1| integration host factor, beta subunit [Escherichia coli ATCC
8739]
gi|169888405|gb|ACB02112.1| integration host factor (IHF), DNA-binding protein, beta subunit
[Escherichia coli str. K-12 substr. DH10B]
gi|170121852|gb|EDS90783.1| integration host factor, beta subunit [Escherichia albertii
TW07627]
gi|170520950|gb|ACB19128.1| integration host factor, beta subunit [Escherichia coli SMS-3-5]
gi|187430341|gb|ACD09615.1| integration host factor, beta subunit [Shigella boydii CDC
3083-94]
gi|187768389|gb|EDU32233.1| integration host factor, beta subunit [Escherichia coli O157:H7
str. EC4196]
gi|188014737|gb|EDU52859.1| integration host factor, beta subunit [Escherichia coli O157:H7
str. EC4113]
gi|188489171|gb|EDU64274.1| integration host factor, beta subunit [Escherichia coli 53638]
gi|188998657|gb|EDU67643.1| integration host factor, beta subunit [Escherichia coli O157:H7
str. EC4076]
gi|189355928|gb|EDU74347.1| integration host factor, beta subunit [Escherichia coli O157:H7
str. EC4401]
gi|189361153|gb|EDU79572.1| integration host factor, beta subunit [Escherichia coli O157:H7
str. EC4486]
gi|189366830|gb|EDU85246.1| integration host factor, beta subunit [Escherichia coli O157:H7
str. EC4501]
gi|189372671|gb|EDU91087.1| integration host factor, beta subunit [Escherichia coli O157:H7
str. EC869]
gi|189376433|gb|EDU94849.1| integration host factor, beta subunit [Escherichia coli O157:H7
str. EC508]
gi|190902986|gb|EDV62712.1| integration host factor, beta subunit [Escherichia coli B7A]
gi|190907590|gb|EDV67185.1| integration host factor, beta subunit [Escherichia coli F11]
gi|192927744|gb|EDV82359.1| integration host factor, beta subunit [Escherichia coli E22]
gi|192955938|gb|EDV86406.1| integration host factor, beta subunit [Escherichia coli E110019]
gi|194413609|gb|EDX29890.1| integration host factor, beta subunit [Escherichia coli B171]
gi|194420227|gb|EDX36304.1| integration host factor, beta subunit [Shigella dysenteriae 1012]
gi|194422321|gb|EDX38321.1| integration host factor, beta subunit [Escherichia coli 101-1]
gi|208729244|gb|EDZ78845.1| integration host factor, beta subunit [Escherichia coli O157:H7
str. EC4206]
gi|208731582|gb|EDZ80270.1| integration host factor, beta subunit [Escherichia coli O157:H7
str. EC4045]
gi|208738194|gb|EDZ85877.1| integration host factor, beta subunit [Escherichia coli O157:H7
str. EC4042]
gi|209157962|gb|ACI35395.1| integration host factor, beta subunit [Escherichia coli O157:H7
str. EC4115]
gi|209774858|gb|ACI85741.1| integration host factor (IHF) beta subunit [Escherichia coli]
gi|209774860|gb|ACI85742.1| integration host factor (IHF) beta subunit [Escherichia coli]
gi|209774862|gb|ACI85743.1| integration host factor (IHF) beta subunit [Escherichia coli]
gi|209774864|gb|ACI85744.1| integration host factor (IHF) beta subunit [Escherichia coli]
gi|209774866|gb|ACI85745.1| integration host factor (IHF) beta subunit [Escherichia coli]
gi|209911421|dbj|BAG76495.1| integration host factor beta subunit [Escherichia coli SE11]
gi|217322217|gb|EEC30641.1| integration host factor, beta subunit [Escherichia coli O157:H7
str. TW14588]
gi|218351117|emb|CAU96821.1| integration host factor (IHF), DNA-binding protein, beta subunit
[Escherichia coli 55989]
gi|218360267|emb|CAQ97817.1| integration host factor (IHF), DNA-binding protein, beta subunit
[Escherichia coli IAI1]
gi|218364586|emb|CAR02272.1| integration host factor (IHF), DNA-binding protein, beta subunit
[Escherichia coli S88]
gi|218370555|emb|CAR18362.1| integration host factor (IHF), DNA-binding protein, beta subunit
[Escherichia coli IAI39]
gi|218426316|emb|CAR07141.1| integration host factor (IHF), DNA-binding protein, beta subunit
[Escherichia coli ED1a]
gi|218431436|emb|CAR12314.1| integration host factor (IHF), DNA-binding protein, beta subunit
[Escherichia coli UMN026]
gi|222032643|emb|CAP75382.1| Integration host factor subunit beta [Escherichia coli LF82]
gi|226898310|gb|EEH84569.1| integration host factor subunit beta [Escherichia sp. 3_2_53FAA]
gi|227838875|gb|EEJ49341.1| integration host factor subunit beta [Escherichia coli 83972]
gi|238861522|gb|ACR63520.1| integration host factor (IHF), DNA-binding protein, beta subunit
[Escherichia coli BW2952]
gi|242376727|emb|CAQ31440.1| integration host factor (IHF), beta subunit, subunit of IHF
transcriptional dual regulator [Escherichia coli
BL21(DE3)]
gi|253325103|gb|ACT29705.1| integration host factor, beta subunit [Escherichia coli
'BL21-Gold(DE3)pLysS AG']
gi|253972927|gb|ACT38598.1| integration host factor subunit beta [Escherichia coli B str.
REL606]
gi|253977141|gb|ACT42811.1| integration host factor subunit beta [Escherichia coli BL21(DE3)]
gi|254591511|gb|ACT70872.1| integration host factor (IHF), DNA-binding protein, beta subunit
[Escherichia coli O157:H7 str. TW14359]
gi|257752852|dbj|BAI24354.1| integration host factor, beta subunit [Escherichia coli O26:H11
str. 11368]
gi|257758309|dbj|BAI29806.1| integration host factor, beta subunit [Escherichia coli O103:H2
str. 12009]
gi|257763440|dbj|BAI34935.1| integration host factor, beta subunit [Escherichia coli O111:H-
str. 11128]
gi|260449942|gb|ACX40364.1| integration host factor, beta subunit [Escherichia coli DH1]
gi|281178043|dbj|BAI54373.1| integration host factor beta subunit [Escherichia coli SE15]
gi|281600272|gb|ADA73256.1| Integration host factor subunit beta [Shigella flexneri 2002017]
gi|284920763|emb|CBG33826.1| integration host factor beta-subunit (IHF-beta) [Escherichia coli
042]
gi|290761786|gb|ADD55747.1| Integration host factor subunit beta [Escherichia coli O55:H7
str. CB9615]
gi|291324028|gb|EFE63450.1| integration host factor [Escherichia coli B088]
gi|291428803|gb|EFF01828.1| ihfB [Escherichia coli FVEC1412]
gi|291434250|gb|EFF07223.1| integration host factor [Escherichia coli B185]
gi|291469757|gb|EFF12241.1| integration host factor [Escherichia coli B354]
gi|294490499|gb|ADE89255.1| integration host factor, beta subunit [Escherichia coli IHE3034]
gi|298279695|gb|EFI21203.1| ihfB [Escherichia coli FVEC1302]
gi|299881247|gb|EFI89458.1| integration host factor, beta subunit [Escherichia coli MS 196-1]
gi|300300288|gb|EFJ56673.1| integration host factor, beta subunit [Escherichia coli MS 185-1]
gi|300306972|gb|EFJ61492.1| integration host factor, beta subunit [Escherichia coli MS 200-1]
gi|300317663|gb|EFJ67447.1| integration host factor, beta subunit [Escherichia coli MS 175-1]
gi|300354951|gb|EFJ70821.1| integration host factor, beta subunit [Escherichia coli MS 198-1]
gi|300397276|gb|EFJ80814.1| integration host factor, beta subunit [Escherichia coli MS 69-1]
gi|300405071|gb|EFJ88609.1| integration host factor, beta subunit [Escherichia coli MS 84-1]
gi|300409640|gb|EFJ93178.1| integration host factor, beta subunit [Escherichia coli MS 45-1]
gi|300411989|gb|EFJ95299.1| integration host factor, beta subunit [Escherichia coli MS 115-1]
gi|300418480|gb|EFK01791.1| integration host factor, beta subunit [Escherichia coli MS 182-1]
gi|300450874|gb|EFK14494.1| integration host factor, beta subunit [Escherichia coli MS 116-1]
gi|300457251|gb|EFK20744.1| integration host factor, beta subunit [Escherichia coli MS 21-1]
gi|300462444|gb|EFK25937.1| integration host factor, beta subunit [Escherichia coli MS 187-1]
gi|300523852|gb|EFK44921.1| integration host factor, beta subunit [Escherichia coli MS 119-7]
gi|300530336|gb|EFK51398.1| integration host factor, beta subunit [Escherichia coli MS 107-1]
gi|300842319|gb|EFK70079.1| integration host factor, beta subunit [Escherichia coli MS 124-1]
gi|300846706|gb|EFK74466.1| integration host factor, beta subunit [Escherichia coli MS 78-1]
gi|301078146|gb|EFK92952.1| integration host factor, beta subunit [Escherichia coli MS 146-1]
gi|305853398|gb|EFM53837.1| integration host factor subunit beta [Escherichia coli NC101]
gi|306908256|gb|EFN38755.1| integration host factor, beta subunit [Escherichia coli W]
gi|307552751|gb|ADN45526.1| integration host factor, beta subunit [Escherichia coli ABU
83972]
gi|307627661|gb|ADN71965.1| integration host factor subunit beta [Escherichia coli UM146]
gi|308121408|gb|EFO58670.1| integration host factor, beta subunit [Escherichia coli MS 145-7]
gi|308924182|gb|EFP69679.1| integration host factor, beta subunit [Shigella dysenteriae 1617]
gi|309701188|emb|CBJ00488.1| integration host factor beta-subunit (IHF-beta) [Escherichia coli
ETEC H10407]
gi|310336801|gb|EFQ01968.1| integration host factor, beta subunit [Escherichia coli 1827-70]
gi|312286424|gb|EFR14337.1| integration host factor, beta subunit [Escherichia coli 2362-75]
gi|312945432|gb|ADR26259.1| integration host factor subunit beta [Escherichia coli O83:H1
str. NRG 857C]
gi|313650849|gb|EFS15250.1| integration host factor, beta subunit [Shigella flexneri 2a str.
2457T]
gi|315060197|gb|ADT74524.1| integration host factor (IHF), DNA-binding protein, beta subunit
[Escherichia coli W]
gi|315135560|dbj|BAJ42719.1| integration host factor subunit beta [Escherichia coli DH1]
gi|315257953|gb|EFU37921.1| integration host factor, beta subunit [Escherichia coli MS 85-1]
gi|315287525|gb|EFU46936.1| integration host factor, beta subunit [Escherichia coli MS 110-3]
gi|315291230|gb|EFU50590.1| integration host factor, beta subunit [Escherichia coli MS 153-1]
gi|315296192|gb|EFU55500.1| integration host factor, beta subunit [Escherichia coli MS 16-3]
gi|315619106|gb|EFU99686.1| integration host factor, beta subunit [Escherichia coli 3431]
gi|320173253|gb|EFW48462.1| Integration host factor beta subunit [Shigella dysenteriae CDC
74-1112]
gi|320182020|gb|EFW56925.1| Integration host factor beta subunit [Shigella boydii ATCC 9905]
gi|320184256|gb|EFW59069.1| Integration host factor beta subunit [Shigella flexneri CDC
796-83]
gi|320192602|gb|EFW67243.1| Integration host factor beta subunit [Escherichia coli O157:H7
str. EC1212]
gi|320196594|gb|EFW71217.1| Integration host factor beta subunit [Escherichia coli WV_060327]
gi|320202308|gb|EFW76879.1| Integration host factor beta subunit [Escherichia coli EC4100B]
gi|320637780|gb|EFX07572.1| integration host factor subunit beta [Escherichia coli O157:H7
str. G5101]
gi|320642905|gb|EFX12106.1| integration host factor subunit beta [Escherichia coli O157:H-
str. 493-89]
gi|320648362|gb|EFX17017.1| integration host factor subunit beta [Escherichia coli O157:H-
str. H 2687]
gi|320653678|gb|EFX21752.1| integration host factor subunit beta [Escherichia coli O55:H7
str. 3256-97 TW 07815]
gi|320659823|gb|EFX27379.1| integration host factor subunit beta [Escherichia coli O55:H7
str. USDA 5905]
gi|320664292|gb|EFX31443.1| integration host factor subunit beta [Escherichia coli O157:H7
str. LSU-61]
gi|323157201|gb|EFZ43324.1| integration host factor, beta subunit [Escherichia coli EPECa14]
gi|323159538|gb|EFZ45518.1| integration host factor, beta subunit [Escherichia coli E128010]
gi|323165379|gb|EFZ51166.1| integration host factor, beta subunit [Shigella sonnei 53G]
gi|323174987|gb|EFZ60602.1| integration host factor, beta subunit [Escherichia coli LT-68]
gi|323175465|gb|EFZ61060.1| integration host factor, beta subunit [Escherichia coli 1180]
gi|323185382|gb|EFZ70746.1| integration host factor, beta subunit [Escherichia coli 1357]
gi|323190732|gb|EFZ76001.1| integration host factor, beta subunit [Escherichia coli RN587/1]
gi|323379243|gb|ADX51511.1| integration host factor, beta subunit [Escherichia coli KO11]
gi|323938018|gb|EGB34280.1| integration host protein [Escherichia coli E1520]
gi|323942828|gb|EGB38993.1| integration host protein [Escherichia coli E482]
gi|323947299|gb|EGB43307.1| integration host protein [Escherichia coli H120]
gi|323953381|gb|EGB49247.1| integration host protein [Escherichia coli H252]
gi|323958217|gb|EGB53926.1| integration host protein [Escherichia coli H263]
gi|323962904|gb|EGB58478.1| integration host protein [Escherichia coli H489]
gi|323967159|gb|EGB62583.1| integration host protein [Escherichia coli M863]
gi|323973213|gb|EGB68405.1| integration host protein [Escherichia coli TA007]
gi|323976701|gb|EGB71789.1| integration host protein [Escherichia coli TW10509]
gi|324009836|gb|EGB79055.1| integration host factor, beta subunit [Escherichia coli MS 57-2]
gi|324012972|gb|EGB82191.1| integration host factor, beta subunit [Escherichia coli MS 60-1]
gi|324019079|gb|EGB88298.1| integration host factor, beta subunit [Escherichia coli MS 117-3]
gi|324117223|gb|EGC11131.1| integration host protein [Escherichia coli E1167]
gi|326338193|gb|EGD62022.1| Integration host factor beta subunit [Escherichia coli O157:H7
str. 1125]
gi|326346170|gb|EGD69908.1| Integration host factor beta subunit [Escherichia coli O157:H7
str. 1044]
gi|327253702|gb|EGE65331.1| integration host factor, beta subunit [Escherichia coli STEC_7v]
gi|330910692|gb|EGH39202.1| integration host factor beta subunit [Escherichia coli AA86]
gi|331038236|gb|EGI10456.1| integration host factor, beta subunit [Escherichia coli H736]
gi|331044929|gb|EGI17056.1| integration host factor, beta subunit [Escherichia coli M605]
gi|331050210|gb|EGI22268.1| integration host factor, beta subunit [Escherichia coli M718]
gi|331055231|gb|EGI27240.1| integration host factor, beta subunit [Escherichia coli TA206]
gi|331060747|gb|EGI32711.1| integration host factor, beta subunit [Escherichia coli TA143]
gi|331065645|gb|EGI37538.1| integration host factor, beta subunit [Escherichia coli TA271]
gi|331075389|gb|EGI46687.1| integration host factor, beta subunit [Escherichia coli H591]
gi|331080050|gb|EGI51229.1| integration host factor, beta subunit [Escherichia coli H299]
gi|332093267|gb|EGI98327.1| integration host factor, beta subunit [Shigella boydii 5216-82]
gi|332104535|gb|EGJ07881.1| integration host factor (IHF) DNA-binding protein beta subunit
[Shigella sp. D9]
gi|332760079|gb|EGJ90377.1| integration host factor, beta subunit [Shigella flexneri 2747-71]
gi|332762681|gb|EGJ92944.1| integration host factor, beta subunit [Shigella flexneri K-671]
gi|333006353|gb|EGK25861.1| integration host factor, beta subunit [Shigella flexneri VA-6]
gi|333006934|gb|EGK26429.1| integration host factor, beta subunit [Shigella flexneri K-218]
gi|333008890|gb|EGK28350.1| integration host factor, beta subunit [Shigella flexneri K-272]
gi|333020034|gb|EGK39305.1| integration host factor, beta subunit [Shigella flexneri K-304]
gi|333020200|gb|EGK39470.1| integration host factor, beta subunit [Shigella flexneri K-227]
Length = 94
Score = 106 bits (265), Expect = 1e-21, Method: Composition-based stats.
Identities = 40/91 (43%), Positives = 52/91 (57%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI +A + + + VE V +LE M LA G R+EIRGFGSFS+ RA R
Sbjct: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + +E K VP F+ GK L++R N
Sbjct: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRAN 91
>gi|320355221|ref|YP_004196560.1| histone family protein DNA-binding protein [Desulfobulbus
propionicus DSM 2032]
gi|320123723|gb|ADW19269.1| histone family protein DNA-binding protein [Desulfobulbus
propionicus DSM 2032]
Length = 93
Score = 106 bits (265), Expect = 1e-21, Method: Composition-based stats.
Identities = 39/93 (41%), Positives = 56/93 (60%), Gaps = 1/93 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI +A++ L +D + IV+ ++ M ALA G VE+RGFGSF VR+
Sbjct: 1 MTKSDLIQALAEQM-NLPVKDAKSIVDTIIGTMVDALAEGRGVELRGFGSFQVREYEGYT 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSP 93
R P + I V K +PFF+ GK+L++R+NS
Sbjct: 60 GRNPKTGEQIKVAPKKLPFFKVGKDLRDRINSE 92
>gi|293396770|ref|ZP_06641046.1| integration host factor subunit beta [Serratia odorifera DSM
4582]
gi|291421034|gb|EFE94287.1| integration host factor subunit beta [Serratia odorifera DSM
4582]
Length = 94
Score = 106 bits (265), Expect = 1e-21, Method: Composition-based stats.
Identities = 39/91 (42%), Positives = 54/91 (59%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI +A + + + VE V +LE M LA+G R+EIRGFGSFS+ RA R+
Sbjct: 1 MTKSELIERLAGQQSHIPAKAVEDAVKEMLEHMAATLADGERIEIRGFGSFSLHYRAPRV 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + ++ K VP F+ GK L++R N
Sbjct: 61 GRNPKTGDKVDLDGKYVPHFKPGKELRDRAN 91
>gi|254361238|ref|ZP_04977381.1| integration host factor beta subunit [Mannheimia haemolytica
PHL213]
gi|261492539|ref|ZP_05989092.1| integration host factor, beta subunit [Mannheimia haemolytica
serotype A2 str. BOVINE]
gi|261495208|ref|ZP_05991670.1| integration host factor, beta subunit [Mannheimia haemolytica
serotype A2 str. OVINE]
gi|3334237|sp|P95519|IHFB_PASHA RecName: Full=Integration host factor subunit beta;
Short=IHF-beta
gi|1842239|gb|AAC44846.1| integration host factor Beta subunit [Mannheimia haemolytica]
gi|153092734|gb|EDN73777.1| integration host factor beta subunit [Mannheimia haemolytica
PHL213]
gi|261309133|gb|EEY10374.1| integration host factor, beta subunit [Mannheimia haemolytica
serotype A2 str. OVINE]
gi|261311698|gb|EEY12848.1| integration host factor, beta subunit [Mannheimia haemolytica
serotype A2 str. BOVINE]
Length = 93
Score = 106 bits (265), Expect = 1e-21, Method: Composition-based stats.
Identities = 44/91 (48%), Positives = 59/91 (64%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI ++A KNP L + VE V LLE++T L G R+E+RGFGSFS+ R RL
Sbjct: 1 MTKSELIESLASKNPSLPIKMVEHCVKELLEQLTATLEEGERIEVRGFGSFSLHYRQPRL 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + + + K VP F+AGK+LKER++
Sbjct: 61 GRNPKTGESVLLGAKYVPHFKAGKDLKERVD 91
>gi|239827506|ref|YP_002950130.1| histone family protein DNA-binding protein [Geobacillus sp.
WCH70]
gi|239807799|gb|ACS24864.1| histone family protein DNA-binding protein [Geobacillus sp.
WCH70]
Length = 90
Score = 106 bits (265), Expect = 1e-21, Method: Composition-based stats.
Identities = 34/91 (37%), Positives = 54/91 (59%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI +A+ L+ +D K V+ + E +T+AL G +V++ GFG+F VR+RAAR
Sbjct: 1 MNKTDLINAVAE-TSGLSKKDATKAVDAVFESITEALRKGDKVQLIGFGNFEVRERAARK 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + + + VP F+ GK LK+ +
Sbjct: 60 GRNPQTGEEMEIPASKVPAFKPGKALKDAVK 90
>gi|325578218|ref|ZP_08148353.1| integration host factor beta subunit [Haemophilus parainfluenzae
ATCC 33392]
gi|301156124|emb|CBW15595.1| integration host factor (IHF), DNA-binding protein, beta subunit
[Haemophilus parainfluenzae T3T1]
gi|325159954|gb|EGC72083.1| integration host factor beta subunit [Haemophilus parainfluenzae
ATCC 33392]
Length = 94
Score = 106 bits (265), Expect = 1e-21, Method: Composition-based stats.
Identities = 41/91 (45%), Positives = 60/91 (65%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI ++ K+P L+ ++VE IV +LE + Q+L G R+E+RGFGSFS+ R R+
Sbjct: 1 MTKSELIENLSTKHPTLSAKEVEGIVKDILELIAQSLEEGNRIEVRGFGSFSLHHRQPRV 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + ++ K VP F+AGK LK+R+N
Sbjct: 61 GRNPKTGDSVKLDAKSVPHFKAGKELKDRVN 91
>gi|317047559|ref|YP_004115207.1| integration host factor subunit beta [Pantoea sp. At-9b]
gi|316949176|gb|ADU68651.1| integration host factor, beta subunit [Pantoea sp. At-9b]
Length = 94
Score = 106 bits (265), Expect = 1e-21, Method: Composition-based stats.
Identities = 40/91 (43%), Positives = 52/91 (57%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI +A + + + VE V +LE M LA G R+EIRGFGSFS+ RA R
Sbjct: 1 MTKSELIERLAGQQTHIPAKVVEDAVKEMLEHMATTLAQGERIEIRGFGSFSLHYRAPRT 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + +E K VP F+ GK L++R N
Sbjct: 61 GRNPKTGDKVDLEGKYVPHFKPGKELRDRAN 91
>gi|145298755|ref|YP_001141596.1| integration host factor subunit beta [Aeromonas salmonicida
subsp. salmonicida A449]
gi|330830009|ref|YP_004392961.1| integration host factor subunit beta [Aeromonas veronii B565]
gi|166918538|sp|A4SLS6|IHFB_AERS4 RecName: Full=Integration host factor subunit beta;
Short=IHF-beta
gi|142851527|gb|ABO89848.1| integration host factor beta-subunit [Aeromonas salmonicida
subsp. salmonicida A449]
gi|328805145|gb|AEB50344.1| Integration host factor subunit beta [Aeromonas veronii B565]
Length = 94
Score = 106 bits (265), Expect = 1e-21, Method: Composition-based stats.
Identities = 40/91 (43%), Positives = 54/91 (59%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI +A + +DVE + +LE+M L NG R+EIRGFGSFS+ RA R+
Sbjct: 1 MTKSDLIEQLAASRMHMPAKDVEAAIKEILEQMASTLQNGDRIEIRGFGSFSLHYRAPRV 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + + K VP F+ GK L+ER+N
Sbjct: 61 GRNPKTGDKVELTGKYVPHFKPGKELRERVN 91
>gi|193213517|ref|YP_001999470.1| histone family protein DNA-binding protein [Chlorobaculum parvum
NCIB 8327]
gi|193086994|gb|ACF12270.1| histone family protein DNA-binding protein [Chlorobaculum parvum
NCIB 8327]
Length = 91
Score = 106 bits (265), Expect = 1e-21, Method: Composition-based stats.
Identities = 29/90 (32%), Positives = 46/90 (51%), Gaps = 1/90 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ L+ IA + + + E+ VN + +T L G V + GFG+F+ RA R
Sbjct: 1 MSKAELVEQIAAET-GMTKAEAERAVNAFINVVTSTLKGGDDVTLVGFGTFTTGDRAERQ 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P + I++ K V F+ GK LK+ +
Sbjct: 60 GRNPQTGETITIAAKKVVKFKPGKALKDEI 89
>gi|332342355|gb|AEE55689.1| integration host factor, beta subunit IhfB [Escherichia coli
UMNK88]
Length = 94
Score = 106 bits (265), Expect = 1e-21, Method: Composition-based stats.
Identities = 40/91 (43%), Positives = 52/91 (57%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI +A + + + VE V +LE M LA G R+EIRGFGSFS+ RA R
Sbjct: 1 MTKSELIERLATQQSHIPVKTVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + +E K VP F+ GK L++R N
Sbjct: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRAN 91
>gi|259908918|ref|YP_002649274.1| integration host factor subunit beta [Erwinia pyrifoliae Ep1/96]
gi|224964540|emb|CAX56050.1| Integration host factor beta-subunit (IHF-beta) [Erwinia
pyrifoliae Ep1/96]
gi|283478914|emb|CAY74830.1| Integration host factor beta-subunit (IHF-beta) [Erwinia
pyrifoliae DSM 12163]
Length = 95
Score = 106 bits (265), Expect = 1e-21, Method: Composition-based stats.
Identities = 38/91 (41%), Positives = 52/91 (57%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI +A + + + VE V +LE M L+ G R+E+RGFGSFS+ RA R
Sbjct: 1 MTKSELIERLAGQQSHIQAKVVEDAVKEMLEHMATTLSEGERIEVRGFGSFSLHYRAPRT 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + +E K VP F+ GK L++R N
Sbjct: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRAN 91
>gi|167623972|ref|YP_001674266.1| integration host factor subunit beta [Shewanella halifaxensis
HAW-EB4]
gi|189045044|sp|B0TT46|IHFB_SHEHH RecName: Full=Integration host factor subunit beta;
Short=IHF-beta
gi|167353994|gb|ABZ76607.1| integration host factor, beta subunit [Shewanella halifaxensis
HAW-EB4]
Length = 95
Score = 106 bits (265), Expect = 1e-21, Method: Composition-based stats.
Identities = 39/92 (42%), Positives = 57/92 (61%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI +A + +L+ ++VE + +LE+M L G R+EIRGFGSFS+ RA R
Sbjct: 1 MTKSELIEKLATRQSQLSAKEVEAAIKEMLEQMADTLEAGDRIEIRGFGSFSLHYRAPRT 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P + +E K VP F+ GK L+ER+++
Sbjct: 61 GRNPKTGTSVELEGKYVPHFKPGKELRERVDA 92
>gi|146328836|ref|YP_001209044.1| integration host factor, beta subunit [Dichelobacter nodosus
VCS1703A]
gi|166918544|sp|A5EWQ2|IHFB_DICNV RecName: Full=Integration host factor subunit beta;
Short=IHF-beta
gi|146232306|gb|ABQ13284.1| integration host factor, beta subunit [Dichelobacter nodosus
VCS1703A]
Length = 96
Score = 106 bits (265), Expect = 1e-21, Method: Composition-based stats.
Identities = 42/93 (45%), Positives = 57/93 (61%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI + K P+L QDVE V +++E + L G RVEIRGFGSFS+ R +R
Sbjct: 1 MTKSELIERLVMKYPQLRAQDVEDTVKLMIERICHTLEKGDRVEIRGFGSFSLHYRESRQ 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSP 93
R P + + V K +P+FRAGK L+ER++
Sbjct: 61 GRNPKTGESVRVPAKSIPYFRAGKELRERVDEE 93
>gi|146311088|ref|YP_001176162.1| integration host factor subunit beta [Enterobacter sp. 638]
gi|166918547|sp|A4W8T1|IHFB_ENT38 RecName: Full=Integration host factor subunit beta;
Short=IHF-beta
gi|145317964|gb|ABP60111.1| integration host factor, beta subunit [Enterobacter sp. 638]
Length = 95
Score = 106 bits (265), Expect = 1e-21, Method: Composition-based stats.
Identities = 40/91 (43%), Positives = 52/91 (57%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI +A + + + VE V +LE M LA G R+EIRGFGSFS+ RA R
Sbjct: 1 MTKSELIERLASQQSHIPAKAVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + +E K VP F+ GK L++R N
Sbjct: 61 GRNPKTGDKVDLEGKYVPHFKPGKELRDRAN 91
>gi|320108132|ref|YP_004183722.1| histone family protein DNA-binding protein [Terriglobus saanensis
SP1PR4]
gi|319926653|gb|ADV83728.1| histone family protein DNA-binding protein [Terriglobus saanensis
SP1PR4]
Length = 107
Score = 106 bits (265), Expect = 1e-21, Method: Composition-based stats.
Identities = 35/95 (36%), Positives = 52/95 (54%), Gaps = 1/95 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ L+ + L +D E IV L E + AL +VEIRGFGSF R+R +R+
Sbjct: 1 MTKADLVDKVTD-LGDLTRRDGEIIVETLFEGVVSALKADDKVEIRGFGSFRTRQRNSRI 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDS 95
R P + + V K VPFF+ K L++ +N+ +
Sbjct: 60 GRNPKTGERVDVPAKRVPFFKPSKELRDLVNTTKA 94
>gi|297584429|ref|YP_003700209.1| histone family protein DNA-binding protein [Bacillus
selenitireducens MLS10]
gi|297142886|gb|ADH99643.1| histone family protein DNA-binding protein [Bacillus
selenitireducens MLS10]
Length = 90
Score = 106 bits (265), Expect = 1e-21, Method: Composition-based stats.
Identities = 33/91 (36%), Positives = 53/91 (58%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI +A+ + L+ +D V+ + E +T +L G +V++ GFG+F VR+RAAR
Sbjct: 1 MNKTELINAVAE-SADLSKKDATSAVDAVFEVITDSLKKGDKVQLIGFGNFEVRERAARK 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + I + VP F+ GK LK+ +
Sbjct: 60 GRNPQTGEEIEIPASNVPAFKPGKALKDAVK 90
>gi|262196426|ref|YP_003267635.1| histone family protein DNA-binding protein [Haliangium ochraceum
DSM 14365]
gi|262079773|gb|ACY15742.1| histone family protein DNA-binding protein [Haliangium ochraceum
DSM 14365]
Length = 168
Score = 106 bits (265), Expect = 1e-21, Method: Composition-based stats.
Identities = 39/91 (42%), Positives = 56/91 (61%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI +++ KL E+IVN + + M AL +G +EIRGFGSF+VR+ A
Sbjct: 1 MTKSELIEQVSE-LLKLPNGKAEQIVNCIFDSMVSALQDGDGIEIRGFGSFTVRQYKAYE 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + + V K +PFF+ GK+L+ER+N
Sbjct: 60 GRNPRTGETVHVAPKRLPFFKVGKDLRERVN 90
>gi|331005201|ref|ZP_08328595.1| DNA-binding protein HU-beta [gamma proteobacterium IMCC1989]
gi|330420983|gb|EGG95255.1| DNA-binding protein HU-beta [gamma proteobacterium IMCC1989]
Length = 91
Score = 106 bits (265), Expect = 1e-21, Method: Composition-based stats.
Identities = 35/91 (38%), Positives = 50/91 (54%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI IA + L + ++ +LE + L NG V + GFG+FSV+ RAAR
Sbjct: 1 MNKSELIDAIAA-SADLPKAAAGRALDAVLETIESTLKNGDPVTLVGFGTFSVKDRAART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P I + +P F+AGK+LK+ +N
Sbjct: 60 GRNPQTGAPIQIAAAKIPGFKAGKSLKDAVN 90
>gi|157961895|ref|YP_001501929.1| integration host factor subunit beta [Shewanella pealeana ATCC
700345]
gi|189045045|sp|A8H4A7|IHFB_SHEPA RecName: Full=Integration host factor subunit beta;
Short=IHF-beta
gi|157846895|gb|ABV87394.1| integration host factor, beta subunit [Shewanella pealeana ATCC
700345]
Length = 95
Score = 106 bits (265), Expect = 1e-21, Method: Composition-based stats.
Identities = 39/92 (42%), Positives = 57/92 (61%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI +A + +L+ ++VE + +LE+M L G R+EIRGFGSFS+ RA R
Sbjct: 1 MTKSELIEKLATRQSQLSAKEVEAAIKEMLEQMADTLETGDRIEIRGFGSFSLHYRAPRT 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P + +E K VP F+ GK L+ER+++
Sbjct: 61 GRNPKTGTSVELEGKYVPHFKPGKELRERVDA 92
>gi|157369953|ref|YP_001477942.1| integration host factor subunit beta [Serratia proteamaculans
568]
gi|270261193|ref|ZP_06189466.1| integration host factor, beta subunit [Serratia odorifera 4Rx13]
gi|166975886|sp|A8GCH4|IHFB_SERP5 RecName: Full=Integration host factor subunit beta;
Short=IHF-beta
gi|157321717|gb|ABV40814.1| integration host factor, beta subunit [Serratia proteamaculans
568]
gi|270044677|gb|EFA17768.1| integration host factor, beta subunit [Serratia odorifera 4Rx13]
Length = 94
Score = 106 bits (265), Expect = 1e-21, Method: Composition-based stats.
Identities = 39/91 (42%), Positives = 54/91 (59%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI +A + + + VE V +LE M LA+G R+EIRGFGSFS+ RA R+
Sbjct: 1 MTKSELIERLAGQQSHVPAKAVEDAVKEMLEHMAATLADGERIEIRGFGSFSLHYRAPRV 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + ++ K VP F+ GK L++R N
Sbjct: 61 GRNPKTGDKVELDGKYVPHFKPGKELRDRAN 91
>gi|255318959|ref|ZP_05360184.1| DNA-binding protein HU-beta [Acinetobacter radioresistens SK82]
gi|262378305|ref|ZP_06071462.1| integration host factor, beta subunit [Acinetobacter
radioresistens SH164]
gi|255303976|gb|EET83168.1| DNA-binding protein HU-beta [Acinetobacter radioresistens SK82]
gi|262299590|gb|EEY87502.1| integration host factor, beta subunit [Acinetobacter
radioresistens SH164]
Length = 90
Score = 106 bits (265), Expect = 1e-21, Method: Composition-based stats.
Identities = 35/90 (38%), Positives = 53/90 (58%), Gaps = 1/90 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI IA+K L+ D K ++ + +T+AL G V + GFG+F V++RAAR
Sbjct: 1 MNKSELIDAIAEK-GGLSKTDAGKALDATIASITEALKQGDTVTLVGFGTFGVKERAART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P + + ++ VP F+AGK LK+ +
Sbjct: 60 GRNPKTGEELQIKASKVPSFKAGKGLKDSV 89
>gi|123441853|ref|YP_001005836.1| integration host factor subunit beta [Yersinia enterocolitica
subsp. enterocolitica 8081]
gi|332162205|ref|YP_004298782.1| integration host factor subunit beta [Yersinia enterocolitica
subsp. palearctica 105.5R(r)]
gi|166975896|sp|A1JMJ0|IHFB_YERE8 RecName: Full=Integration host factor subunit beta;
Short=IHF-beta
gi|122088814|emb|CAL11620.1| integration host factor beta-subunit [Yersinia enterocolitica
subsp. enterocolitica 8081]
gi|325666435|gb|ADZ43079.1| integration host factor subunit beta [Yersinia enterocolitica
subsp. palearctica 105.5R(r)]
gi|330862895|emb|CBX73032.1| integration host factor subunit beta [Yersinia enterocolitica
W22703]
Length = 94
Score = 106 bits (265), Expect = 1e-21, Method: Composition-based stats.
Identities = 40/91 (43%), Positives = 53/91 (58%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI +A + + + VE V +LE M LA G R+EIRGFGSFS+ RA R+
Sbjct: 1 MTKSELIERLAGQQSHVPTKVVEDAVKEMLEHMAGTLAEGERIEIRGFGSFSLHYRAPRV 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + +E K VP F+ GK L++R N
Sbjct: 61 GRNPKTGAKVELEGKYVPHFKPGKELRDRAN 91
>gi|119476199|ref|ZP_01616551.1| DNA-binding protein HU [marine gamma proteobacterium HTCC2143]
gi|119450826|gb|EAW32060.1| DNA-binding protein HU [marine gamma proteobacterium HTCC2143]
Length = 90
Score = 106 bits (265), Expect = 1e-21, Method: Composition-based stats.
Identities = 35/91 (38%), Positives = 53/91 (58%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI IA + L + ++ ++E +T AL +G +V + GFG+F+V+ RAAR
Sbjct: 1 MNKSELIEAIAA-SADLPKAAAGRALDAMVETVTGALKDGDQVVLVGFGTFAVKDRAART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P I ++ VP F+AGK LK+ +N
Sbjct: 60 GRNPQTGAEIQIKAAKVPGFKAGKALKDAVN 90
>gi|238789316|ref|ZP_04633103.1| Integration host factor subunit beta [Yersinia frederiksenii ATCC
33641]
gi|238722648|gb|EEQ14301.1| Integration host factor subunit beta [Yersinia frederiksenii ATCC
33641]
Length = 94
Score = 106 bits (265), Expect = 1e-21, Method: Composition-based stats.
Identities = 39/91 (42%), Positives = 53/91 (58%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI +A + + + VE V +LE M LA G R+EIRGFGSFS+ RA R+
Sbjct: 1 MTKSELIERLAGQQSHVPAKVVEDAVKEMLEHMAGTLAEGERIEIRGFGSFSLHYRAPRV 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + ++ K VP F+ GK L++R N
Sbjct: 61 GRNPKTGTKVELDGKYVPHFKPGKELRDRAN 91
>gi|124290|sp|P23303|IHFB_SERMA RecName: Full=Integration host factor subunit beta;
Short=IHF-beta
gi|152829|gb|AAA26557.1| integration host factor beta-subunit [Serratia marcescens]
Length = 94
Score = 106 bits (264), Expect = 1e-21, Method: Composition-based stats.
Identities = 39/91 (42%), Positives = 53/91 (58%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI +A + + + VE V +LE M LA G R+EIRGFGSFS+ RA R+
Sbjct: 1 MTKSELIERLAGQQSHIPAKAVEDAVKEMLEHMAATLAEGERIEIRGFGSFSLHYRAPRV 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + ++ K VP F+ GK L++R N
Sbjct: 61 GRNPKTGDKVELDGKYVPHFKPGKELRDRAN 91
>gi|239994306|ref|ZP_04714830.1| integration host factor subunit beta [Alteromonas macleodii ATCC
27126]
Length = 95
Score = 106 bits (264), Expect = 1e-21, Method: Composition-based stats.
Identities = 38/92 (41%), Positives = 58/92 (63%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI +A + + +++E + LLE+M Q L G R+EIRGFGSFS+ RA R+
Sbjct: 1 MTKSELIERLADQARHIPAKELELAIKELLEQMAQTLQKGERIEIRGFGSFSLHYRAPRV 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P + + ++ K VP F+ GK L+ER+++
Sbjct: 61 GRNPKTGETVKLDGKYVPHFKPGKELRERVDA 92
>gi|256112658|ref|ZP_05453579.1| integration host factor subunit beta [Brucella melitensis bv. 3
str. Ether]
gi|265994098|ref|ZP_06106655.1| integration host factor subunit beta [Brucella melitensis bv. 3
str. Ether]
gi|262765079|gb|EEZ11000.1| integration host factor subunit beta [Brucella melitensis bv. 3
str. Ether]
Length = 94
Score = 106 bits (264), Expect = 1e-21, Method: Composition-based stats.
Identities = 48/91 (52%), Positives = 62/91 (68%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
MIKS L+ IA +NP L +DV IV + +E+T ALA G RVE+RGFG+FSV+ R R
Sbjct: 1 MIKSELVQIIASRNPHLFQRDVVNIVGAVFDEITNALAEGNRVELRGFGAFSVKNRPTRS 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + + VEEK VPFF+ GK L++RLN
Sbjct: 61 GRNPRTGETVDVEEKWVPFFKTGKKLRDRLN 91
>gi|330446590|ref|ZP_08310242.1| putative bacterial nucleoid DNA-binding protein [Photobacterium
leiognathi subsp. mandapamensis svers.1.1.]
gi|328490781|dbj|GAA04739.1| putative bacterial nucleoid DNA-binding protein [Photobacterium
leiognathi subsp. mandapamensis svers.1.1.]
Length = 90
Score = 106 bits (264), Expect = 1e-21, Method: Composition-based stats.
Identities = 31/91 (34%), Positives = 53/91 (58%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ L+ IA+ + ++ + ++ +E +++ L +G +V + GFG+FSVR+RAAR
Sbjct: 1 MNKTQLVDKIAE-SADISKASAGRALDAFIEAVSETLKDGDQVALVGFGTFSVRERAART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P I + VP F+ GK LK+ +N
Sbjct: 60 GRNPQTGAEIQIAAAKVPGFKPGKALKDSVN 90
>gi|85058652|ref|YP_454354.1| transcriptional regulator HU subunit beta [Sodalis glossinidius
str. 'morsitans']
gi|84779172|dbj|BAE73949.1| DNA-binding protein HU-beta [Sodalis glossinidius str.
'morsitans']
Length = 90
Score = 106 bits (264), Expect = 1e-21, Method: Composition-based stats.
Identities = 34/91 (37%), Positives = 53/91 (58%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI IA ++ + ++ ++ +T++L G V + GFG+F+VR+R+AR
Sbjct: 1 MNKSQLIDKIAA-GADISKAAAGRALDAIIGSVTESLQQGDDVALVGFGTFTVRERSART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P K I++ VP FRAGK LK+ +N
Sbjct: 60 GRNPQTGKEITIAAAKVPGFRAGKGLKDAVN 90
>gi|262376135|ref|ZP_06069365.1| integration host factor, beta subunit [Acinetobacter lwoffii
SH145]
gi|262308736|gb|EEY89869.1| integration host factor, beta subunit [Acinetobacter lwoffii
SH145]
Length = 90
Score = 106 bits (264), Expect = 1e-21, Method: Composition-based stats.
Identities = 35/90 (38%), Positives = 53/90 (58%), Gaps = 1/90 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI IA+K L+ D K ++ + +T+AL +G V + GFG+F V++RAAR
Sbjct: 1 MNKSELIDAIAEK-GGLSKADAGKALDATIASVTEALKSGDTVTLVGFGTFGVKERAART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P + ++ VP F+AGK LK+ +
Sbjct: 60 GRNPQTGATLEIKASKVPSFKAGKGLKDAV 89
>gi|163868074|ref|YP_001609278.1| DNA-binding protein [Bartonella tribocorum CIP 105476]
gi|240850277|ref|YP_002971670.1| DNA-binding protein [Bartonella grahamii as4aup]
gi|161017725|emb|CAK01283.1| DNA-binding protein [Bartonella tribocorum CIP 105476]
gi|240267400|gb|ACS50988.1| DNA-binding protein [Bartonella grahamii as4aup]
Length = 92
Score = 106 bits (264), Expect = 1e-21, Method: Composition-based stats.
Identities = 36/93 (38%), Positives = 53/93 (56%), Gaps = 1/93 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS L+ ++A+K ++ +V+ + +T+ALA+GG V + GFGSF V RAA
Sbjct: 1 MNKSELVSSVAEK-AGVSKAQAGAVVDAFMASVTEALASGGDVRLPGFGSFEVSHRAATK 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSP 93
R P I + + VP F AGK+LKE +N
Sbjct: 60 GRNPSTGAEIDIPARSVPKFSAGKSLKEAVNKK 92
>gi|197335248|ref|YP_002155560.1| DNA-binding protein HU-beta [Vibrio fischeri MJ11]
gi|197316738|gb|ACH66185.1| DNA-binding protein HU-beta [Vibrio fischeri MJ11]
Length = 90
Score = 106 bits (264), Expect = 2e-21, Method: Composition-based stats.
Identities = 35/91 (38%), Positives = 54/91 (59%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS L+ IA+ + ++ + ++ L+E +T+ L +G +V + GFGSF VR+RAAR
Sbjct: 1 MNKSQLVDQIAE-SADISKAAAGRALDALVETVTETLKSGDQVTLVGFGSFVVRERAART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + I + VP F+AGK LK+ N
Sbjct: 60 GRNPKTGEAIEISAAKVPAFKAGKALKDACN 90
>gi|89073233|ref|ZP_01159763.1| putative bacterial nucleoid DNA-binding protein [Photobacterium
sp. SKA34]
gi|90579275|ref|ZP_01235085.1| putative bacterial nucleoid DNA-binding protein [Vibrio angustum
S14]
gi|89050943|gb|EAR56407.1| putative bacterial nucleoid DNA-binding protein [Photobacterium
sp. SKA34]
gi|90440108|gb|EAS65289.1| putative bacterial nucleoid DNA-binding protein [Vibrio angustum
S14]
Length = 90
Score = 106 bits (264), Expect = 2e-21, Method: Composition-based stats.
Identities = 31/91 (34%), Positives = 52/91 (57%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ L+ IA+ + ++ + ++ +E ++ L +G +V + GFG+FSVR+RAAR
Sbjct: 1 MNKTQLVDKIAE-SADISKASAGRALDAFIEAVSDTLKDGEQVALVGFGTFSVRERAART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P I + VP F+ GK LK+ +N
Sbjct: 60 GRNPQTGAEIQIAAAKVPGFKPGKALKDSVN 90
>gi|206575911|ref|YP_002239439.1| integration host factor, beta subunit [Klebsiella pneumoniae 342]
gi|288936290|ref|YP_003440349.1| integration host factor subunit beta [Klebsiella variicola At-22]
gi|290510655|ref|ZP_06550025.1| integration host factor, beta subunit [Klebsiella sp. 1_1_55]
gi|226709796|sp|B5XY84|IHFB_KLEP3 RecName: Full=Integration host factor subunit beta;
Short=IHF-beta
gi|206564969|gb|ACI06745.1| integration host factor, beta subunit [Klebsiella pneumoniae 342]
gi|288890999|gb|ADC59317.1| integration host factor, beta subunit [Klebsiella variicola
At-22]
gi|289777371|gb|EFD85369.1| integration host factor, beta subunit [Klebsiella sp. 1_1_55]
Length = 95
Score = 106 bits (264), Expect = 2e-21, Method: Composition-based stats.
Identities = 40/91 (43%), Positives = 52/91 (57%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI +A + + + VE V +LE M LA G R+EIRGFGSFS+ RA R
Sbjct: 1 MTKSELIERLASQQSHIPAKAVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRT 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + +E K VP F+ GK L++R N
Sbjct: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRAN 91
>gi|332971824|gb|EGK10771.1| DNA-binding protein HU-beta [Psychrobacter sp. 1501(2011)]
Length = 90
Score = 106 bits (264), Expect = 2e-21, Method: Composition-based stats.
Identities = 36/91 (39%), Positives = 53/91 (58%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS L+ +IA+K+ LN +N ++E + +AL N + + GFG+FSV+ R AR
Sbjct: 1 MNKSELVDSIAEKS-GLNKTQAADALNAMMESVGEALENNDTISLVGFGTFSVKDRKART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + + VP F+AGK LK+RLN
Sbjct: 60 GRNPKTGDELQIPASRVPHFKAGKGLKDRLN 90
>gi|326386334|ref|ZP_08207958.1| histone-like DNA-binding protein [Novosphingobium nitrogenifigens
DSM 19370]
gi|326209559|gb|EGD60352.1| histone-like DNA-binding protein [Novosphingobium nitrogenifigens
DSM 19370]
Length = 93
Score = 106 bits (264), Expect = 2e-21, Method: Composition-based stats.
Identities = 39/93 (41%), Positives = 64/93 (68%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
MI+S L+ +AK++P + ++E++V++ +E+ + LA GGRVE+RGFG+FS R+R AR
Sbjct: 1 MIRSELLQVLAKQSPDMRSDEIERVVDVFFDEIGKRLAEGGRVELRGFGAFSTRERDARK 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSP 93
R P + + V K VP+F+ GK ++ RLN+
Sbjct: 61 GRNPRTGEAVDVPGKRVPYFKPGKEMRVRLNAE 93
>gi|220922182|ref|YP_002497483.1| integration host factor subunit beta [Methylobacterium nodulans
ORS 2060]
gi|219946788|gb|ACL57180.1| integration host factor, beta subunit [Methylobacterium nodulans
ORS 2060]
Length = 106
Score = 106 bits (264), Expect = 2e-21, Method: Composition-based stats.
Identities = 46/92 (50%), Positives = 64/92 (69%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
MIKS L+ IA++NP L +DVE IVN +L+ + ALA G RVE+RGFG+FSV++R AR
Sbjct: 1 MIKSELVLKIAEQNPHLYQRDVENIVNAILDTIADALARGDRVELRGFGAFSVKRREARR 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P ++V EK +P F+ GK ++ RLN+
Sbjct: 61 GRNPRTGAAVAVAEKAIPVFKTGKEMRLRLNA 92
>gi|90406779|ref|ZP_01214971.1| putative integration host factor, beta subunit [Psychromonas sp.
CNPT3]
gi|90312016|gb|EAS40109.1| putative integration host factor, beta subunit [Psychromonas sp.
CNPT3]
Length = 95
Score = 106 bits (264), Expect = 2e-21, Method: Composition-based stats.
Identities = 40/91 (43%), Positives = 57/91 (62%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI + K+ +L+ ++VE V L+ MT +LA G R+E+RGFGSFS+ RA R+
Sbjct: 1 MTKSDLIEKLTNKHFQLSVREVEDSVKETLQLMTNSLAQGERIEVRGFGSFSLHYRAPRI 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + + K VP F+ GK L+ER+N
Sbjct: 61 GRNPKTGDKVELGGKYVPHFKPGKELRERVN 91
>gi|292487831|ref|YP_003530706.1| integration host factor subunit beta [Erwinia amylovora CFBP1430]
gi|292899058|ref|YP_003538427.1| integration host factor subunit beta [Erwinia amylovora ATCC
49946]
gi|291198906|emb|CBJ46016.1| integration host factor beta-subunit [Erwinia amylovora ATCC
49946]
gi|291553253|emb|CBA20298.1| Integration host factor beta-subunit (IHF-beta) [Erwinia
amylovora CFBP1430]
gi|312171952|emb|CBX80209.1| Integration host factor beta-subunit (IHF-beta) [Erwinia
amylovora ATCC BAA-2158]
Length = 95
Score = 106 bits (264), Expect = 2e-21, Method: Composition-based stats.
Identities = 39/91 (42%), Positives = 52/91 (57%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI +A + + + VE V +LE M L+ G R+EIRGFGSFS+ RA R
Sbjct: 1 MTKSELIERLAGQQSHIQAKVVEDAVKEMLEHMATTLSEGERIEIRGFGSFSLHYRAPRT 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + +E K VP F+ GK L++R N
Sbjct: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRAN 91
>gi|226952951|ref|ZP_03823415.1| integration host factor (IHF),beta subunit, site specific
recombination [Acinetobacter sp. ATCC 27244]
gi|294650533|ref|ZP_06727890.1| integration host factor subunit beta [Acinetobacter haemolyticus
ATCC 19194]
gi|226836272|gb|EEH68655.1| integration host factor (IHF),beta subunit, site specific
recombination [Acinetobacter sp. ATCC 27244]
gi|292823530|gb|EFF82376.1| integration host factor subunit beta [Acinetobacter haemolyticus
ATCC 19194]
Length = 100
Score = 106 bits (264), Expect = 2e-21, Method: Composition-based stats.
Identities = 42/91 (46%), Positives = 57/91 (62%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
KS LI IA KNP L VE V +++++M +AL+NG R+EIRGFGSF++ R RL
Sbjct: 7 NKSDLIERIALKNPHLAEPLVEDAVKIMIDQMIEALSNGDRIEIRGFGSFALHHREPRLG 66
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P K + V K VP F+ GK L++ +N
Sbjct: 67 RNPKTGKAVDVAAKAVPHFKPGKALRDAVNE 97
>gi|308185911|ref|YP_003930042.1| Integration host factor subunit alpha (IHF- alpha) [Pantoea
vagans C9-1]
gi|308056421|gb|ADO08593.1| Integration host factor subunit alpha (IHF- alpha) [Pantoea
vagans C9-1]
Length = 93
Score = 106 bits (264), Expect = 2e-21, Method: Composition-based stats.
Identities = 35/90 (38%), Positives = 51/90 (56%), Gaps = 1/90 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
KS LI IA + ++ ++++ + ++ AL G V + GFG+FSVR RAAR
Sbjct: 5 NKSQLIDKIAA-DADISKAAAGRVLDAFMGSVSDALKEGDEVALVGFGTFSVRDRAARTG 63
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P K I++ VP FRAGK LK+ +N
Sbjct: 64 RNPQTGKEITIPAGKVPGFRAGKALKDAVN 93
>gi|251790645|ref|YP_003005366.1| transcriptional regulator HU subunit beta [Dickeya zeae Ech1591]
gi|271499600|ref|YP_003332625.1| histone family protein DNA-binding protein [Dickeya dadantii
Ech586]
gi|307129930|ref|YP_003881946.1| HU, DNA-binding transcriptional regulator, subunit beta [Dickeya
dadantii 3937]
gi|247539266|gb|ACT07887.1| histone family protein DNA-binding protein [Dickeya zeae Ech1591]
gi|270343155|gb|ACZ75920.1| histone family protein DNA-binding protein [Dickeya dadantii
Ech586]
gi|306527459|gb|ADM97389.1| HU, DNA-binding transcriptional regulator, beta subunit [Dickeya
dadantii 3937]
Length = 90
Score = 106 bits (264), Expect = 2e-21, Method: Composition-based stats.
Identities = 37/91 (40%), Positives = 55/91 (60%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI IA + ++ ++++ ++ +T++L G V + GFG+FSVR+RAAR
Sbjct: 1 MNKSQLIDKIAA-DADISKAAAGRVLDAIIGSVTESLKAGDDVALVGFGTFSVRERAART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P K IS+ VP FRAGK LK+ +N
Sbjct: 60 GRNPQTGKEISIPAAKVPGFRAGKALKDSVN 90
>gi|30249908|ref|NP_841978.1| histone-like DNA-binding protein [Nitrosomonas europaea ATCC
19718]
gi|81722152|sp|Q82TD7|IHFB_NITEU RecName: Full=Integration host factor subunit beta;
Short=IHF-beta
gi|30180945|emb|CAD85872.1| Bacterial histone-like DNA-binding protein [Nitrosomonas europaea
ATCC 19718]
Length = 105
Score = 106 bits (264), Expect = 2e-21, Method: Composition-based stats.
Identities = 39/92 (42%), Positives = 63/92 (68%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI +A++ P+L +D E +V ++L+ M ++L+ G R+EIRGFGSF + R +R+
Sbjct: 1 MTKSELISKLAERFPQLLAKDAELVVKIILDAMAKSLSRGERIEIRGFGSFDLNYRPSRV 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P + + + V EK VP F+AGK ++E ++S
Sbjct: 61 GRNPKSGEKVHVPEKYVPHFKAGKKMRELIDS 92
>gi|148555324|ref|YP_001262906.1| histone family protein DNA-binding protein [Sphingomonas
wittichii RW1]
gi|148500514|gb|ABQ68768.1| histone family protein DNA-binding protein [Sphingomonas
wittichii RW1]
Length = 92
Score = 106 bits (264), Expect = 2e-21, Method: Composition-based stats.
Identities = 43/91 (47%), Positives = 63/91 (69%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
MI+S L+ +++ NP L+ ++VEKIV+ L + +T+ LA GGRVE+RGFG+FS R R AR+
Sbjct: 1 MIRSELVQLLSQDNPDLSPKEVEKIVSTLFDAITKRLAEGGRVELRGFGAFSTRARDARI 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + V K VP+F+ GK ++ RLN
Sbjct: 61 GRNPRTGDTVPVSAKRVPYFKPGKEMRVRLN 91
>gi|207999|gb|AAA72912.1| HBsu protein [synthetic construct]
Length = 98
Score = 106 bits (264), Expect = 2e-21, Method: Composition-based stats.
Identities = 32/90 (35%), Positives = 55/90 (61%), Gaps = 1/90 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI +A+ + +L+ +D K V+ + + + AL NG ++++ GFG+F VR+R+AR
Sbjct: 7 MNKTELINAVAEAS-ELSKKDATKAVDSVFDTILDALKNGDKIQLIGFGNFEVRERSARK 65
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P + I + VP F+ GK LK+ +
Sbjct: 66 GRNPQTGEEIEIPASKVPAFKPGKALKDAV 95
>gi|154246162|ref|YP_001417120.1| integration host factor subunit beta [Xanthobacter autotrophicus
Py2]
gi|226709820|sp|A7IHH0|IHFB_XANP2 RecName: Full=Integration host factor subunit beta;
Short=IHF-beta
gi|154160247|gb|ABS67463.1| integration host factor, beta subunit [Xanthobacter autotrophicus
Py2]
Length = 94
Score = 105 bits (263), Expect = 2e-21, Method: Composition-based stats.
Identities = 50/94 (53%), Positives = 66/94 (70%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
MIKS L+ IA+ NP L +DVE IVN +LE++ AL G RVE+RGFG+FSV+KR AR+
Sbjct: 1 MIKSELVQKIAEANPHLYQRDVENIVNAILEQVASALERGDRVELRGFGAFSVKKRDARV 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSPD 94
R P K + V EK VP+F+ GK ++ERLN+
Sbjct: 61 GRNPRTGKQVDVSEKTVPYFKTGKEMRERLNTGK 94
>gi|34811460|pdb|1OUZ|B Chain B, Crystal Structure Of A Mutant Ihf (Betae44a) Complexed
With A Variant H' Site (T44a)
gi|34811465|pdb|1OWF|B Chain B, Crystal Structure Of A Mutant Ihf (Betae44a) Complexed
With The Native H' Site
Length = 94
Score = 105 bits (263), Expect = 2e-21, Method: Composition-based stats.
Identities = 39/91 (42%), Positives = 51/91 (56%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI +A + + + VE V +LE M LA G R+ IRGFGSFS+ RA R
Sbjct: 1 MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIAIRGFGSFSLHYRAPRT 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + +E K VP F+ GK L++R N
Sbjct: 61 GRNPKTGDKVELEGKYVPHFKPGKELRDRAN 91
>gi|65318875|ref|ZP_00391834.1| COG0776: Bacterial nucleoid DNA-binding protein [Bacillus anthracis
str. A2012]
gi|228938721|ref|ZP_04101325.1| DNA-binding protein HU [Bacillus thuringiensis serovar berliner
ATCC 10792]
gi|228951986|ref|ZP_04114083.1| DNA-binding protein HU [Bacillus thuringiensis serovar kurstaki
str. T03a001]
gi|228957885|ref|ZP_04119625.1| DNA-binding protein HU [Bacillus thuringiensis serovar pakistani
str. T13001]
gi|228978213|ref|ZP_04138590.1| DNA-binding protein HU [Bacillus thuringiensis Bt407]
gi|228984688|ref|ZP_04144861.1| DNA-binding protein HU [Bacillus thuringiensis serovar tochigiensis
BGSC 4Y1]
gi|229043354|ref|ZP_04191072.1| DNA-binding protein HU [Bacillus cereus AH676]
gi|229078792|ref|ZP_04211345.1| DNA-binding protein HU [Bacillus cereus Rock4-2]
gi|229096101|ref|ZP_04227074.1| DNA-binding protein HU [Bacillus cereus Rock3-29]
gi|229102213|ref|ZP_04232922.1| DNA-binding protein HU [Bacillus cereus Rock3-28]
gi|229109065|ref|ZP_04238665.1| DNA-binding protein HU [Bacillus cereus Rock1-15]
gi|229115057|ref|ZP_04244467.1| DNA-binding protein HU [Bacillus cereus Rock1-3]
gi|229144208|ref|ZP_04272622.1| DNA-binding protein HU [Bacillus cereus BDRD-ST24]
gi|229149807|ref|ZP_04278036.1| DNA-binding protein HU [Bacillus cereus m1550]
gi|229178017|ref|ZP_04305389.1| DNA-binding protein HU [Bacillus cereus 172560W]
gi|229183804|ref|ZP_04311021.1| DNA-binding protein HU [Bacillus cereus BGSC 6E1]
gi|228599653|gb|EEK57256.1| DNA-binding protein HU [Bacillus cereus BGSC 6E1]
gi|228605505|gb|EEK62954.1| DNA-binding protein HU [Bacillus cereus 172560W]
gi|228633671|gb|EEK90271.1| DNA-binding protein HU [Bacillus cereus m1550]
gi|228639216|gb|EEK95632.1| DNA-binding protein HU [Bacillus cereus BDRD-ST24]
gi|228668197|gb|EEL23629.1| DNA-binding protein HU [Bacillus cereus Rock1-3]
gi|228674343|gb|EEL29587.1| DNA-binding protein HU [Bacillus cereus Rock1-15]
gi|228681114|gb|EEL35282.1| DNA-binding protein HU [Bacillus cereus Rock3-28]
gi|228687061|gb|EEL40966.1| DNA-binding protein HU [Bacillus cereus Rock3-29]
gi|228704474|gb|EEL56907.1| DNA-binding protein HU [Bacillus cereus Rock4-2]
gi|228726002|gb|EEL77241.1| DNA-binding protein HU [Bacillus cereus AH676]
gi|228775082|gb|EEM23475.1| DNA-binding protein HU [Bacillus thuringiensis serovar tochigiensis
BGSC 4Y1]
gi|228781230|gb|EEM29431.1| DNA-binding protein HU [Bacillus thuringiensis Bt407]
gi|228801801|gb|EEM48678.1| DNA-binding protein HU [Bacillus thuringiensis serovar pakistani
str. T13001]
gi|228807711|gb|EEM54233.1| DNA-binding protein HU [Bacillus thuringiensis serovar kurstaki
str. T03a001]
gi|228820962|gb|EEM66983.1| DNA-binding protein HU [Bacillus thuringiensis serovar berliner
ATCC 10792]
Length = 104
Score = 105 bits (263), Expect = 2e-21, Method: Composition-based stats.
Identities = 33/91 (36%), Positives = 54/91 (59%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI +A+ + L+ +D K V+ + + + +AL G +V++ GFG+F VR+RAAR
Sbjct: 15 MNKTDLINAVAEASS-LSKKDATKAVDAVFDSILEALKQGDKVQLIGFGNFEVRERAARK 73
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + I + VP F+ GK LK+ +
Sbjct: 74 GRNPQTGEEIEIAASKVPAFKPGKALKDAVK 104
>gi|23501983|ref|NP_698110.1| DNA-binding protein HU [Brucella suis 1330]
gi|23347933|gb|AAN30025.1| DNA-binding protein HU [Brucella suis 1330]
Length = 91
Score = 105 bits (263), Expect = 2e-21, Method: Composition-based stats.
Identities = 35/91 (38%), Positives = 50/91 (54%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ L+ +A+K L D V+++L +T AL G V + GFG FSV RAA
Sbjct: 1 MNKNELVAAVAEK-GGLTKADAGTAVDVVLASVTAALKAGEEVRLPGFGVFSVSHRAAST 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P K +++ + VP F AGK LK+ +N
Sbjct: 60 GRNPSTGKEVAIPARNVPKFSAGKGLKDAVN 90
>gi|113461118|ref|YP_719186.1| integration host factor subunit beta [Haemophilus somnus 129PT]
gi|170717700|ref|YP_001784773.1| integration host factor subunit beta [Haemophilus somnus 2336]
gi|123031307|sp|Q0I390|IHFB_HAES1 RecName: Full=Integration host factor subunit beta;
Short=IHF-beta
gi|189045038|sp|B0UUH4|IHFB_HAES2 RecName: Full=Integration host factor subunit beta;
Short=IHF-beta
gi|112823161|gb|ABI25250.1| integration host factor, beta-subunit [Haemophilus somnus 129PT]
gi|168825829|gb|ACA31200.1| integration host factor, beta subunit [Haemophilus somnus 2336]
Length = 94
Score = 105 bits (263), Expect = 2e-21, Method: Composition-based stats.
Identities = 44/91 (48%), Positives = 61/91 (67%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI +A NP + +D+E V +LE+++QAL NG R+EIRGFGSFS+ R +R+
Sbjct: 1 MTKSELIENLASTNPNVPLKDIENAVKDILEQLSQALENGERIEIRGFGSFSLHFRQSRI 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + + + K VP F+AGK LKER+N
Sbjct: 61 GRNPKTGEKVDLSAKYVPHFKAGKELKERVN 91
>gi|320539237|ref|ZP_08038907.1| integration host factor (IHF), DNA-binding protein, beta subunit
[Serratia symbiotica str. Tucson]
gi|320030629|gb|EFW12638.1| integration host factor (IHF), DNA-binding protein, beta subunit
[Serratia symbiotica str. Tucson]
Length = 94
Score = 105 bits (263), Expect = 2e-21, Method: Composition-based stats.
Identities = 39/91 (42%), Positives = 54/91 (59%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI +A + + + VE V +LE M LA+G R+EIRGFGSFS+ RA R+
Sbjct: 1 MTKSELIERLASQQSHIPAKTVEDAVKEILEHMAVTLADGERIEIRGFGSFSLHYRAPRV 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + ++ K VP F+ GK L++R N
Sbjct: 61 GRNPKTGDKVELDGKYVPHFKPGKELRDRAN 91
>gi|123443339|ref|YP_001007313.1| transcriptional regulator HU subunit beta [Yersinia
enterocolitica subsp. enterocolitica 8081]
gi|238759259|ref|ZP_04620426.1| DNA-binding protein HU [Yersinia aldovae ATCC 35236]
gi|238764857|ref|ZP_04625798.1| DNA-binding protein HU [Yersinia kristensenii ATCC 33638]
gi|238783606|ref|ZP_04627627.1| DNA-binding protein HU [Yersinia bercovieri ATCC 43970]
gi|238788011|ref|ZP_04631807.1| DNA-binding protein HU [Yersinia frederiksenii ATCC 33641]
gi|238791434|ref|ZP_04635072.1| DNA-binding protein HU [Yersinia intermedia ATCC 29909]
gi|238795539|ref|ZP_04639054.1| DNA-binding protein HU [Yersinia mollaretii ATCC 43969]
gi|332160752|ref|YP_004297329.1| transcriptional regulator HU subunit beta [Yersinia
enterocolitica subsp. palearctica 105.5R(r)]
gi|122090300|emb|CAL13166.1| DNA-binding protein HU-beta [Yersinia enterocolitica subsp.
enterocolitica 8081]
gi|238696964|gb|EEP89740.1| DNA-binding protein HU [Yersinia kristensenii ATCC 33638]
gi|238702546|gb|EEP95096.1| DNA-binding protein HU [Yersinia aldovae ATCC 35236]
gi|238715484|gb|EEQ07475.1| DNA-binding protein HU [Yersinia bercovieri ATCC 43970]
gi|238720658|gb|EEQ12459.1| DNA-binding protein HU [Yersinia mollaretii ATCC 43969]
gi|238723959|gb|EEQ15603.1| DNA-binding protein HU [Yersinia frederiksenii ATCC 33641]
gi|238729050|gb|EEQ20566.1| DNA-binding protein HU [Yersinia intermedia ATCC 29909]
gi|318604632|emb|CBY26130.1| DNA-binding protein HU-beta [Yersinia enterocolitica subsp.
palearctica Y11]
gi|325664982|gb|ADZ41626.1| transcriptional regulator HU subunit beta [Yersinia
enterocolitica subsp. palearctica 105.5R(r)]
gi|330859946|emb|CBX70275.1| DNA-binding protein HU-beta [Yersinia enterocolitica W22703]
Length = 90
Score = 105 bits (263), Expect = 2e-21, Method: Composition-based stats.
Identities = 35/91 (38%), Positives = 53/91 (58%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI IA ++ + ++ ++ +T++L G V + GFG+F+VR+R+AR
Sbjct: 1 MNKSQLIDKIAA-GADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVRERSART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P K IS+ VP FRAGK LK+ +N
Sbjct: 60 GRNPQTGKEISIPAAKVPGFRAGKGLKDAVN 90
>gi|323701600|ref|ZP_08113272.1| histone family protein DNA-binding protein [Desulfotomaculum
nigrificans DSM 574]
gi|323533373|gb|EGB23240.1| histone family protein DNA-binding protein [Desulfotomaculum
nigrificans DSM 574]
Length = 95
Score = 105 bits (263), Expect = 2e-21, Method: Composition-based stats.
Identities = 32/90 (35%), Positives = 54/90 (60%), Gaps = 1/90 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI +A+K +L +D EK V+ +L+ + +A+A G ++++ GFG+F + R AR
Sbjct: 1 MNKAELISAVAEKT-ELTKKDAEKAVSAVLDSIQEAMAKGDKIQLVGFGTFESKARKARE 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P + I + VP F+ GK LK+ +
Sbjct: 60 GRNPQTGETIQIPATRVPVFKPGKALKDAV 89
>gi|148653424|ref|YP_001280517.1| histone family protein DNA-binding protein [Psychrobacter sp.
PRwf-1]
gi|148572508|gb|ABQ94567.1| histone family protein DNA-binding protein [Psychrobacter sp.
PRwf-1]
Length = 90
Score = 105 bits (263), Expect = 2e-21, Method: Composition-based stats.
Identities = 36/91 (39%), Positives = 54/91 (59%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS L+ +IA+K+ LN +N ++E + +AL N + + GFG+FSV++R AR
Sbjct: 1 MNKSELVDSIAEKS-GLNKTQAADALNAMMESVGEALENNDTISLVGFGTFSVKERKART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + + VP F+AGK LK+RLN
Sbjct: 60 GRNPKTGDELQIPASRVPHFKAGKGLKDRLN 90
>gi|40062781|gb|AAR37675.1| DNA-binding protein HU [uncultured marine bacterium 439]
Length = 90
Score = 105 bits (263), Expect = 2e-21, Method: Composition-based stats.
Identities = 38/91 (41%), Positives = 49/91 (53%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS L+ IA L D + ++ ++ ALA+G +V I GFGSF VR RAAR
Sbjct: 1 MNKSDLVAAIAD-GSGLTKADAARALSATTGAISGALASGDKVSITGFGSFLVRSRAARS 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P I + VP F+AGK LKE +N
Sbjct: 60 GRNPQTGATIHISASKVPAFKAGKLLKESVN 90
>gi|22124937|ref|NP_668360.1| transcriptional regulator HU subunit beta [Yersinia pestis KIM
10]
gi|45440626|ref|NP_992165.1| transcriptional regulator HU subunit beta [Yersinia pestis biovar
Microtus str. 91001]
gi|51595312|ref|YP_069503.1| transcriptional regulator HU subunit beta [Yersinia
pseudotuberculosis IP 32953]
gi|108808640|ref|YP_652556.1| transcriptional regulator HU subunit beta [Yersinia pestis
Antiqua]
gi|108811101|ref|YP_646868.1| transcriptional regulator HU subunit beta [Yersinia pestis
Nepal516]
gi|145600049|ref|YP_001164125.1| transcriptional regulator HU subunit beta [Yersinia pestis
Pestoides F]
gi|149365000|ref|ZP_01887035.1| DNA-binding protein HU-beta [Yersinia pestis CA88-4125]
gi|153946890|ref|YP_001402049.1| transcriptional regulator HU subunit beta [Yersinia
pseudotuberculosis IP 31758]
gi|162421829|ref|YP_001607417.1| transcriptional regulator HU subunit beta [Yersinia pestis
Angola]
gi|165926604|ref|ZP_02222436.1| DNA-binding protein HU-beta [Yersinia pestis biovar Orientalis
str. F1991016]
gi|165935858|ref|ZP_02224428.1| DNA-binding protein HU-beta [Yersinia pestis biovar Orientalis
str. IP275]
gi|166011019|ref|ZP_02231917.1| DNA-binding protein HU-beta [Yersinia pestis biovar Antiqua str.
E1979001]
gi|166212951|ref|ZP_02238986.1| DNA-binding protein HU-beta [Yersinia pestis biovar Antiqua str.
B42003004]
gi|167398669|ref|ZP_02304193.1| DNA-binding protein HU-beta [Yersinia pestis biovar Antiqua str.
UG05-0454]
gi|167421618|ref|ZP_02313371.1| DNA-binding protein HU-beta [Yersinia pestis biovar Orientalis
str. MG05-1020]
gi|167423381|ref|ZP_02315134.1| DNA-binding protein HU-beta [Yersinia pestis biovar Mediaevalis
str. K1973002]
gi|170025448|ref|YP_001721953.1| transcriptional regulator HU subunit beta [Yersinia
pseudotuberculosis YPIII]
gi|186894329|ref|YP_001871441.1| transcriptional regulator HU subunit beta [Yersinia
pseudotuberculosis PB1/+]
gi|218930184|ref|YP_002348059.1| transcriptional regulator HU subunit beta [Yersinia pestis CO92]
gi|229838758|ref|ZP_04458917.1| HU, DNA-binding transcriptional regulator, beta subunit [Yersinia
pestis biovar Orientalis str. PEXU2]
gi|229896088|ref|ZP_04511258.1| HU, DNA-binding transcriptional regulator, beta subunit [Yersinia
pestis Pestoides A]
gi|229899326|ref|ZP_04514469.1| HU, DNA-binding transcriptional regulator, beta subunit [Yersinia
pestis biovar Orientalis str. India 195]
gi|229901330|ref|ZP_04516452.1| HU, DNA-binding transcriptional regulator, beta subunit [Yersinia
pestis Nepal516]
gi|270489516|ref|ZP_06206590.1| DNA-binding protein HU [Yersinia pestis KIM D27]
gi|21957776|gb|AAM84611.1|AE013706_6 DNA-binding protein HU-beta, NS1 (HU-1) [Yersinia pestis KIM 10]
gi|45435483|gb|AAS61042.1| DNA-binding protein HU-beta [Yersinia pestis biovar Microtus str.
91001]
gi|51588594|emb|CAH20202.1| DNA-binding protein HU-beta, NS1 (HU-1) [Yersinia
pseudotuberculosis IP 32953]
gi|108774749|gb|ABG17268.1| bacterial nucleoid protein HU beta subunit [Yersinia pestis
Nepal516]
gi|108780553|gb|ABG14611.1| bacterial nucleoid protein HU beta subunit [Yersinia pestis
Antiqua]
gi|115348795|emb|CAL21749.1| DNA-binding protein HU-beta [Yersinia pestis CO92]
gi|145211745|gb|ABP41152.1| bacterial nucleoid protein HU beta subunit [Yersinia pestis
Pestoides F]
gi|149291413|gb|EDM41487.1| DNA-binding protein HU-beta [Yersinia pestis CA88-4125]
gi|152958385|gb|ABS45846.1| DNA-binding protein HU-beta [Yersinia pseudotuberculosis IP
31758]
gi|162354644|gb|ABX88592.1| DNA-binding protein HU-beta [Yersinia pestis Angola]
gi|165916003|gb|EDR34610.1| DNA-binding protein HU-beta [Yersinia pestis biovar Orientalis
str. IP275]
gi|165921532|gb|EDR38729.1| DNA-binding protein HU-beta [Yersinia pestis biovar Orientalis
str. F1991016]
gi|165990019|gb|EDR42320.1| DNA-binding protein HU-beta [Yersinia pestis biovar Antiqua str.
E1979001]
gi|166205738|gb|EDR50218.1| DNA-binding protein HU-beta [Yersinia pestis biovar Antiqua str.
B42003004]
gi|166960537|gb|EDR56558.1| DNA-binding protein HU-beta [Yersinia pestis biovar Orientalis
str. MG05-1020]
gi|167051173|gb|EDR62581.1| DNA-binding protein HU-beta [Yersinia pestis biovar Antiqua str.
UG05-0454]
gi|167057551|gb|EDR67297.1| DNA-binding protein HU-beta [Yersinia pestis biovar Mediaevalis
str. K1973002]
gi|169751982|gb|ACA69500.1| histone family protein DNA-binding protein [Yersinia
pseudotuberculosis YPIII]
gi|186697355|gb|ACC87984.1| histone family protein DNA-binding protein [Yersinia
pseudotuberculosis PB1/+]
gi|229681259|gb|EEO77353.1| HU, DNA-binding transcriptional regulator, beta subunit [Yersinia
pestis Nepal516]
gi|229687728|gb|EEO79801.1| HU, DNA-binding transcriptional regulator, beta subunit [Yersinia
pestis biovar Orientalis str. India 195]
gi|229695124|gb|EEO85171.1| HU, DNA-binding transcriptional regulator, beta subunit [Yersinia
pestis biovar Orientalis str. PEXU2]
gi|229701011|gb|EEO89040.1| HU, DNA-binding transcriptional regulator, beta subunit [Yersinia
pestis Pestoides A]
gi|270338020|gb|EFA48797.1| DNA-binding protein HU [Yersinia pestis KIM D27]
gi|320016340|gb|ADV99911.1| HU, DNA-binding transcriptional regulator, beta subunit [Yersinia
pestis biovar Medievalis str. Harbin 35]
Length = 90
Score = 105 bits (263), Expect = 2e-21, Method: Composition-based stats.
Identities = 35/91 (38%), Positives = 53/91 (58%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI IA ++ + ++ ++ +T++L G V + GFG+F+VR+R+AR
Sbjct: 1 MNKSQLIDKIAA-GADISKAAAGRALDAIITSVTESLKEGDDVALVGFGTFAVRERSART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P K IS+ VP FRAGK LK+ +N
Sbjct: 60 GRNPQTGKEISIPAAKVPGFRAGKGLKDAVN 90
>gi|312113689|ref|YP_004011285.1| integration host factor subunit beta [Rhodomicrobium vannielii
ATCC 17100]
gi|311218818|gb|ADP70186.1| integration host factor, beta subunit [Rhodomicrobium vannielii
ATCC 17100]
Length = 110
Score = 105 bits (263), Expect = 2e-21, Method: Composition-based stats.
Identities = 52/95 (54%), Positives = 68/95 (71%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
MIKS LI +A NP L ++DVEKIVN++ EE+T AL G RVE+RGFG+FSV+ R AR+
Sbjct: 1 MIKSELIEKLAATNPHLMHRDVEKIVNVIFEEITGALTKGDRVELRGFGAFSVKHRPARV 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDS 95
R P +SV EK VP+F+ GK L+ RLN P++
Sbjct: 61 GRNPRTGDQVSVPEKFVPYFKTGKELRIRLNPPEA 95
>gi|170740732|ref|YP_001769387.1| integration host factor subunit beta [Methylobacterium sp. 4-46]
gi|168195006|gb|ACA16953.1| integration host factor, beta subunit [Methylobacterium sp. 4-46]
Length = 106
Score = 105 bits (263), Expect = 2e-21, Method: Composition-based stats.
Identities = 46/92 (50%), Positives = 64/92 (69%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
MIKS L+ IA++NP L +DVE IVN +L+ + ALA G RVE+RGFG+FSV++R AR
Sbjct: 1 MIKSELVLKIAEQNPHLYQRDVESIVNAILDTIADALARGDRVELRGFGAFSVKRREARR 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P ++V EK +P F+ GK ++ RLN+
Sbjct: 61 GRNPRTGAAVAVAEKAIPVFKTGKEMRLRLNA 92
>gi|119774872|ref|YP_927612.1| integration host factor subunit beta [Shewanella amazonensis
SB2B]
gi|166975887|sp|A1S6D6|IHFB_SHEAM RecName: Full=Integration host factor subunit beta;
Short=IHF-beta
gi|119767372|gb|ABL99942.1| integration host factor, beta subunit [Shewanella amazonensis
SB2B]
Length = 95
Score = 105 bits (263), Expect = 2e-21, Method: Composition-based stats.
Identities = 40/92 (43%), Positives = 58/92 (63%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI +A + +L+ ++VE V +LE+M L +G R+EIRGFGSFS+ RA R
Sbjct: 1 MTKSELIEKLATRQSQLSAKEVESAVKEMLEQMATTLESGERIEIRGFGSFSLHYRAPRT 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P + +E K VP F+ GK L+ER+++
Sbjct: 61 GRNPKTGTSVELEGKYVPHFKPGKELRERVDA 92
>gi|331005948|ref|ZP_08329294.1| Integration host factor beta subunit [gamma proteobacterium
IMCC1989]
gi|330420243|gb|EGG94563.1| Integration host factor beta subunit [gamma proteobacterium
IMCC1989]
Length = 102
Score = 105 bits (263), Expect = 2e-21, Method: Composition-based stats.
Identities = 38/92 (41%), Positives = 59/92 (64%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI + +L+ +DVE V +LE M+Q LA+G R+E+RGFGSFS+ R R+
Sbjct: 1 MTKSELIERMTDNQEQLSVKDVELAVKSMLEHMSQVLASGERIEVRGFGSFSLHYREPRM 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P +++ ++ K VP F+ GK +++R+N
Sbjct: 61 GRNPKTGEMVELKGKYVPHFKPGKEMRDRVNE 92
>gi|90021258|ref|YP_527085.1| nucleoid protein HU subunit beta [Saccharophagus degradans 2-40]
gi|89950858|gb|ABD80873.1| bacterial nucleoid protein HU beta subunit [Saccharophagus
degradans 2-40]
Length = 90
Score = 105 bits (263), Expect = 2e-21, Method: Composition-based stats.
Identities = 32/91 (35%), Positives = 51/91 (56%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI IA + ++ + ++ + E + +AL NG +V + GFG+F V++RAAR
Sbjct: 1 MNKSELIEAIAA-SADISKAAAGRALDAVTESIGEALKNGDQVALVGFGTFLVKERAART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P I + +P F+ GK LK+ +N
Sbjct: 60 GRNPQTGAPIEIAAAKIPSFKPGKALKDAVN 90
>gi|87121305|ref|ZP_01077195.1| DNA-binding protein HU-beta [Marinomonas sp. MED121]
gi|86163462|gb|EAQ64737.1| DNA-binding protein HU-beta [Marinomonas sp. MED121]
Length = 90
Score = 105 bits (263), Expect = 2e-21, Method: Composition-based stats.
Identities = 37/91 (40%), Positives = 54/91 (59%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI IA + L+ ++ LE +T ALA G +V + GFG+F+V+ RAAR
Sbjct: 1 MNKSELIDAIAA-SADLSKAAAGNALDATLEAITGALAKGDQVTLVGFGTFAVKDRAART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + I+++ VP F+AGK LK+ +N
Sbjct: 60 GRNPQTGEEIAIKAAKVPGFKAGKGLKDSVN 90
>gi|153835692|ref|ZP_01988359.1| DNA-binding protein HU-beta [Vibrio harveyi HY01]
gi|269961042|ref|ZP_06175411.1| DNA-binding protein HU-beta [Vibrio harveyi 1DA3]
gi|148867673|gb|EDL66949.1| DNA-binding protein HU-beta [Vibrio harveyi HY01]
gi|269834261|gb|EEZ88351.1| DNA-binding protein HU-beta [Vibrio harveyi 1DA3]
Length = 90
Score = 105 bits (263), Expect = 2e-21, Method: Composition-based stats.
Identities = 34/91 (37%), Positives = 53/91 (58%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ L+ IA+ N ++ + ++ +E ++ L +G +V + GFG+FSVR RAAR
Sbjct: 1 MNKTQLVEQIAE-NADISKASAGRALDAFIEAVSGTLQSGDQVALVGFGTFSVRTRAART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + I + E VP F+AGK LK+ N
Sbjct: 60 GRNPKTGEEIQIAEAKVPSFKAGKALKDACN 90
>gi|28897694|ref|NP_797299.1| DNA-binding protein HU-beta [Vibrio parahaemolyticus RIMD
2210633]
gi|91228614|ref|ZP_01262532.1| DNA-binding protein HU-beta [Vibrio alginolyticus 12G01]
gi|260366278|ref|ZP_05778734.1| DNA-binding protein HU-beta [Vibrio parahaemolyticus K5030]
gi|260898293|ref|ZP_05906789.1| DNA-binding protein HU-beta [Vibrio parahaemolyticus Peru-466]
gi|260901514|ref|ZP_05909909.1| DNA-binding protein HU-beta [Vibrio parahaemolyticus AQ4037]
gi|262394812|ref|YP_003286666.1| DNA-binding protein HU-beta [Vibrio sp. Ex25]
gi|269965577|ref|ZP_06179691.1| DNA-binding protein HU-beta [Vibrio alginolyticus 40B]
gi|28805907|dbj|BAC59183.1| DNA-binding protein HU-beta [Vibrio parahaemolyticus RIMD
2210633]
gi|91187846|gb|EAS74160.1| DNA-binding protein HU-beta [Vibrio alginolyticus 12G01]
gi|262338406|gb|ACY52201.1| DNA-binding protein HU-beta [Vibrio sp. Ex25]
gi|269829802|gb|EEZ84037.1| DNA-binding protein HU-beta [Vibrio alginolyticus 40B]
gi|308088436|gb|EFO38131.1| DNA-binding protein HU-beta [Vibrio parahaemolyticus Peru-466]
gi|308110870|gb|EFO48410.1| DNA-binding protein HU-beta [Vibrio parahaemolyticus AQ4037]
gi|308114045|gb|EFO51585.1| DNA-binding protein HU-beta [Vibrio parahaemolyticus K5030]
gi|328473323|gb|EGF44171.1| DNA-binding protein HU-beta [Vibrio parahaemolyticus 10329]
Length = 90
Score = 105 bits (263), Expect = 2e-21, Method: Composition-based stats.
Identities = 34/91 (37%), Positives = 53/91 (58%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ L+ IA+ N ++ + ++ +E ++ L +G +V + GFG+FSVR RAAR
Sbjct: 1 MNKTQLVEQIAE-NADISKASAGRALDAFIEAVSGTLQSGDQVALVGFGTFSVRTRAART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + I + E VP F+AGK LK+ N
Sbjct: 60 GRNPKTGEEIQIAEAKVPAFKAGKALKDACN 90
>gi|134297994|ref|YP_001111490.1| histone family protein DNA-binding protein [Desulfotomaculum
reducens MI-1]
gi|134050694|gb|ABO48665.1| bacterial nucleoid protein Hbs [Desulfotomaculum reducens MI-1]
Length = 95
Score = 105 bits (263), Expect = 2e-21, Method: Composition-based stats.
Identities = 34/90 (37%), Positives = 54/90 (60%), Gaps = 1/90 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI +A+K +L+ +D EK V+ +L + +ALA G ++++ GFG+F + R AR
Sbjct: 1 MNKAELISAVAEKT-ELSKKDAEKAVSAVLGSIEEALAKGDKIQLVGFGTFESKPRKARE 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P I + VP F+AGK LK+ +
Sbjct: 60 GRNPQTGDTIQIPATRVPVFKAGKVLKDAV 89
>gi|78188340|ref|YP_378678.1| histone-like DNA-binding protein [Chlorobium chlorochromatii
CaD3]
gi|78170539|gb|ABB27635.1| Histone-like DNA-binding protein [Chlorobium chlorochromatii
CaD3]
Length = 91
Score = 105 bits (263), Expect = 2e-21, Method: Composition-based stats.
Identities = 33/90 (36%), Positives = 48/90 (53%), Gaps = 1/90 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ L+ IA K L D E+ + ++ MT +L G V + GFG+FSV RA R
Sbjct: 1 MSKAELVEKIA-KQADLTKADAERALTAFVDVMTASLKAGDDVALVGFGTFSVGDRAERQ 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P + I++ K V F+ GK LK+ +
Sbjct: 60 GRNPQTGETITIAAKKVVKFKPGKALKDEI 89
>gi|307544939|ref|YP_003897418.1| DNA-binding protein HU-beta [Halomonas elongata DSM 2581]
gi|307216963|emb|CBV42233.1| K03530 DNA-binding protein HU-beta [Halomonas elongata DSM 2581]
Length = 90
Score = 105 bits (262), Expect = 2e-21, Method: Composition-based stats.
Identities = 31/91 (34%), Positives = 51/91 (56%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI IA + + + ++ +++ + +L G V + GFG+F+V++RAAR
Sbjct: 1 MNKSELIEAIAA-SADIPKAAASRALDAMVDAVADSLKKGDSVSLVGFGTFTVKERAART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + I + VP F+AGK LK+ +N
Sbjct: 60 GRNPQTGEPIQISAAKVPSFKAGKALKDSVN 90
>gi|294140846|ref|YP_003556824.1| integration host factor subunit beta [Shewanella violacea DSS12]
gi|293327315|dbj|BAJ02046.1| integration host factor, beta subunit [Shewanella violacea DSS12]
Length = 95
Score = 105 bits (262), Expect = 2e-21, Method: Composition-based stats.
Identities = 39/95 (41%), Positives = 61/95 (64%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI +A + +L+ ++VE + +LE+M Q L +G R+EIRGFGSFS+ RA R
Sbjct: 1 MTKSELIEKLASRQSQLSAKEVESAIKEMLEQMAQTLESGDRIEIRGFGSFSLHFRAPRT 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDS 95
R P + ++ K VP F+ GK L+ER+++ ++
Sbjct: 61 GRNPKTGTSVQLDGKYVPHFKPGKELRERVDAINA 95
>gi|242240289|ref|YP_002988470.1| transcriptional regulator HU subunit beta [Dickeya dadantii
Ech703]
gi|242132346|gb|ACS86648.1| histone family protein DNA-binding protein [Dickeya dadantii
Ech703]
Length = 90
Score = 105 bits (262), Expect = 2e-21, Method: Composition-based stats.
Identities = 35/91 (38%), Positives = 55/91 (60%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI IA + ++ ++++ ++ +T++L G V + GFG+F+VR+R+AR
Sbjct: 1 MNKSQLIDKIAA-DADISKAAAGRVLDAIIGSVTESLKAGDDVALVGFGTFAVRERSART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P K IS+ VP FRAGK LK+ +N
Sbjct: 60 GRNPQTGKEISIPAAKVPGFRAGKALKDAVN 90
>gi|51894365|ref|YP_077056.1| non-specific DNA-binding protein [Symbiobacterium thermophilum
IAM 14863]
gi|51858054|dbj|BAD42212.1| non-specific DNA-binding protein [Symbiobacterium thermophilum
IAM 14863]
Length = 89
Score = 105 bits (262), Expect = 2e-21, Method: Composition-based stats.
Identities = 37/90 (41%), Positives = 54/90 (60%), Gaps = 1/90 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K L+ ++A+K+ L +D EK +N ++E + +AL G +V + GFG+F VR RAAR
Sbjct: 1 MNKQDLVASVAEKS-GLTKKDAEKALNAVVESIKEALKKGDKVSLVGFGTFEVRNRAARS 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P + I + VP FR GK LKE +
Sbjct: 60 GRNPQTGEPIKIPAGKVPAFRPGKELKESV 89
>gi|256823167|ref|YP_003147130.1| histone family protein DNA-binding protein [Kangiella koreensis
DSM 16069]
gi|256796706|gb|ACV27362.1| histone family protein DNA-binding protein [Kangiella koreensis
DSM 16069]
Length = 90
Score = 105 bits (262), Expect = 2e-21, Method: Composition-based stats.
Identities = 33/91 (36%), Positives = 53/91 (58%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI IA ++ + ++ +L +T +L G +V + GFG+F+V++RAAR
Sbjct: 1 MNKSELIDAIAA-GADISKAAAGRALDSMLGAITDSLQKGEQVSLVGFGTFAVKERAART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + I ++ VP F+AGK LK+ +N
Sbjct: 60 GRNPKTGETIQIKAAKVPGFKAGKALKDAVN 90
>gi|94971131|ref|YP_593179.1| nucleoid protein Hbs [Candidatus Koribacter versatilis Ellin345]
gi|94553181|gb|ABF43105.1| bacterial nucleoid protein Hbs [Candidatus Koribacter versatilis
Ellin345]
Length = 110
Score = 105 bits (262), Expect = 2e-21, Method: Composition-based stats.
Identities = 33/91 (36%), Positives = 52/91 (57%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI ++ + +L +D E IV + + + +L G ++EIRGFGSF R+R R+
Sbjct: 1 MTKADLIDEVS-RLAELTRKDSEVIVETIFDSIVHSLRAGDKIEIRGFGSFRTRQRKPRV 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + V K +PFF+ K LK+ +N
Sbjct: 60 GRNPKTGDRVEVPAKKIPFFKPSKELKDMVN 90
>gi|218768639|ref|YP_002343151.1| DNA-binding protein HU-beta [Neisseria meningitidis Z2491]
gi|304386918|ref|ZP_07369179.1| DNA-binding protein HU-beta [Neisseria meningitidis ATCC 13091]
gi|14194646|sp|Q9JR30|DBHC_NEIMA RecName: Full=DNA-binding protein HU-beta 2
gi|6900359|emb|CAB71971.1| putative DNA-binding protein [Neisseria meningitidis]
gi|121052647|emb|CAM08987.1| DNA-binding protein HU-beta [Neisseria meningitidis Z2491]
gi|304339023|gb|EFM05116.1| DNA-binding protein HU-beta [Neisseria meningitidis ATCC 13091]
gi|319410872|emb|CBY91264.1| DNA-binding protein HU-B [Neisseria meningitidis WUE 2594]
Length = 91
Score = 105 bits (262), Expect = 2e-21, Method: Composition-based stats.
Identities = 31/91 (34%), Positives = 50/91 (54%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI IA + +L+ + + VN + +TQ L +G V + GFG+F + A R
Sbjct: 1 MNKSELIQAIADE-AELSKRAAAEFVNAFVSVVTQELKDGNDVTLVGFGTFHAAQSAERQ 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + +++ + P FR+GK LK+ +N
Sbjct: 60 GRNPKTGEPLTIAARKTPKFRSGKALKDAVN 90
>gi|295696966|ref|YP_003590204.1| histone family protein DNA-binding protein [Bacillus tusciae DSM
2912]
gi|295412568|gb|ADG07060.1| histone family protein DNA-binding protein [Bacillus tusciae DSM
2912]
Length = 92
Score = 105 bits (262), Expect = 2e-21, Method: Composition-based stats.
Identities = 35/92 (38%), Positives = 50/92 (54%), Gaps = 1/92 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K LI +A+K+ L + V+ +L+ + +AL G V + GFGSF VR+R+AR
Sbjct: 1 MTKQDLIAKVAEKS-GLTKKAASAAVDAVLDTIQEALQAGESVGLTGFGSFEVRERSART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P + I + P FR GK LKE + S
Sbjct: 60 GRNPQTGETIEIAGGKTPVFRPGKTLKEAVKS 91
>gi|294851552|ref|ZP_06792225.1| integration host factor [Brucella sp. NVSL 07-0026]
gi|294820141|gb|EFG37140.1| integration host factor [Brucella sp. NVSL 07-0026]
Length = 101
Score = 105 bits (262), Expect = 2e-21, Method: Composition-based stats.
Identities = 48/89 (53%), Positives = 62/89 (69%)
Query: 3 KSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLAR 62
KS L+ IA +NP L +DVE IV + +E+T ALA G RVE+RGFG+FSV+ R AR R
Sbjct: 10 KSELVQIIASRNPHLFQRDVENIVGAVFDEITNALAEGNRVELRGFGAFSVKNRPARSGR 69
Query: 63 APLAQKVISVEEKMVPFFRAGKNLKERLN 91
P + + VEEK VPFF+ GK L++RLN
Sbjct: 70 NPRTGETVDVEEKWVPFFKTGKELRDRLN 98
>gi|170748862|ref|YP_001755122.1| integration host factor, beta subunit [Methylobacterium
radiotolerans JCM 2831]
gi|170655384|gb|ACB24439.1| integration host factor, beta subunit [Methylobacterium
radiotolerans JCM 2831]
Length = 103
Score = 105 bits (262), Expect = 2e-21, Method: Composition-based stats.
Identities = 45/92 (48%), Positives = 66/92 (71%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
MIKS L+ IA++NP L +DVE +VN +L+ ++ ALA G RVE+RGFG+FSV++R AR
Sbjct: 1 MIKSELVLKIAEQNPHLYQRDVEILVNAILDTISDALARGDRVELRGFGAFSVKRREARR 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P ++V EK +P F+ GK +++RLN+
Sbjct: 61 GRNPRTGAAVAVSEKAIPVFKTGKEMRQRLNA 92
>gi|110597679|ref|ZP_01385964.1| Histone-like bacterial DNA-binding protein [Chlorobium
ferrooxidans DSM 13031]
gi|110340799|gb|EAT59276.1| Histone-like bacterial DNA-binding protein [Chlorobium
ferrooxidans DSM 13031]
Length = 91
Score = 105 bits (262), Expect = 2e-21, Method: Composition-based stats.
Identities = 32/90 (35%), Positives = 47/90 (52%), Gaps = 1/90 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ L+ IA++ L D E+ VN + +T +L G V + GFG+F+ RA R
Sbjct: 1 MSKAELVEKIAEQ-ANLTKVDAERAVNAFINVVTGSLKQGDDVTLVGFGTFTTGDRAERQ 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P I++ K V F+ GK LKE +
Sbjct: 60 GRNPQTGAAITISAKKVVKFKPGKALKEEV 89
>gi|319404102|emb|CBI77692.1| DNA-binding protein [Bartonella rochalimae ATCC BAA-1498]
Length = 92
Score = 105 bits (262), Expect = 2e-21, Method: Composition-based stats.
Identities = 37/93 (39%), Positives = 54/93 (58%), Gaps = 1/93 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS L+ ++A+K ++ V+ + +T+ALA+GG V I GFGSF V RAA
Sbjct: 1 MNKSELVNSVAEK-AGISKAQAGASVDAFIASVTEALASGGDVRIPGFGSFEVSHRAATK 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSP 93
R P I++ + VP F AGK+LKE +N+
Sbjct: 60 GRNPSTGAEITIPARSVPKFSAGKSLKEAVNNK 92
>gi|238754238|ref|ZP_04615595.1| DNA-binding protein HU-beta [Yersinia ruckeri ATCC 29473]
gi|238707485|gb|EEP99845.1| DNA-binding protein HU-beta [Yersinia ruckeri ATCC 29473]
Length = 90
Score = 105 bits (262), Expect = 3e-21, Method: Composition-based stats.
Identities = 35/91 (38%), Positives = 53/91 (58%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI IA ++ + ++ ++ +T++L G V + GFG+F+VR+R+AR
Sbjct: 1 MNKSQLIDKIAA-GADISKAAAGRALDAIIASVTESLKAGDDVALVGFGTFAVRERSART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P K IS+ VP FRAGK LK+ +N
Sbjct: 60 GRNPQTGKEISIPAAKVPGFRAGKGLKDAVN 90
>gi|238751009|ref|ZP_04612505.1| DNA-binding protein HU [Yersinia rohdei ATCC 43380]
gi|238710699|gb|EEQ02921.1| DNA-binding protein HU [Yersinia rohdei ATCC 43380]
Length = 90
Score = 105 bits (262), Expect = 3e-21, Method: Composition-based stats.
Identities = 35/91 (38%), Positives = 53/91 (58%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI IA ++ + ++ ++ +T++L G V + GFG+F+VR+R+AR
Sbjct: 1 MNKSQLIDKIAA-GADISKAAAGRALDAIIASVTESLKEGDEVALVGFGTFAVRERSART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P K IS+ VP FRAGK LK+ +N
Sbjct: 60 GRNPQTGKEISIPAAKVPGFRAGKGLKDAVN 90
>gi|291434889|ref|YP_003518271.1| DNA-binding protein Hu-beta [Cupriavidus metallidurans CH34]
gi|288259483|gb|ADC45367.1| DNA-binding protein Hu-beta (bacterial histone-like DNA-binding
protein) [Cupriavidus metallidurans CH34]
Length = 144
Score = 105 bits (262), Expect = 3e-21, Method: Composition-based stats.
Identities = 30/91 (32%), Positives = 49/91 (53%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI +A+ L E+++N L+ + +A+ G + + GFG+FS +R R+
Sbjct: 1 MTKSELIDAVARGVDGLTKTKAEQVLNATLDAIVEAVGRGETLSLIGFGTFSKGERGERM 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
AR P + I VE F+AG+ K+ +N
Sbjct: 61 ARNPRTGEEIRVEAAKTVKFKAGQRFKDAVN 91
>gi|30019658|ref|NP_831289.1| DNA-binding protein HU [Bacillus cereus ATCC 14579]
gi|75764066|ref|ZP_00743668.1| DNA-binding protein HU [Bacillus thuringiensis serovar israelensis
ATCC 35646]
gi|29895202|gb|AAP08490.1| DNA-binding protein HU [Bacillus cereus ATCC 14579]
gi|74488445|gb|EAO52059.1| DNA-binding protein HU [Bacillus thuringiensis serovar israelensis
ATCC 35646]
Length = 114
Score = 105 bits (262), Expect = 3e-21, Method: Composition-based stats.
Identities = 33/91 (36%), Positives = 54/91 (59%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI +A+ + L+ +D K V+ + + + +AL G +V++ GFG+F VR+RAAR
Sbjct: 25 MNKTDLINAVAEASS-LSKKDATKAVDAVFDSILEALKQGDKVQLIGFGNFEVRERAARK 83
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + I + VP F+ GK LK+ +
Sbjct: 84 GRNPQTGEEIEIAASKVPAFKPGKALKDAVK 114
>gi|21673001|ref|NP_661066.1| DNA-binding protein HU-beta [Chlorobium tepidum TLS]
gi|21646065|gb|AAM71408.1| DNA-binding protein HU-beta [Chlorobium tepidum TLS]
Length = 91
Score = 105 bits (262), Expect = 3e-21, Method: Composition-based stats.
Identities = 33/90 (36%), Positives = 47/90 (52%), Gaps = 1/90 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ L IA++ L D E+ VN + +T L +G V + GFG+F+ RA R
Sbjct: 1 MSKAELAEKIAEQT-GLTKADAERAVNAFINVVTSTLKSGDDVTLVGFGTFTTGDRAERQ 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P K I++ K V F+ GK LKE +
Sbjct: 60 GRNPQTGKTITIAAKKVVKFKPGKALKEEV 89
>gi|319405545|emb|CBI79164.1| DNA-binding protein [Bartonella sp. AR 15-3]
Length = 92
Score = 105 bits (262), Expect = 3e-21, Method: Composition-based stats.
Identities = 37/93 (39%), Positives = 54/93 (58%), Gaps = 1/93 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS L+ +IA+K ++ V+ + +T+ALA+GG V + GFGSF V RAA
Sbjct: 1 MNKSELVNSIAEK-AGISKAQAGSSVDAFIASVTEALASGGDVRLPGFGSFEVSHRAATK 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSP 93
R P I++ + VP F AGK+LKE +N+
Sbjct: 60 GRNPSTGAEITIPARSVPKFSAGKSLKEAVNNK 92
>gi|149928275|ref|ZP_01916518.1| Integration host factor, beta subunit [Limnobacter sp. MED105]
gi|149823004|gb|EDM82246.1| Integration host factor, beta subunit [Limnobacter sp. MED105]
Length = 98
Score = 105 bits (262), Expect = 3e-21, Method: Composition-based stats.
Identities = 45/98 (45%), Positives = 62/98 (63%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI + K+ PKL +D + V +L+ MTQALA G R+EIRGFGSFS+ +R R+
Sbjct: 1 MTKSELINQLVKRFPKLPVRDTDFAVKSILDSMTQALAEGQRIEIRGFGSFSLTRRPQRV 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDSTLS 98
R P + + + V EK VP F+ GK L+ER++ S
Sbjct: 61 GRNPKSGEQVVVPEKRVPHFKPGKELRERVDLYSKKES 98
>gi|312882504|ref|ZP_07742245.1| DNA-binding protein HU-beta [Vibrio caribbenthicus ATCC BAA-2122]
gi|309369904|gb|EFP97415.1| DNA-binding protein HU-beta [Vibrio caribbenthicus ATCC BAA-2122]
Length = 90
Score = 105 bits (262), Expect = 3e-21, Method: Composition-based stats.
Identities = 33/91 (36%), Positives = 52/91 (57%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ L+ IA+ + L+ + ++ ++ + L +G +V + GFG+FSVR RAAR
Sbjct: 1 MNKTQLVEKIAE-SADLSKASAGRALDAFIDAVGDTLQSGDQVALVGFGTFSVRTRAART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + I + E VP F+AGK LK+ N
Sbjct: 60 GRNPKTGEEIQIAEAKVPSFKAGKALKDSCN 90
>gi|330817268|ref|YP_004360973.1| Probable dna-binding protein hu-beta [Burkholderia gladioli BSR3]
gi|327369661|gb|AEA61017.1| Probable dna-binding protein hu-beta [Burkholderia gladioli BSR3]
Length = 90
Score = 105 bits (262), Expect = 3e-21, Method: Composition-based stats.
Identities = 36/91 (39%), Positives = 52/91 (57%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI IA++ L+ + ++ L+ + QAL +GG V + GFG+F V +R AR
Sbjct: 1 MNKTDLIDHIARE-ADLSKASAGRALDALIAGVVQALESGGSVTLAGFGTFEVGERIARN 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + I +E V FRAGK LK+ LN
Sbjct: 60 GRNPQTGETIRIEAARVAKFRAGKALKDALN 90
>gi|284007585|emb|CBA73152.1| integration host factor beta-subunit [Arsenophonus nasoniae]
Length = 106
Score = 105 bits (262), Expect = 3e-21, Method: Composition-based stats.
Identities = 35/91 (38%), Positives = 54/91 (59%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M +S LI + + + + +E+ V +L+ M LA G R+EIRGFGSFS+ RA R+
Sbjct: 13 MTRSELIERLINQLAHIPAKLIEEAVKEMLDHMAITLAKGERIEIRGFGSFSLHYRAPRI 72
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + ++ K VP F+ GK L++R+N
Sbjct: 73 GRNPKTGDKVDLKGKHVPHFKPGKELRDRVN 103
>gi|238026976|ref|YP_002911207.1| putative dna-binding protein hu-beta [Burkholderia glumae BGR1]
gi|237876170|gb|ACR28503.1| Probable dna-binding protein hu-beta [Burkholderia glumae BGR1]
Length = 90
Score = 105 bits (262), Expect = 3e-21, Method: Composition-based stats.
Identities = 36/91 (39%), Positives = 52/91 (57%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI IA++ L+ + ++ L+ + QAL +GG V + GFG+F V +R AR
Sbjct: 1 MNKTDLIDHIARE-ADLSKASAGRALDALIGGVMQALESGGSVTLAGFGTFEVGERIARN 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + I +E V FRAGK LK+ LN
Sbjct: 60 GRNPQTGETIRIEAARVAKFRAGKALKDALN 90
>gi|77165249|ref|YP_343774.1| histone-like DNA-binding protein [Nitrosococcus oceani ATCC
19707]
gi|254433630|ref|ZP_05047138.1| DNA-binding protein HU [Nitrosococcus oceani AFC27]
gi|300114007|ref|YP_003760582.1| histone family protein DNA-binding protein [Nitrosococcus
watsonii C-113]
gi|76883563|gb|ABA58244.1| Histone-like DNA-binding protein [Nitrosococcus oceani ATCC
19707]
gi|207089963|gb|EDZ67234.1| DNA-binding protein HU [Nitrosococcus oceani AFC27]
gi|299539944|gb|ADJ28261.1| histone family protein DNA-binding protein [Nitrosococcus
watsonii C-113]
Length = 90
Score = 104 bits (261), Expect = 3e-21, Method: Composition-based stats.
Identities = 37/91 (40%), Positives = 53/91 (58%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI ++A L + V+ ++E +T AL G +V I GFG+FSVR RAAR
Sbjct: 1 MNKSELIESVADA-GNLTKAAAARAVDSVIEAVTDALRRGDQVTIVGFGTFSVRDRAART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + I ++ +P F+AGK LK+ +N
Sbjct: 60 GRNPQTGEEIKIKASKMPSFKAGKALKDAVN 90
>gi|237749146|ref|ZP_04579626.1| integration host factor subunit beta [Oxalobacter formigenes
OXCC13]
gi|229380508|gb|EEO30599.1| integration host factor subunit beta [Oxalobacter formigenes
OXCC13]
Length = 97
Score = 104 bits (261), Expect = 3e-21, Method: Composition-based stats.
Identities = 42/91 (46%), Positives = 61/91 (67%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI ++A P+L +D E V +L+ M+ ALANG R+EIRGFGSF++ R R+
Sbjct: 1 MTKSELIVSLAGSYPQLLAKDAELTVKTILDAMSDALANGQRIEIRGFGSFALSVRPPRV 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + + + VEEK VP F+ GK L++R++
Sbjct: 61 GRNPRSGEKVMVEEKRVPHFKPGKELRQRVD 91
>gi|269102132|ref|ZP_06154829.1| DNA-binding protein HU-beta [Photobacterium damselae subsp.
damselae CIP 102761]
gi|268162030|gb|EEZ40526.1| DNA-binding protein HU-beta [Photobacterium damselae subsp.
damselae CIP 102761]
Length = 90
Score = 104 bits (261), Expect = 3e-21, Method: Composition-based stats.
Identities = 33/91 (36%), Positives = 53/91 (58%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ L+ IA+ N ++ + ++ +E ++ L +G +V + GFG+FSVR+RAAR
Sbjct: 1 MNKTQLVDKIAE-NADISKASAGRALDAFIEAVSDTLKSGDQVALVGFGTFSVRERAART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P I + VP F+AGK LK+ +N
Sbjct: 60 GRNPQTGAEIQIAAAKVPGFKAGKALKDSVN 90
>gi|291326896|ref|ZP_06126254.2| DNA-binding protein HU-beta [Providencia rettgeri DSM 1131]
gi|291312425|gb|EFE52878.1| DNA-binding protein HU-beta [Providencia rettgeri DSM 1131]
Length = 96
Score = 104 bits (261), Expect = 3e-21, Method: Composition-based stats.
Identities = 35/91 (38%), Positives = 52/91 (57%), Gaps = 1/91 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ LI IA + ++ ++V+ + +T +L+ G V + GFG+FSVR+RAAR
Sbjct: 7 NKAQLIDQIA-SDANISKAAAGRVVDAFVATVTGSLSKGDDVALVGFGTFSVRERAARTG 65
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P K I + VP FR GK LK+ +NS
Sbjct: 66 RNPQTGKEIKIAAAKVPAFRPGKGLKDAVNS 96
>gi|262372261|ref|ZP_06065540.1| integration host factor, beta subunit [Acinetobacter junii SH205]
gi|262312286|gb|EEY93371.1| integration host factor, beta subunit [Acinetobacter junii SH205]
Length = 90
Score = 104 bits (261), Expect = 3e-21, Method: Composition-based stats.
Identities = 34/90 (37%), Positives = 53/90 (58%), Gaps = 1/90 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI IA+K ++ D K ++ + +T+AL G V + GFG+FSV++RAAR
Sbjct: 1 MNKSELIDAIAEK-GGVSKSDAGKALDATIASITEALKKGDTVTLVGFGTFSVKERAART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P + + ++ VP F+ GK LK+ +
Sbjct: 60 GRNPKTGEELQIKASKVPSFKPGKGLKDSV 89
>gi|270156948|ref|ZP_06185605.1| DNA-binding protein HU-beta [Legionella longbeachae D-4968]
gi|289164628|ref|YP_003454766.1| DNA-binding protein HU-beta [Legionella longbeachae NSW150]
gi|269988973|gb|EEZ95227.1| DNA-binding protein HU-beta [Legionella longbeachae D-4968]
gi|288857801|emb|CBJ11645.1| putative DNA-binding protein HU-beta [Legionella longbeachae
NSW150]
Length = 92
Score = 104 bits (261), Expect = 3e-21, Method: Composition-based stats.
Identities = 37/90 (41%), Positives = 49/90 (54%), Gaps = 1/90 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS L+ IA L D +++ +T AL +G +V I GFGSFS R+AR
Sbjct: 1 MNKSELVDAIA-SGSGLTKADASRVLETFTSTITDALRSGDQVVIPGFGSFSTGNRSART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P KVI ++ V F+AGKNLKE +
Sbjct: 60 GRNPQTGKVIQIKASRVAKFKAGKNLKEAV 89
>gi|92114165|ref|YP_574093.1| histone-like DNA-binding protein [Chromohalobacter salexigens DSM
3043]
gi|91797255|gb|ABE59394.1| histone-like DNA-binding protein [Chromohalobacter salexigens DSM
3043]
Length = 90
Score = 104 bits (261), Expect = 3e-21, Method: Composition-based stats.
Identities = 33/91 (36%), Positives = 52/91 (57%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI IA + + + ++ +++ +T +L G V + GFG+FSV++RAAR
Sbjct: 1 MNKSELIEAIAA-SADIPKAAAGRALDAMVDTVTDSLKKGDSVALVGFGTFSVKERAART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + I + VP F+AGK LK+ +N
Sbjct: 60 GRNPQTGQTIEISAAKVPTFKAGKALKDSVN 90
>gi|127512883|ref|YP_001094080.1| integration host factor, beta subunit [Shewanella loihica PV-4]
gi|166975890|sp|A3QEC3|IHFB_SHELP RecName: Full=Integration host factor subunit beta;
Short=IHF-beta
gi|126638178|gb|ABO23821.1| integration host factor, beta subunit [Shewanella loihica PV-4]
Length = 95
Score = 104 bits (261), Expect = 3e-21, Method: Composition-based stats.
Identities = 40/95 (42%), Positives = 59/95 (62%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI +A + +L+ ++VE + +LE+M L G R+EIRGFGSFS+ RA R
Sbjct: 1 MTKSELIEKLATRQSQLSAKEVESAIKEMLEQMATTLEGGDRIEIRGFGSFSLHYRAPRT 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDS 95
R P + +E K VP F+ GK L+ER+++ +S
Sbjct: 61 GRNPKTGTSVELEGKYVPHFKPGKELRERVDAINS 95
>gi|78222088|ref|YP_383835.1| histone-like DNA-binding protein [Geobacter metallireducens
GS-15]
gi|78193343|gb|ABB31110.1| Histone-like DNA-binding protein [Geobacter metallireducens
GS-15]
Length = 95
Score = 104 bits (261), Expect = 3e-21, Method: Composition-based stats.
Identities = 44/95 (46%), Positives = 64/95 (67%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS L+ +A+KN L +D E IVN++ + ++ AL G +VEIRGFGSF+VR+R AR
Sbjct: 1 MTKSELVEQLAEKNTWLTRKDSEMIVNLVFDSISDALKRGEKVEIRGFGSFTVRERGARE 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDS 95
AR P + V+ + K PFF+ GK L+ER+N+ +
Sbjct: 61 ARNPKSGDVVKIPAKKTPFFKTGKELRERVNTKEE 95
>gi|322834043|ref|YP_004214070.1| histone family protein DNA-binding protein [Rahnella sp. Y9602]
gi|321169244|gb|ADW74943.1| histone family protein DNA-binding protein [Rahnella sp. Y9602]
Length = 91
Score = 104 bits (261), Expect = 3e-21, Method: Composition-based stats.
Identities = 37/91 (40%), Positives = 52/91 (57%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI IA ++ ++++ +L +T L G V + GFG+FSVR+R+AR
Sbjct: 1 MNKSQLIDKIAA-GADISKAAAGRVLDAVLASVTDTLKAGDEVALVGFGTFSVRERSART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P K IS+ VP FRAGK LK+ +N
Sbjct: 60 GRNPQTGKEISIAAAKVPGFRAGKALKDAVN 90
>gi|319407888|emb|CBI81540.1| integration host factor beta chain [Bartonella schoenbuchensis
R1]
Length = 92
Score = 104 bits (261), Expect = 3e-21, Method: Composition-based stats.
Identities = 49/92 (53%), Positives = 67/92 (72%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
MIKS LI IA+ NP L +DVE IVN + EE++ AL NG R+E+RGFG+F+V+ R+AR
Sbjct: 1 MIKSELIQIIARYNPHLLQRDVENIVNAVFEEISTALINGDRIELRGFGAFAVKSRSARN 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P + + VE+K VPFF+ GK+L++RLN
Sbjct: 61 GRNPRTGETVVVEKKWVPFFKTGKDLRDRLNK 92
>gi|237746993|ref|ZP_04577473.1| integration host factor subunit beta [Oxalobacter formigenes
HOxBLS]
gi|229378344|gb|EEO28435.1| integration host factor subunit beta [Oxalobacter formigenes
HOxBLS]
Length = 97
Score = 104 bits (261), Expect = 3e-21, Method: Composition-based stats.
Identities = 41/97 (42%), Positives = 62/97 (63%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI ++A P+L +D E V +L+ M ALA+G R+EIRGFGSF++ R R+
Sbjct: 1 MTKSELIVSLANSYPQLLAKDAELTVKTILDAMADALADGQRIEIRGFGSFALSVRPPRI 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDSTL 97
R P + + + VEEK VP F+ GK L++R+++ +
Sbjct: 61 GRNPRSGEKVMVEEKRVPHFKPGKELRQRVDTAAKSD 97
>gi|148244747|ref|YP_001219441.1| DNA-binding protein HU-beta [Candidatus Vesicomyosocius okutanii
HA]
gi|146326574|dbj|BAF61717.1| DNA-binding protein HU-beta [Candidatus Vesicomyosocius okutanii
HA]
Length = 91
Score = 104 bits (261), Expect = 3e-21, Method: Composition-based stats.
Identities = 38/92 (41%), Positives = 52/92 (56%), Gaps = 1/92 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS L+ I+ + L D + ++ + +T AL +G V I GFGSF VR RAAR
Sbjct: 1 MNKSDLVAVIS-QISNLTKADSARALDAMTGAITSALTSGDNVAITGFGSFVVRDRAART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P + I ++ VP F+AGK LKE +NS
Sbjct: 60 GRNPQTGEAIQIKASKVPAFKAGKLLKESVNS 91
>gi|37527726|ref|NP_931071.1| DNA-binding protein HU-beta, NS1 (HU-1) [Photorhabdus luminescens
subsp. laumondii TTO1]
gi|36787162|emb|CAE16238.1| DNA-binding protein HU-beta, NS1 (HU-1) [Photorhabdus luminescens
subsp. laumondii TTO1]
Length = 91
Score = 104 bits (261), Expect = 3e-21, Method: Composition-based stats.
Identities = 34/91 (37%), Positives = 52/91 (57%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI IA + ++ ++V+ + +T AL +G V + GFG+F+VR+R+AR
Sbjct: 1 MNKSQLIDKIAADS-NISKAAAGRVVDAFISSVTGALKDGDDVALVGFGTFAVRERSART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P K + + VP FR GK LK+ +N
Sbjct: 60 GRNPQTGKELKIAAAKVPAFRPGKGLKDAVN 90
>gi|34498500|ref|NP_902715.1| integration host factor beta-subunit [Chromobacterium violaceum
ATCC 12472]
gi|81711737|sp|Q7NTK9|IHFB_CHRVO RecName: Full=Integration host factor subunit beta;
Short=IHF-beta
gi|34104355|gb|AAQ60714.1| integration host factor beta-subunit [Chromobacterium violaceum
ATCC 12472]
Length = 104
Score = 104 bits (261), Expect = 3e-21, Method: Composition-based stats.
Identities = 43/95 (45%), Positives = 59/95 (62%), Gaps = 4/95 (4%)
Query: 1 MIKSSLI----GTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKR 56
M KS LI +A++N +L Y+D E V +L+ M LA G R+EIRGFGSF + R
Sbjct: 1 MTKSELIARLSERLAERNSQLVYKDAELAVKTILDAMANNLAQGSRIEIRGFGSFDLNYR 60
Query: 57 AARLARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R+ R P + +SV EK VP F+AGK L+ER++
Sbjct: 61 PPRVGRNPKSGASVSVPEKYVPHFKAGKELRERVD 95
>gi|254507806|ref|ZP_05119937.1| DNA-binding protein HU-beta [Vibrio parahaemolyticus 16]
gi|219549331|gb|EED26325.1| DNA-binding protein HU-beta [Vibrio parahaemolyticus 16]
Length = 90
Score = 104 bits (261), Expect = 4e-21, Method: Composition-based stats.
Identities = 36/91 (39%), Positives = 54/91 (59%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ L+ IA+ N L+ + ++ L+E ++ L +G +V + GFG+FSVR RAAR
Sbjct: 1 MNKTQLVEKIAE-NADLSKASAGRALDALIEAVSDTLQSGDQVALVGFGTFSVRTRAART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + I + E VP F+AGK LK+ N
Sbjct: 60 GRNPKTGEEIQIAEAKVPSFKAGKALKDACN 90
>gi|319407115|emb|CBI80752.1| DNA-binding protein [Bartonella sp. 1-1C]
Length = 92
Score = 104 bits (261), Expect = 4e-21, Method: Composition-based stats.
Identities = 37/93 (39%), Positives = 53/93 (56%), Gaps = 1/93 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS L+ ++A+K ++ V+ + +T+ALA+GG V I GFGSF V RAA
Sbjct: 1 MNKSELVNSVAEK-AGISKAQAGASVDAFIASVTEALASGGDVRIPGFGSFEVSHRAATK 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSP 93
R P I + + VP F AGK+LKE +N+
Sbjct: 60 GRNPSTGAEIIIPARSVPKFSAGKSLKEAVNNK 92
>gi|325983542|ref|YP_004295944.1| integration host factor, beta subunit [Nitrosomonas sp. AL212]
gi|325533061|gb|ADZ27782.1| integration host factor, beta subunit [Nitrosomonas sp. AL212]
Length = 96
Score = 104 bits (261), Expect = 4e-21, Method: Composition-based stats.
Identities = 41/96 (42%), Positives = 61/96 (63%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI +A + P+L +D E V +++ M Q+LA+G R+EIRGFGSF + R R+
Sbjct: 1 MTKSELITRLAARFPQLVAKDAELSVKTIIDAMAQSLASGQRIEIRGFGSFDLNYRPPRI 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDST 96
R P + + + V EK VP F+AGK ++ER++ D
Sbjct: 61 GRNPKSGEKVKVPEKYVPHFKAGKEMRERVDYTDKK 96
>gi|261855928|ref|YP_003263211.1| integration host factor subunit beta [Halothiobacillus
neapolitanus c2]
gi|261836397|gb|ACX96164.1| integration host factor, beta subunit [Halothiobacillus
neapolitanus c2]
Length = 101
Score = 104 bits (261), Expect = 4e-21, Method: Composition-based stats.
Identities = 37/93 (39%), Positives = 61/93 (65%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI +A + L+ +D++ V ++L+EM +++ G R+EIRGFGSFS+ R R+
Sbjct: 1 MTKSELIDRLADRQKYLSIRDIDTSVKLMLDEMISSMSRGDRIEIRGFGSFSLNYRKPRI 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSP 93
R P + + ++++ K VP F+ GK L+ER+N
Sbjct: 61 GRNPKSGESVALDSKYVPHFKPGKELRERVNEK 93
>gi|167855104|ref|ZP_02477876.1| hypothetical protein HPS_06734 [Haemophilus parasuis 29755]
gi|219870700|ref|YP_002475075.1| integration host factor subunit beta [Haemophilus parasuis
SH0165]
gi|254803535|sp|B8F475|IHFB_HAEPS RecName: Full=Integration host factor subunit beta;
Short=IHF-beta
gi|167853739|gb|EDS24981.1| hypothetical protein HPS_06734 [Haemophilus parasuis 29755]
gi|219690904|gb|ACL32127.1| integration host factor, beta subunit/bacterial nucleoid
DNA-binding protein [Haemophilus parasuis SH0165]
Length = 93
Score = 104 bits (261), Expect = 4e-21, Method: Composition-based stats.
Identities = 37/91 (40%), Positives = 58/91 (63%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI + + P L+ + V++ V +LE++ +L G R+E+RGFGSFS+ R R+
Sbjct: 1 MTKSELIANLVAQYPSLSVKSVDESVKEILEQIMGSLEQGERIEVRGFGSFSLHYRQPRV 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + + ++ K VP F+AGK LKER++
Sbjct: 61 GRNPKTGESVKLDAKYVPHFKAGKELKERVD 91
>gi|188992772|ref|YP_001904782.1| histone-like protein [Xanthomonas campestris pv. campestris str.
B100]
gi|167734532|emb|CAP52742.1| histone-like protein [Xanthomonas campestris pv. campestris]
Length = 132
Score = 104 bits (260), Expect = 4e-21, Method: Composition-based stats.
Identities = 32/91 (35%), Positives = 50/91 (54%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI +A ++ + + V+ ++ E+T+AL G V + GFG+F VR+RA R
Sbjct: 43 MNKTELIDGVAAA-ADISKAEAGRAVDAVVSEITKALKKGDAVTLVGFGTFQVRERAERT 101
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P I + P F+AGK LK+ +N
Sbjct: 102 GRNPKTGDSIKIAASKNPAFKAGKALKDAVN 132
>gi|156973715|ref|YP_001444622.1| nucleoid DNA-binding protein [Vibrio harveyi ATCC BAA-1116]
gi|156525309|gb|ABU70395.1| hypothetical protein VIBHAR_01420 [Vibrio harveyi ATCC BAA-1116]
Length = 90
Score = 104 bits (260), Expect = 4e-21, Method: Composition-based stats.
Identities = 33/91 (36%), Positives = 52/91 (57%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ L+ IA+ N ++ + ++ ++ ++ L +G +V + GFG+FSVR RAAR
Sbjct: 1 MNKTQLVEQIAE-NADISKASAGRALDAFIDAVSGTLQSGDQVALVGFGTFSVRTRAART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P I + E VP F+AGK LK+ N
Sbjct: 60 GRNPKTGDEIQIAEAKVPSFKAGKALKDACN 90
>gi|260773191|ref|ZP_05882107.1| DNA-binding protein HU-beta [Vibrio metschnikovii CIP 69.14]
gi|260612330|gb|EEX37533.1| DNA-binding protein HU-beta [Vibrio metschnikovii CIP 69.14]
Length = 90
Score = 104 bits (260), Expect = 4e-21, Method: Composition-based stats.
Identities = 35/91 (38%), Positives = 53/91 (58%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ L+ IA+ N ++ + ++ +E +T L +G +V + GFG+FSVR RAAR
Sbjct: 1 MNKTQLVEKIAE-NADISKASAGRALDAFIEAVTDTLQSGDQVALVGFGTFSVRSRAART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + I + E VP F+AGK LK+ N
Sbjct: 60 GRNPKTGEEIQIAEAKVPAFKAGKALKDACN 90
>gi|260776379|ref|ZP_05885274.1| DNA-binding protein HU-beta [Vibrio coralliilyticus ATCC BAA-450]
gi|261253456|ref|ZP_05946029.1| DNA-binding protein HU-beta [Vibrio orientalis CIP 102891]
gi|323495053|ref|ZP_08100142.1| DNA-binding protein HU-beta [Vibrio brasiliensis LMG 20546]
gi|260607602|gb|EEX33867.1| DNA-binding protein HU-beta [Vibrio coralliilyticus ATCC BAA-450]
gi|260936847|gb|EEX92836.1| DNA-binding protein HU-beta [Vibrio orientalis CIP 102891]
gi|323310710|gb|EGA63885.1| DNA-binding protein HU-beta [Vibrio brasiliensis LMG 20546]
Length = 90
Score = 104 bits (260), Expect = 4e-21, Method: Composition-based stats.
Identities = 35/91 (38%), Positives = 52/91 (57%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ L+ IA+ N L+ + ++ +E + L +G +V + GFG+FSVR RAAR
Sbjct: 1 MNKTQLVEKIAE-NADLSKASAGRALDAFIEAVGDTLQSGDQVALVGFGTFSVRTRAART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + I + E VP F+AGK LK+ N
Sbjct: 60 GRNPKTGEEIQIAEAKVPAFKAGKALKDSCN 90
>gi|218289480|ref|ZP_03493708.1| histone family protein DNA-binding protein [Alicyclobacillus
acidocaldarius LAA1]
gi|218240348|gb|EED07530.1| histone family protein DNA-binding protein [Alicyclobacillus
acidocaldarius LAA1]
Length = 91
Score = 104 bits (260), Expect = 4e-21, Method: Composition-based stats.
Identities = 32/90 (35%), Positives = 54/90 (60%), Gaps = 1/90 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K LI A++ L+ +D E ++N L + + + + +G +V+I GFG+F +R+RAAR
Sbjct: 1 MNKRDLIRKTAEQT-GLSQKDCEAVINALFDTIRKTVESGEKVQIIGFGTFELRERAART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
AR P + + V + VP F+ G LK+ +
Sbjct: 60 ARNPRTGEAVEVPARRVPAFKPGAELKQAV 89
>gi|114563293|ref|YP_750806.1| integration host factor, beta subunit [Shewanella frigidimarina
NCIMB 400]
gi|122299645|sp|Q081U7|IHFB_SHEFN RecName: Full=Integration host factor subunit beta;
Short=IHF-beta
gi|114334586|gb|ABI71968.1| integration host factor, beta subunit [Shewanella frigidimarina
NCIMB 400]
Length = 95
Score = 104 bits (260), Expect = 4e-21, Method: Composition-based stats.
Identities = 39/92 (42%), Positives = 57/92 (61%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI +A + +L+ ++VE + +LE+M L G R+EIRGFGSFS+ RA R
Sbjct: 1 MTKSELIEKLATRQSQLSAKEVESAIKEMLEQMATTLETGDRIEIRGFGSFSLHYRAPRT 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P + +E K VP F+ GK L+ER+++
Sbjct: 61 GRNPKTGTSVDLEGKYVPHFKPGKELRERVDA 92
>gi|28198389|ref|NP_778703.1| histone-like protein [Xylella fastidiosa Temecula1]
gi|182681031|ref|YP_001829191.1| histone family protein DNA-binding protein [Xylella fastidiosa
M23]
gi|32129475|sp|Q87E48|DBH_XYLFT RecName: Full=DNA-binding protein HU
gi|28056459|gb|AAO28352.1| histone-like protein [Xylella fastidiosa Temecula1]
gi|182631141|gb|ACB91917.1| histone family protein DNA-binding protein [Xylella fastidiosa
M23]
gi|307579499|gb|ADN63468.1| histone family protein DNA-binding protein [Xylella fastidiosa
subsp. fastidiosa GB514]
Length = 94
Score = 104 bits (260), Expect = 4e-21, Method: Composition-based stats.
Identities = 31/92 (33%), Positives = 50/92 (54%), Gaps = 1/92 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI +A L+ + + ++ ++ E+T+AL G V + GFG+F VR+RA R
Sbjct: 1 MNKTELIDGVAAA-ANLSKVEAGRAIDAVVNEITEALKEGDSVTLVGFGTFQVRQRAERP 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P + I + P F+ GK LK+ + S
Sbjct: 60 GRNPKTGEPIMIAASNNPSFKPGKALKDAVKS 91
>gi|91793110|ref|YP_562761.1| integration host factor, beta subunit [Shewanella denitrificans
OS217]
gi|122968769|sp|Q12ND8|IHFB_SHEDO RecName: Full=Integration host factor subunit beta;
Short=IHF-beta
gi|91715112|gb|ABE55038.1| integration host factor, beta subunit [Shewanella denitrificans
OS217]
Length = 95
Score = 104 bits (260), Expect = 4e-21, Method: Composition-based stats.
Identities = 38/92 (41%), Positives = 57/92 (61%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI +A + +L+ ++VE + +LE+M L G R+EIRGFGSFS+ RA R
Sbjct: 1 MTKSELIEKLATRQSQLSAKEVESAIKEMLEQMATTLEGGDRIEIRGFGSFSLHYRAPRT 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P + ++ K VP F+ GK L+ER+++
Sbjct: 61 GRNPKTGTSVELDGKYVPHFKPGKELRERVDA 92
>gi|262196926|ref|YP_003268135.1| integration host factor, subunit alpha [Haliangium ochraceum DSM
14365]
gi|262080273|gb|ACY16242.1| integration host factor, alpha subunit [Haliangium ochraceum DSM
14365]
Length = 100
Score = 104 bits (260), Expect = 4e-21, Method: Composition-based stats.
Identities = 27/94 (28%), Positives = 52/94 (55%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ +I + +K + ++ +IV + + + Q L G +++I GFG+F VR++ AR+
Sbjct: 4 MTKADIIDAVYEKVGGFSKKEAAEIVETVFDTIKQTLEQGEKIKISGFGNFVVREKKARI 63
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSPD 94
R P + I++ + V F+ + LK LN +
Sbjct: 64 GRNPQTGEEITISARRVLTFKPSQVLKNALNGGE 97
>gi|118590043|ref|ZP_01547447.1| Histone-like DNA-binding protein [Stappia aggregata IAM 12614]
gi|118437540|gb|EAV44177.1| Histone-like DNA-binding protein [Stappia aggregata IAM 12614]
Length = 91
Score = 104 bits (260), Expect = 4e-21, Method: Composition-based stats.
Identities = 33/92 (35%), Positives = 50/92 (54%), Gaps = 1/92 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI +A+K L + V+ + +TQ L +G V I GFG+F+V +RAA
Sbjct: 1 MNKNDLIAAVAEKT-GLTKAQAGEAVDATFDAVTQTLKSGDEVRIIGFGNFTVSERAATE 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P + I + P F+AGK LK+ +N+
Sbjct: 60 GRNPRTGETIQIPASKTPKFKAGKGLKDAVNA 91
>gi|118477063|ref|YP_894214.1| DNA-binding protein HU [Bacillus thuringiensis str. Al Hakam]
gi|118416288|gb|ABK84707.1| bacterial nucleoid protein Hbs [Bacillus thuringiensis str. Al
Hakam]
Length = 117
Score = 104 bits (260), Expect = 4e-21, Method: Composition-based stats.
Identities = 33/91 (36%), Positives = 54/91 (59%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI +A+ + L+ +D K V+ + + + +AL G +V++ GFG+F VR+RAAR
Sbjct: 28 MNKTDLINAVAEASS-LSKKDATKAVDAVFDSILEALKQGDKVQLIGFGNFEVRERAARK 86
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + I + VP F+ GK LK+ +
Sbjct: 87 GRNPQTGEEIEIAASKVPAFKPGKALKDAVK 117
>gi|260768944|ref|ZP_05877878.1| DNA-binding protein HU-beta [Vibrio furnissii CIP 102972]
gi|260616974|gb|EEX42159.1| DNA-binding protein HU-beta [Vibrio furnissii CIP 102972]
gi|315180640|gb|ADT87554.1| DNA-binding protein HU-beta [Vibrio furnissii NCTC 11218]
Length = 90
Score = 104 bits (260), Expect = 4e-21, Method: Composition-based stats.
Identities = 33/91 (36%), Positives = 52/91 (57%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ L+ IA N ++ + ++ +E ++ L +G +V + GFG+F+VR RAAR
Sbjct: 1 MNKTQLVEQIAA-NADISKASAGRALDAFIEAVSDTLQSGDQVALVGFGTFAVRTRAART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + I + E VP F+AGK LK+ N
Sbjct: 60 GRNPKTGEEIQIAEAKVPAFKAGKALKDACN 90
>gi|194337655|ref|YP_002019449.1| histone family protein DNA-binding protein [Pelodictyon
phaeoclathratiforme BU-1]
gi|194310132|gb|ACF44832.1| histone family protein DNA-binding protein [Pelodictyon
phaeoclathratiforme BU-1]
Length = 91
Score = 104 bits (260), Expect = 4e-21, Method: Composition-based stats.
Identities = 33/90 (36%), Positives = 51/90 (56%), Gaps = 1/90 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ L+ IA + KL D E+ VN + + +L +G V + GFG+F+V KRA RL
Sbjct: 1 MSKAELVEKIADQ-AKLTKVDAERAVNAFINVVIDSLKDGDDVTLVGFGTFAVGKRAERL 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P + I++ K V F+ GK L++ +
Sbjct: 60 GRNPQTGEAITIAAKNVVKFKPGKALRDGI 89
>gi|154253667|ref|YP_001414491.1| histone family DNA-binding protein [Parvibaculum lavamentivorans
DS-1]
gi|154157617|gb|ABS64834.1| histone family protein DNA-binding protein [Parvibaculum
lavamentivorans DS-1]
Length = 91
Score = 104 bits (260), Expect = 4e-21, Method: Composition-based stats.
Identities = 33/92 (35%), Positives = 51/92 (55%), Gaps = 1/92 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI +A ++ L+ D K V+ + + +T +L G V + GFG+F+V RAA
Sbjct: 1 MNKNDLIAEVADRS-GLSKADATKAVDYVFDIITDSLKKGEEVRLVGFGTFNVSNRAATE 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P + I + P F+AGK LK+ +NS
Sbjct: 60 GRNPRTGETIQIPASKQPKFKAGKGLKDAVNS 91
>gi|24373948|ref|NP_717991.1| integration host factor, beta subunit [Shewanella oneidensis
MR-1]
gi|113970263|ref|YP_734056.1| integration host factor subunit beta [Shewanella sp. MR-4]
gi|114047548|ref|YP_738098.1| integration host factor subunit beta [Shewanella sp. MR-7]
gi|117920423|ref|YP_869615.1| integration host factor subunit beta [Shewanella sp. ANA-3]
gi|81744768|sp|Q8EEI1|IHFB_SHEON RecName: Full=Integration host factor subunit beta;
Short=IHF-beta
gi|122944665|sp|Q0HV14|IHFB_SHESR RecName: Full=Integration host factor subunit beta;
Short=IHF-beta
gi|123325047|sp|Q0HIW8|IHFB_SHESM RecName: Full=Integration host factor subunit beta;
Short=IHF-beta
gi|166975892|sp|A0KWP0|IHFB_SHESA RecName: Full=Integration host factor subunit beta;
Short=IHF-beta
gi|24348383|gb|AAN55435.1|AE015680_10 integration host factor, beta subunit [Shewanella oneidensis
MR-1]
gi|113884947|gb|ABI38999.1| integration host factor, beta subunit [Shewanella sp. MR-4]
gi|113888990|gb|ABI43041.1| integration host factor, beta subunit [Shewanella sp. MR-7]
gi|117612755|gb|ABK48209.1| integration host factor, beta subunit [Shewanella sp. ANA-3]
Length = 95
Score = 104 bits (260), Expect = 4e-21, Method: Composition-based stats.
Identities = 39/92 (42%), Positives = 58/92 (63%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI +A + +L+ ++VE + +LE+M L +G R+EIRGFGSFS+ RA R
Sbjct: 1 MTKSELIEKLATRQSQLSAKEVEGAIKEMLEQMATTLESGDRIEIRGFGSFSLHYRAPRT 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P + +E K VP F+ GK L+ER+++
Sbjct: 61 GRNPKTGSSVELEGKYVPHFKPGKELRERVDA 92
>gi|302878691|ref|YP_003847255.1| integration host factor, beta subunit [Gallionella
capsiferriformans ES-2]
gi|302581480|gb|ADL55491.1| integration host factor, beta subunit [Gallionella
capsiferriformans ES-2]
Length = 97
Score = 104 bits (260), Expect = 4e-21, Method: Composition-based stats.
Identities = 39/97 (40%), Positives = 59/97 (60%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M +S LI +A K P+L D++ V +L+EM++ LA G R+EIRGFGSF + R R
Sbjct: 1 MTRSELIAQLAAKFPQLTNSDIDMAVRTILDEMSRTLARGNRIEIRGFGSFGLNHRPPRK 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDSTL 97
R P + + V K VP F+ GK L+ER+++ ++
Sbjct: 61 GRNPKSGVNVMVPAKYVPHFKTGKELRERVDATAGSV 97
>gi|188026554|ref|ZP_02962557.2| hypothetical protein PROSTU_04688 [Providencia stuartii ATCC
25827]
gi|188019405|gb|EDU57445.1| hypothetical protein PROSTU_04688 [Providencia stuartii ATCC
25827]
Length = 96
Score = 104 bits (260), Expect = 4e-21, Method: Composition-based stats.
Identities = 35/91 (38%), Positives = 52/91 (57%), Gaps = 1/91 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
KS LI IA + ++ ++V+ + +T +L+ G V + GFG+F+VR+RAAR
Sbjct: 7 NKSQLIDQIASE-ANISKAAAGRVVDAFVASVTTSLSKGDDVALVGFGTFTVRERAARTG 65
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P K I + VP FR GK LK+ +NS
Sbjct: 66 RNPQTGKEIKIAAAKVPAFRPGKGLKDAVNS 96
>gi|62464771|ref|YP_220382.1| hypothetical protein p49879_1p05 [Leptospirillum ferrooxidans]
gi|60739072|gb|AAX36038.1| ORF98 [Leptospirillum ferrooxidans]
Length = 98
Score = 104 bits (260), Expect = 4e-21, Method: Composition-based stats.
Identities = 27/91 (29%), Positives = 53/91 (58%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ L+ +++ + L+ +DV+ +++ L + +L G +V + GFG+F K+ AR
Sbjct: 1 MNKTELVESVSD-SSHLSKKDVQAVLDGFLATIGDSLKKGEKVALVGFGTFETVKKEART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + + + + VP F AGK+L+E ++
Sbjct: 60 GRNPRTGEALEIPARTVPKFSAGKSLREAID 90
>gi|126174292|ref|YP_001050441.1| integration host factor subunit beta [Shewanella baltica OS155]
gi|153000798|ref|YP_001366479.1| integration host factor subunit beta [Shewanella baltica OS185]
gi|160875507|ref|YP_001554823.1| integration host factor subunit beta [Shewanella baltica OS195]
gi|217973243|ref|YP_002357994.1| integration host factor subunit beta [Shewanella baltica OS223]
gi|304408839|ref|ZP_07390460.1| integration host factor, beta subunit [Shewanella baltica OS183]
gi|307302842|ref|ZP_07582597.1| integration host factor, beta subunit [Shewanella baltica BA175]
gi|166975888|sp|A3D4A9|IHFB_SHEB5 RecName: Full=Integration host factor subunit beta;
Short=IHF-beta
gi|166975889|sp|A6WNM7|IHFB_SHEB8 RecName: Full=Integration host factor subunit beta;
Short=IHF-beta
gi|189045043|sp|A9L2X4|IHFB_SHEB9 RecName: Full=Integration host factor subunit beta;
Short=IHF-beta
gi|254803540|sp|B8EA98|IHFB_SHEB2 RecName: Full=Integration host factor subunit beta;
Short=IHF-beta
gi|125997497|gb|ABN61572.1| integration host factor, beta subunit [Shewanella baltica OS155]
gi|151365416|gb|ABS08416.1| integration host factor, beta subunit [Shewanella baltica OS185]
gi|160861029|gb|ABX49563.1| integration host factor, beta subunit [Shewanella baltica OS195]
gi|217498378|gb|ACK46571.1| integration host factor, beta subunit [Shewanella baltica OS223]
gi|304352660|gb|EFM17057.1| integration host factor, beta subunit [Shewanella baltica OS183]
gi|306913202|gb|EFN43624.1| integration host factor, beta subunit [Shewanella baltica BA175]
gi|315267694|gb|ADT94547.1| integration host factor, beta subunit [Shewanella baltica OS678]
Length = 95
Score = 104 bits (260), Expect = 4e-21, Method: Composition-based stats.
Identities = 39/92 (42%), Positives = 58/92 (63%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI +A + +L+ ++VE + +LE+M L +G R+EIRGFGSFS+ RA R
Sbjct: 1 MTKSELIEKLATRQSQLSAKEVEGAIKEMLEQMATTLESGDRIEIRGFGSFSLHYRAPRT 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P + +E K VP F+ GK L+ER+++
Sbjct: 61 GRNPKTGSSVDLEGKYVPHFKPGKELRERVDA 92
>gi|120598786|ref|YP_963360.1| integration host factor subunit beta [Shewanella sp. W3-18-1]
gi|146293137|ref|YP_001183561.1| integration host factor subunit beta [Shewanella putrefaciens
CN-32]
gi|166975891|sp|A4Y729|IHFB_SHEPC RecName: Full=Integration host factor subunit beta;
Short=IHF-beta
gi|166975893|sp|A1RJG1|IHFB_SHESW RecName: Full=Integration host factor subunit beta;
Short=IHF-beta
gi|120558879|gb|ABM24806.1| integration host factor, beta subunit [Shewanella sp. W3-18-1]
gi|145564827|gb|ABP75762.1| integration host factor, beta subunit [Shewanella putrefaciens
CN-32]
gi|319426351|gb|ADV54425.1| integration host factor, beta subunit [Shewanella putrefaciens
200]
Length = 95
Score = 104 bits (260), Expect = 5e-21, Method: Composition-based stats.
Identities = 39/92 (42%), Positives = 58/92 (63%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI +A + +L+ ++VE + +LE+M L +G R+EIRGFGSFS+ RA R
Sbjct: 1 MTKSELIEKLATRQSQLSAKEVESAIKEMLEQMATTLESGDRIEIRGFGSFSLHYRAPRT 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P + +E K VP F+ GK L+ER+++
Sbjct: 61 GRNPKTGSSVELEGKYVPHFKPGKELRERVDA 92
>gi|50084585|ref|YP_046095.1| DNA-binding protein HU-beta [Acinetobacter sp. ADP1]
gi|49530561|emb|CAG68273.1| DNA-binding protein HU-beta [Acinetobacter sp. ADP1]
Length = 90
Score = 104 bits (260), Expect = 5e-21, Method: Composition-based stats.
Identities = 36/90 (40%), Positives = 53/90 (58%), Gaps = 1/90 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI IA+K L+ D K ++ + +T+AL G V + GFG+FSV+ RAAR
Sbjct: 1 MNKSELIDAIAEK-GGLSKTDAGKALDATIASVTEALKKGDTVTLVGFGTFSVKDRAART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P + + ++ VP F+AGK LK+ +
Sbjct: 60 GRNPKTGEELQIKATKVPSFKAGKGLKDSV 89
>gi|38637989|ref|NP_942963.1| putative histone-like protein [Ralstonia eutropha H16]
gi|32527327|gb|AAP86077.1| putative histone-like protein [Ralstonia eutropha H16]
Length = 114
Score = 104 bits (260), Expect = 5e-21, Method: Composition-based stats.
Identities = 32/93 (34%), Positives = 48/93 (51%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI IA L E+ +N+ L + A+A G + + GFG+FS +RA R+
Sbjct: 22 MTKAELIEAIAAGVDGLTKAKAEEALNVTLHAIMDAVAKGDALSLVGFGTFSKGERAERM 81
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSP 93
AR P + I VE F+AG+ +E +N
Sbjct: 82 ARNPRTGEEIKVEAARTVKFKAGQRFREAVNQE 114
>gi|269468801|gb|EEZ80405.1| DNA-binding protein HU [uncultured SUP05 cluster bacterium]
Length = 90
Score = 104 bits (260), Expect = 5e-21, Method: Composition-based stats.
Identities = 39/91 (42%), Positives = 49/91 (53%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI IA L+ D + +N +T A+A G V+I GFGSF VR RAAR
Sbjct: 1 MNKSELIDAIA-STSGLSKADAGRALNATTGAITSAMAKGDGVQITGFGSFVVRDRAART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P I ++ V F+AGK LKE +N
Sbjct: 60 GRNPQTGATIQIKASKVAAFKAGKALKEAVN 90
>gi|313667657|ref|YP_004047941.1| dna-binding protein HU-beta 2 [Neisseria lactamica ST-640]
gi|313005119|emb|CBN86551.1| dna-binding protein HU-beta 2 [Neisseria lactamica 020-06]
Length = 91
Score = 104 bits (259), Expect = 5e-21, Method: Composition-based stats.
Identities = 33/91 (36%), Positives = 49/91 (53%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI IA + +L+ D V+ + +TQA+ +G V + GFGSF + A R
Sbjct: 1 MNKSELIQAIADE-AELSKLDAAAFVDAFVSVVTQAMKDGKDVTLVGFGSFHTAQSAERK 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + + + + P FRAGK LK+ +N
Sbjct: 60 GRNPKTGEPLIIAARKTPKFRAGKALKDAVN 90
>gi|229552183|ref|ZP_04440908.1| non-specific DNA-binding protein HBsu [Lactobacillus rhamnosus
LMS2-1]
gi|229314485|gb|EEN80458.1| non-specific DNA-binding protein HBsu [Lactobacillus rhamnosus
LMS2-1]
Length = 104
Score = 104 bits (259), Expect = 5e-21, Method: Composition-based stats.
Identities = 30/90 (33%), Positives = 48/90 (53%), Gaps = 1/90 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ LI ++A L +D V+ + + +L+ G +V++ GFG+F VR+RAAR
Sbjct: 16 NKAELIESVASAT-GLTKKDATAAVDAVFGSIQDSLSKGDKVQLIGFGNFEVRERAARKG 74
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P I + VP F+ GK LK+ +
Sbjct: 75 RNPQTGAEIKIPASKVPAFKPGKALKDAVK 104
>gi|88703270|ref|ZP_01100986.1| Histone-like bacterial DNA-binding protein [Congregibacter
litoralis KT71]
gi|88701984|gb|EAQ99087.1| Histone-like bacterial DNA-binding protein [Congregibacter
litoralis KT71]
Length = 115
Score = 104 bits (259), Expect = 5e-21, Method: Composition-based stats.
Identities = 35/91 (38%), Positives = 53/91 (58%), Gaps = 1/91 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
KS LI IA +N D + ++ +++ +T L G +V + GFG+FSV+ RAAR
Sbjct: 26 NKSDLIDAIASA-ADINKSDAGRALDAVVDSITDTLKKGDQVSLVGFGTFSVKHRAARDG 84
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P + I ++ VP F+AGK LK+ +NS
Sbjct: 85 RNPQTGETIKIKASNVPGFKAGKALKDAVNS 115
>gi|319403502|emb|CBI77081.1| integration host factor beta chain [Bartonella rochalimae ATCC
BAA-1498]
gi|319406416|emb|CBI80056.1| integration host factor beta chain [Bartonella sp. 1-1C]
Length = 92
Score = 104 bits (259), Expect = 5e-21, Method: Composition-based stats.
Identities = 46/92 (50%), Positives = 67/92 (72%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M+KS L+ IA+ NP L +D E +V+ + E+++ ALANG RVE+RGFG+FS++ R+AR
Sbjct: 1 MVKSELVQIIARHNPHLMQRDAENVVSAIFEKISAALANGQRVELRGFGAFSIKTRSARN 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P + + VEEK VPFF+ GK+L++RLN
Sbjct: 61 GRNPRTGETVMVEEKWVPFFKTGKDLRDRLNK 92
>gi|146310568|ref|YP_001175642.1| transcriptional regulator HU subunit beta [Enterobacter sp. 638]
gi|145317444|gb|ABP59591.1| bacterial nucleoid protein HU beta subunit [Enterobacter sp. 638]
Length = 90
Score = 104 bits (259), Expect = 5e-21, Method: Composition-based stats.
Identities = 35/91 (38%), Positives = 53/91 (58%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI IA ++ + ++ L+ +T+ L +G V + GFG+F+V++RAAR
Sbjct: 1 MNKSQLIDKIAA-GADISKAAAGRALDALIASVTETLQSGDDVALVGFGTFAVKERAART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P K I++ VP FRAGK LK+ +N
Sbjct: 60 GRNPQTGKEITIAAAKVPGFRAGKALKDAVN 90
>gi|261406040|ref|YP_003242281.1| histone family protein DNA-binding protein [Paenibacillus sp.
Y412MC10]
gi|315646418|ref|ZP_07899536.1| histone family protein DNA-binding protein [Paenibacillus vortex
V453]
gi|329929885|ref|ZP_08283561.1| DNA-binding protein HU-beta [Paenibacillus sp. HGF5]
gi|261282503|gb|ACX64474.1| histone family protein DNA-binding protein [Paenibacillus sp.
Y412MC10]
gi|315278061|gb|EFU41381.1| histone family protein DNA-binding protein [Paenibacillus vortex
V453]
gi|328935863|gb|EGG32324.1| DNA-binding protein HU-beta [Paenibacillus sp. HGF5]
Length = 90
Score = 104 bits (259), Expect = 5e-21, Method: Composition-based stats.
Identities = 32/91 (35%), Positives = 56/91 (61%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI +A+ +L+ +D K V+ + + +++AL +G +V++ GFG+F VR+R+AR
Sbjct: 1 MNKSDLITQVAEST-ELSKKDATKAVDAVFDAISEALQSGDKVQLVGFGNFEVRERSARK 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + I + +P F+ GK LK+ +
Sbjct: 60 GRNPQTGEEIEIPASKIPAFKPGKALKDGIK 90
>gi|88860448|ref|ZP_01135086.1| DNA-binding protein HU-beta (NS1) (HU-1) [Pseudoalteromonas
tunicata D2]
gi|88817646|gb|EAR27463.1| DNA-binding protein HU-beta (NS1) (HU-1) [Pseudoalteromonas
tunicata D2]
Length = 90
Score = 104 bits (259), Expect = 5e-21, Method: Composition-based stats.
Identities = 35/91 (38%), Positives = 51/91 (56%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI IA ++ + ++ ++ +T AL +G V + GFGSFSVR+RAAR
Sbjct: 1 MNKSQLIDEIAA-GADISKAAAGRALDSFIDAVTTALKDGDSVALVGFGSFSVRERAARS 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P I + +P F+AGK LK+ +N
Sbjct: 60 GRNPQTGATIEIAAANIPSFKAGKALKDAVN 90
>gi|294497364|ref|YP_003561064.1| DNA-binding protein HU [Bacillus megaterium QM B1551]
gi|295702737|ref|YP_003595812.1| DNA-binding protein HU [Bacillus megaterium DSM 319]
gi|294347301|gb|ADE67630.1| DNA-binding protein HU [Bacillus megaterium QM B1551]
gi|294800396|gb|ADF37462.1| DNA-binding protein HU [Bacillus megaterium DSM 319]
Length = 90
Score = 104 bits (259), Expect = 5e-21, Method: Composition-based stats.
Identities = 35/91 (38%), Positives = 54/91 (59%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ L+ +A K+ +L D K V+ LLE ++ L G ++++ GFG+F VR+RAAR
Sbjct: 1 MNKTDLVNAVATKS-ELTKADASKAVDALLETISSTLGEGEKIQLIGFGTFEVRERAART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + + + VP F+AGK LKE +
Sbjct: 60 GRNPQTGEEMQIPASKVPAFKAGKELKEAVK 90
>gi|257094678|ref|YP_003168319.1| histone family protein DNA-binding protein [Candidatus
Accumulibacter phosphatis clade IIA str. UW-1]
gi|257047202|gb|ACV36390.1| histone family protein DNA-binding protein [Candidatus
Accumulibacter phosphatis clade IIA str. UW-1]
Length = 96
Score = 104 bits (259), Expect = 5e-21, Method: Composition-based stats.
Identities = 38/92 (41%), Positives = 55/92 (59%), Gaps = 2/92 (2%)
Query: 1 MIKSSLIGTIAKKN--PKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAA 58
M +S LI +A + +L +D E V +LE M++AL +GGR+EI GFGSF++ A
Sbjct: 1 MTRSELITRLAAHSHFAQLTAKDDELTVKAILEGMSEALVSGGRIEIHGFGSFALNDSAP 60
Query: 59 RLARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R R P+ + + V K VP F GK L+ER+
Sbjct: 61 RNGRNPMTGETVPVPAKRVPHFTPGKELRERV 92
>gi|56460110|ref|YP_155391.1| nucleoid DNA-binding protein HU-beta [Idiomarina loihiensis L2TR]
gi|56179120|gb|AAV81842.1| Bacterial nucleoid DNA-binding protein HU-beta [Idiomarina
loihiensis L2TR]
Length = 90
Score = 104 bits (259), Expect = 5e-21, Method: Composition-based stats.
Identities = 33/91 (36%), Positives = 52/91 (57%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI IA ++ + ++ +++ +T AL +V + GFG+FSVR+R+AR
Sbjct: 1 MNKSQLIDKIAA-GADISKAAAGRALDSMIDAVTDALKKDDQVALVGFGTFSVRERSART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + I + VP F+AGK LK+ +N
Sbjct: 60 GRNPQTGETIQIAAAKVPSFKAGKALKDAVN 90
>gi|262370473|ref|ZP_06063799.1| DNA-binding protein HU-beta [Acinetobacter johnsonii SH046]
gi|262314815|gb|EEY95856.1| DNA-binding protein HU-beta [Acinetobacter johnsonii SH046]
Length = 90
Score = 104 bits (259), Expect = 5e-21, Method: Composition-based stats.
Identities = 35/90 (38%), Positives = 54/90 (60%), Gaps = 1/90 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI IA+K L+ D K ++ + +T+AL +G V + GFG+F+V++RAAR
Sbjct: 1 MNKSELIDAIAEK-GGLSKTDAGKALDATIASITEALKSGDTVTLVGFGTFNVKERAART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P + ++ VP F+AGK LK+ +
Sbjct: 60 GRNPQTGATLEIKASKVPSFKAGKGLKDSV 89
>gi|251796413|ref|YP_003011144.1| histone family protein DNA-binding protein [Paenibacillus sp.
JDR-2]
gi|247544039|gb|ACT01058.1| histone family protein DNA-binding protein [Paenibacillus sp.
JDR-2]
Length = 103
Score = 104 bits (259), Expect = 5e-21, Method: Composition-based stats.
Identities = 32/92 (34%), Positives = 56/92 (60%), Gaps = 1/92 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI +A+ L+ +D K V+ + E ++ AL +G +V++ GFG+F VR+R AR
Sbjct: 13 MNKTDLINKVAE-LSDLSKKDATKAVDAVFEAISDALQSGDKVQLVGFGNFEVRERQARK 71
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P + I + +P F+ GK+LK+ +++
Sbjct: 72 GRNPQTGEEIDIAASKMPAFKPGKSLKDLVSN 103
>gi|121727102|ref|ZP_01680276.1| integration host factor, beta subunit [Vibrio cholerae V52]
gi|121630480|gb|EAX62872.1| integration host factor, beta subunit [Vibrio cholerae V52]
Length = 92
Score = 104 bits (259), Expect = 5e-21, Method: Composition-based stats.
Identities = 38/91 (41%), Positives = 53/91 (58%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI + + L+ +++E V +LE M L G R+EIRGFGSFS+ R R+
Sbjct: 1 MTKSXLIERLCAEQTHLSAKEIEDAVKNILEHMASTLEAGERIEIRGFGSFSLHYREPRV 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + +E K VP F+ GK L+ER+N
Sbjct: 61 GRNPKTGDKVELEGKYVPHFKPGKELRERVN 91
>gi|40062481|gb|AAR37433.1| integration host factor, beta subunit, putative [uncultured
marine bacterium 105]
Length = 115
Score = 104 bits (259), Expect = 5e-21, Method: Composition-based stats.
Identities = 37/100 (37%), Positives = 59/100 (59%), Gaps = 3/100 (3%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ L+ ++ + +L + E IV+ + + + AL G ++E+RGFGSF +R+R R
Sbjct: 1 MTKAELVEEVS-RVSELTKKHSEVIVDTVFKSIVTALHRGEKIELRGFGSFRLRQREPRK 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN--SPDSTLS 98
R P + V K VP+F+ GK+LKE +N S +ST S
Sbjct: 60 GRNPKTGDRVDVPPKKVPYFKPGKDLKELINRRSKESTAS 99
>gi|170726660|ref|YP_001760686.1| integration host factor subunit beta [Shewanella woodyi ATCC
51908]
gi|226709813|sp|B1KF50|IHFB_SHEWM RecName: Full=Integration host factor subunit beta;
Short=IHF-beta
gi|169812007|gb|ACA86591.1| integration host factor, beta subunit [Shewanella woodyi ATCC
51908]
Length = 95
Score = 104 bits (259), Expect = 5e-21, Method: Composition-based stats.
Identities = 39/92 (42%), Positives = 58/92 (63%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI +A + +L+ ++VE + +LE+M Q L G R+EIRGFGSFS+ RA R
Sbjct: 1 MTKSELIEKLAMRQSQLSAKEVESAIKEMLEQMAQTLEGGDRIEIRGFGSFSLHFRAPRT 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P + ++ K VP F+ GK L+ER+++
Sbjct: 61 GRNPKTGTSVELDGKYVPHFKPGKELRERVDA 92
>gi|93006477|ref|YP_580914.1| histone-like DNA-binding protein [Psychrobacter cryohalolentis
K5]
gi|92394155|gb|ABE75430.1| histone-like DNA-binding protein [Psychrobacter cryohalolentis
K5]
Length = 90
Score = 104 bits (259), Expect = 5e-21, Method: Composition-based stats.
Identities = 40/91 (43%), Positives = 56/91 (61%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI +IA+K+ LN +N ++E + +AL G + + GFG+FSV+ R AR
Sbjct: 1 MNKSELIDSIAEKS-GLNKTQAGDALNAVMESVGEALEAGDSISLVGFGTFSVKDRKART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + +S+ VP F+AGKNLKERLN
Sbjct: 60 GRNPKTGEELSIPASKVPSFKAGKNLKERLN 90
>gi|149920506|ref|ZP_01908974.1| DNA-binding protein HU [Plesiocystis pacifica SIR-1]
gi|149818687|gb|EDM78132.1| DNA-binding protein HU [Plesiocystis pacifica SIR-1]
Length = 128
Score = 104 bits (259), Expect = 6e-21, Method: Composition-based stats.
Identities = 41/91 (45%), Positives = 55/91 (60%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI +A+++ L E +VN + E MT AL G +EIRGFGSF+VR+ A
Sbjct: 1 MTKSELIERVAQES-GLTKGRAEMVVNTIFESMTHALVAGDGIEIRGFGSFTVRQYKAYE 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P V+ V K +PFF+ GK L+ER+N
Sbjct: 60 GRNPRTGDVVHVAPKRLPFFKVGKELRERVN 90
>gi|110834074|ref|YP_692933.1| DNA-binding protein HU [Alcanivorax borkumensis SK2]
gi|110647185|emb|CAL16661.1| DNA-binding protein HU [Alcanivorax borkumensis SK2]
Length = 90
Score = 104 bits (259), Expect = 6e-21, Method: Composition-based stats.
Identities = 36/91 (39%), Positives = 53/91 (58%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI IA + ++ D + ++ LE +T AL NG V + GFG+F+V++R AR
Sbjct: 1 MNKSELIDAIAA-SADISKADAGRALDSTLEAVTGALKNGDSVSLVGFGTFAVKRREARD 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + I + VP F+AGK LK+ +N
Sbjct: 60 GRNPQTGQTIKIAAANVPGFKAGKALKDAVN 90
>gi|323498279|ref|ZP_08103281.1| DNA-binding protein HU-beta [Vibrio sinaloensis DSM 21326]
gi|323316707|gb|EGA69716.1| DNA-binding protein HU-beta [Vibrio sinaloensis DSM 21326]
Length = 90
Score = 104 bits (259), Expect = 6e-21, Method: Composition-based stats.
Identities = 36/91 (39%), Positives = 54/91 (59%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ L+ IA+ N L+ + ++ L+E + + L +G +V + GFG+FSVR RAAR
Sbjct: 1 MNKTQLVEKIAE-NADLSKASAGRALDALIEAVGETLQSGDQVALVGFGTFSVRTRAART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + I + E VP F+AGK LK+ N
Sbjct: 60 GRNPKTGEEIQIAEAKVPSFKAGKALKDACN 90
>gi|319651353|ref|ZP_08005482.1| DNA-binding protein HU 1 [Bacillus sp. 2_A_57_CT2]
gi|317396884|gb|EFV77593.1| DNA-binding protein HU 1 [Bacillus sp. 2_A_57_CT2]
Length = 90
Score = 104 bits (259), Expect = 6e-21, Method: Composition-based stats.
Identities = 34/91 (37%), Positives = 54/91 (59%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI +A+ +L+ +D K V+ + + + AL NG +V++ GFG+F VR+RAAR
Sbjct: 1 MNKTELINAVAEA-GELSKKDATKAVDAVFDTILDALKNGDKVQLIGFGNFEVRERAARK 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + I + VP F+ GK LK+ +
Sbjct: 60 GRNPQTGEEIEIAASKVPAFKPGKALKDAVK 90
>gi|284043331|ref|YP_003393671.1| histone family protein DNA-binding protein [Conexibacter woesei
DSM 14684]
gi|283947552|gb|ADB50296.1| histone family protein DNA-binding protein [Conexibacter woesei
DSM 14684]
Length = 91
Score = 104 bits (259), Expect = 6e-21, Method: Composition-based stats.
Identities = 31/92 (33%), Positives = 44/92 (47%), Gaps = 1/92 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS + +A N L+ +D V+ +L+ + +AL G V GFG F V +R AR
Sbjct: 1 MTKSEFVDQVAA-NSGLSKKDAGDAVDAVLQTIEEALKRGSEVTFSGFGKFHVAERGARE 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P + I + VP F G LK + S
Sbjct: 60 GRNPSTGEKIQIAASRVPRFTPGSGLKRAVKS 91
>gi|78187799|ref|YP_375842.1| histone-like DNA-binding protein [Chlorobium luteolum DSM 273]
gi|78167701|gb|ABB24799.1| Histone-like DNA-binding protein [Chlorobium luteolum DSM 273]
Length = 91
Score = 104 bits (259), Expect = 6e-21, Method: Composition-based stats.
Identities = 34/90 (37%), Positives = 49/90 (54%), Gaps = 1/90 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ L+ IA + KL D E+ VN + +T +L G V + GFG+F+ RAAR
Sbjct: 1 MSKAELVEKIAAQ-AKLTKVDAERAVNAFINVVTSSLKGGDDVTLVGFGTFTTGDRAARQ 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P K I++ K V F+ GK LK+ +
Sbjct: 60 GRNPQTGKAITIPAKKVVKFKPGKALKDEV 89
>gi|16079336|ref|NP_390160.1| non-specific DNA-binding protein HBsu; signal recognition
particle-like (SRP) component [Bacillus subtilis subsp.
subtilis str. 168]
gi|154686527|ref|YP_001421688.1| hypothetical protein RBAM_020950 [Bacillus amyloliquefaciens
FZB42]
gi|221310195|ref|ZP_03592042.1| hypothetical protein Bsubs1_12521 [Bacillus subtilis subsp.
subtilis str. 168]
gi|221314518|ref|ZP_03596323.1| hypothetical protein BsubsN3_12437 [Bacillus subtilis subsp.
subtilis str. NCIB 3610]
gi|221319440|ref|ZP_03600734.1| hypothetical protein BsubsJ_12363 [Bacillus subtilis subsp.
subtilis str. JH642]
gi|221323716|ref|ZP_03605010.1| hypothetical protein BsubsS_12492 [Bacillus subtilis subsp.
subtilis str. SMY]
gi|296332983|ref|ZP_06875440.1| hypothetical protein BSU6633_17908 [Bacillus subtilis subsp.
spizizenii ATCC 6633]
gi|305674913|ref|YP_003866585.1| non-specific DNA-binding protein HBsu; signal recognition
particle-like (SRP) component [Bacillus subtilis subsp.
spizizenii str. W23]
gi|308174071|ref|YP_003920776.1| non-specific DNA-binding protein HBsu [Bacillus amyloliquefaciens
DSM 7]
gi|311068794|ref|YP_003973717.1| non-specific DNA-binding protein HBsu; signal recognition
particle-like (SRP) component [Bacillus atrophaeus
1942]
gi|321311749|ref|YP_004204036.1| non-specific DNA-binding protein HBsu; signal recognition
particle-like (SRP) component [Bacillus subtilis BSn5]
gi|118263|sp|P08821|DBH1_BACSU RecName: Full=DNA-binding protein HU 1; AltName: Full=DNA-binding
protein II; AltName: Full=HB
gi|39936|emb|CAA36669.1| unnamed protein product [Bacillus subtilis subsp. subtilis str.
JH642]
gi|39938|emb|CAA47064.1| hbsu [Bacillus subtilis]
gi|143071|gb|AAA22535.1| hubgl [Bacillus subtilis]
gi|143073|gb|AAA22536.1| hubsub [Bacillus subtilis]
gi|2634697|emb|CAB14195.1| non-specific DNA-binding protein HBsu; signal recognition
particle-like (SRP) component [Bacillus subtilis subsp.
subtilis str. 168]
gi|154352378|gb|ABS74457.1| HupA [Bacillus amyloliquefaciens FZB42]
gi|291484703|dbj|BAI85778.1| non-specific DNA-binding protein HBsu [Bacillus subtilis subsp.
natto BEST195]
gi|296149834|gb|EFG90726.1| hypothetical protein BSU6633_17908 [Bacillus subtilis subsp.
spizizenii ATCC 6633]
gi|305413157|gb|ADM38276.1| non-specific DNA-binding protein HBsu; signal recognition
particle-like (SRP) component [Bacillus subtilis subsp.
spizizenii str. W23]
gi|307606935|emb|CBI43306.1| non-specific DNA-binding protein HBsu [Bacillus amyloliquefaciens
DSM 7]
gi|310869311|gb|ADP32786.1| non-specific DNA-binding protein HBsu; signal recognition
particle-like (SRP) component [Bacillus atrophaeus
1942]
gi|320018023|gb|ADV93009.1| non-specific DNA-binding protein HBsu; signal recognition
particle-like (SRP) component [Bacillus subtilis BSn5]
gi|328552803|gb|AEB23295.1| non-specific DNA-binding protein HBsu; signal recognition
particle-like (SRP) component [Bacillus
amyloliquefaciens TA208]
gi|328912401|gb|AEB63997.1| DNA-binding protein HU 1 [Bacillus amyloliquefaciens LL3]
gi|383705|prf||1904151A DNA-binding protein HBsu
Length = 92
Score = 104 bits (259), Expect = 6e-21, Method: Composition-based stats.
Identities = 32/90 (35%), Positives = 55/90 (61%), Gaps = 1/90 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI +A+ + +L+ +D K V+ + + + AL NG ++++ GFG+F VR+R+AR
Sbjct: 1 MNKTELINAVAEAS-ELSKKDATKAVDSVFDTILDALKNGDKIQLIGFGNFEVRERSARK 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P + I + VP F+ GK LK+ +
Sbjct: 60 GRNPQTGEEIEIPASKVPAFKPGKALKDAV 89
>gi|332187527|ref|ZP_08389264.1| bacterial DNA-binding family protein [Sphingomonas sp. S17]
gi|332012456|gb|EGI54524.1| bacterial DNA-binding family protein [Sphingomonas sp. S17]
Length = 94
Score = 104 bits (259), Expect = 6e-21, Method: Composition-based stats.
Identities = 42/91 (46%), Positives = 60/91 (65%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
MI+S L+ I + NP LN +++E IV + +E+T+ LA GRVE+RGFG+FS R R AR
Sbjct: 1 MIRSELVQKIGQHNPGLNPREIELIVTIFFDEITKRLAANGRVELRGFGAFSTRARDART 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + + V K VP+F+ GK ++ RLN
Sbjct: 61 GRNPRTGETVDVVAKRVPYFKPGKEMRARLN 91
>gi|53805229|ref|YP_113051.1| DNA-binding protein HU-beta [Methylococcus capsulatus str. Bath]
gi|53758990|gb|AAU93281.1| DNA-binding protein HU-beta [Methylococcus capsulatus str. Bath]
Length = 90
Score = 104 bits (259), Expect = 6e-21, Method: Composition-based stats.
Identities = 32/91 (35%), Positives = 51/91 (56%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI IA L D + ++ +++ +T AL G V + GFGSF+V++RA R
Sbjct: 1 MNKAELIEAIADA-ANLTKADAGRALDAVIDAITDALKKGDTVSLVGFGSFAVKERAERQ 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P I+++ +P F+ GK LK+ +N
Sbjct: 60 GRNPQTGDSITIKAAKIPSFKCGKALKDAVN 90
>gi|167569600|ref|ZP_02362474.1| Putative DNA-binding protein HU-alpha, HupA [Burkholderia
oklahomensis C6786]
Length = 90
Score = 104 bits (259), Expect = 6e-21, Method: Composition-based stats.
Identities = 38/91 (41%), Positives = 49/91 (53%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI IA + L+ + ++ LL +T L GG V + GFG+F V KRAAR
Sbjct: 1 MNKTELIEHIA-RQADLSKSSAARALDALLGGVTNTLQRGGAVTLVGFGTFEVGKRAARG 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P I + VP FRAGK LK+ LN
Sbjct: 60 GRDPRTGAAIEIRAANVPKFRAGKALKDALN 90
>gi|83592888|ref|YP_426640.1| histone-like DNA-binding protein [Rhodospirillum rubrum ATCC
11170]
gi|83575802|gb|ABC22353.1| Histone-like DNA-binding protein [Rhodospirillum rubrum ATCC
11170]
Length = 91
Score = 104 bits (259), Expect = 6e-21, Method: Composition-based stats.
Identities = 32/92 (34%), Positives = 51/92 (55%), Gaps = 1/92 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI +A + L+ D K V+ + + +T AL + V + GFG+F+V KRAA
Sbjct: 1 MNKNDLIAAVAD-SAGLSKADAAKAVDGVFDAITGALKDDQEVRLVGFGTFAVTKRAATE 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P + I++ P F+ GK LK+ +N+
Sbjct: 60 GRNPRTGETIAIPASKQPKFKPGKGLKDAVNA 91
>gi|296314009|ref|ZP_06863950.1| DNA-binding protein HU-beta [Neisseria polysaccharea ATCC 43768]
gi|296839379|gb|EFH23317.1| DNA-binding protein HU-beta [Neisseria polysaccharea ATCC 43768]
Length = 91
Score = 104 bits (259), Expect = 6e-21, Method: Composition-based stats.
Identities = 33/91 (36%), Positives = 49/91 (53%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI IA + +LN +D + V+ + +TQ L +G V + GFGSF + A R
Sbjct: 1 MNKSELIQAIADE-AELNKRDAAEFVDAFVSVVTQTLKDGKDVTLVGFGSFHAAQSAERK 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + + + + P F AGK LK+ +N
Sbjct: 60 GRNPKTGEPLIIAARKTPKFHAGKALKDAVN 90
>gi|192361790|ref|YP_001982469.1| DNA-binding protein HU superfamily [Cellvibrio japonicus Ueda107]
gi|190687955|gb|ACE85633.1| DNA-binding protein HU superfamily [Cellvibrio japonicus Ueda107]
Length = 90
Score = 104 bits (259), Expect = 6e-21, Method: Composition-based stats.
Identities = 34/91 (37%), Positives = 53/91 (58%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI IA + + + ++ ++E +T AL NG V + GFG+F+V++RAAR
Sbjct: 1 MNKTELIEAIAA-SADIPKAAAGRALDAVVESITGALKNGDSVVLVGFGTFAVKERAART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + I + VP F+AGK LK+ +N
Sbjct: 60 GRNPQTGEEIKIAAAKVPGFKAGKALKDAVN 90
>gi|39997696|ref|NP_953647.1| DNA-binding protein HU [Geobacter sulfurreducens PCA]
gi|39984588|gb|AAR35974.1| DNA-binding protein HU [Geobacter sulfurreducens PCA]
gi|298506629|gb|ADI85352.1| integration host factor, beta subunit [Geobacter sulfurreducens
KN400]
Length = 96
Score = 104 bits (259), Expect = 6e-21, Method: Composition-based stats.
Identities = 42/95 (44%), Positives = 64/95 (67%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS L+ +A+KN L +D E +VN++ + + AL +G +VEIRGFGSF+VR+R AR
Sbjct: 1 MTKSELVEMLAEKNSWLTRKDSEMVVNIVFDSIADALKSGEKVEIRGFGSFTVRERGARE 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDS 95
AR P + ++ + K PFF+ GK L+ER+N ++
Sbjct: 61 ARNPKSGAIVKIPAKKTPFFKTGKELRERVNHENA 95
>gi|302879154|ref|YP_003847718.1| integration host factor, beta subunit [Gallionella
capsiferriformans ES-2]
gi|302581943|gb|ADL55954.1| integration host factor, beta subunit [Gallionella
capsiferriformans ES-2]
Length = 97
Score = 104 bits (259), Expect = 6e-21, Method: Composition-based stats.
Identities = 39/92 (42%), Positives = 57/92 (61%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M +S LI +A K P+L D++ V +L+EM++ LA G R+EIRGFGSF + R R
Sbjct: 1 MTRSELIAQLAAKFPQLTNSDIDMAVRTILDEMSRTLARGNRIEIRGFGSFGLNHRPPRK 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P + + V K VP F+ GK L+ER+++
Sbjct: 61 GRNPKSGVNVMVPAKYVPHFKTGKELRERVDA 92
>gi|253576405|ref|ZP_04853735.1| histone family protein DNA-binding protein [Paenibacillus sp.
oral taxon 786 str. D14]
gi|251844298|gb|EES72316.1| histone family protein DNA-binding protein [Paenibacillus sp.
oral taxon 786 str. D14]
Length = 90
Score = 104 bits (259), Expect = 6e-21, Method: Composition-based stats.
Identities = 33/91 (36%), Positives = 55/91 (60%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI +A+ +L+ +D K V+ + + ++ AL NG +V++ GFG+F VR+R+AR
Sbjct: 1 MNKSDLIAQVAEST-ELSKKDATKAVDAVFDAISTALQNGDKVQLVGFGNFEVRERSARK 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + I + +P F+ GK LK+ +
Sbjct: 60 GRNPQTGEEIEIPASKIPAFKPGKALKDGIK 90
>gi|167562417|ref|ZP_02355333.1| Putative DNA-binding protein HU-alpha, HupA [Burkholderia
oklahomensis EO147]
Length = 90
Score = 104 bits (259), Expect = 6e-21, Method: Composition-based stats.
Identities = 38/91 (41%), Positives = 49/91 (53%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI IA + L+ + ++ LL +T L GG V + GFG+F V KRAAR
Sbjct: 1 MNKTELIEHIA-RQADLSKSSAARALDALLGGVTNTLQQGGAVTLVGFGTFEVGKRAARG 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P I + VP FRAGK LK+ LN
Sbjct: 60 GRDPRTGAAIEIRAANVPKFRAGKALKDALN 90
>gi|120554755|ref|YP_959106.1| histone family protein DNA-binding protein [Marinobacter
aquaeolei VT8]
gi|120324604|gb|ABM18919.1| bacterial nucleoid protein HU beta subunit [Marinobacter
aquaeolei VT8]
gi|311695073|gb|ADP97946.1| histone-like bacterial DNA-binding protein [marine bacterium
HP15]
Length = 90
Score = 103 bits (258), Expect = 6e-21, Method: Composition-based stats.
Identities = 33/91 (36%), Positives = 51/91 (56%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI IA+ + ++ + ++ + +T AL G +V + GFG+FSV++RAAR
Sbjct: 1 MNKSELIDAIAE-SADISKAAAGRALDAMTNSITGALKKGDQVTLIGFGTFSVKERAART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P I + VP F+AGK LK+ +
Sbjct: 60 GRNPQTGAEIKIPASKVPGFKAGKALKDAVK 90
>gi|317120952|ref|YP_004100955.1| bacterial nucleoid protein Hbs [Thermaerobacter marianensis DSM
12885]
gi|315590932|gb|ADU50228.1| bacterial nucleoid protein Hbs [Thermaerobacter marianensis DSM
12885]
Length = 90
Score = 103 bits (258), Expect = 6e-21, Method: Composition-based stats.
Identities = 37/91 (40%), Positives = 54/91 (59%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K L+ IA+K LN +D EK VN +E +++ALA G +V + GFG+F VR R AR
Sbjct: 1 MNKPELVNAIAEKT-GLNRKDSEKAVNAFVESISEALAKGEKVSLVGFGTFEVRTRQART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + +++ VP F+ GK L+E +
Sbjct: 60 GRNPRTGQTLTIPAAKVPAFKPGKQLREVVK 90
>gi|254502221|ref|ZP_05114372.1| DNA-binding protein HU [Labrenzia alexandrii DFL-11]
gi|222438292|gb|EEE44971.1| DNA-binding protein HU [Labrenzia alexandrii DFL-11]
Length = 91
Score = 103 bits (258), Expect = 6e-21, Method: Composition-based stats.
Identities = 35/92 (38%), Positives = 50/92 (54%), Gaps = 1/92 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI +A+K L + V+ E +T+ L GG V I GFG+F+V +RAA
Sbjct: 1 MNKNDLIAAVAEKT-GLTKAQAGEAVDASFEAVTETLKGGGEVRIIGFGNFTVSERAATE 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P + I + P F+AGK LK+ +NS
Sbjct: 60 GRNPRTGETIQIPASKTPKFKAGKGLKDAVNS 91
>gi|121997401|ref|YP_001002188.1| histone family protein DNA-binding protein [Halorhodospira
halophila SL1]
gi|121588806|gb|ABM61386.1| histone family protein DNA-binding protein [Halorhodospira
halophila SL1]
Length = 90
Score = 103 bits (258), Expect = 6e-21, Method: Composition-based stats.
Identities = 35/91 (38%), Positives = 53/91 (58%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI +A + L+ + V+ ++E +T AL G +V + GFG+F+VR+RAAR
Sbjct: 1 MNKSELIEAVAD-SADLSKAAAARAVDAMVESVTDALREGDQVTLVGFGTFTVRERAART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + I + VP F+ GK LK+ +N
Sbjct: 60 GRNPRTGESIDIPASKVPGFKPGKALKDAIN 90
>gi|254499149|ref|ZP_05111836.1| conserved hypothetical protein [Legionella drancourtii LLAP12]
gi|254351628|gb|EET10476.1| conserved hypothetical protein [Legionella drancourtii LLAP12]
Length = 92
Score = 103 bits (258), Expect = 7e-21, Method: Composition-based stats.
Identities = 37/90 (41%), Positives = 49/90 (54%), Gaps = 1/90 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS L+ IA L D +++ +T AL +G +V I GFGSFS R+AR
Sbjct: 1 MNKSELVDAIA-SGSGLTKADASRVLETFTSTITDALKSGDQVVIPGFGSFSTGNRSART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P KVI ++ V F+AGKNLKE +
Sbjct: 60 GRNPQTGKVIEIKASRVAKFKAGKNLKEAV 89
>gi|49475383|ref|YP_033424.1| DNA-binding protein [Bartonella henselae str. Houston-1]
gi|48727706|gb|AAT46133.1| Hu-like protein [Bartonella henselae]
gi|49238189|emb|CAF27399.1| DNA-binding protein [Bartonella henselae str. Houston-1]
Length = 91
Score = 103 bits (258), Expect = 7e-21, Method: Composition-based stats.
Identities = 36/92 (39%), Positives = 54/92 (58%), Gaps = 1/92 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS L+ ++A+K ++ +V+ + +T+ALA+GG V + GFGSF V RAA
Sbjct: 1 MNKSELVSSVAEK-AGVSKAQAGSVVDAFIASVTEALASGGDVRLPGFGSFEVSHRAATK 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P I++ + VP F AGK+LKE +N
Sbjct: 60 GRNPSTGAEINIPARSVPKFSAGKSLKEAVNK 91
>gi|260893900|ref|YP_003239997.1| histone family protein DNA-binding protein [Ammonifex degensii
KC4]
gi|260866041|gb|ACX53147.1| histone family protein DNA-binding protein [Ammonifex degensii
KC4]
Length = 95
Score = 103 bits (258), Expect = 7e-21, Method: Composition-based stats.
Identities = 37/90 (41%), Positives = 54/90 (60%), Gaps = 1/90 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS L+ +A+K ++ +D EK V + + + +ALA G +V++ GFG+F VR+RAAR
Sbjct: 1 MNKSDLVAQVAEK-AEMTKKDAEKAVTAVFDAIAEALARGDKVQLVGFGTFEVRERAARK 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P I + VP FRAGK LK +
Sbjct: 60 GRNPQTGAEIEIAACKVPVFRAGKALKAAV 89
>gi|224826390|ref|ZP_03699492.1| integration host factor, beta subunit [Lutiella nitroferrum 2002]
gi|224601491|gb|EEG07672.1| integration host factor, beta subunit [Lutiella nitroferrum 2002]
Length = 104
Score = 103 bits (258), Expect = 7e-21, Method: Composition-based stats.
Identities = 43/95 (45%), Positives = 60/95 (63%), Gaps = 4/95 (4%)
Query: 1 MIKSSLI----GTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKR 56
M KS LI +A++N +L Y+D E V +L+ M +LA G R+EIRGFGSF + R
Sbjct: 1 MTKSELIARLAEHLAERNSQLVYKDAELAVKTILDAMAGSLATGQRIEIRGFGSFDLNYR 60
Query: 57 AARLARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R+ R P + +SV EK VP F+AGK L+ER++
Sbjct: 61 PPRVGRNPKSGSSVSVPEKFVPHFKAGKELRERVD 95
>gi|152968975|ref|YP_001334084.1| transcriptional regulator HU subunit beta [Klebsiella pneumoniae
subsp. pneumoniae MGH 78578]
gi|206578345|ref|YP_002240080.1| DNA-binding protein HU, beta subunit [Klebsiella pneumoniae 342]
gi|238893389|ref|YP_002918123.1| transcriptional regulator HU subunit beta [Klebsiella pneumoniae
NTUH-K2044]
gi|261341041|ref|ZP_05968899.1| DNA-binding protein HU-beta [Enterobacter cancerogenus ATCC
35316]
gi|262042476|ref|ZP_06015635.1| DNA-binding protein HU-beta [Klebsiella pneumoniae subsp.
rhinoscleromatis ATCC 13884]
gi|288936831|ref|YP_003440890.1| histone family protein DNA-binding protein [Klebsiella variicola
At-22]
gi|290510113|ref|ZP_06549483.1| transcriptional regulator HU subunit alpha [Klebsiella sp.
1_1_55]
gi|296101562|ref|YP_003611708.1| DNA-binding protein HU-beta [Enterobacter cloacae subsp. cloacae
ATCC 13047]
gi|311280663|ref|YP_003942894.1| histone family protein DNA-binding protein [Enterobacter cloacae
SCF1]
gi|330011536|ref|ZP_08307122.1| DNA-binding protein HU-beta [Klebsiella sp. MS 92-3]
gi|150953824|gb|ABR75854.1| DNA-binding protein HU-beta, NS1 (HU-1) [Klebsiella pneumoniae
subsp. pneumoniae MGH 78578]
gi|206567403|gb|ACI09179.1| DNA-binding protein HU, beta subunit [Klebsiella pneumoniae 342]
gi|238545705|dbj|BAH62056.1| DNA-binding protein HU-beta [Klebsiella pneumoniae subsp.
pneumoniae NTUH-K2044]
gi|259040180|gb|EEW41292.1| DNA-binding protein HU-beta [Klebsiella pneumoniae subsp.
rhinoscleromatis ATCC 13884]
gi|288316906|gb|EFC55844.1| DNA-binding protein HU-beta [Enterobacter cancerogenus ATCC
35316]
gi|288891540|gb|ADC59858.1| histone family protein DNA-binding protein [Klebsiella variicola
At-22]
gi|289776829|gb|EFD84827.1| transcriptional regulator HU subunit alpha [Klebsiella sp.
1_1_55]
gi|295056021|gb|ADF60759.1| DNA-binding protein HU-beta [Enterobacter cloacae subsp. cloacae
ATCC 13047]
gi|308749858|gb|ADO49610.1| histone family protein DNA-binding protein [Enterobacter cloacae
SCF1]
gi|328534153|gb|EGF60788.1| DNA-binding protein HU-beta [Klebsiella sp. MS 92-3]
Length = 90
Score = 103 bits (258), Expect = 7e-21, Method: Composition-based stats.
Identities = 35/91 (38%), Positives = 53/91 (58%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI IA ++ + ++ L+ +T++L G V + GFG+F+V++RAAR
Sbjct: 1 MNKSQLIDKIAA-GADISKAAAGRALDALIASVTESLQAGDDVALVGFGTFAVKERAART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P K I++ VP FRAGK LK+ +N
Sbjct: 60 GRNPQTGKEITIAAAKVPGFRAGKALKDAVN 90
>gi|114775527|ref|ZP_01451095.1| histone-like protein [Mariprofundus ferrooxydans PV-1]
gi|114553638|gb|EAU56019.1| histone-like protein [Mariprofundus ferrooxydans PV-1]
Length = 90
Score = 103 bits (258), Expect = 7e-21, Method: Composition-based stats.
Identities = 34/91 (37%), Positives = 51/91 (56%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI +A + ++ V+ +L +T +L+ GG V + GFG+FSV RAAR
Sbjct: 1 MNKTDLIDHVA-SSAGMSKTAAGDAVDAVLSGITASLSGGGSVSLVGFGTFSVTARAART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
AR P + I+V P F+ GK LK+ +N
Sbjct: 60 ARNPRTGEAIAVAASNAPKFKPGKALKDAVN 90
>gi|59712365|ref|YP_205141.1| integration host factor (IHF), DNA-binding protein, beta subunit
[Vibrio fischeri ES114]
gi|197334359|ref|YP_002156580.1| integration host factor, beta subunit [Vibrio fischeri MJ11]
gi|75506974|sp|Q5E3Z3|IHFB_VIBF1 RecName: Full=Integration host factor subunit beta;
Short=IHF-beta
gi|226709817|sp|B5FG57|IHFB_VIBFM RecName: Full=Integration host factor subunit beta;
Short=IHF-beta
gi|59480466|gb|AAW86253.1| integration host factor (IHF), DNA-binding protein, beta subunit
[Vibrio fischeri ES114]
gi|197315849|gb|ACH65296.1| integration host factor, beta subunit [Vibrio fischeri MJ11]
Length = 93
Score = 103 bits (258), Expect = 7e-21, Method: Composition-based stats.
Identities = 41/91 (45%), Positives = 55/91 (60%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI + K P+L+ + VE V +LE+M L G R+EIRGFGSFS+ R RL
Sbjct: 1 MTKSELIEQLCSKKPQLSAKQVEDTVKEILEQMATTLEGGDRIEIRGFGSFSLHYREPRL 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + ++ K VP F+ GK L+ER+N
Sbjct: 61 GRNPKTGDKVELDGKFVPHFKPGKELRERVN 91
>gi|1706310|sp|P52681|DBHB_SERMA RecName: Full=DNA-binding protein HU-beta; AltName: Full=HU-1;
AltName: Full=NS1
gi|802008|gb|AAA65988.1| HU beta [Serratia marcescens]
gi|1586263|prf||2203354B heterodimeric HU protein
Length = 90
Score = 103 bits (258), Expect = 7e-21, Method: Composition-based stats.
Identities = 35/91 (38%), Positives = 52/91 (57%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI IA ++ + ++ ++ +T +L G V + GFGSF+VR+R+AR
Sbjct: 1 MNKSQLIDKIAA-GADISKAAAGRALDAVIASVTDSLKAGDDVALVGFGSFTVRERSART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P K I + + VP FRAGK LK+ +N
Sbjct: 60 GRNPQTGKEIKIAARKVPAFRAGKALKDAVN 90
>gi|89095458|ref|ZP_01168369.1| DNA-binding protein HU [Oceanospirillum sp. MED92]
gi|89080288|gb|EAR59549.1| DNA-binding protein HU [Oceanospirillum sp. MED92]
Length = 91
Score = 103 bits (258), Expect = 7e-21, Method: Composition-based stats.
Identities = 36/92 (39%), Positives = 51/92 (55%), Gaps = 1/92 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI IA + + + ++ LE +T AL NG V + GFG+FSV++RAAR
Sbjct: 1 MNKSELIDAIAA-SADIPKAAAGRALDATLEAVTGALQNGDSVALVGFGTFSVKERAART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P K I + +P F+ GK LK+ +N
Sbjct: 60 GRNPQTGKPIEIAAATLPTFKPGKALKDAVNK 91
>gi|326795822|ref|YP_004313642.1| histone family protein DNA-binding protein [Marinomonas
mediterranea MMB-1]
gi|326546586|gb|ADZ91806.1| histone family protein DNA-binding protein [Marinomonas
mediterranea MMB-1]
Length = 90
Score = 103 bits (258), Expect = 7e-21, Method: Composition-based stats.
Identities = 34/91 (37%), Positives = 51/91 (56%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI IA + L+ ++ L+ + +AL G +V + GFG+F V++RAAR
Sbjct: 1 MNKSELIDAIAA-SADLSKAAASNALDATLKTIEEALVKGDQVTLVGFGTFQVKERAART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P I ++ VP F+AGK LK+ +N
Sbjct: 60 GRNPQTGAEIQIKAAKVPSFKAGKGLKDAVN 90
>gi|320156966|ref|YP_004189345.1| DNA-binding protein HU-beta [Vibrio vulnificus MO6-24/O]
gi|319932278|gb|ADV87142.1| DNA-binding protein HU-beta [Vibrio vulnificus MO6-24/O]
Length = 90
Score = 103 bits (258), Expect = 8e-21, Method: Composition-based stats.
Identities = 34/91 (37%), Positives = 53/91 (58%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ L+ +IA N ++ + ++ +E ++ L +G +V + GFG+FSVR RAAR
Sbjct: 1 MNKTQLVESIAA-NADISKASAGRALDAFIEAVSGTLQSGDQVALVGFGTFSVRTRAART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + I + E VP F+AGK LK+ N
Sbjct: 60 GRNPKTGEEIQIAEAKVPSFKAGKALKDACN 90
>gi|189499304|ref|YP_001958774.1| histone family protein DNA-binding protein [Chlorobium
phaeobacteroides BS1]
gi|189494745|gb|ACE03293.1| histone family protein DNA-binding protein [Chlorobium
phaeobacteroides BS1]
Length = 90
Score = 103 bits (258), Expect = 8e-21, Method: Composition-based stats.
Identities = 32/90 (35%), Positives = 49/90 (54%), Gaps = 1/90 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ L+ IA + L D E+ V+ + +T L G + + GFG+FS +RAAR
Sbjct: 1 MSKAELVEKIASQ-AGLTKADAERAVSAFVNVVTAGLKAGDDITLVGFGTFSTGERAARQ 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P + IS+ K V F+AGK L++ +
Sbjct: 60 GRNPQTGETISIAAKKVVKFKAGKALRDEV 89
>gi|163793185|ref|ZP_02187161.1| Histone-like DNA-binding protein [alpha proteobacterium BAL199]
gi|159181831|gb|EDP66343.1| Histone-like DNA-binding protein [alpha proteobacterium BAL199]
Length = 90
Score = 103 bits (258), Expect = 8e-21, Method: Composition-based stats.
Identities = 33/91 (36%), Positives = 49/91 (53%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ L+ +A L+ D K V+ + +E+T L GG V + GFG+FSV RAA
Sbjct: 1 MNKNELVAAVADST-GLSKADSGKAVDAVFDEITGQLKKGGDVRLVGFGTFSVASRAASE 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + I++ P F+ GK LK+ +N
Sbjct: 60 GRNPRTGEKIAIPASKQPKFKPGKGLKDSVN 90
>gi|226953082|ref|ZP_03823546.1| DNA-binding protein HU-beta [Acinetobacter sp. ATCC 27244]
gi|294650671|ref|ZP_06728025.1| DNA-binding protein HU-beta family protein [Acinetobacter
haemolyticus ATCC 19194]
gi|226836174|gb|EEH68557.1| DNA-binding protein HU-beta [Acinetobacter sp. ATCC 27244]
gi|292823462|gb|EFF82311.1| DNA-binding protein HU-beta family protein [Acinetobacter
haemolyticus ATCC 19194]
Length = 90
Score = 103 bits (257), Expect = 9e-21, Method: Composition-based stats.
Identities = 35/90 (38%), Positives = 54/90 (60%), Gaps = 1/90 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI IA+K ++ D K ++ + +T+AL G V + GFG+FSV++RAAR
Sbjct: 1 MNKSELIDAIAEK-GGVSKSDAGKALDATIASITEALKKGDTVTLVGFGTFSVKERAART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P + + ++ VP F+AGK LK+ +
Sbjct: 60 GRNPKTGEELQIKASKVPSFKAGKGLKDSV 89
>gi|149192496|ref|ZP_01870681.1| DNA-binding protein HU-beta [Vibrio shilonii AK1]
gi|148833669|gb|EDL50721.1| DNA-binding protein HU-beta [Vibrio shilonii AK1]
Length = 90
Score = 103 bits (257), Expect = 9e-21, Method: Composition-based stats.
Identities = 35/91 (38%), Positives = 52/91 (57%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ L+ IA+ N L+ + ++ +E ++ L G +V + GFG+FSVR RAAR
Sbjct: 1 MNKTQLVEKIAE-NADLSKASAGRALDAFIEAVSTTLEEGDQVALVGFGTFSVRTRAART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + I + E VP F+AGK LK+ N
Sbjct: 60 GRNPKTGEEIQISEAKVPAFKAGKALKDACN 90
>gi|90416550|ref|ZP_01224481.1| integration host factor beta subunit [marine gamma
proteobacterium HTCC2207]
gi|90331749|gb|EAS46977.1| integration host factor beta subunit [marine gamma
proteobacterium HTCC2207]
Length = 94
Score = 103 bits (257), Expect = 9e-21, Method: Composition-based stats.
Identities = 42/91 (46%), Positives = 54/91 (59%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI I+ +L +DVE V M+LE MT AL R EIRGFGSFS+ RA R+
Sbjct: 1 MTKSELIEKISASQDQLPPKDVELAVRMILERMTHALVTNQRTEIRGFGSFSLHYRAPRV 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + + K VP+F+ GK L+ R+N
Sbjct: 61 GRNPKTGDAVDLSGKYVPYFKPGKELRIRVN 91
>gi|227890888|ref|ZP_04008693.1| non-specific DNA-binding protein HBsu [Lactobacillus salivarius
ATCC 11741]
gi|227867297|gb|EEJ74718.1| non-specific DNA-binding protein HBsu [Lactobacillus salivarius
ATCC 11741]
Length = 100
Score = 103 bits (257), Expect = 9e-21, Method: Composition-based stats.
Identities = 33/90 (36%), Positives = 53/90 (58%), Gaps = 1/90 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K++LI +A+K L +D V+ + E + AL +G +V++ GFG+F VR+RAAR
Sbjct: 12 NKAALIERVAEKT-GLTKKDATVAVDAVFETIQDALVDGEKVQLIGFGNFEVRERAARKG 70
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + I + VP F+ GK+LK+ +
Sbjct: 71 RNPQTGEEIEIPASKVPAFKPGKSLKDAVK 100
>gi|56963393|ref|YP_175124.1| DNA-binding protein HU [Bacillus clausii KSM-K16]
gi|56909636|dbj|BAD64163.1| DNA-binding protein HU [Bacillus clausii KSM-K16]
Length = 91
Score = 103 bits (257), Expect = 9e-21, Method: Composition-based stats.
Identities = 31/92 (33%), Positives = 55/92 (59%), Gaps = 1/92 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI ++++ +++ +D K V+ + +T++L G +V++ GFGSF VR+R+AR
Sbjct: 1 MNKTDLINAVSEQ-AEISKKDASKAVDAVFNGITESLVKGAKVQLVGFGSFEVRERSARK 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P + I + P F+ GK LK+ +N
Sbjct: 60 GRNPQTGEEIEIPATKNPAFKPGKQLKDAVNE 91
>gi|56550597|ref|YP_161663.1| DNA-binding protein HU-beta [Cupriavidus metallidurans CH34]
gi|56410303|emb|CAI30185.1| hypothetical DNA-binding protein HU-beta NS1 [Cupriavidus
metallidurans CH34]
Length = 158
Score = 103 bits (257), Expect = 9e-21, Method: Composition-based stats.
Identities = 30/91 (32%), Positives = 49/91 (53%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI +A+ L E+++N L+ + +A+ G + + GFG+FS +R R+
Sbjct: 15 MTKSELIDAVARGVDGLTKTKAEQVLNATLDAIVEAVGRGETLSLIGFGTFSKGERGERM 74
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
AR P + I VE F+AG+ K+ +N
Sbjct: 75 ARNPRTGEEIRVEAAKTVKFKAGQRFKDAVN 105
>gi|294788548|ref|ZP_06753790.1| DNA-binding protein HU-beta [Simonsiella muelleri ATCC 29453]
gi|294483425|gb|EFG31110.1| DNA-binding protein HU-beta [Simonsiella muelleri ATCC 29453]
Length = 112
Score = 103 bits (257), Expect = 9e-21, Method: Composition-based stats.
Identities = 32/90 (35%), Positives = 47/90 (52%), Gaps = 1/90 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI IA+K+ L D K ++ + L G + + GFGSF+V +RA R
Sbjct: 7 MNKSELIDAIAEKS-GLTKTDAAKALDAFTSVVKDTLQQNGDITLVGFGSFTVAERAERQ 65
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
P ++ I++ VP F+ GK LK+ L
Sbjct: 66 GLNPKTKEPITIPAARVPKFKPGKALKDAL 95
>gi|84387738|ref|ZP_00990754.1| Bacterial nucleoid DNA-binding protein [Vibrio splendidus 12B01]
gi|86148519|ref|ZP_01066807.1| Bacterial nucleoid DNA-binding protein [Vibrio sp. MED222]
gi|148977891|ref|ZP_01814444.1| bacterial nucleoid DNA-binding protein [Vibrionales bacterium
SWAT-3]
gi|84377421|gb|EAP94288.1| Bacterial nucleoid DNA-binding protein [Vibrio splendidus 12B01]
gi|85833710|gb|EAQ51880.1| Bacterial nucleoid DNA-binding protein [Vibrio sp. MED222]
gi|145962837|gb|EDK28109.1| bacterial nucleoid DNA-binding protein [Vibrionales bacterium
SWAT-3]
Length = 90
Score = 103 bits (257), Expect = 9e-21, Method: Composition-based stats.
Identities = 34/91 (37%), Positives = 53/91 (58%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ L+ +IA+ N ++ + ++ +E + L +G +V + GFG+FSVR RAAR
Sbjct: 1 MNKTQLVESIAE-NADISKASAGRALDAFIEAVGTTLQSGDQVALVGFGTFSVRTRAART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + I + E VP F+AGK LK+ N
Sbjct: 60 GRNPKTGEEIQIAEAKVPGFKAGKALKDACN 90
>gi|254785728|ref|YP_003073157.1| DNA-binding protein HU-beta [Teredinibacter turnerae T7901]
gi|239918950|gb|ACR13101.2| DNA-binding protein HU-beta [Teredinibacter turnerae T7901]
Length = 90
Score = 103 bits (257), Expect = 1e-20, Method: Composition-based stats.
Identities = 31/91 (34%), Positives = 50/91 (54%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS L+ IA + ++ + ++ + E + AL G +V + GFG+F V++RAAR
Sbjct: 1 MNKSELVEAIAA-SADISKAAAGRALDAVTESIANALKEGDQVALVGFGTFLVKERAART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P I + +P F+AGK LK+ +N
Sbjct: 60 GRNPQTGDPIEIAAAKIPSFKAGKALKDAVN 90
>gi|308066881|ref|YP_003868486.1| DNA-binding protein HU (DNA-binding protein II) [Paenibacillus
polymyxa E681]
gi|310639519|ref|YP_003944277.1| DNA-binding protein hu-alpha (histone-like protein)
[Paenibacillus polymyxa SC2]
gi|305856160|gb|ADM67948.1| DNA-binding protein HU (DNA-binding protein II) [Paenibacillus
polymyxa E681]
gi|309244469|gb|ADO54036.1| DNA-binding protein HU-alpha (Histone-like protein)
[Paenibacillus polymyxa SC2]
Length = 90
Score = 103 bits (257), Expect = 1e-20, Method: Composition-based stats.
Identities = 40/91 (43%), Positives = 59/91 (64%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI I+ K+ L+ +DVE ++N +L E+T ALA+G +V++ GFG+F RKR++R
Sbjct: 1 MNKTDLINNISSKS-GLSKRDVEAVLNGVLGEITDALASGDKVQLIGFGTFETRKRSSRT 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P I + E VP F+AG LKE +N
Sbjct: 60 GRNPQTGNTIEIPESTVPAFKAGNKLKEAVN 90
>gi|52843149|ref|YP_096948.1| integration host factor beta subunit [Legionella pneumophila
subsp. pneumophila str. Philadelphia 1]
gi|54295794|ref|YP_128209.1| hypothetical protein lpl2884 [Legionella pneumophila str. Lens]
gi|54298959|ref|YP_125328.1| hypothetical protein lpp3026 [Legionella pneumophila str. Paris]
gi|148361296|ref|YP_001252503.1| integration host factor subunit beta [Legionella pneumophila str.
Corby]
gi|296108635|ref|YP_003620336.1| integration host factor beta subunit [Legionella pneumophila
2300/99 Alcoy]
gi|52630260|gb|AAU29001.1| integration host factor beta subunit [Legionella pneumophila
subsp. pneumophila str. Philadelphia 1]
gi|53752744|emb|CAH14179.1| hypothetical protein lpp3026 [Legionella pneumophila str. Paris]
gi|53755626|emb|CAH17128.1| hypothetical protein lpl2884 [Legionella pneumophila str. Lens]
gi|148283069|gb|ABQ57157.1| integration host factor beta subunit [Legionella pneumophila str.
Corby]
gi|295650537|gb|ADG26384.1| integration host factor beta subunit [Legionella pneumophila
2300/99 Alcoy]
Length = 103
Score = 103 bits (257), Expect = 1e-20, Method: Composition-based stats.
Identities = 42/96 (43%), Positives = 57/96 (59%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
MIKS LI IA + L + V +N +LE M++AL +G R+EIRGFGSFS+ R R
Sbjct: 1 MIKSELIEHIAARMTHLTEKQVADGINRILELMSEALIHGQRIEIRGFGSFSLHYRPPRN 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDST 96
A P + + E K P F+ GK L+ER+NS +
Sbjct: 61 AHNPKTGEKVVTEAKYSPHFKPGKELRERVNSSRAK 96
>gi|52080788|ref|YP_079579.1| non-specific DNA-binding protein HBsu signal recognition
particle-like (SRP) component [Bacillus licheniformis
ATCC 14580]
gi|52786158|ref|YP_091987.1| Hbs [Bacillus licheniformis ATCC 14580]
gi|319645255|ref|ZP_07999488.1| DNA-binding protein HU 1 [Bacillus sp. BT1B_CT2]
gi|52003999|gb|AAU23941.1| non-specific DNA-binding protein HBsu signal recognition
particle-like (SRP) component [Bacillus licheniformis
ATCC 14580]
gi|52348660|gb|AAU41294.1| Hbs [Bacillus licheniformis ATCC 14580]
gi|317393064|gb|EFV73858.1| DNA-binding protein HU 1 [Bacillus sp. BT1B_CT2]
Length = 92
Score = 103 bits (257), Expect = 1e-20, Method: Composition-based stats.
Identities = 32/90 (35%), Positives = 55/90 (61%), Gaps = 1/90 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI +A+ + +L+ +D K V+ + + + AL NG ++++ GFG+F VR+R+AR
Sbjct: 1 MNKTELINAVAEAS-ELSKKDATKAVDSVFDTILDALKNGEKIQLIGFGNFEVRERSARK 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P + I + VP F+ GK LK+ +
Sbjct: 60 GRNPQTGEEIEIPASKVPAFKPGKALKDAV 89
>gi|311030279|ref|ZP_07708369.1| DNA-binding protein HU [Bacillus sp. m3-13]
Length = 90
Score = 103 bits (257), Expect = 1e-20, Method: Composition-based stats.
Identities = 34/91 (37%), Positives = 55/91 (60%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI +A+ + +L+ +D K V+ + + + AL NG +V++ GFG+F VR+RAAR
Sbjct: 1 MNKTDLINAVAEAS-ELSKKDATKAVDAVFDTILDALKNGDKVQLIGFGNFEVRERAARK 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + I + VP F+ GK LK+ +
Sbjct: 60 GRNPQTGEEIEIAASKVPAFKPGKALKDAVK 90
>gi|126641682|ref|YP_001084666.1| DNA-binding protein HU-beta [Acinetobacter baumannii ATCC 17978]
gi|169633492|ref|YP_001707228.1| DNA-binding protein HU-beta [Acinetobacter baumannii SDF]
gi|169796090|ref|YP_001713883.1| DNA-binding protein HU-beta [Acinetobacter baumannii AYE]
gi|184157983|ref|YP_001846322.1| nucleoid DNA-binding protein [Acinetobacter baumannii ACICU]
gi|213157177|ref|YP_002319222.1| DNA-binding protein HU [Acinetobacter baumannii AB0057]
gi|215483545|ref|YP_002325764.1| DNA-binding protein HU-beta (NS1) (HU-1) [Acinetobacter baumannii
AB307-0294]
gi|239501896|ref|ZP_04661206.1| DNA-binding protein HU-beta (NS1) (HU-1) [Acinetobacter baumannii
AB900]
gi|260550155|ref|ZP_05824369.1| nucleoid DNA-binding protein [Acinetobacter sp. RUH2624]
gi|260555139|ref|ZP_05827360.1| integration host factor, beta subunit [Acinetobacter baumannii
ATCC 19606]
gi|262278966|ref|ZP_06056751.1| DNA-binding protein HU-beta [Acinetobacter calcoaceticus RUH2202]
gi|293608200|ref|ZP_06690503.1| conserved hypothetical protein [Acinetobacter sp. SH024]
gi|299770349|ref|YP_003732375.1| DNA-binding protein HU-beta (NS1) (HU-1) [Acinetobacter sp. DR1]
gi|301347498|ref|ZP_07228239.1| DNA-binding protein HU-beta (NS1) (HU-1) [Acinetobacter baumannii
AB056]
gi|301511278|ref|ZP_07236515.1| DNA-binding protein HU-beta (NS1) (HU-1) [Acinetobacter baumannii
AB058]
gi|301597453|ref|ZP_07242461.1| DNA-binding protein HU-beta (NS1) (HU-1) [Acinetobacter baumannii
AB059]
gi|332851741|ref|ZP_08433666.1| DNA-binding protein HU-beta [Acinetobacter baumannii 6013150]
gi|332865884|ref|ZP_08436664.1| DNA-binding protein HU-beta [Acinetobacter baumannii 6013113]
gi|332874442|ref|ZP_08442345.1| DNA-binding protein HU-beta [Acinetobacter baumannii 6014059]
gi|126387566|gb|ABO12064.1| DNA-binding protein HU-beta [Acinetobacter baumannii ATCC 17978]
gi|169149017|emb|CAM86894.1| DNA-binding protein HU-beta [Acinetobacter baumannii AYE]
gi|169152284|emb|CAP01194.1| DNA-binding protein HU-beta [Acinetobacter baumannii]
gi|183209577|gb|ACC56975.1| Bacterial nucleoid DNA-binding protein [Acinetobacter baumannii
ACICU]
gi|213056337|gb|ACJ41239.1| DNA-binding protein HU [Acinetobacter baumannii AB0057]
gi|213986875|gb|ACJ57174.1| DNA-binding protein HU-beta (NS1) (HU-1) [Acinetobacter baumannii
AB307-0294]
gi|260406910|gb|EEX00389.1| nucleoid DNA-binding protein [Acinetobacter sp. RUH2624]
gi|260411681|gb|EEX04978.1| integration host factor, beta subunit [Acinetobacter baumannii
ATCC 19606]
gi|262259317|gb|EEY78050.1| DNA-binding protein HU-beta [Acinetobacter calcoaceticus RUH2202]
gi|292828773|gb|EFF87135.1| conserved hypothetical protein [Acinetobacter sp. SH024]
gi|298700437|gb|ADI91002.1| DNA-binding protein HU-beta (NS1) (HU-1) [Acinetobacter sp. DR1]
gi|322508301|gb|ADX03755.1| hupB [Acinetobacter baumannii 1656-2]
gi|323517927|gb|ADX92308.1| nucleoid DNA-binding protein [Acinetobacter baumannii
TCDC-AB0715]
gi|325122069|gb|ADY81592.1| DNA-binding protein HU-beta [Acinetobacter calcoaceticus PHEA-2]
gi|332729748|gb|EGJ61083.1| DNA-binding protein HU-beta [Acinetobacter baumannii 6013150]
gi|332734934|gb|EGJ66020.1| DNA-binding protein HU-beta [Acinetobacter baumannii 6013113]
gi|332737286|gb|EGJ68210.1| DNA-binding protein HU-beta [Acinetobacter baumannii 6014059]
Length = 90
Score = 103 bits (257), Expect = 1e-20, Method: Composition-based stats.
Identities = 35/90 (38%), Positives = 54/90 (60%), Gaps = 1/90 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI IA+K ++ D K ++ + +T+AL G V + GFG+FSV++RAAR
Sbjct: 1 MNKSELIDAIAEK-GGVSKTDAGKALDATIASITEALKKGDTVTLVGFGTFSVKERAART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P + + ++ VP F+AGK LK+ +
Sbjct: 60 GRNPKTGEELQIKATKVPSFKAGKGLKDSV 89
>gi|294141765|ref|YP_003557743.1| HU family DNA-binding protein [Shewanella violacea DSS12]
gi|293328234|dbj|BAJ02965.1| DNA-binding protein, HU family [Shewanella violacea DSS12]
Length = 90
Score = 103 bits (257), Expect = 1e-20, Method: Composition-based stats.
Identities = 30/91 (32%), Positives = 48/91 (52%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI IA ++ + ++ + +T L +G ++ + GFG+F VR+RA R
Sbjct: 1 MNKSELIEKIA-SGADISKAAAGRALDSFIGAVTDGLKDGDKISLVGFGTFEVRQRAERT 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P I + +P F+AGK LK+ +N
Sbjct: 60 GRNPQTGAEIKIAAANIPAFKAGKALKDAVN 90
>gi|209964552|ref|YP_002297467.1| DNA-binding protein HupA [Rhodospirillum centenum SW]
gi|209958018|gb|ACI98654.1| DNA-binding protein HupA [Rhodospirillum centenum SW]
Length = 90
Score = 103 bits (257), Expect = 1e-20, Method: Composition-based stats.
Identities = 34/91 (37%), Positives = 50/91 (54%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ L+ +A+ L+ D K V+ + + +T AL G V + GFG+F V +RAA
Sbjct: 1 MNKNDLVAAVAEA-AGLSKADANKAVDAVFDGITSALTKGDEVRLVGFGTFGVAERAASE 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + IS+ P F+AGK LK+ LN
Sbjct: 60 GRNPRTGEKISIPASKQPKFKAGKGLKDALN 90
>gi|149183707|ref|ZP_01862118.1| non-specific DNA-binding protein HBsu; signal recognition
particle-like (SRP) component [Bacillus sp. SG-1]
gi|148848589|gb|EDL62828.1| non-specific DNA-binding protein HBsu; signal recognition
particle-like (SRP) component [Bacillus sp. SG-1]
Length = 90
Score = 103 bits (257), Expect = 1e-20, Method: Composition-based stats.
Identities = 36/91 (39%), Positives = 55/91 (60%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI +A+ +L+ +D K V+ + E + ALANG +V++ GFG+F VR+RAAR
Sbjct: 1 MNKTELINAVAEA-AELSKKDATKAVDAVFESIQDALANGDKVQLIGFGNFEVRERAARK 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + I + VP F+ GK LK+ +
Sbjct: 60 GRNPQTGEEIEISASKVPAFKPGKALKDAVK 90
>gi|307942066|ref|ZP_07657417.1| DNA-binding protein HRL18 [Roseibium sp. TrichSKD4]
gi|307774352|gb|EFO33562.1| DNA-binding protein HRL18 [Roseibium sp. TrichSKD4]
Length = 91
Score = 103 bits (257), Expect = 1e-20, Method: Composition-based stats.
Identities = 34/92 (36%), Positives = 48/92 (52%), Gaps = 1/92 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI +A+K L + V+ E +T+ L G V I GFG+FSV RAA
Sbjct: 1 MNKNDLIAAVAEKT-GLTKAQAGEAVDATFEAVTETLKAGDEVRIIGFGNFSVSARAATE 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P + I + P F+AGK LK+ +N+
Sbjct: 60 GRNPRTGETIQIPASKTPKFKAGKGLKDAVNA 91
>gi|83588958|ref|YP_428967.1| nucleoid protein Hbs [Moorella thermoacetica ATCC 39073]
gi|83571872|gb|ABC18424.1| bacterial nucleoid protein Hbs [Moorella thermoacetica ATCC
39073]
Length = 91
Score = 103 bits (257), Expect = 1e-20, Method: Composition-based stats.
Identities = 36/90 (40%), Positives = 57/90 (63%), Gaps = 1/90 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K LI ++A+K L +D EK+VN +L + +ALA G +V++ GFG+F +++RAAR+
Sbjct: 1 MNKMDLIASVAEKT-DLTKKDAEKVVNAVLASIEEALAQGEKVQLVGFGTFEIKERAARV 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P + I + P F+AGK LK+ +
Sbjct: 60 GRNPRTGEEIQIAATRAPVFKAGKALKDAV 89
>gi|209695658|ref|YP_002263587.1| integration host factor subunit beta [Aliivibrio salmonicida
LFI1238]
gi|226709768|sp|B6EIY1|IHFB_ALISL RecName: Full=Integration host factor subunit beta;
Short=IHF-beta
gi|208009610|emb|CAQ79906.1| integration host factor beta-subunit [Aliivibrio salmonicida
LFI1238]
Length = 93
Score = 102 bits (256), Expect = 1e-20, Method: Composition-based stats.
Identities = 41/91 (45%), Positives = 55/91 (60%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI + K P+L+ + VE V +LE+M L G R+EIRGFGSFS+ R RL
Sbjct: 1 MTKSELIEQLCSKKPQLSAKQVEDTVKEVLEQMATTLEGGDRIEIRGFGSFSLHYREPRL 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + ++ K VP F+ GK L+ER+N
Sbjct: 61 GRNPKTGDKVELDGKFVPHFKPGKELRERVN 91
>gi|144901346|emb|CAM78210.1| DNA-binding protein HU [Magnetospirillum gryphiswaldense MSR-1]
Length = 92
Score = 102 bits (256), Expect = 1e-20, Method: Composition-based stats.
Identities = 37/93 (39%), Positives = 48/93 (51%), Gaps = 1/93 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ L+ +A+ L D EK V+ + E +T AL G V + GFGSFSV RAA
Sbjct: 1 MNKADLVSRVAE-LSGLTKADSEKAVDGVFEAITAALKGGDEVRLVGFGSFSVASRAASE 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSP 93
R P + I + P F AGK LKE +N
Sbjct: 60 GRNPRTGEKIQIPASKQPKFSAGKGLKEAVNGK 92
>gi|295398952|ref|ZP_06808934.1| histone family protein DNA-binding protein [Geobacillus
thermoglucosidasius C56-YS93]
gi|312110441|ref|YP_003988757.1| histone family protein DNA-binding protein [Geobacillus sp.
Y4.1MC1]
gi|294978418|gb|EFG54014.1| histone family protein DNA-binding protein [Geobacillus
thermoglucosidasius C56-YS93]
gi|311215542|gb|ADP74146.1| histone family protein DNA-binding protein [Geobacillus sp.
Y4.1MC1]
gi|227370|prf||1702428A DNA binding protein HU
Length = 90
Score = 102 bits (256), Expect = 1e-20, Method: Composition-based stats.
Identities = 35/91 (38%), Positives = 55/91 (60%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI T+A+ L+ +D K V+ + E +T+AL G +V++ GFG+F VR+RAAR
Sbjct: 1 MNKTELINTVAE-ISGLSKKDATKAVDAVFESITEALKKGDKVQLIGFGNFEVRERAARK 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + + + VP F+ GK LK+ +
Sbjct: 60 GRNPQTGEEMEIPASKVPAFKPGKALKDAVK 90
>gi|251792147|ref|YP_003006867.1| integration host factor subunit beta [Aggregatibacter aphrophilus
NJ8700]
gi|247533534|gb|ACS96780.1| integration host factor, beta subunit [Aggregatibacter
aphrophilus NJ8700]
Length = 94
Score = 102 bits (256), Expect = 1e-20, Method: Composition-based stats.
Identities = 39/91 (42%), Positives = 60/91 (65%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI + +KN + + VE+ V +LE+M+ L +G R+E+RGFGSFS+ R R+
Sbjct: 1 MTKSELIELLVQKNSNIPVKHVEEAVKAILEQMSYVLESGERIEVRGFGSFSLHCRQPRI 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + + +E K VP+F+AGK L+ER++
Sbjct: 61 GRNPKTGEQVKLEAKCVPYFKAGKELRERVD 91
>gi|261868287|ref|YP_003256209.1| integration host factor subunit beta [Aggregatibacter
actinomycetemcomitans D11S-1]
gi|293390072|ref|ZP_06634406.1| integration host factor, beta subunit [Aggregatibacter
actinomycetemcomitans D7S-1]
gi|261413619|gb|ACX82990.1| integration host factor, beta subunit [Aggregatibacter
actinomycetemcomitans D11S-1]
gi|290950606|gb|EFE00725.1| integration host factor, beta subunit [Aggregatibacter
actinomycetemcomitans D7S-1]
Length = 95
Score = 102 bits (256), Expect = 1e-20, Method: Composition-based stats.
Identities = 38/91 (41%), Positives = 60/91 (65%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI + +KN + + VE+ V +LE+M+ L +G R+E+RGFGSFS+ R R+
Sbjct: 1 MTKSELIELLVQKNSNIPVKHVEEAVKAILEQMSYVLEHGERIEVRGFGSFSLHCRQPRI 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + + ++ K VP+F+AGK L+ER++
Sbjct: 61 GRNPKTGEQVKLDAKCVPYFKAGKELRERVD 91
>gi|148550652|ref|YP_001260091.1| histone family protein DNA-binding protein [Sphingomonas wittichii
RW1]
gi|148503071|gb|ABQ71324.1| histone family protein DNA-binding protein [Sphingomonas wittichii
RW1]
Length = 134
Score = 102 bits (256), Expect = 1e-20, Method: Composition-based stats.
Identities = 38/90 (42%), Positives = 57/90 (63%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M++S L+ + K+NP+L+ Q++EKIV++ E + LA GGRVE+RGFG+F R AR
Sbjct: 17 MVRSELVALLGKENPELSAQEIEKIVDLFFEAVVDQLAAGGRVELRGFGAFLTRLHEART 76
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P + + V K F+ GK ++ERL
Sbjct: 77 GRNPRSGLAVPVPAKRSVHFKPGKAMRERL 106
>gi|257793014|ref|YP_003186413.1| histone family protein DNA-binding protein [Alicyclobacillus
acidocaldarius subsp. acidocaldarius DSM 446]
gi|257479706|gb|ACV60024.1| histone family protein DNA-binding protein [Alicyclobacillus
acidocaldarius subsp. acidocaldarius DSM 446]
Length = 91
Score = 102 bits (256), Expect = 1e-20, Method: Composition-based stats.
Identities = 32/90 (35%), Positives = 54/90 (60%), Gaps = 1/90 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K LI A++ L+ +D E ++N L + + + + +G +V+I GFG+F +R+RAAR
Sbjct: 1 MNKRDLIRKTAEET-GLSQKDCEAVINTLFDTIRKTVESGEKVQIIGFGTFELRERAART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
AR P + + V + VP F+ G LK+ +
Sbjct: 60 ARNPRTGEAVEVPARRVPAFKPGAELKQAV 89
>gi|218886875|ref|YP_002436196.1| histone family protein DNA-binding protein [Desulfovibrio
vulgaris str. 'Miyazaki F']
gi|218757829|gb|ACL08728.1| histone family protein DNA-binding protein [Desulfovibrio
vulgaris str. 'Miyazaki F']
Length = 91
Score = 102 bits (256), Expect = 1e-20, Method: Composition-based stats.
Identities = 36/91 (39%), Positives = 52/91 (57%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS L+ +A+++ +L +D +VN + + AL G RVEIRGFGSF ++
Sbjct: 1 MNKSELVRALAEEH-ELPVEDATVVVNTFFDCVRDALLEGDRVEIRGFGSFKIKGYRGYK 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P ++V K +P FRAGK LK+ LN
Sbjct: 60 GRNPKTGDSVAVPPKRLPVFRAGKELKDILN 90
>gi|262372481|ref|ZP_06065760.1| integration host factor, beta subunit [Acinetobacter junii SH205]
gi|262312506|gb|EEY93591.1| integration host factor, beta subunit [Acinetobacter junii SH205]
Length = 100
Score = 102 bits (256), Expect = 1e-20, Method: Composition-based stats.
Identities = 41/91 (45%), Positives = 57/91 (62%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
KS LI IA KNP L VE V +++++M +AL++G R+EIRGFGSF++ R RL
Sbjct: 7 NKSDLIERIALKNPHLAEPLVEDAVKIMIDQMIEALSSGDRIEIRGFGSFALHHREPRLG 66
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P K + V K VP F+ GK L++ +N
Sbjct: 67 RNPKTGKAVDVAAKAVPHFKPGKALRDAVNE 97
>gi|228900190|ref|ZP_04064422.1| DNA-binding protein HU [Bacillus thuringiensis IBL 4222]
gi|228907242|ref|ZP_04071102.1| DNA-binding protein HU [Bacillus thuringiensis IBL 200]
gi|228914185|ref|ZP_04077801.1| DNA-binding protein HU [Bacillus thuringiensis serovar pulsiensis
BGSC 4CC1]
gi|228926640|ref|ZP_04089709.1| DNA-binding protein HU [Bacillus thuringiensis serovar
pondicheriensis BGSC 4BA1]
gi|228945209|ref|ZP_04107565.1| DNA-binding protein HU [Bacillus thuringiensis serovar monterrey
BGSC 4AJ1]
gi|228964584|ref|ZP_04125693.1| DNA-binding protein HU [Bacillus thuringiensis serovar sotto str.
T04001]
gi|228971603|ref|ZP_04132226.1| DNA-binding protein HU [Bacillus thuringiensis serovar
thuringiensis str. T01001]
gi|228990624|ref|ZP_04150589.1| DNA-binding protein HU [Bacillus pseudomycoides DSM 12442]
gi|228996722|ref|ZP_04156359.1| DNA-binding protein HU [Bacillus mycoides Rock3-17]
gi|229004383|ref|ZP_04162146.1| DNA-binding protein HU [Bacillus mycoides Rock1-4]
gi|229010917|ref|ZP_04168113.1| DNA-binding protein HU [Bacillus mycoides DSM 2048]
gi|229016866|ref|ZP_04173794.1| DNA-binding protein HU [Bacillus cereus AH1273]
gi|229023072|ref|ZP_04179586.1| DNA-binding protein HU [Bacillus cereus AH1272]
gi|229058245|ref|ZP_04196633.1| DNA-binding protein HU [Bacillus cereus AH603]
gi|229069162|ref|ZP_04202453.1| DNA-binding protein HU [Bacillus cereus F65185]
gi|229084613|ref|ZP_04216882.1| DNA-binding protein HU [Bacillus cereus Rock3-44]
gi|229090571|ref|ZP_04221806.1| DNA-binding protein HU [Bacillus cereus Rock3-42]
gi|229121152|ref|ZP_04250389.1| DNA-binding protein HU [Bacillus cereus 95/8201]
gi|229126923|ref|ZP_04255934.1| DNA-binding protein HU [Bacillus cereus BDRD-Cer4]
gi|229132417|ref|ZP_04261271.1| DNA-binding protein HU [Bacillus cereus BDRD-ST196]
gi|229138303|ref|ZP_04266898.1| DNA-binding protein HU [Bacillus cereus BDRD-ST26]
gi|229155175|ref|ZP_04283287.1| DNA-binding protein HU [Bacillus cereus ATCC 4342]
gi|229160560|ref|ZP_04288555.1| DNA-binding protein HU [Bacillus cereus R309803]
gi|229172247|ref|ZP_04299811.1| DNA-binding protein HU [Bacillus cereus MM3]
gi|229189691|ref|ZP_04316705.1| DNA-binding protein HU [Bacillus cereus ATCC 10876]
gi|229195810|ref|ZP_04322570.1| DNA-binding protein HU [Bacillus cereus m1293]
gi|228587707|gb|EEK45765.1| DNA-binding protein HU [Bacillus cereus m1293]
gi|228593740|gb|EEK51545.1| DNA-binding protein HU [Bacillus cereus ATCC 10876]
gi|228611235|gb|EEK68493.1| DNA-binding protein HU [Bacillus cereus MM3]
gi|228622970|gb|EEK79801.1| DNA-binding protein HU [Bacillus cereus R309803]
gi|228628302|gb|EEK85017.1| DNA-binding protein HU [Bacillus cereus ATCC 4342]
gi|228645195|gb|EEL01432.1| DNA-binding protein HU [Bacillus cereus BDRD-ST26]
gi|228651123|gb|EEL07104.1| DNA-binding protein HU [Bacillus cereus BDRD-ST196]
gi|228656523|gb|EEL12350.1| DNA-binding protein HU [Bacillus cereus BDRD-Cer4]
gi|228662271|gb|EEL17874.1| DNA-binding protein HU [Bacillus cereus 95/8201]
gi|228692774|gb|EEL46498.1| DNA-binding protein HU [Bacillus cereus Rock3-42]
gi|228698689|gb|EEL51405.1| DNA-binding protein HU [Bacillus cereus Rock3-44]
gi|228713914|gb|EEL65798.1| DNA-binding protein HU [Bacillus cereus F65185]
gi|228720109|gb|EEL71693.1| DNA-binding protein HU [Bacillus cereus AH603]
gi|228738218|gb|EEL88700.1| DNA-binding protein HU [Bacillus cereus AH1272]
gi|228744427|gb|EEL94501.1| DNA-binding protein HU [Bacillus cereus AH1273]
gi|228750317|gb|EEM00147.1| DNA-binding protein HU [Bacillus mycoides DSM 2048]
gi|228756868|gb|EEM06150.1| DNA-binding protein HU [Bacillus mycoides Rock1-4]
gi|228763041|gb|EEM11951.1| DNA-binding protein HU [Bacillus mycoides Rock3-17]
gi|228769150|gb|EEM17748.1| DNA-binding protein HU [Bacillus pseudomycoides DSM 12442]
gi|228788126|gb|EEM36082.1| DNA-binding protein HU [Bacillus thuringiensis serovar
thuringiensis str. T01001]
gi|228795118|gb|EEM42615.1| DNA-binding protein HU [Bacillus thuringiensis serovar sotto str.
T04001]
gi|228814444|gb|EEM60709.1| DNA-binding protein HU [Bacillus thuringiensis serovar monterrey
BGSC 4AJ1]
gi|228833016|gb|EEM78584.1| DNA-binding protein HU [Bacillus thuringiensis serovar
pondicheriensis BGSC 4BA1]
gi|228845389|gb|EEM90424.1| DNA-binding protein HU [Bacillus thuringiensis serovar pulsiensis
BGSC 4CC1]
gi|228852382|gb|EEM97176.1| DNA-binding protein HU [Bacillus thuringiensis IBL 200]
gi|228859460|gb|EEN03888.1| DNA-binding protein HU [Bacillus thuringiensis IBL 4222]
Length = 93
Score = 102 bits (256), Expect = 1e-20, Method: Composition-based stats.
Identities = 33/91 (36%), Positives = 54/91 (59%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI +A+ + L+ +D K V+ + + + +AL G +V++ GFG+F VR+RAAR
Sbjct: 4 MNKTDLINAVAEASS-LSKKDATKAVDAVFDSILEALKQGDKVQLIGFGNFEVRERAARK 62
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + I + VP F+ GK LK+ +
Sbjct: 63 GRNPQTGEEIEIAASKVPAFKPGKALKDAVK 93
>gi|227820609|ref|YP_002824579.1| integration host factor subunit beta [Sinorhizobium fredii NGR234]
gi|227339608|gb|ACP23826.1| integration host factor, beta subunit [Sinorhizobium fredii NGR234]
Length = 125
Score = 102 bits (256), Expect = 1e-20, Method: Composition-based stats.
Identities = 49/89 (55%), Positives = 64/89 (71%)
Query: 3 KSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLAR 62
KS L+ +A +NP L ++DVE IVN +L+E+T ALA G RVE+RGFG+FSV+ R +R R
Sbjct: 28 KSELVQIVAARNPHLYHRDVENIVNAVLDEITDALAAGNRVELRGFGAFSVKNRPSRSGR 87
Query: 63 APLAQKVISVEEKMVPFFRAGKNLKERLN 91
P + VEEK VPFF+ GK L+ERLN
Sbjct: 88 NPRTGDSVFVEEKWVPFFKTGKELRERLN 116
>gi|307611843|emb|CBX01556.1| hypothetical protein LPW_32431 [Legionella pneumophila 130b]
Length = 103
Score = 102 bits (256), Expect = 1e-20, Method: Composition-based stats.
Identities = 42/96 (43%), Positives = 57/96 (59%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
MIKS LI IA + L + V +N +LE M++AL +G R+EIRGFGSFS+ R R
Sbjct: 1 MIKSELIEHIAARMTHLTEKQVADGINRILELMSEALIHGQRIEIRGFGSFSLHYRPPRN 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDST 96
A P + + E K P F+ GK L+ER+NS +
Sbjct: 61 AHNPKTGEKVVTEAKYSPHFKPGKELRERVNSSRAK 96
>gi|167032913|ref|YP_001668144.1| histone family protein DNA-binding protein [Pseudomonas putida
GB-1]
gi|166859401|gb|ABY97808.1| histone family protein DNA-binding protein [Pseudomonas putida
GB-1]
Length = 90
Score = 102 bits (256), Expect = 1e-20, Method: Composition-based stats.
Identities = 36/91 (39%), Positives = 51/91 (56%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI IA + + + ++ ++E +T AL G V + GFG+FSV+ RA R
Sbjct: 1 MNKSELIDAIAA-SADIPKAVAGRALDAVIESVTGALKQGDDVVLVGFGTFSVKDRAERT 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P K I +E VP F+AGK LK+ +N
Sbjct: 60 GRNPQTGKAIKIEAAKVPGFKAGKGLKDAVN 90
>gi|294083695|ref|YP_003550452.1| histone family protein DNA-binding protein [Candidatus
Puniceispirillum marinum IMCC1322]
gi|292663267|gb|ADE38368.1| histone family protein DNA-binding protein [Candidatus
Puniceispirillum marinum IMCC1322]
Length = 91
Score = 102 bits (256), Expect = 1e-20, Method: Composition-based stats.
Identities = 35/92 (38%), Positives = 51/92 (55%), Gaps = 1/92 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ L+ +A+ + L D + V+ + E + AL +GG V I GFG+FSV RAA
Sbjct: 1 MNKNDLVSEVAE-SSGLTKADAGRAVDAVFESIQGALKSGGDVRIVGFGTFSVAHRAATT 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P + I ++ P F+AG LKE +NS
Sbjct: 60 GRNPRTGETIQIKASKQPKFKAGAPLKEAVNS 91
>gi|116623390|ref|YP_825546.1| histone family protein DNA-binding protein [Candidatus Solibacter
usitatus Ellin6076]
gi|116226552|gb|ABJ85261.1| histone family protein DNA-binding protein [Candidatus Solibacter
usitatus Ellin6076]
Length = 112
Score = 102 bits (256), Expect = 1e-20, Method: Composition-based stats.
Identities = 30/92 (32%), Positives = 54/92 (58%), Gaps = 1/92 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI ++ + ++ ++ E IV + + + ++L G ++EIRGFGSF R+R R+
Sbjct: 1 MTKADLIEEVS-RVVEMTRKESEVIVEAIFDSIVRSLRTGDKIEIRGFGSFRTRQRQPRI 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P + V K +P+F+ K LK+ +N+
Sbjct: 60 GRNPKTGARVEVPAKKIPYFKPSKELKDVVNN 91
>gi|119945204|ref|YP_942884.1| DNA-binding protein HU beta subunit [Psychromonas ingrahamii 37]
gi|119863808|gb|ABM03285.1| DNA-binding protein HU beta subunit [Psychromonas ingrahamii 37]
Length = 91
Score = 102 bits (256), Expect = 1e-20, Method: Composition-based stats.
Identities = 34/92 (36%), Positives = 54/92 (58%), Gaps = 1/92 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K LI IA+ + ++ + ++ +E +T AL G V + GFG+FSV++RAAR
Sbjct: 1 MNKGQLIDNIAE-SADISKAAAGRALDAFIESVTGALVEGDNVSLIGFGAFSVKERAART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P + I + VP F+AGK+LK+ +N+
Sbjct: 60 GRNPQTNEPIQIAAAKVPAFKAGKSLKDAINA 91
>gi|313894803|ref|ZP_07828363.1| DNA-binding protein HU-beta [Selenomonas sp. oral taxon 137 str.
F0430]
gi|320530142|ref|ZP_08031212.1| putative integration host factor, beta subunit [Selenomonas
artemidis F0399]
gi|312976484|gb|EFR41939.1| DNA-binding protein HU-beta [Selenomonas sp. oral taxon 137 str.
F0430]
gi|320137575|gb|EFW29487.1| putative integration host factor, beta subunit [Selenomonas
artemidis F0399]
Length = 90
Score = 102 bits (256), Expect = 1e-20, Method: Composition-based stats.
Identities = 36/91 (39%), Positives = 53/91 (58%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K L+ +A++ L +D EK VN + E + AL+ G RV++ GFG+F V+ R AR
Sbjct: 1 MNKQELVANVAEQ-ANLTKKDAEKAVNAIFETIKGALSEGDRVQLIGFGTFEVKARQARK 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P K I++ P F+AGK LK+ +N
Sbjct: 60 GRNPRTGKEINIPASKTPVFKAGKALKDSVN 90
>gi|225025737|ref|ZP_03714929.1| hypothetical protein EIKCOROL_02641 [Eikenella corrodens ATCC
23834]
gi|224941518|gb|EEG22727.1| hypothetical protein EIKCOROL_02641 [Eikenella corrodens ATCC
23834]
Length = 100
Score = 102 bits (256), Expect = 1e-20, Method: Composition-based stats.
Identities = 44/97 (45%), Positives = 65/97 (67%), Gaps = 5/97 (5%)
Query: 1 MIKSSLIGTIAKK-----NPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRK 55
M KS L+ +A+K + +L +DVE+ V +L++ MT+ALA G R+EIRGFGSF +
Sbjct: 1 MTKSELMAHLAEKYLAQGHSRLAVKDVEQSVKVLVDAMTRALARGQRIEIRGFGSFDLNH 60
Query: 56 RAARLARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R AR+ R P + ++V EK VP F+AGK L+ER++
Sbjct: 61 RPARIGRNPKTGEKVNVPEKYVPHFKAGKELRERVDQ 97
>gi|292490562|ref|YP_003526001.1| histone family protein DNA-binding protein [Nitrosococcus
halophilus Nc4]
gi|291579157|gb|ADE13614.1| histone family protein DNA-binding protein [Nitrosococcus
halophilus Nc4]
Length = 94
Score = 102 bits (255), Expect = 1e-20, Method: Composition-based stats.
Identities = 36/90 (40%), Positives = 53/90 (58%), Gaps = 1/90 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ L+ +A + L+ D ++ VN LL+ + Q L G V + GFGSFSV+KR+AR
Sbjct: 1 MNKTELVNFVASE-ANLSQADAQRAVNALLQTIEQTLGEKGMVSLVGFGSFSVQKRSARS 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P + I++ VP F+ GK LKE +
Sbjct: 60 GRHPQTGETITIPATNVPVFKPGKALKEAV 89
>gi|152995752|ref|YP_001340587.1| histone family protein DNA-binding protein [Marinomonas sp.
MWYL1]
gi|150836676|gb|ABR70652.1| histone family protein DNA-binding protein [Marinomonas sp.
MWYL1]
Length = 90
Score = 102 bits (255), Expect = 1e-20, Method: Composition-based stats.
Identities = 35/91 (38%), Positives = 53/91 (58%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI IA + L+ ++ L+ + ALA G +V + GFG+F+V++RAAR
Sbjct: 1 MNKSELIDAIAA-SADLSKASASNALDATLKAIEAALAKGDQVTLVGFGTFAVKERAART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + I ++ VP F+AGK LK+ +N
Sbjct: 60 GRNPQTGEEIQIKAAKVPGFKAGKGLKDAVN 90
>gi|221135421|ref|ZP_03561724.1| integration host factor, beta subunit [Glaciecola sp. HTCC2999]
Length = 93
Score = 102 bits (255), Expect = 1e-20, Method: Composition-based stats.
Identities = 37/91 (40%), Positives = 54/91 (59%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI + ++ +++E V LLE M Q L G R+EIRGFGSFS+ RA R
Sbjct: 1 MTKSELIEKLMTSYDEVQTREIEVAVKELLEYMAQTLQRGERIEIRGFGSFSLHYRAPRT 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P +++ + K VP F+ GK L++R++
Sbjct: 61 GRNPKTGELVELSGKYVPHFKPGKELRDRVD 91
>gi|302877955|ref|YP_003846519.1| integration host factor, beta subunit [Gallionella
capsiferriformans ES-2]
gi|302580744|gb|ADL54755.1| integration host factor, beta subunit [Gallionella
capsiferriformans ES-2]
Length = 97
Score = 102 bits (255), Expect = 1e-20, Method: Composition-based stats.
Identities = 39/97 (40%), Positives = 59/97 (60%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M +S LI +A K P+L D++ V +L+EM++ LA G R+EIRGFGSF + R R
Sbjct: 1 MTRSELIVQLAAKFPQLTNSDIDMAVRTILDEMSRTLARGNRIEIRGFGSFGLNHRPPRK 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDSTL 97
R P + + V K VP F+ GK L+ER+++ ++
Sbjct: 61 GRNPKSGVNVMVPAKYVPHFKTGKELRERVDATAGSV 97
>gi|147676456|ref|YP_001210671.1| nucleoid DNA-binding protein [Pelotomaculum thermopropionicum SI]
gi|146272553|dbj|BAF58302.1| bacterial nucleoid DNA-binding protein [Pelotomaculum
thermopropionicum SI]
Length = 91
Score = 102 bits (255), Expect = 1e-20, Method: Composition-based stats.
Identities = 35/90 (38%), Positives = 58/90 (64%), Gaps = 1/90 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI +A+K +L +D EK ++ L+ + +ALA G +V++ GFG+F +R+RAAR
Sbjct: 1 MNKAELISNVAEKT-ELTKKDAEKAISAFLDTVGEALARGDKVQLVGFGTFEIRERAARK 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P + I++ VP F+AGK L++ +
Sbjct: 60 GRNPQTGEEINIAAARVPVFKAGKALRDAV 89
>gi|255659240|ref|ZP_05404649.1| DNA-binding protein HU [Mitsuokella multacida DSM 20544]
gi|260848694|gb|EEX68701.1| DNA-binding protein HU [Mitsuokella multacida DSM 20544]
Length = 91
Score = 102 bits (255), Expect = 2e-20, Method: Composition-based stats.
Identities = 35/92 (38%), Positives = 56/92 (60%), Gaps = 1/92 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ L+ ++A+K L +D EK V + E + QAL G +V++ GFG+F V++R+AR
Sbjct: 1 MNKNELVASVAEK-AGLTKKDAEKAVGAIFESIQQALVEGDKVQVIGFGTFEVKERSARA 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P + I + P F+AGK LK+ +N+
Sbjct: 60 GRNPRTNETIQIPASKNPAFKAGKALKDAVNA 91
>gi|145220403|ref|YP_001131112.1| histone family protein DNA-binding protein [Prosthecochloris
vibrioformis DSM 265]
gi|145206567|gb|ABP37610.1| histone family protein DNA-binding protein [Chlorobium
phaeovibrioides DSM 265]
Length = 91
Score = 102 bits (255), Expect = 2e-20, Method: Composition-based stats.
Identities = 33/90 (36%), Positives = 47/90 (52%), Gaps = 1/90 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ L+ IA + L D EK VN + +T +L G V + GFG+F+ RA R
Sbjct: 1 MSKAELVEKIAAQ-ANLTKVDAEKSVNAFINVVTSSLKAGDDVTLVGFGTFTTGDRAERQ 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P K I++ K V F+ GK LK+ +
Sbjct: 60 GRNPQTGKTITIPAKTVVKFKPGKALKDEV 89
>gi|26989027|ref|NP_744452.1| histone family protein DNA-binding protein [Pseudomonas putida
KT2440]
gi|148548674|ref|YP_001268776.1| histone family protein DNA-binding protein [Pseudomonas putida
F1]
gi|14028717|gb|AAK52475.1|AF345628_1 histone-like protein HU form B [Pseudomonas putida]
gi|24983851|gb|AAN67916.1|AE016424_2 DNA-binding protein HU-beta [Pseudomonas putida KT2440]
gi|148512732|gb|ABQ79592.1| bacterial nucleoid protein HU beta subunit [Pseudomonas putida
F1]
gi|313499611|gb|ADR60977.1| HupB [Pseudomonas putida BIRD-1]
Length = 90
Score = 102 bits (255), Expect = 2e-20, Method: Composition-based stats.
Identities = 36/91 (39%), Positives = 52/91 (57%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI IA + + + ++ ++E +T AL G V + GFG+FSV++RA R
Sbjct: 1 MNKSELIDAIAA-SADIPKAVAGRALDAVIESVTGALKQGDDVVLVGFGTFSVKERAERT 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P K I +E VP F+AGK LK+ +N
Sbjct: 60 GRNPQTGKAIKIEAAKVPGFKAGKGLKDAVN 90
>gi|229096853|ref|ZP_04227822.1| DNA-binding protein HU 1 [Bacillus cereus Rock3-29]
gi|229102961|ref|ZP_04233650.1| DNA-binding protein HU 1 [Bacillus cereus Rock3-28]
gi|229115841|ref|ZP_04245239.1| DNA-binding protein HU 1 [Bacillus cereus Rock1-3]
gi|229161324|ref|ZP_04289309.1| DNA-binding protein HU 1 [Bacillus cereus R309803]
gi|228622138|gb|EEK78979.1| DNA-binding protein HU 1 [Bacillus cereus R309803]
gi|228667584|gb|EEL23028.1| DNA-binding protein HU 1 [Bacillus cereus Rock1-3]
gi|228680376|gb|EEL34564.1| DNA-binding protein HU 1 [Bacillus cereus Rock3-28]
gi|228686463|gb|EEL40372.1| DNA-binding protein HU 1 [Bacillus cereus Rock3-29]
Length = 90
Score = 102 bits (255), Expect = 2e-20, Method: Composition-based stats.
Identities = 32/91 (35%), Positives = 52/91 (57%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI +A + ++ +D V + + + AL +G +V++ GFG+F VR+R+AR
Sbjct: 1 MNKTELIKNVA-QTADISQKDASAAVQSVFDTIANALQSGDKVQLIGFGTFEVRERSART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + I + VP F+AGK LKE +
Sbjct: 60 GRNPQTGEEIQIAAGKVPAFKAGKELKEAVK 90
>gi|288958754|ref|YP_003449095.1| DNA-binding protein HU-beta [Azospirillum sp. B510]
gi|288911062|dbj|BAI72551.1| DNA-binding protein HU-beta [Azospirillum sp. B510]
Length = 90
Score = 102 bits (255), Expect = 2e-20, Method: Composition-based stats.
Identities = 31/91 (34%), Positives = 51/91 (56%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ L+ +A+ + L+ D K V+ + + + ++L NG V + GFG+F+V +R A
Sbjct: 1 MNKNDLVAHVAEAS-GLSKTDATKAVDAVFDSIAESLKNGDEVRLVGFGTFAVAERPATE 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + I + P F+AGK LK+ LN
Sbjct: 60 GRNPRTGEKIDIPASKQPKFKAGKTLKDALN 90
>gi|153871697|ref|ZP_02000804.1| DNA-binding protein HU [Beggiatoa sp. PS]
gi|152071839|gb|EDN69198.1| DNA-binding protein HU [Beggiatoa sp. PS]
Length = 90
Score = 102 bits (255), Expect = 2e-20, Method: Composition-based stats.
Identities = 33/91 (36%), Positives = 54/91 (59%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI +A+ + ++ K V+ ++E + ALA V + GFG+F+VR+RAAR+
Sbjct: 1 MNKSELIQAVAE-SAEITKGQAGKAVDAVIESIKDALAEADSVTLIGFGTFTVRERAARV 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + + ++ VP F+ GK LK+ +N
Sbjct: 60 GRNPRTGERLDIKAANVPVFKPGKALKDAVN 90
>gi|319938218|ref|ZP_08012616.1| histone family protein DNA-binding protein [Coprobacillus sp.
29_1]
gi|319806739|gb|EFW03388.1| histone family protein DNA-binding protein [Coprobacillus sp.
29_1]
Length = 92
Score = 102 bits (255), Expect = 2e-20, Method: Composition-based stats.
Identities = 30/93 (32%), Positives = 45/93 (48%), Gaps = 1/93 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ L+ IA L E VN + +T L +G ++ ++GFG+F VR R AR
Sbjct: 1 MNKTELVEKIAA-TAGLTKTQAEAAVNAFVATVTDGLKDGDKITLKGFGTFEVRAREART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSP 93
R P + + + VP F+A LK +N
Sbjct: 60 GRNPRTGETMEIAASKVPAFKASSALKNVVNEK 92
>gi|104781016|ref|YP_607514.1| DNA-binding protein HU-beta [Pseudomonas entomophila L48]
gi|95110003|emb|CAK14708.1| DNA-binding protein HU-beta [Pseudomonas entomophila L48]
Length = 90
Score = 102 bits (255), Expect = 2e-20, Method: Composition-based stats.
Identities = 35/91 (38%), Positives = 51/91 (56%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI IA + + + ++ ++E +T AL G V + GFG+FSV++RA R
Sbjct: 1 MNKSELIDAIAA-SADIPKAVAGRALDAVIESVTGALKQGDDVVLVGFGTFSVKERAERT 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P K I + VP F+AGK LK+ +N
Sbjct: 60 GRNPQTGKAIKIAAAKVPGFKAGKGLKDAVN 90
>gi|163748941|ref|ZP_02156192.1| integration host factor, beta subunit [Shewanella benthica KT99]
gi|161331317|gb|EDQ02205.1| integration host factor, beta subunit [Shewanella benthica KT99]
Length = 95
Score = 102 bits (255), Expect = 2e-20, Method: Composition-based stats.
Identities = 39/95 (41%), Positives = 60/95 (63%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI +A + +L+ ++VE + +LE+M Q L G R+EIRGFGSFS+ RA R
Sbjct: 1 MTKSELIEKLATRQSQLSAKEVESAIKEMLEQMAQTLEGGNRIEIRGFGSFSLHFRAPRT 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDS 95
R P + ++ K VP F+ GK L+ER+++ ++
Sbjct: 61 GRNPKTGTSVELDGKYVPHFKPGKELRERVDAINA 95
>gi|146296237|ref|YP_001180008.1| histone family protein DNA-binding protein [Caldicellulosiruptor
saccharolyticus DSM 8903]
gi|302871272|ref|YP_003839908.1| histone family protein DNA-binding protein [Caldicellulosiruptor
obsidiansis OB47]
gi|312128213|ref|YP_003993087.1| histone family protein DNA-binding protein [Caldicellulosiruptor
hydrothermalis 108]
gi|312134569|ref|YP_004001907.1| histone family protein DNA-binding protein [Caldicellulosiruptor
owensensis OL]
gi|312623028|ref|YP_004024641.1| histone family protein DNA-binding protein [Caldicellulosiruptor
kronotskyensis 2002]
gi|312792841|ref|YP_004025764.1| histone family protein DNA-binding protein [Caldicellulosiruptor
kristjanssonii 177R1B]
gi|312876107|ref|ZP_07736095.1| histone family protein DNA-binding protein [Caldicellulosiruptor
lactoaceticus 6A]
gi|145409813|gb|ABP66817.1| bacterial nucleoid protein Hbs [Caldicellulosiruptor
saccharolyticus DSM 8903]
gi|302574131|gb|ADL41922.1| histone family protein DNA-binding protein [Caldicellulosiruptor
obsidiansis OB47]
gi|311774620|gb|ADQ04107.1| histone family protein DNA-binding protein [Caldicellulosiruptor
owensensis OL]
gi|311778232|gb|ADQ07718.1| histone family protein DNA-binding protein [Caldicellulosiruptor
hydrothermalis 108]
gi|311797093|gb|EFR13434.1| histone family protein DNA-binding protein [Caldicellulosiruptor
lactoaceticus 6A]
gi|312179981|gb|ADQ40151.1| histone family protein DNA-binding protein [Caldicellulosiruptor
kristjanssonii 177R1B]
gi|312203495|gb|ADQ46822.1| histone family protein DNA-binding protein [Caldicellulosiruptor
kronotskyensis 2002]
Length = 91
Score = 102 bits (255), Expect = 2e-20, Method: Composition-based stats.
Identities = 38/90 (42%), Positives = 59/90 (65%), Gaps = 1/90 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI +A+K+ L +D EK +N ++ +T+AL+ G +V++ GFGSF VR+RA R+
Sbjct: 1 MNKTDLISAMAEKS-GLTKKDAEKALNAFVDAVTEALSKGEKVQLVGFGSFEVRERAERV 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P Q+ I + VP F+AGK LK+ +
Sbjct: 60 GRNPQTQEEIKIPATKVPVFKAGKMLKDAV 89
>gi|71281140|ref|YP_270448.1| HU family DNA-binding protein [Colwellia psychrerythraea 34H]
gi|71146880|gb|AAZ27353.1| DNA-binding protein, HU family [Colwellia psychrerythraea 34H]
Length = 90
Score = 102 bits (255), Expect = 2e-20, Method: Composition-based stats.
Identities = 33/91 (36%), Positives = 48/91 (52%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI IA ++ + ++ + +T L +G +V + GFG+FSVR RAAR
Sbjct: 1 MNKSQLIEKIAA-GADISKAAAGRALDSFIGAVTDELKDGEQVALVGFGTFSVRDRAART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P I + +P F+AGK LK+ N
Sbjct: 60 GRNPQTGATIQIAAAKIPSFKAGKALKDACN 90
>gi|50085437|ref|YP_046947.1| integration host factor (IHF),beta subunit, site specific
recombination [Acinetobacter sp. ADP1]
gi|49531413|emb|CAG69125.1| integration host factor (IHF),beta subunit, site specific
recombination [Acinetobacter sp. ADP1]
Length = 101
Score = 102 bits (255), Expect = 2e-20, Method: Composition-based stats.
Identities = 40/91 (43%), Positives = 56/91 (61%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
KS LI IA KNP L VE+ V +++++M AL+N R+EIRGFGSF++ R R+
Sbjct: 7 NKSDLIERIALKNPHLAEPLVEEAVKIMIDQMIDALSNDNRIEIRGFGSFALHHRDPRVG 66
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P K + V K VP F+ GK L++ +N
Sbjct: 67 RNPKTGKSVEVAAKAVPHFKPGKALRDAVNE 97
>gi|227551167|ref|ZP_03981216.1| DNA-binding protein II [Enterococcus faecium TX1330]
gi|257877996|ref|ZP_05657649.1| DNA binding protein HU [Enterococcus faecium 1,230,933]
gi|257881217|ref|ZP_05660870.1| DNA binding protein HU [Enterococcus faecium 1,231,502]
gi|257884881|ref|ZP_05664534.1| DNA binding protein HU [Enterococcus faecium 1,231,501]
gi|257887715|ref|ZP_05667368.1| DNA binding protein HU [Enterococcus faecium 1,141,733]
gi|257889805|ref|ZP_05669458.1| DNA binding protein HU [Enterococcus faecium 1,231,410]
gi|257892258|ref|ZP_05671911.1| DNA binding protein HU [Enterococcus faecium 1,231,408]
gi|257896209|ref|ZP_05675862.1| DNA binding protein HU [Enterococcus faecium Com12]
gi|257898847|ref|ZP_05678500.1| DNA binding protein HU [Enterococcus faecium Com15]
gi|258616517|ref|ZP_05714287.1| DNA-binding protein HU [Enterococcus faecium DO]
gi|260559047|ref|ZP_05831233.1| DNA binding protein HU [Enterococcus faecium C68]
gi|261207581|ref|ZP_05922266.1| DNA binding protein HU [Enterococcus faecium TC 6]
gi|289565093|ref|ZP_06445546.1| DNA-binding protein HU 1 [Enterococcus faecium D344SRF]
gi|293379549|ref|ZP_06625691.1| DNA-binding protein HU [Enterococcus faecium PC4.1]
gi|293556740|ref|ZP_06675303.1| DNA-binding protein HU [Enterococcus faecium E1039]
gi|293563398|ref|ZP_06677847.1| DNA-binding protein HU 1 [Enterococcus faecium E1162]
gi|293568056|ref|ZP_06679394.1| DNA-binding protein HU 1 (DNA-binding protein II) (HB)
[Enterococcus faecium E1071]
gi|293570250|ref|ZP_06681319.1| DNA-binding protein HU 1 [Enterococcus faecium E980]
gi|294614845|ref|ZP_06694740.1| DNA-binding protein HU 1 [Enterococcus faecium E1636]
gi|294618676|ref|ZP_06698210.1| DNA-binding protein HU 1 [Enterococcus faecium E1679]
gi|294621938|ref|ZP_06701086.1| DNA-binding protein HU 1 [Enterococcus faecium U0317]
gi|314938009|ref|ZP_07845319.1| DNA-binding protein HU [Enterococcus faecium TX0133a04]
gi|314942005|ref|ZP_07848866.1| DNA-binding protein HU [Enterococcus faecium TX0133C]
gi|314948742|ref|ZP_07852114.1| DNA-binding protein HU [Enterococcus faecium TX0082]
gi|314951760|ref|ZP_07854799.1| DNA-binding protein HU [Enterococcus faecium TX0133A]
gi|314991833|ref|ZP_07857291.1| DNA-binding protein HU [Enterococcus faecium TX0133B]
gi|314995874|ref|ZP_07860961.1| DNA-binding protein HU [Enterococcus faecium TX0133a01]
gi|227179729|gb|EEI60701.1| DNA-binding protein II [Enterococcus faecium TX1330]
gi|257812224|gb|EEV40982.1| DNA binding protein HU [Enterococcus faecium 1,230,933]
gi|257816875|gb|EEV44203.1| DNA binding protein HU [Enterococcus faecium 1,231,502]
gi|257820719|gb|EEV47867.1| DNA binding protein HU [Enterococcus faecium 1,231,501]
gi|257823769|gb|EEV50701.1| DNA binding protein HU [Enterococcus faecium 1,141,733]
gi|257826165|gb|EEV52791.1| DNA binding protein HU [Enterococcus faecium 1,231,410]
gi|257828637|gb|EEV55244.1| DNA binding protein HU [Enterococcus faecium 1,231,408]
gi|257832774|gb|EEV59195.1| DNA binding protein HU [Enterococcus faecium Com12]
gi|257836759|gb|EEV61833.1| DNA binding protein HU [Enterococcus faecium Com15]
gi|260074804|gb|EEW63120.1| DNA binding protein HU [Enterococcus faecium C68]
gi|260077964|gb|EEW65670.1| DNA binding protein HU [Enterococcus faecium TC 6]
gi|289163100|gb|EFD10947.1| DNA-binding protein HU 1 [Enterococcus faecium D344SRF]
gi|291589277|gb|EFF21087.1| DNA-binding protein HU 1 (DNA-binding protein II) (HB)
[Enterococcus faecium E1071]
gi|291592307|gb|EFF23921.1| DNA-binding protein HU 1 [Enterococcus faecium E1636]
gi|291595059|gb|EFF26402.1| DNA-binding protein HU 1 [Enterococcus faecium E1679]
gi|291598487|gb|EFF29556.1| DNA-binding protein HU 1 [Enterococcus faecium U0317]
gi|291601072|gb|EFF31361.1| DNA-binding protein HU [Enterococcus faecium E1039]
gi|291604659|gb|EFF34144.1| DNA-binding protein HU 1 [Enterococcus faecium E1162]
gi|291609657|gb|EFF38918.1| DNA-binding protein HU 1 [Enterococcus faecium E980]
gi|292641858|gb|EFF60026.1| DNA-binding protein HU [Enterococcus faecium PC4.1]
gi|313589978|gb|EFR68823.1| DNA-binding protein HU [Enterococcus faecium TX0133a01]
gi|313593644|gb|EFR72489.1| DNA-binding protein HU [Enterococcus faecium TX0133B]
gi|313596039|gb|EFR74884.1| DNA-binding protein HU [Enterococcus faecium TX0133A]
gi|313599257|gb|EFR78102.1| DNA-binding protein HU [Enterococcus faecium TX0133C]
gi|313642584|gb|EFS07164.1| DNA-binding protein HU [Enterococcus faecium TX0133a04]
gi|313644808|gb|EFS09388.1| DNA-binding protein HU [Enterococcus faecium TX0082]
Length = 91
Score = 102 bits (255), Expect = 2e-20, Method: Composition-based stats.
Identities = 33/90 (36%), Positives = 49/90 (54%), Gaps = 1/90 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ LI +A L +D V+ + + ALANG +V++ GFG+F VR+RAAR
Sbjct: 3 NKAELIEKVASAT-DLTKKDATAAVDAVFSTIQDALANGEKVQLIGFGNFEVRERAARKG 61
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + I + VP F+ GK LK+ +
Sbjct: 62 RNPQTGEEIEIPASKVPAFKPGKALKDAVK 91
>gi|152975541|ref|YP_001375058.1| histone family protein DNA-binding protein [Bacillus cereus
subsp. cytotoxis NVH 391-98]
gi|152024293|gb|ABS22063.1| histone family protein DNA-binding protein [Bacillus cytotoxicus
NVH 391-98]
Length = 90
Score = 102 bits (255), Expect = 2e-20, Method: Composition-based stats.
Identities = 35/91 (38%), Positives = 54/91 (59%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI +A ++ ++ +D V + + +T AL NG +V++ GFG+F VR+RAAR
Sbjct: 1 MNKTELIKNVA-QSADISQKDASVAVQSVFDTITNALQNGDKVQLIGFGTFEVRERAART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + I + VP F+AGK LKE +
Sbjct: 60 GRNPQTGEEIQIAAGKVPAFKAGKELKEAVK 90
>gi|145301241|ref|YP_001144081.1| DNA-binding protein HU-beta [Aeromonas salmonicida subsp.
salmonicida A449]
gi|142856018|gb|ABO92333.1| DNA-binding protein HU-beta [Aeromonas salmonicida subsp.
salmonicida A449]
Length = 90
Score = 102 bits (255), Expect = 2e-20, Method: Composition-based stats.
Identities = 38/91 (41%), Positives = 51/91 (56%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI IA+ + + E VN L+ +T L GG V + GFG+F VR RAAR
Sbjct: 1 MNKSDLIMAIAE-SADITKAKAEAAVNALMATITTELKEGGSVALTGFGTFQVRARAART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + I V +P F+AGK+LK+ +N
Sbjct: 60 GRNPQTGEAIEVAAANIPSFKAGKSLKDAVN 90
>gi|30261605|ref|NP_843982.1| DNA-binding protein HU [Bacillus anthracis str. Ames]
gi|42780711|ref|NP_977958.1| DNA-binding protein HU [Bacillus cereus ATCC 10987]
gi|47526805|ref|YP_018154.1| DNA-binding protein HU [Bacillus anthracis str. 'Ames Ancestor']
gi|49184437|ref|YP_027689.1| DNA-binding protein HU [Bacillus anthracis str. Sterne]
gi|49481024|ref|YP_035726.1| DNA-binding protein HU [Bacillus thuringiensis serovar konkukian
str. 97-27]
gi|52143837|ref|YP_082990.1| DNA-binding protein HU [Bacillus cereus E33L]
gi|152975033|ref|YP_001374550.1| histone family protein DNA-binding protein [Bacillus cereus
subsp. cytotoxis NVH 391-98]
gi|163939425|ref|YP_001644309.1| histone family protein DNA-binding protein [Bacillus
weihenstephanensis KBAB4]
gi|165869502|ref|ZP_02214161.1| DNA-binding protein HU [Bacillus anthracis str. A0488]
gi|167633255|ref|ZP_02391580.1| DNA-binding protein HU [Bacillus anthracis str. A0442]
gi|167639174|ref|ZP_02397447.1| DNA-binding protein HU [Bacillus anthracis str. A0193]
gi|170686317|ref|ZP_02877539.1| DNA-binding protein HU [Bacillus anthracis str. A0465]
gi|170706435|ref|ZP_02896895.1| DNA-binding protein HU [Bacillus anthracis str. A0389]
gi|177650638|ref|ZP_02933605.1| DNA-binding protein HU [Bacillus anthracis str. A0174]
gi|190568652|ref|ZP_03021557.1| DNA-binding protein HU [Bacillus anthracis Tsiankovskii-I]
gi|196033321|ref|ZP_03100733.1| DNA-binding protein HU [Bacillus cereus W]
gi|196039102|ref|ZP_03106409.1| DNA-binding protein HU [Bacillus cereus NVH0597-99]
gi|196046571|ref|ZP_03113795.1| DNA-binding protein HU [Bacillus cereus 03BB108]
gi|206970635|ref|ZP_03231587.1| DNA-binding protein HU [Bacillus cereus AH1134]
gi|206975002|ref|ZP_03235917.1| DNA-binding protein HU [Bacillus cereus H3081.97]
gi|217959087|ref|YP_002337635.1| DNA-binding protein HU [Bacillus cereus AH187]
gi|218233805|ref|YP_002366291.1| DNA-binding protein HU [Bacillus cereus B4264]
gi|218896539|ref|YP_002444950.1| DNA-binding protein HU [Bacillus cereus G9842]
gi|218902721|ref|YP_002450555.1| DNA-binding protein HU [Bacillus cereus AH820]
gi|222095239|ref|YP_002529299.1| DNA-binding protein hu [Bacillus cereus Q1]
gi|225863473|ref|YP_002748851.1| DNA-binding protein HU [Bacillus cereus 03BB102]
gi|227815643|ref|YP_002815652.1| DNA-binding protein HU [Bacillus anthracis str. CDC 684]
gi|228920320|ref|ZP_04083667.1| DNA-binding protein HU [Bacillus thuringiensis serovar
huazhongensis BGSC 4BD1]
gi|228932897|ref|ZP_04095763.1| DNA-binding protein HU [Bacillus thuringiensis serovar
andalousiensis BGSC 4AW1]
gi|229029289|ref|ZP_04185379.1| DNA-binding protein HU [Bacillus cereus AH1271]
gi|229166456|ref|ZP_04294212.1| DNA-binding protein HU [Bacillus cereus AH621]
gi|229601774|ref|YP_002866013.1| DNA-binding protein HU [Bacillus anthracis str. A0248]
gi|254683097|ref|ZP_05146958.1| DNA-binding protein HU [Bacillus anthracis str. CNEVA-9066]
gi|254723685|ref|ZP_05185471.1| DNA-binding protein HU [Bacillus anthracis str. A1055]
gi|254734446|ref|ZP_05192158.1| DNA-binding protein HU [Bacillus anthracis str. Western North
America USA6153]
gi|254740857|ref|ZP_05198545.1| DNA-binding protein HU [Bacillus anthracis str. Kruger B]
gi|254755095|ref|ZP_05207129.1| DNA-binding protein HU [Bacillus anthracis str. Vollum]
gi|254759632|ref|ZP_05211656.1| DNA-binding protein HU [Bacillus anthracis str. Australia 94]
gi|296502179|ref|YP_003663879.1| DNA-binding protein HU [Bacillus thuringiensis BMB171]
gi|300117462|ref|ZP_07055252.1| DNA-binding protein HU [Bacillus cereus SJ1]
gi|301053147|ref|YP_003791358.1| DNA-binding protein HU [Bacillus anthracis CI]
gi|30255459|gb|AAP25468.1| DNA-binding protein HU [Bacillus anthracis str. Ames]
gi|42736631|gb|AAS40566.1| DNA-binding protein HU [Bacillus cereus ATCC 10987]
gi|47501953|gb|AAT30629.1| DNA-binding protein HU [Bacillus anthracis str. 'Ames Ancestor']
gi|49178364|gb|AAT53740.1| DNA-binding protein HU [Bacillus anthracis str. Sterne]
gi|49332580|gb|AAT63226.1| DNA-binding protein HU [Bacillus thuringiensis serovar konkukian
str. 97-27]
gi|51977306|gb|AAU18856.1| DNA-binding protein HU [Bacillus cereus E33L]
gi|152023785|gb|ABS21555.1| histone family protein DNA-binding protein [Bacillus cytotoxicus
NVH 391-98]
gi|163861622|gb|ABY42681.1| histone family protein DNA-binding protein [Bacillus
weihenstephanensis KBAB4]
gi|164714942|gb|EDR20460.1| DNA-binding protein HU [Bacillus anthracis str. A0488]
gi|167512964|gb|EDR88337.1| DNA-binding protein HU [Bacillus anthracis str. A0193]
gi|167531293|gb|EDR93971.1| DNA-binding protein HU [Bacillus anthracis str. A0442]
gi|170128533|gb|EDS97400.1| DNA-binding protein HU [Bacillus anthracis str. A0389]
gi|170670014|gb|EDT20755.1| DNA-binding protein HU [Bacillus anthracis str. A0465]
gi|172083782|gb|EDT68842.1| DNA-binding protein HU [Bacillus anthracis str. A0174]
gi|190560252|gb|EDV14232.1| DNA-binding protein HU [Bacillus anthracis Tsiankovskii-I]
gi|195993755|gb|EDX57711.1| DNA-binding protein HU [Bacillus cereus W]
gi|196022504|gb|EDX61187.1| DNA-binding protein HU [Bacillus cereus 03BB108]
gi|196030247|gb|EDX68847.1| DNA-binding protein HU [Bacillus cereus NVH0597-99]
gi|206734271|gb|EDZ51441.1| DNA-binding protein HU [Bacillus cereus AH1134]
gi|206747021|gb|EDZ58413.1| DNA-binding protein HU [Bacillus cereus H3081.97]
gi|217064829|gb|ACJ79079.1| DNA-binding protein HU [Bacillus cereus AH187]
gi|218161762|gb|ACK61754.1| DNA-binding protein HU [Bacillus cereus B4264]
gi|218539449|gb|ACK91847.1| DNA-binding protein HU [Bacillus cereus AH820]
gi|218542908|gb|ACK95302.1| DNA-binding protein HU [Bacillus cereus G9842]
gi|221239297|gb|ACM12007.1| DNA-binding protein HU [Bacillus cereus Q1]
gi|225788998|gb|ACO29215.1| DNA-binding protein HU [Bacillus cereus 03BB102]
gi|227005725|gb|ACP15468.1| DNA-binding protein HU [Bacillus anthracis str. CDC 684]
gi|228617030|gb|EEK74099.1| DNA-binding protein HU [Bacillus cereus AH621]
gi|228732037|gb|EEL82929.1| DNA-binding protein HU [Bacillus cereus AH1271]
gi|228826763|gb|EEM72531.1| DNA-binding protein HU [Bacillus thuringiensis serovar
andalousiensis BGSC 4AW1]
gi|228839343|gb|EEM84637.1| DNA-binding protein HU [Bacillus thuringiensis serovar
huazhongensis BGSC 4BD1]
gi|229266182|gb|ACQ47819.1| DNA-binding protein HU [Bacillus anthracis str. A0248]
gi|296323231|gb|ADH06159.1| DNA-binding protein HU [Bacillus thuringiensis BMB171]
gi|298725297|gb|EFI65949.1| DNA-binding protein HU [Bacillus cereus SJ1]
gi|300375316|gb|ADK04220.1| DNA-binding protein HU [Bacillus cereus biovar anthracis str. CI]
gi|324325626|gb|ADY20886.1| DNA-binding protein HU [Bacillus thuringiensis serovar finitimus
YBT-020]
gi|326939227|gb|AEA15123.1| DNA-binding protein HU [Bacillus thuringiensis serovar chinensis
CT-43]
Length = 90
Score = 102 bits (255), Expect = 2e-20, Method: Composition-based stats.
Identities = 33/91 (36%), Positives = 54/91 (59%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI +A+ + L+ +D K V+ + + + +AL G +V++ GFG+F VR+RAAR
Sbjct: 1 MNKTDLINAVAEASS-LSKKDATKAVDAVFDSILEALKQGDKVQLIGFGNFEVRERAARK 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + I + VP F+ GK LK+ +
Sbjct: 60 GRNPQTGEEIEIAASKVPAFKPGKALKDAVK 90
>gi|157375434|ref|YP_001474034.1| integration host factor, beta subunit [Shewanella sediminis
HAW-EB3]
gi|189045046|sp|A8FVN3|IHFB_SHESH RecName: Full=Integration host factor subunit beta;
Short=IHF-beta
gi|157317808|gb|ABV36906.1| integration host factor, beta subunit [Shewanella sediminis
HAW-EB3]
Length = 95
Score = 102 bits (255), Expect = 2e-20, Method: Composition-based stats.
Identities = 38/95 (40%), Positives = 60/95 (63%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI +A + +++ ++VE + +LE+M Q L G R+EIRGFGSFS+ RA R
Sbjct: 1 MTKSELIEKLATRQSQMSAKEVESAIKEMLEQMAQTLEGGDRIEIRGFGSFSLHFRAPRT 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDS 95
R P + ++ K VP F+ GK L+ER+++ ++
Sbjct: 61 GRNPKTGTSVDLDGKYVPHFKPGKELRERVDAINA 95
>gi|157146943|ref|YP_001454262.1| transcriptional regulator HU subunit beta [Citrobacter koseri
ATCC BAA-895]
gi|237730417|ref|ZP_04560898.1| transcriptional regulator HU subunit beta [Citrobacter sp. 30_2]
gi|283834241|ref|ZP_06353982.1| DNA-binding protein HU-beta [Citrobacter youngae ATCC 29220]
gi|157084148|gb|ABV13826.1| hypothetical protein CKO_02720 [Citrobacter koseri ATCC BAA-895]
gi|226905956|gb|EEH91874.1| transcriptional regulator HU subunit beta [Citrobacter sp. 30_2]
gi|291069760|gb|EFE07869.1| DNA-binding protein HU-beta [Citrobacter youngae ATCC 29220]
Length = 90
Score = 102 bits (255), Expect = 2e-20, Method: Composition-based stats.
Identities = 34/91 (37%), Positives = 53/91 (58%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI IA ++ + ++ ++ +T++L G V + GFG+F+V++RAAR
Sbjct: 1 MNKSQLIDKIAA-GADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P K I++ VP FRAGK LK+ +N
Sbjct: 60 GRNPQTGKEITIAAAKVPGFRAGKALKDAVN 90
>gi|332977211|gb|EGK14007.1| DNA-binding protein HU [Desmospora sp. 8437]
Length = 94
Score = 102 bits (255), Expect = 2e-20, Method: Composition-based stats.
Identities = 35/90 (38%), Positives = 55/90 (61%), Gaps = 1/90 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ LI +A+K + +D + V+ +L+ +T+AL G +V++ GFG+F VR+RAAR
Sbjct: 5 NKTELISQVAEKT-NMTKKDATQAVDAVLDTITEALKAGEKVQLIGFGNFEVRERAARKG 63
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P K I + VP F+ GK LK+ +N
Sbjct: 64 RNPQTGKEIDIPASKVPAFKPGKALKDDVN 93
>gi|15800170|ref|NP_286182.1| transcriptional regulator HU subunit beta [Escherichia coli
O157:H7 EDL933]
gi|15829748|ref|NP_308521.1| transcriptional regulator HU subunit beta [Escherichia coli
O157:H7 str. Sakai]
gi|16128425|ref|NP_414974.1| HU, DNA-binding transcriptional regulator, beta subunit
[Escherichia coli str. K-12 substr. MG1655]
gi|24111824|ref|NP_706334.1| transcriptional regulator HU subunit beta [Shigella flexneri 2a
str. 301]
gi|26246451|ref|NP_752490.1| transcriptional regulator HU subunit beta [Escherichia coli
CFT073]
gi|30061942|ref|NP_836113.1| transcriptional regulator HU subunit beta [Shigella flexneri 2a
str. 2457T]
gi|74311015|ref|YP_309434.1| transcriptional regulator HU subunit beta [Shigella sonnei Ss046]
gi|82542928|ref|YP_406875.1| transcriptional regulator HU subunit beta [Shigella boydii Sb227]
gi|82775653|ref|YP_402000.1| transcriptional regulator HU subunit beta [Shigella dysenteriae
Sd197]
gi|89107310|ref|AP_001090.1| HU, DNA-binding transcriptional regulator, beta subunit
[Escherichia coli str. K-12 substr. W3110]
gi|91209514|ref|YP_539500.1| transcriptional regulator HU subunit beta [Escherichia coli
UTI89]
gi|110640701|ref|YP_668429.1| transcriptional regulator HU subunit beta [Escherichia coli 536]
gi|110804468|ref|YP_687988.1| transcriptional regulator HU subunit beta [Shigella flexneri 5
str. 8401]
gi|117622700|ref|YP_851613.1| transcriptional regulator HU subunit beta [Escherichia coli APEC
O1]
gi|157158595|ref|YP_001461627.1| transcriptional regulator HU subunit beta [Escherichia coli
E24377A]
gi|157159967|ref|YP_001457285.1| transcriptional regulator HU subunit beta [Escherichia coli HS]
gi|168747884|ref|ZP_02772906.1| DNA-binding protein HU-beta [Escherichia coli O157:H7 str.
EC4113]
gi|168754545|ref|ZP_02779552.1| DNA-binding protein HU-beta [Escherichia coli O157:H7 str.
EC4401]
gi|168760405|ref|ZP_02785412.1| DNA-binding protein HU-beta [Escherichia coli O157:H7 str.
EC4501]
gi|168768395|ref|ZP_02793402.1| DNA-binding protein HU-beta [Escherichia coli O157:H7 str.
EC4486]
gi|168777136|ref|ZP_02802143.1| DNA-binding protein HU-beta [Escherichia coli O157:H7 str.
EC4196]
gi|168778933|ref|ZP_02803940.1| DNA-binding protein HU-beta [Escherichia coli O157:H7 str.
EC4076]
gi|168786291|ref|ZP_02811298.1| DNA-binding protein HU-beta [Escherichia coli O157:H7 str. EC869]
gi|168798004|ref|ZP_02823011.1| DNA-binding protein HU-beta [Escherichia coli O157:H7 str. EC508]
gi|170021187|ref|YP_001726141.1| transcriptional regulator HU subunit beta [Escherichia coli ATCC
8739]
gi|170080026|ref|YP_001729346.1| HU, DNA-binding transcriptional regulator, beta subunit
[Escherichia coli str. K-12 substr. DH10B]
gi|170681712|ref|YP_001742584.1| transcriptional regulator HU subunit beta [Escherichia coli
SMS-3-5]
gi|170767837|ref|ZP_02902290.1| DNA-binding protein HU-beta [Escherichia albertii TW07627]
gi|187732111|ref|YP_001879151.1| transcriptional regulator HU subunit beta [Shigella boydii CDC
3083-94]
gi|188494441|ref|ZP_03001711.1| DNA-binding protein HU-beta [Escherichia coli 53638]
gi|191169609|ref|ZP_03031324.1| DNA-binding protein HU-beta [Escherichia coli B7A]
gi|191173656|ref|ZP_03035180.1| DNA-binding protein HU-beta [Escherichia coli F11]
gi|193064118|ref|ZP_03045202.1| DNA-binding protein HU-beta [Escherichia coli E22]
gi|193067526|ref|ZP_03048493.1| DNA-binding protein HU-beta [Escherichia coli E110019]
gi|194429030|ref|ZP_03061562.1| DNA-binding protein HU-beta [Escherichia coli B171]
gi|194435314|ref|ZP_03067526.1| DNA-binding protein HU-beta [Shigella dysenteriae 1012]
gi|194437413|ref|ZP_03069510.1| DNA-binding protein HU-beta [Escherichia coli 101-1]
gi|208807585|ref|ZP_03249922.1| DNA-binding protein HU-beta [Escherichia coli O157:H7 str.
EC4206]
gi|208815532|ref|ZP_03256711.1| DNA-binding protein HU-beta [Escherichia coli O157:H7 str.
EC4045]
gi|208823271|ref|ZP_03263589.1| DNA-binding protein HU-beta [Escherichia coli O157:H7 str.
EC4042]
gi|209399224|ref|YP_002269087.1| DNA-binding protein HU-beta [Escherichia coli O157:H7 str.
EC4115]
gi|209917657|ref|YP_002291741.1| transcriptional regulator HU subunit beta [Escherichia coli SE11]
gi|215485521|ref|YP_002327952.1| transcriptional regulator HU subunit beta [Escherichia coli
O127:H6 str. E2348/69]
gi|217324840|ref|ZP_03440924.1| DNA-binding protein HU-beta [Escherichia coli O157:H7 str.
TW14588]
gi|218549892|ref|YP_002383683.1| transcriptional regulator HU subunit beta [Escherichia fergusonii
ATCC 35469]
gi|218553007|ref|YP_002385920.1| transcriptional regulator HU subunit beta [Escherichia coli IAI1]
gi|218557350|ref|YP_002390263.1| transcriptional regulator HU subunit beta [Escherichia coli S88]
gi|218688304|ref|YP_002396516.1| transcriptional regulator HU subunit beta [Escherichia coli ED1a]
gi|218693903|ref|YP_002401570.1| transcriptional regulator HU subunit beta [Escherichia coli
55989]
gi|218698648|ref|YP_002406277.1| transcriptional regulator HU subunit beta [Escherichia coli
IAI39]
gi|218703724|ref|YP_002411243.1| transcriptional regulator HU subunit beta [Escherichia coli
UMN026]
gi|227884549|ref|ZP_04002354.1| DNA-binding protein HU [Escherichia coli 83972]
gi|237707565|ref|ZP_04538046.1| transcriptional regulator HU subunit beta [Escherichia sp.
3_2_53FAA]
gi|238899728|ref|YP_002925524.1| HU, DNA-binding transcriptional regulator, beta subunit
[Escherichia coli BW2952]
gi|253774569|ref|YP_003037400.1| transcriptional regulator HU subunit beta [Escherichia coli
'BL21-Gold(DE3)pLysS AG']
gi|254160510|ref|YP_003043618.1| transcriptional regulator HU subunit beta [Escherichia coli B
str. REL606]
gi|254791624|ref|YP_003076461.1| transcriptional regulator HU subunit beta [Escherichia coli
O157:H7 str. TW14359]
gi|256020412|ref|ZP_05434277.1| transcriptional regulator HU subunit beta [Shigella sp. D9]
gi|256023941|ref|ZP_05437806.1| transcriptional regulator HU subunit beta [Escherichia sp.
4_1_40B]
gi|260842641|ref|YP_003220419.1| HU, DNA-binding transcriptional regulator, beta subunit
[Escherichia coli O103:H2 str. 12009]
gi|260853663|ref|YP_003227554.1| HU, DNA-binding transcriptional regulator, beta subunit
[Escherichia coli O26:H11 str. 11368]
gi|260866601|ref|YP_003233003.1| HU, DNA-binding transcriptional regulator, beta subunit
[Escherichia coli O111:H- str. 11128]
gi|261223923|ref|ZP_05938204.1| transcriptional regulator HU subunit beta [Escherichia coli
O157:H7 str. FRIK2000]
gi|261256363|ref|ZP_05948896.1| transcriptional regulator HU subunit beta [Escherichia coli
O157:H7 str. FRIK966]
gi|291281347|ref|YP_003498165.1| DNA-binding protein HU-beta [Escherichia coli O55:H7 str. CB9615]
gi|293403561|ref|ZP_06647652.1| transcriptional regulator HU subunit alpha [Escherichia coli
FVEC1412]
gi|293408590|ref|ZP_06652429.1| conserved hypothetical protein [Escherichia coli B354]
gi|293413695|ref|ZP_06656344.1| DNA-binding protein HU-beta [Escherichia coli B185]
gi|293418511|ref|ZP_06660946.1| transcriptional regulator HU subunit alpha [Escherichia coli
B088]
gi|298379173|ref|ZP_06989054.1| DNA-binding protein HU-beta [Escherichia coli FVEC1302]
gi|300818228|ref|ZP_07098439.1| DNA-binding protein HU [Escherichia coli MS 107-1]
gi|300820314|ref|ZP_07100466.1| DNA-binding protein HU [Escherichia coli MS 119-7]
gi|300900511|ref|ZP_07118678.1| DNA-binding protein HU [Escherichia coli MS 198-1]
gi|300903292|ref|ZP_07121220.1| DNA-binding protein HU [Escherichia coli MS 84-1]
gi|300918177|ref|ZP_07134784.1| DNA-binding protein HU [Escherichia coli MS 115-1]
gi|300924167|ref|ZP_07140159.1| DNA-binding protein HU [Escherichia coli MS 182-1]
gi|300930257|ref|ZP_07145670.1| DNA-binding protein HU [Escherichia coli MS 187-1]
gi|300937057|ref|ZP_07151923.1| DNA-binding protein HU [Escherichia coli MS 21-1]
gi|300947907|ref|ZP_07162055.1| DNA-binding protein HU [Escherichia coli MS 116-1]
gi|300958008|ref|ZP_07170172.1| DNA-binding protein HU [Escherichia coli MS 175-1]
gi|300988005|ref|ZP_07178485.1| DNA-binding protein HU [Escherichia coli MS 45-1]
gi|300997371|ref|ZP_07181711.1| DNA-binding protein HU [Escherichia coli MS 200-1]
gi|301022566|ref|ZP_07186438.1| DNA-binding protein HU [Escherichia coli MS 69-1]
gi|301025664|ref|ZP_07189182.1| DNA-binding protein HU [Escherichia coli MS 196-1]
gi|301049647|ref|ZP_07196596.1| DNA-binding protein HU [Escherichia coli MS 185-1]
gi|301301591|ref|ZP_07207726.1| DNA-binding protein HU [Escherichia coli MS 124-1]
gi|301330693|ref|ZP_07223295.1| DNA-binding protein HU [Escherichia coli MS 78-1]
gi|301647366|ref|ZP_07247178.1| DNA-binding protein HU [Escherichia coli MS 146-1]
gi|306813092|ref|ZP_07447285.1| transcriptional regulator HU subunit beta [Escherichia coli
NC101]
gi|307137085|ref|ZP_07496441.1| transcriptional regulator HU subunit beta [Escherichia coli H736]
gi|307312182|ref|ZP_07591818.1| histone family protein DNA-binding protein [Escherichia coli W]
gi|309794827|ref|ZP_07689248.1| DNA-binding protein HU [Escherichia coli MS 145-7]
gi|312964535|ref|ZP_07778791.1| DNA-binding protein HU-beta [Escherichia coli 2362-75]
gi|312970537|ref|ZP_07784718.1| DNA-binding protein HU-beta [Escherichia coli 1827-70]
gi|331640960|ref|ZP_08342095.1| DNA-binding protein HU-beta (NS1) (HU-1) [Escherichia coli H736]
gi|331645616|ref|ZP_08346720.1| DNA-binding protein HU-beta (NS1) (HU-1) [Escherichia coli M605]
gi|331651378|ref|ZP_08352403.1| DNA-binding protein HU-beta (NS1) (HU-1) [Escherichia coli M718]
gi|331656497|ref|ZP_08357459.1| DNA-binding protein HU-beta (NS1) (HU-1) [Escherichia coli TA206]
gi|331661821|ref|ZP_08362744.1| DNA-binding protein HU-beta (NS1) (HU-1) [Escherichia coli TA143]
gi|331666796|ref|ZP_08367670.1| DNA-binding protein HU-beta (NS1) (HU-1) [Escherichia coli TA271]
gi|331676112|ref|ZP_08376824.1| DNA-binding protein HU-beta (NS1) (HU-1) [Escherichia coli H591]
gi|331681835|ref|ZP_08382468.1| DNA-binding protein HU-beta (NS1) (HU-1) [Escherichia coli H299]
gi|332281591|ref|ZP_08394004.1| transcriptional regulator HU subunit beta [Shigella sp. D9]
gi|82581654|sp|P0ACF6|DBHB_ECO57 RecName: Full=DNA-binding protein HU-beta; AltName: Full=HU-1;
AltName: Full=NS1
gi|82581655|sp|P0ACF5|DBHB_ECOL6 RecName: Full=DNA-binding protein HU-beta; AltName: Full=HU-1;
AltName: Full=NS1
gi|82581656|sp|P0ACF4|DBHB_ECOLI RecName: Full=DNA-binding protein HU-beta; AltName: Full=HU-1;
AltName: Full=NS1
gi|82581657|sp|P0ACF7|DBHB_SHIFL RecName: Full=DNA-binding protein HU-beta; AltName: Full=HU-1;
AltName: Full=NS1
gi|134105079|pdb|2O97|B Chain B, Crystal Structure Of E. Coli Hu Heterodimer
gi|12513302|gb|AAG54790.1|AE005223_5 DNA-binding protein HU-beta, NS1 (HU-1) [Escherichia coli O157:H7
str. EDL933]
gi|26106849|gb|AAN79034.1|AE016756_217 DNA-binding protein HU-beta [Escherichia coli CFT073]
gi|581106|emb|CAA34539.1| unnamed protein product [Escherichia coli K-12]
gi|1773124|gb|AAB40196.1| DNA-binding protein NS1 [Escherichia coli]
gi|1786644|gb|AAC73543.1| HU, DNA-binding transcriptional regulator, beta subunit
[Escherichia coli str. K-12 substr. MG1655]
gi|13359951|dbj|BAB33917.1| DNA-binding protein HU-1 [Escherichia coli O157:H7 str. Sakai]
gi|24050616|gb|AAN42041.1| DNA-binding protein HU-beta, NS1 (HU-1) [Shigella flexneri 2a
str. 301]
gi|30040186|gb|AAP15919.1| DNA-binding protein HU-beta, NS1 (HU-1) [Shigella flexneri 2a
str. 2457T]
gi|73854492|gb|AAZ87199.1| DNA-binding protein HU-beta [Shigella sonnei Ss046]
gi|81239801|gb|ABB60511.1| DNA-binding protein HU-beta [Shigella dysenteriae Sd197]
gi|81244339|gb|ABB65047.1| DNA-binding protein HU-beta [Shigella boydii Sb227]
gi|85674580|dbj|BAE76220.1| HU, DNA-binding transcriptional regulator, beta subunit
[Escherichia coli str. K12 substr. W3110]
gi|91071088|gb|ABE05969.1| DNA-binding protein HU-beta, NS1 (HU-1) [Escherichia coli UTI89]
gi|110342293|gb|ABG68530.1| DNA-binding protein HU-beta [Escherichia coli 536]
gi|110614016|gb|ABF02683.1| DNA-binding protein HU-beta, NS1 (HU-1) [Shigella flexneri 5 str.
8401]
gi|115511824|gb|ABI99898.1| DNA-binding protein HU-beta, NS1 (HU-1) [Escherichia coli APEC
O1]
gi|157065647|gb|ABV04902.1| DNA-binding protein HU-beta [Escherichia coli HS]
gi|157080625|gb|ABV20333.1| DNA-binding protein HU-beta [Escherichia coli E24377A]
gi|169756115|gb|ACA78814.1| histone family protein DNA-binding protein [Escherichia coli ATCC
8739]
gi|169887861|gb|ACB01568.1| HU, DNA-binding transcriptional regulator, beta subunit
[Escherichia coli str. K-12 substr. DH10B]
gi|170123325|gb|EDS92256.1| DNA-binding protein HU-beta [Escherichia albertii TW07627]
gi|170519430|gb|ACB17608.1| DNA-binding protein HU-beta [Escherichia coli SMS-3-5]
gi|187429103|gb|ACD08377.1| DNA-binding protein HU-beta [Shigella boydii CDC 3083-94]
gi|187767567|gb|EDU31411.1| DNA-binding protein HU-beta [Escherichia coli O157:H7 str.
EC4196]
gi|188017725|gb|EDU55847.1| DNA-binding protein HU-beta [Escherichia coli O157:H7 str.
EC4113]
gi|188489640|gb|EDU64743.1| DNA-binding protein HU-beta [Escherichia coli 53638]
gi|189002751|gb|EDU71737.1| DNA-binding protein HU-beta [Escherichia coli O157:H7 str.
EC4076]
gi|189357994|gb|EDU76413.1| DNA-binding protein HU-beta [Escherichia coli O157:H7 str.
EC4401]
gi|189362520|gb|EDU80939.1| DNA-binding protein HU-beta [Escherichia coli O157:H7 str.
EC4486]
gi|189369140|gb|EDU87556.1| DNA-binding protein HU-beta [Escherichia coli O157:H7 str.
EC4501]
gi|189373754|gb|EDU92170.1| DNA-binding protein HU-beta [Escherichia coli O157:H7 str. EC869]
gi|189379306|gb|EDU97722.1| DNA-binding protein HU-beta [Escherichia coli O157:H7 str. EC508]
gi|190900350|gb|EDV60184.1| DNA-binding protein HU-beta [Escherichia coli B7A]
gi|190906014|gb|EDV65629.1| DNA-binding protein HU-beta [Escherichia coli F11]
gi|192929147|gb|EDV82757.1| DNA-binding protein HU-beta [Escherichia coli E22]
gi|192958938|gb|EDV89374.1| DNA-binding protein HU-beta [Escherichia coli E110019]
gi|194412967|gb|EDX29257.1| DNA-binding protein HU-beta [Escherichia coli B171]
gi|194416446|gb|EDX32603.1| DNA-binding protein HU-beta [Shigella dysenteriae 1012]
gi|194423582|gb|EDX39572.1| DNA-binding protein HU-beta [Escherichia coli 101-1]
gi|208727386|gb|EDZ76987.1| DNA-binding protein HU-beta [Escherichia coli O157:H7 str.
EC4206]
gi|208732180|gb|EDZ80868.1| DNA-binding protein HU-beta [Escherichia coli O157:H7 str.
EC4045]
gi|208737464|gb|EDZ85148.1| DNA-binding protein HU-beta [Escherichia coli O157:H7 str.
EC4042]
gi|209160624|gb|ACI38057.1| DNA-binding protein HU-beta [Escherichia coli O157:H7 str.
EC4115]
gi|209743824|gb|ACI70219.1| DNA-binding protein HU-1 [Escherichia coli]
gi|209743826|gb|ACI70220.1| DNA-binding protein HU-1 [Escherichia coli]
gi|209743828|gb|ACI70221.1| DNA-binding protein HU-1 [Escherichia coli]
gi|209743830|gb|ACI70222.1| DNA-binding protein HU-1 [Escherichia coli]
gi|209743832|gb|ACI70223.1| DNA-binding protein HU-1 [Escherichia coli]
gi|209910916|dbj|BAG75990.1| DNA-binding protein HU-beta [Escherichia coli SE11]
gi|215263593|emb|CAS07923.1| HU, DNA-binding transcriptional regulator, beta subunit
[Escherichia coli O127:H6 str. E2348/69]
gi|217321061|gb|EEC29485.1| DNA-binding protein HU-beta [Escherichia coli O157:H7 str.
TW14588]
gi|218350635|emb|CAU96327.1| HU, DNA-binding transcriptional regulator, beta subunit
[Escherichia coli 55989]
gi|218357433|emb|CAQ90072.1| HU, DNA-binding transcriptional regulator, beta subunit
[Escherichia fergusonii ATCC 35469]
gi|218359775|emb|CAQ97316.1| HU, DNA-binding transcriptional regulator, beta subunit
[Escherichia coli IAI1]
gi|218364119|emb|CAR01784.1| HU, DNA-binding transcriptional regulator, beta subunit
[Escherichia coli S88]
gi|218368634|emb|CAR16373.1| HU, DNA-binding transcriptional regulator, beta subunit
[Escherichia coli IAI39]
gi|218425868|emb|CAR06674.1| HU, DNA-binding transcriptional regulator, beta subunit
[Escherichia coli ED1a]
gi|218430821|emb|CAR11695.1| HU, DNA-binding transcriptional regulator, beta subunit
[Escherichia coli UMN026]
gi|222032235|emb|CAP74974.1| DNA-binding protein HU-beta [Escherichia coli LF82]
gi|226898775|gb|EEH85034.1| transcriptional regulator HU subunit beta [Escherichia sp.
3_2_53FAA]
gi|227838635|gb|EEJ49101.1| DNA-binding protein HU [Escherichia coli 83972]
gi|238861438|gb|ACR63436.1| HU, DNA-binding transcriptional regulator, beta subunit
[Escherichia coli BW2952]
gi|242376222|emb|CAQ30913.1| transcriptional dual regulator HU-beta, NS1 (HU-1), subunit of HU
transcriptional dual regulator [Escherichia coli
BL21(DE3)]
gi|253325613|gb|ACT30215.1| histone family protein DNA-binding protein [Escherichia coli
'BL21-Gold(DE3)pLysS AG']
gi|253972411|gb|ACT38082.1| HU, DNA-binding transcriptional regulator, beta subunit
[Escherichia coli B str. REL606]
gi|253976621|gb|ACT42291.1| HU, DNA-binding transcriptional regulator, beta subunit
[Escherichia coli BL21(DE3)]
gi|254591024|gb|ACT70385.1| HU, DNA-binding transcriptional regulator, beta subunit
[Escherichia coli O157:H7 str. TW14359]
gi|257752312|dbj|BAI23814.1| HU, DNA-binding transcriptional regulator, beta subunit
[Escherichia coli O26:H11 str. 11368]
gi|257757788|dbj|BAI29285.1| HU, DNA-binding transcriptional regulator, beta subunit
[Escherichia coli O103:H2 str. 12009]
gi|257762957|dbj|BAI34452.1| HU, DNA-binding transcriptional regulator, beta subunit
[Escherichia coli O111:H- str. 11128]
gi|260450373|gb|ACX40795.1| histone family protein DNA-binding protein [Escherichia coli DH1]
gi|281177611|dbj|BAI53941.1| DNA-binding protein HU-beta [Escherichia coli SE15]
gi|281599780|gb|ADA72764.1| DNA-binding protein HU-beta [Shigella flexneri 2002017]
gi|284920250|emb|CBG33309.1| DNA-binding protein HU-beta [Escherichia coli 042]
gi|290761220|gb|ADD55181.1| DNA-binding protein HU-beta [Escherichia coli O55:H7 str. CB9615]
gi|291325039|gb|EFE64454.1| transcriptional regulator HU subunit alpha [Escherichia coli
B088]
gi|291429414|gb|EFF02434.1| transcriptional regulator HU subunit alpha [Escherichia coli
FVEC1412]
gi|291433753|gb|EFF06726.1| DNA-binding protein HU-beta [Escherichia coli B185]
gi|291471768|gb|EFF14251.1| conserved hypothetical protein [Escherichia coli B354]
gi|294489973|gb|ADE88729.1| DNA-binding protein HU-beta [Escherichia coli IHE3034]
gi|298280286|gb|EFI21790.1| DNA-binding protein HU-beta [Escherichia coli FVEC1302]
gi|299880018|gb|EFI88229.1| DNA-binding protein HU [Escherichia coli MS 196-1]
gi|300298584|gb|EFJ54969.1| DNA-binding protein HU [Escherichia coli MS 185-1]
gi|300304190|gb|EFJ58710.1| DNA-binding protein HU [Escherichia coli MS 200-1]
gi|300315275|gb|EFJ65059.1| DNA-binding protein HU [Escherichia coli MS 175-1]
gi|300355992|gb|EFJ71862.1| DNA-binding protein HU [Escherichia coli MS 198-1]
gi|300397447|gb|EFJ80985.1| DNA-binding protein HU [Escherichia coli MS 69-1]
gi|300404587|gb|EFJ88125.1| DNA-binding protein HU [Escherichia coli MS 84-1]
gi|300407557|gb|EFJ91095.1| DNA-binding protein HU [Escherichia coli MS 45-1]
gi|300414628|gb|EFJ97938.1| DNA-binding protein HU [Escherichia coli MS 115-1]
gi|300419620|gb|EFK02931.1| DNA-binding protein HU [Escherichia coli MS 182-1]
gi|300452507|gb|EFK16127.1| DNA-binding protein HU [Escherichia coli MS 116-1]
gi|300457888|gb|EFK21381.1| DNA-binding protein HU [Escherichia coli MS 21-1]
gi|300461829|gb|EFK25322.1| DNA-binding protein HU [Escherichia coli MS 187-1]
gi|300527099|gb|EFK48168.1| DNA-binding protein HU [Escherichia coli MS 119-7]
gi|300529119|gb|EFK50181.1| DNA-binding protein HU [Escherichia coli MS 107-1]
gi|300843088|gb|EFK70848.1| DNA-binding protein HU [Escherichia coli MS 124-1]
gi|300843354|gb|EFK71114.1| DNA-binding protein HU [Escherichia coli MS 78-1]
gi|301074511|gb|EFK89317.1| DNA-binding protein HU [Escherichia coli MS 146-1]
gi|305853855|gb|EFM54294.1| transcriptional regulator HU subunit beta [Escherichia coli
NC101]
gi|306907684|gb|EFN38186.1| histone family protein DNA-binding protein [Escherichia coli W]
gi|307552347|gb|ADN45122.1| DNA-binding protein HU [Escherichia coli ABU 83972]
gi|307628090|gb|ADN72394.1| transcriptional regulator HU subunit beta [Escherichia coli
UM146]
gi|308121480|gb|EFO58742.1| DNA-binding protein HU [Escherichia coli MS 145-7]
gi|309700701|emb|CBI99997.1| DNA-binding protein HU-beta [Escherichia coli ETEC H10407]
gi|310337186|gb|EFQ02324.1| DNA-binding protein HU-beta [Escherichia coli 1827-70]
gi|312290769|gb|EFR18646.1| DNA-binding protein HU-beta [Escherichia coli 2362-75]
gi|312945018|gb|ADR25845.1| transcriptional regulator HU subunit beta [Escherichia coli
O83:H1 str. NRG 857C]
gi|313646933|gb|EFS11390.1| DNA-binding protein HU-beta [Shigella flexneri 2a str. 2457T]
gi|315059720|gb|ADT74047.1| HU, DNA-binding transcriptional regulator, beta subunit
[Escherichia coli W]
gi|315135122|dbj|BAJ42281.1| DNA-binding protein HU-beta [Escherichia coli DH1]
gi|315256268|gb|EFU36236.1| DNA-binding protein HU [Escherichia coli MS 85-1]
gi|315289842|gb|EFU49232.1| DNA-binding protein HU [Escherichia coli MS 110-3]
gi|315294226|gb|EFU53577.1| DNA-binding protein HU [Escherichia coli MS 153-1]
gi|315299564|gb|EFU58812.1| DNA-binding protein HU [Escherichia coli MS 16-3]
gi|315616619|gb|EFU97236.1| DNA-binding protein HU-beta [Escherichia coli 3431]
gi|320173740|gb|EFW48923.1| DNA-binding protein HU-beta [Shigella dysenteriae CDC 74-1112]
gi|320178278|gb|EFW53252.1| DNA-binding protein HU-beta [Shigella boydii ATCC 9905]
gi|320186070|gb|EFW60815.1| DNA-binding protein HU-beta [Shigella flexneri CDC 796-83]
gi|320192856|gb|EFW67496.1| DNA-binding protein HU-beta [Escherichia coli O157:H7 str.
EC1212]
gi|320197086|gb|EFW71705.1| DNA-binding protein HU-beta [Escherichia coli WV_060327]
gi|320201684|gb|EFW76260.1| DNA-binding protein HU-beta [Escherichia coli EC4100B]
gi|320638435|gb|EFX08149.1| transcriptional regulator HU subunit beta [Escherichia coli
O157:H7 str. G5101]
gi|320643816|gb|EFX12939.1| transcriptional regulator HU subunit beta [Escherichia coli
O157:H- str. 493-89]
gi|320649167|gb|EFX17745.1| transcriptional regulator HU subunit beta [Escherichia coli
O157:H- str. H 2687]
gi|320656060|gb|EFX23976.1| transcriptional regulator HU subunit beta [Escherichia coli
O55:H7 str. 3256-97 TW 07815]
gi|320661210|gb|EFX28641.1| transcriptional regulator HU subunit beta [Escherichia coli
O55:H7 str. USDA 5905]
gi|320665186|gb|EFX32279.1| transcriptional regulator HU subunit beta [Escherichia coli
O157:H7 str. LSU-61]
gi|323153477|gb|EFZ39731.1| DNA-binding protein HU-beta [Escherichia coli EPECa14]
gi|323160449|gb|EFZ46397.1| DNA-binding protein HU-beta [Escherichia coli E128010]
gi|323164241|gb|EFZ50048.1| DNA-binding protein HU-beta [Shigella sonnei 53G]
gi|323170527|gb|EFZ56177.1| DNA-binding protein HU-beta [Escherichia coli LT-68]
gi|323178291|gb|EFZ63869.1| DNA-binding protein HU-beta [Escherichia coli 1180]
gi|323184729|gb|EFZ70100.1| DNA-binding protein HU-beta [Escherichia coli 1357]
gi|323191360|gb|EFZ76623.1| DNA-binding protein HU-beta [Escherichia coli RN587/1]
gi|323379715|gb|ADX51983.1| histone family protein DNA-binding protein [Escherichia coli
KO11]
gi|323938626|gb|EGB34875.1| bacterial DNA-binding protein [Escherichia coli E1520]
gi|323943247|gb|EGB39403.1| DNA-binding protein [Escherichia coli E482]
gi|323945346|gb|EGB41402.1| bacterial DNA-binding protein [Escherichia coli H120]
gi|323952948|gb|EGB48816.1| DNA-binding protein [Escherichia coli H252]
gi|323958633|gb|EGB54336.1| DNA-binding protein [Escherichia coli H263]
gi|323963430|gb|EGB58992.1| DNA-binding protein [Escherichia coli H489]
gi|323965127|gb|EGB60586.1| DNA-binding protein [Escherichia coli M863]
gi|323972294|gb|EGB67504.1| DNA-binding protein [Escherichia coli TA007]
gi|323976075|gb|EGB71168.1| DNA-binding protein [Escherichia coli TW10509]
gi|324010071|gb|EGB79290.1| DNA-binding protein HU [Escherichia coli MS 57-2]
gi|324010654|gb|EGB79873.1| DNA-binding protein HU [Escherichia coli MS 60-1]
gi|324016699|gb|EGB85918.1| DNA-binding protein HU [Escherichia coli MS 117-3]
gi|324114667|gb|EGC08635.1| DNA-binding protein [Escherichia fergusonii B253]
gi|324116928|gb|EGC10841.1| DNA-binding protein [Escherichia coli E1167]
gi|325498269|gb|EGC96128.1| transcriptional regulator HU subunit beta [Escherichia fergusonii
ECD227]
gi|326341204|gb|EGD64996.1| DNA-binding protein HU-beta [Escherichia coli O157:H7 str. 1044]
gi|326346021|gb|EGD69760.1| DNA-binding protein HU-beta [Escherichia coli O157:H7 str. 1125]
gi|327254768|gb|EGE66384.1| DNA-binding protein HU-beta [Escherichia coli STEC_7v]
gi|330910234|gb|EGH38744.1| DNA-binding protein HU-beta [Escherichia coli AA86]
gi|331037758|gb|EGI09978.1| DNA-binding protein HU-beta (NS1) (HU-1) [Escherichia coli H736]
gi|331045778|gb|EGI17904.1| DNA-binding protein HU-beta (NS1) (HU-1) [Escherichia coli M605]
gi|331051119|gb|EGI23171.1| DNA-binding protein HU-beta (NS1) (HU-1) [Escherichia coli M718]
gi|331054745|gb|EGI26754.1| DNA-binding protein HU-beta (NS1) (HU-1) [Escherichia coli TA206]
gi|331060243|gb|EGI32207.1| DNA-binding protein HU-beta (NS1) (HU-1) [Escherichia coli TA143]
gi|331066020|gb|EGI37904.1| DNA-binding protein HU-beta (NS1) (HU-1) [Escherichia coli TA271]
gi|331076170|gb|EGI47452.1| DNA-binding protein HU-beta (NS1) (HU-1) [Escherichia coli H591]
gi|331081037|gb|EGI52202.1| DNA-binding protein HU-beta (NS1) (HU-1) [Escherichia coli H299]
gi|332085888|gb|EGI91052.1| DNA-binding protein HU-beta [Shigella dysenteriae 155-74]
gi|332094596|gb|EGI99642.1| DNA-binding protein HU-beta [Shigella boydii 5216-82]
gi|332098606|gb|EGJ03572.1| DNA-binding protein HU-beta [Shigella boydii 3594-74]
gi|332103943|gb|EGJ07289.1| transcriptional regulator HU subunit beta [Shigella sp. D9]
gi|332341804|gb|AEE55138.1| transcriptional regulator protein HU, subunit beta HupB
[Escherichia coli UMNK88]
gi|332761491|gb|EGJ91773.1| DNA-binding protein HU-beta [Shigella flexneri 2747-71]
gi|332763739|gb|EGJ93977.1| DNA-binding protein HU-beta [Shigella flexneri K-671]
gi|333007920|gb|EGK27396.1| DNA-binding protein HU-beta [Shigella flexneri K-218]
gi|333008126|gb|EGK27601.1| DNA-binding protein HU-beta [Shigella flexneri VA-6]
gi|333010901|gb|EGK30327.1| DNA-binding protein HU-beta [Shigella flexneri K-272]
gi|333020703|gb|EGK39963.1| DNA-binding protein HU-beta [Shigella flexneri K-227]
gi|333021963|gb|EGK41211.1| DNA-binding protein HU-beta [Shigella flexneri K-304]
Length = 90
Score = 102 bits (255), Expect = 2e-20, Method: Composition-based stats.
Identities = 34/91 (37%), Positives = 53/91 (58%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI IA ++ + ++ ++ +T++L G V + GFG+F+V++RAAR
Sbjct: 1 MNKSQLIDKIAA-GADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P K I++ VP FRAGK LK+ +N
Sbjct: 60 GRNPQTGKEITIAAAKVPSFRAGKALKDAVN 90
>gi|304315774|ref|YP_003850919.1| histone family protein DNA-binding protein [Thermoanaerobacterium
thermosaccharolyticum DSM 571]
gi|302777276|gb|ADL67835.1| histone family protein DNA-binding protein [Thermoanaerobacterium
thermosaccharolyticum DSM 571]
Length = 91
Score = 102 bits (255), Expect = 2e-20, Method: Composition-based stats.
Identities = 35/92 (38%), Positives = 59/92 (64%), Gaps = 1/92 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ L+ IA+K+ +L +D EK +N ++ + +AL G +V++ GFG+F VR+RA R
Sbjct: 1 MNKADLVTKIAEKS-ELTKKDAEKALNAFVDAVQEALKQGDKVQLVGFGTFEVRERAERK 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P ++ I++ P F+AGK LK+ +N+
Sbjct: 60 GRNPQTKEEITIPASKAPVFKAGKALKDLVNA 91
>gi|229543995|ref|ZP_04433054.1| histone family protein DNA-binding protein [Bacillus coagulans
36D1]
gi|229325134|gb|EEN90810.1| histone family protein DNA-binding protein [Bacillus coagulans
36D1]
Length = 90
Score = 102 bits (255), Expect = 2e-20, Method: Composition-based stats.
Identities = 35/91 (38%), Positives = 55/91 (60%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI +A+ +L+ +D K V+ + + + ALANG +V++ GFG+F VR+RAAR
Sbjct: 1 MNKTDLINAVAEAT-ELSKKDTTKAVDAIFDTIQNALANGDKVQLIGFGNFEVRERAARK 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + I + VP F+ GK LK+ +
Sbjct: 60 GRNPQTGEEIDIAASKVPAFKPGKALKDAVK 90
>gi|319404926|emb|CBI78526.1| integration host factor beta chain [Bartonella sp. AR 15-3]
Length = 92
Score = 102 bits (255), Expect = 2e-20, Method: Composition-based stats.
Identities = 47/92 (51%), Positives = 67/92 (72%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M+KS L+ IA+ NP L +D E +V+ + EE++ ALANG RVE+RGFG+FS++ R+AR
Sbjct: 1 MVKSKLVQIIARHNPHLMQRDAENVVSAIFEEISAALANGQRVELRGFGAFSIKARSARN 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P + + VEEK VPFF+ GK+L++RLN
Sbjct: 61 GRNPRTGEAVMVEEKWVPFFKTGKDLRDRLNK 92
>gi|15641921|ref|NP_231553.1| DNA-binding protein HU-beta [Vibrio cholerae O1 biovar El Tor
str. N16961]
gi|121591617|ref|ZP_01678865.1| DNA-binding protein HU-beta [Vibrio cholerae 2740-80]
gi|121727834|ref|ZP_01680901.1| DNA-binding protein HU-beta [Vibrio cholerae V52]
gi|147673385|ref|YP_001217452.1| DNA-binding protein HU-beta [Vibrio cholerae O395]
gi|153820106|ref|ZP_01972773.1| DNA-binding protein HU-beta [Vibrio cholerae NCTC 8457]
gi|153823843|ref|ZP_01976510.1| DNA-binding protein HU-beta [Vibrio cholerae B33]
gi|153827659|ref|ZP_01980326.1| DNA-binding protein HU-beta [Vibrio cholerae MZO-2]
gi|183179757|ref|ZP_02957968.1| DNA-binding protein HU-beta [Vibrio cholerae MZO-3]
gi|227082049|ref|YP_002810600.1| DNA-binding protein HU-beta [Vibrio cholerae M66-2]
gi|229507985|ref|ZP_04397490.1| DNA-binding protein HU-beta [Vibrio cholerae BX 330286]
gi|229511778|ref|ZP_04401257.1| DNA-binding protein HU-beta [Vibrio cholerae B33]
gi|229515305|ref|ZP_04404765.1| DNA-binding protein HU-beta [Vibrio cholerae TMA 21]
gi|229518915|ref|ZP_04408358.1| DNA-binding protein HU-beta [Vibrio cholerae RC9]
gi|229521841|ref|ZP_04411258.1| DNA-binding protein HU-beta [Vibrio cholerae TM 11079-80]
gi|229523939|ref|ZP_04413344.1| DNA-binding protein HU-beta [Vibrio cholerae bv. albensis VL426]
gi|229529055|ref|ZP_04418445.1| DNA-binding protein HU-beta [Vibrio cholerae 12129(1)]
gi|229607531|ref|YP_002878179.1| DNA-binding protein HU-beta [Vibrio cholerae MJ-1236]
gi|254286720|ref|ZP_04961674.1| DNA-binding protein HU-beta [Vibrio cholerae AM-19226]
gi|254849007|ref|ZP_05238357.1| DNA-binding protein HU-beta [Vibrio cholerae MO10]
gi|255745322|ref|ZP_05419271.1| DNA-binding protein HU-beta [Vibrio cholera CIRS 101]
gi|258621305|ref|ZP_05716339.1| DNA-binding protein HU-beta [Vibrio mimicus VM573]
gi|258625371|ref|ZP_05720268.1| DNA-binding protein HU-beta [Vibrio mimicus VM603]
gi|262156046|ref|ZP_06029166.1| DNA-binding protein HU-beta [Vibrio cholerae INDRE 91/1]
gi|262166049|ref|ZP_06033786.1| DNA-binding protein HU-beta [Vibrio mimicus VM223]
gi|262167881|ref|ZP_06035581.1| DNA-binding protein HU-beta [Vibrio cholerae RC27]
gi|262171086|ref|ZP_06038764.1| DNA-binding protein HU-beta [Vibrio mimicus MB-451]
gi|262404272|ref|ZP_06080827.1| DNA-binding protein HU-beta [Vibrio sp. RC586]
gi|297579437|ref|ZP_06941365.1| DNA-binding protein HU-beta [Vibrio cholerae RC385]
gi|298498043|ref|ZP_07007850.1| DNA-binding protein HU-beta [Vibrio cholerae MAK 757]
gi|14194651|sp|Q9KQS9|DBHB_VIBCH RecName: Full=DNA-binding protein HU-beta
gi|9656454|gb|AAF95067.1| DNA-binding protein HU-beta [Vibrio cholerae O1 biovar El Tor
str. N16961]
gi|121546530|gb|EAX56738.1| DNA-binding protein HU-beta [Vibrio cholerae 2740-80]
gi|121629870|gb|EAX62284.1| DNA-binding protein HU-beta [Vibrio cholerae V52]
gi|126509348|gb|EAZ71942.1| DNA-binding protein HU-beta [Vibrio cholerae NCTC 8457]
gi|126518640|gb|EAZ75863.1| DNA-binding protein HU-beta [Vibrio cholerae B33]
gi|146315268|gb|ABQ19807.1| DNA-binding protein HU-beta [Vibrio cholerae O395]
gi|149737865|gb|EDM52770.1| DNA-binding protein HU-beta [Vibrio cholerae MZO-2]
gi|150423147|gb|EDN15094.1| DNA-binding protein HU-beta [Vibrio cholerae AM-19226]
gi|183013168|gb|EDT88468.1| DNA-binding protein HU-beta [Vibrio cholerae MZO-3]
gi|227009937|gb|ACP06149.1| DNA-binding protein HU-beta [Vibrio cholerae M66-2]
gi|227013817|gb|ACP10027.1| DNA-binding protein HU-beta [Vibrio cholerae O395]
gi|229332829|gb|EEN98315.1| DNA-binding protein HU-beta [Vibrio cholerae 12129(1)]
gi|229337520|gb|EEO02537.1| DNA-binding protein HU-beta [Vibrio cholerae bv. albensis VL426]
gi|229340766|gb|EEO05771.1| DNA-binding protein HU-beta [Vibrio cholerae TM 11079-80]
gi|229343604|gb|EEO08579.1| DNA-binding protein HU-beta [Vibrio cholerae RC9]
gi|229348010|gb|EEO12969.1| DNA-binding protein HU-beta [Vibrio cholerae TMA 21]
gi|229351743|gb|EEO16684.1| DNA-binding protein HU-beta [Vibrio cholerae B33]
gi|229355490|gb|EEO20411.1| DNA-binding protein HU-beta [Vibrio cholerae BX 330286]
gi|229370186|gb|ACQ60609.1| DNA-binding protein HU-beta [Vibrio cholerae MJ-1236]
gi|254844712|gb|EET23126.1| DNA-binding protein HU-beta [Vibrio cholerae MO10]
gi|255737152|gb|EET92548.1| DNA-binding protein HU-beta [Vibrio cholera CIRS 101]
gi|258582362|gb|EEW07214.1| DNA-binding protein HU-beta [Vibrio mimicus VM603]
gi|258586693|gb|EEW11408.1| DNA-binding protein HU-beta [Vibrio mimicus VM573]
gi|261892162|gb|EEY38148.1| DNA-binding protein HU-beta [Vibrio mimicus MB-451]
gi|262023608|gb|EEY42309.1| DNA-binding protein HU-beta [Vibrio cholerae RC27]
gi|262025765|gb|EEY44433.1| DNA-binding protein HU-beta [Vibrio mimicus VM223]
gi|262030224|gb|EEY48868.1| DNA-binding protein HU-beta [Vibrio cholerae INDRE 91/1]
gi|262349304|gb|EEY98442.1| DNA-binding protein HU-beta [Vibrio sp. RC586]
gi|297537031|gb|EFH75864.1| DNA-binding protein HU-beta [Vibrio cholerae RC385]
gi|297542376|gb|EFH78426.1| DNA-binding protein HU-beta [Vibrio cholerae MAK 757]
gi|327484463|gb|AEA78870.1| DNA-binding protein HU-beta [Vibrio cholerae LMA3894-4]
Length = 90
Score = 102 bits (255), Expect = 2e-20, Method: Composition-based stats.
Identities = 34/91 (37%), Positives = 52/91 (57%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ L+ IA N ++ + ++ +E ++ L +G +V + GFG+FSVR RAAR
Sbjct: 1 MNKTQLVEQIAA-NADISKASAGRALDAFIEAVSGTLQSGDQVALVGFGTFSVRTRAART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + I + E VP F+AGK LK+ N
Sbjct: 60 GRNPKTGEEIKIAEAKVPSFKAGKALKDACN 90
>gi|291613626|ref|YP_003523783.1| histone family protein DNA-binding protein [Sideroxydans
lithotrophicus ES-1]
gi|291583738|gb|ADE11396.1| histone family protein DNA-binding protein [Sideroxydans
lithotrophicus ES-1]
Length = 98
Score = 102 bits (254), Expect = 2e-20, Method: Composition-based stats.
Identities = 40/97 (41%), Positives = 60/97 (61%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M +S LI +A ++P+L D+E V ++L++++ L N RVEIRGFG+F+ R R
Sbjct: 1 MTRSELIQQLASRHPELTSNDIEMSVRLILDKISSVLENKARVEIRGFGTFATLHRPPRN 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDSTL 97
P KV+ V K VP FRAGK L+ R+N +S++
Sbjct: 61 GHNPKTGKVVKVPAKYVPHFRAGKELRVRVNHGNSSI 97
>gi|157692778|ref|YP_001487240.1| non-specific DNA-binding protein HBsu [Bacillus pumilus SAFR-032]
gi|194016903|ref|ZP_03055516.1| DNA-binding protein HU 1 (DNA-binding protein II) (HB) [Bacillus
pumilus ATCC 7061]
gi|157681536|gb|ABV62680.1| non-specific DNA-binding protein HBsu [Bacillus pumilus SAFR-032]
gi|194011509|gb|EDW21078.1| DNA-binding protein HU 1 (DNA-binding protein II) (HB) [Bacillus
pumilus ATCC 7061]
Length = 92
Score = 102 bits (254), Expect = 2e-20, Method: Composition-based stats.
Identities = 32/90 (35%), Positives = 54/90 (60%), Gaps = 1/90 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI +A+ + +L+ +D K V+ + + + AL NG ++++ GFG+F VR+R+AR
Sbjct: 1 MNKTELINAVAEAS-ELSKKDATKAVDSVFDTILDALKNGDKIQLIGFGNFEVRERSARK 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P I + VP F+ GK LK+ +
Sbjct: 60 GRNPQTGAEIEIPASKVPAFKPGKALKDAV 89
>gi|110633525|ref|YP_673733.1| histone-like DNA-binding protein [Mesorhizobium sp. BNC1]
gi|110284509|gb|ABG62568.1| bacterial nucleoid protein Hbs [Chelativorans sp. BNC1]
Length = 90
Score = 102 bits (254), Expect = 2e-20, Method: Composition-based stats.
Identities = 32/91 (35%), Positives = 50/91 (54%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ L+ +A+K L+ D + V+ + +T L +GG V + GFG+FSV +R A
Sbjct: 1 MNKNELVSAVAEK-AGLSKGDAQSAVDAVFSVITGELKSGGDVRLVGFGNFSVSRREAST 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + + + VP F AGK LK+ +N
Sbjct: 60 GRNPQTGAEVKIPARNVPKFSAGKGLKDAIN 90
>gi|254469567|ref|ZP_05082972.1| bacterial nucleoid DNA-binding protein [Pseudovibrio sp. JE062]
gi|211961402|gb|EEA96597.1| bacterial nucleoid DNA-binding protein [Pseudovibrio sp. JE062]
Length = 91
Score = 102 bits (254), Expect = 2e-20, Method: Composition-based stats.
Identities = 35/92 (38%), Positives = 49/92 (53%), Gaps = 1/92 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LIG +A+K L + V E +T+ L +G V I GFG+FSV RAA
Sbjct: 1 MNKNDLIGAVAEKT-GLTKAQAGEAVEASFEAITETLKSGDEVRIIGFGNFSVSARAATE 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P + I + P F+AGK LK+ +N+
Sbjct: 60 GRNPRTGETIQIPASKTPKFKAGKGLKDAVNA 91
>gi|237807858|ref|YP_002892298.1| histone family protein DNA-binding protein [Tolumonas auensis DSM
9187]
gi|237500119|gb|ACQ92712.1| histone family protein DNA-binding protein [Tolumonas auensis DSM
9187]
Length = 90
Score = 102 bits (254), Expect = 2e-20, Method: Composition-based stats.
Identities = 30/91 (32%), Positives = 53/91 (58%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS L+ I++ + ++ + ++ +E + +AL +G +V + GFG+F+VR+RA+R
Sbjct: 1 MNKSQLVDKISE-SADISKAAAGRALDAFIEAVGEALKDGDQVSLVGFGTFAVRERASRS 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P I + P F+AGK LK+ +N
Sbjct: 60 GRNPQTGATIEIAACKQPAFKAGKALKDSVN 90
>gi|90961862|ref|YP_535778.1| DNA-binding protein HU [Lactobacillus salivarius UCC118]
gi|301299465|ref|ZP_07205740.1| DNA-binding protein HU [Lactobacillus salivarius ACS-116-V-Col5a]
gi|90821056|gb|ABD99695.1| DNA-binding protein HU [Lactobacillus salivarius UCC118]
gi|300852928|gb|EFK80537.1| DNA-binding protein HU [Lactobacillus salivarius ACS-116-V-Col5a]
Length = 91
Score = 102 bits (254), Expect = 2e-20, Method: Composition-based stats.
Identities = 33/90 (36%), Positives = 53/90 (58%), Gaps = 1/90 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K++LI +A+K L +D V+ + E + AL +G +V++ GFG+F VR+RAAR
Sbjct: 3 NKAALIERVAEKT-GLTKKDATVAVDAVFETIQDALVDGEKVQLIGFGNFEVRERAARKG 61
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + I + VP F+ GK+LK+ +
Sbjct: 62 RNPQTGEEIEIPASKVPAFKPGKSLKDAVK 91
>gi|260913658|ref|ZP_05920134.1| integration host factor subunit beta [Pasteurella dagmatis ATCC
43325]
gi|260632197|gb|EEX50372.1| integration host factor subunit beta [Pasteurella dagmatis ATCC
43325]
Length = 94
Score = 102 bits (254), Expect = 2e-20, Method: Composition-based stats.
Identities = 41/91 (45%), Positives = 62/91 (68%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI + +K+P ++ +DVE V +L++M+ AL NG R+E+RGFGSFS+ R RL
Sbjct: 1 MTKSELIERLVQKHPSISAKDVENSVKEILDQMSFALENGKRIEVRGFGSFSLHYRQPRL 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + + ++ K VP F+AGK L+ER++
Sbjct: 61 GRNPKTGEQVKLDAKSVPHFKAGKELRERVD 91
>gi|238022457|ref|ZP_04602883.1| hypothetical protein GCWU000324_02365 [Kingella oralis ATCC
51147]
gi|237867071|gb|EEP68113.1| hypothetical protein GCWU000324_02365 [Kingella oralis ATCC
51147]
Length = 102
Score = 102 bits (254), Expect = 2e-20, Method: Composition-based stats.
Identities = 38/98 (38%), Positives = 59/98 (60%), Gaps = 6/98 (6%)
Query: 1 MIKSSLIGTIAK------KNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVR 54
M KS L+ +A+ + +L +D+E V +L++ MT++LA G R+EIRGFGSF +
Sbjct: 1 MTKSELMARLAELFIENNEGTELQAKDIEYGVKVLVDTMTRSLAKGQRIEIRGFGSFDLN 60
Query: 55 KRAARLARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R R+ R P + + V K VP F+ GK L+ER++
Sbjct: 61 YRPPRVGRNPKTGERVEVPAKRVPHFKPGKELRERVDQ 98
>gi|170727450|ref|YP_001761476.1| histone family protein DNA-binding protein [Shewanella woodyi
ATCC 51908]
gi|169812797|gb|ACA87381.1| histone family protein DNA-binding protein [Shewanella woodyi
ATCC 51908]
Length = 90
Score = 102 bits (254), Expect = 2e-20, Method: Composition-based stats.
Identities = 31/91 (34%), Positives = 49/91 (53%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI IA ++ + ++ +E +T L +G ++ + GFG+F VR+RA R
Sbjct: 1 MNKSELIEKIA-SGADISKAAAGRALDSFIEAVTDGLKDGDKISLVGFGTFEVRQRAERT 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P I + +P F+AGK LK+ +N
Sbjct: 60 GRNPQTGAEIKIAAANIPAFKAGKALKDAVN 90
>gi|83644982|ref|YP_433417.1| nucleoid DNA-binding protein [Hahella chejuensis KCTC 2396]
gi|83633025|gb|ABC28992.1| Bacterial nucleoid DNA-binding protein [Hahella chejuensis KCTC
2396]
Length = 90
Score = 102 bits (254), Expect = 2e-20, Method: Composition-based stats.
Identities = 34/91 (37%), Positives = 55/91 (60%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI +A + ++ + ++ ++E +T+AL G +V + GFG+FSV++RAAR
Sbjct: 1 MNKSELIDAVAA-SADISKAAAGRALDAVVESVTEALKKGEQVTLIGFGTFSVKERAART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P I ++ VP F+AGK LK+ +N
Sbjct: 60 GRNPQTGATIKIDAAKVPSFKAGKALKDAVN 90
>gi|229085283|ref|ZP_04217525.1| DNA-binding protein HU [Bacillus cereus Rock3-44]
gi|228698002|gb|EEL50745.1| DNA-binding protein HU [Bacillus cereus Rock3-44]
Length = 90
Score = 102 bits (254), Expect = 2e-20, Method: Composition-based stats.
Identities = 34/91 (37%), Positives = 52/91 (57%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI +A + ++ +D V + + +T AL G +V++ GFG+F VR+RAAR
Sbjct: 1 MNKTELIKNVA-QTADISQKDASVAVQSVFDAITNALQTGDKVQLIGFGTFEVRERAART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + I + VP F+AGK LKE +
Sbjct: 60 GRNPQTGEEIQIAAGKVPAFKAGKELKEAVK 90
>gi|114565657|ref|YP_752811.1| DNA-binding protein HU [Syntrophomonas wolfei subsp. wolfei str.
Goettingen]
gi|114336592|gb|ABI67440.1| bacterial nucleoid protein Hbs [Syntrophomonas wolfei subsp.
wolfei str. Goettingen]
Length = 90
Score = 102 bits (254), Expect = 2e-20, Method: Composition-based stats.
Identities = 35/90 (38%), Positives = 52/90 (57%), Gaps = 1/90 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ L+G +A K + +DVEK+VN + + L +V++ GFG+F VR R AR
Sbjct: 1 MNKTELVGQVAAKT-GMTKKDVEKVVNAFFDTVEGVLKEDDKVQLIGFGTFEVRARQARK 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P + I++ VP F+AGK LK+ L
Sbjct: 60 GRNPQTGEEINIPATKVPAFKAGKALKDAL 89
>gi|237809330|ref|YP_002893770.1| histone family protein DNA-binding protein [Tolumonas auensis DSM
9187]
gi|237501591|gb|ACQ94184.1| histone family protein DNA-binding protein [Tolumonas auensis DSM
9187]
Length = 91
Score = 102 bits (254), Expect = 2e-20, Method: Composition-based stats.
Identities = 33/91 (36%), Positives = 51/91 (56%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ L+ IA K ++ + + +LE +TQ+L G V++ GFG+F V RA+R
Sbjct: 1 MNKTELVDAIAAK-ADMSKAQAKVALEQILETITQSLKEGDPVQLVGFGTFKVNHRASRT 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + I++ VP F AGK LK+ +N
Sbjct: 60 GRNPQTGQEITIAASNVPTFVAGKALKDAVN 90
>gi|332971724|gb|EGK10672.1| DNA-binding protein HU [Desmospora sp. 8437]
Length = 90
Score = 102 bits (254), Expect = 2e-20, Method: Composition-based stats.
Identities = 35/91 (38%), Positives = 53/91 (58%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI +A+ K ++ +V +L+ + +AL NG +V + GFG+F VR+RAAR
Sbjct: 1 MNKTELIERVAESTGK-TKKESAHLVEAVLDSIAEALRNGEKVSLIGFGNFEVRERAART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + I + VP F+ GK LKE +N
Sbjct: 60 GRNPQTGEPIEIGASKVPAFKPGKQLKEAVN 90
>gi|228961970|ref|ZP_04123500.1| DNA-binding protein HU [Bacillus thuringiensis serovar pakistani
str. T13001]
gi|228797708|gb|EEM44791.1| DNA-binding protein HU [Bacillus thuringiensis serovar pakistani
str. T13001]
Length = 91
Score = 102 bits (254), Expect = 2e-20, Method: Composition-based stats.
Identities = 39/92 (42%), Positives = 53/92 (57%), Gaps = 1/92 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI +A K L V+ LLE + QAL NG V++ GFG+F VR+RAAR
Sbjct: 1 MNKTELITQVAVKT-GLKKSQASLAVDTLLESIQQALQNGDNVQLLGFGTFEVRERAARE 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P + + + K P F+AGK LKE +N+
Sbjct: 60 GRNPSTGESLVIPAKKAPAFKAGKVLKEAVNN 91
>gi|170720930|ref|YP_001748618.1| histone family protein DNA-binding protein [Pseudomonas putida
W619]
gi|169758933|gb|ACA72249.1| histone family protein DNA-binding protein [Pseudomonas putida
W619]
Length = 90
Score = 102 bits (254), Expect = 2e-20, Method: Composition-based stats.
Identities = 34/91 (37%), Positives = 51/91 (56%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI IA + + + ++ +++ +T AL G V + GFG+FSV++RA R
Sbjct: 1 MNKSELIDAIAA-SADIPKAVAGRALDAVIDSVTGALKAGDDVVLVGFGTFSVKERAERD 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P K I + VP F+AGK LK+ +N
Sbjct: 60 GRNPQTGKTIKIAAAKVPGFKAGKGLKDAVN 90
>gi|294139097|ref|YP_003555075.1| HU family DNA-binding protein [Shewanella violacea DSS12]
gi|293325566|dbj|BAJ00297.1| DNA-binding protein, HU family [Shewanella violacea DSS12]
Length = 91
Score = 102 bits (254), Expect = 2e-20, Method: Composition-based stats.
Identities = 33/92 (35%), Positives = 49/92 (53%), Gaps = 1/92 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ L+ IA+ N L + + + E +T+ L +G ++ I GFGSF RAAR
Sbjct: 1 MNKTELVAKIAE-NADLTKAEAARALKSFEETITETLKSGDKISIVGFGSFETTNRAART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P + I + VP F+AGK LK+ +N
Sbjct: 60 GRNPQTGQEIQIPAATVPKFKAGKTLKDSVNQ 91
>gi|54294745|ref|YP_127160.1| hypothetical protein lpl1822 [Legionella pneumophila str. Lens]
gi|54297775|ref|YP_124144.1| hypothetical protein lpp1826 [Legionella pneumophila str. Paris]
gi|148359403|ref|YP_001250610.1| hypothetical protein LPC_1303 [Legionella pneumophila str. Corby]
gi|296107449|ref|YP_003619149.1| hypothetical protein lpa_02684 [Legionella pneumophila 2300/99
Alcoy]
gi|53751560|emb|CAH12978.1| hypothetical protein lpp1826 [Legionella pneumophila str. Paris]
gi|53754577|emb|CAH16061.1| hypothetical protein lpl1822 [Legionella pneumophila str. Lens]
gi|148281176|gb|ABQ55264.1| hypothetical protein LPC_1303 [Legionella pneumophila str. Corby]
gi|295649350|gb|ADG25197.1| hypothetical protein lpa_02684 [Legionella pneumophila 2300/99
Alcoy]
gi|307610561|emb|CBX00149.1| hypothetical protein LPW_18941 [Legionella pneumophila 130b]
Length = 92
Score = 102 bits (254), Expect = 2e-20, Method: Composition-based stats.
Identities = 35/90 (38%), Positives = 47/90 (52%), Gaps = 1/90 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS L+ IA L D +++ + +T L G +V I GFGSFS R+AR
Sbjct: 1 MNKSELVDAIA-SGSGLTKADASRVLETFMATVTDVLKKGDQVVIPGFGSFSTGNRSART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P K I ++ V F+AGKNLKE +
Sbjct: 60 GRNPQTGKTIQIKASRVAKFKAGKNLKEAV 89
>gi|293392542|ref|ZP_06636862.1| DNA-binding protein HU-beta [Serratia odorifera DSM 4582]
gi|291424944|gb|EFE98153.1| DNA-binding protein HU-beta [Serratia odorifera DSM 4582]
Length = 90
Score = 102 bits (254), Expect = 2e-20, Method: Composition-based stats.
Identities = 35/91 (38%), Positives = 51/91 (56%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI IA ++ + ++ ++ +T +L G V + GFGSF+VR+R+AR
Sbjct: 1 MNKSQLIDKIAA-GADISKAAAGRALDAIIASVTDSLKEGDDVALVGFGSFTVRERSART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P K I + VP FRAGK LK+ +N
Sbjct: 60 GRNPQTGKEIKIAAAKVPAFRAGKALKDAVN 90
>gi|83311122|ref|YP_421386.1| nucleoid DNA-binding protein [Magnetospirillum magneticum AMB-1]
gi|82945963|dbj|BAE50827.1| Bacterial nucleoid DNA-binding protein [Magnetospirillum magneticum
AMB-1]
Length = 117
Score = 102 bits (254), Expect = 2e-20, Method: Composition-based stats.
Identities = 31/91 (34%), Positives = 46/91 (50%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K L+ +A+ L+ + +++ +T AL G V + GFGSFSV +RAA+
Sbjct: 27 MNKQDLVNKVAE-LSGLSKAAADNVIDATFAAITSALKAGDDVRLVGFGSFSVTQRAAKE 85
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P I + P F AGK LK+ +N
Sbjct: 86 GRNPRTGATIKIAASKAPKFTAGKGLKDAVN 116
>gi|71066029|ref|YP_264756.1| putative DNA-binding protein HU-beta [Psychrobacter arcticus
273-4]
gi|71039014|gb|AAZ19322.1| putative DNA-binding protein HU-beta [Psychrobacter arcticus
273-4]
Length = 90
Score = 102 bits (254), Expect = 2e-20, Method: Composition-based stats.
Identities = 39/91 (42%), Positives = 55/91 (60%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI +IA+K+ LN +N ++E + +AL G + + GFG+FSV+ R AR
Sbjct: 1 MNKSELIDSIAEKS-GLNKTQAGDALNAVMESVGEALEAGDSISLVGFGTFSVKDRKART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + +S+ P F+AGKNLKERLN
Sbjct: 60 GRNPKTGEELSIPASKAPSFKAGKNLKERLN 90
>gi|119356085|ref|YP_910729.1| histone family protein DNA-binding protein [Chlorobium
phaeobacteroides DSM 266]
gi|119353434|gb|ABL64305.1| histone family protein DNA-binding protein [Chlorobium
phaeobacteroides DSM 266]
Length = 91
Score = 102 bits (254), Expect = 2e-20, Method: Composition-based stats.
Identities = 31/90 (34%), Positives = 48/90 (53%), Gaps = 1/90 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ L+ IA + L D E+ VN + +T++L G V + GFG+F+ +RA R
Sbjct: 1 MSKAELVEKIASQ-AGLTKVDAERAVNAFMNVVTESLKEGEDVTLVGFGTFTTGERAERQ 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P + I++ K V F+ GK LK +
Sbjct: 60 GRNPQNGETITIAAKKVVKFKPGKALKAGV 89
>gi|261210560|ref|ZP_05924853.1| DNA-binding protein HU-beta [Vibrio sp. RC341]
gi|260840345|gb|EEX66916.1| DNA-binding protein HU-beta [Vibrio sp. RC341]
Length = 90
Score = 102 bits (254), Expect = 2e-20, Method: Composition-based stats.
Identities = 35/91 (38%), Positives = 52/91 (57%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ L+ IA N ++ + ++ +E M+ L +G +V + GFG+FSVR RAAR
Sbjct: 1 MNKTQLVEQIAA-NADISKASAGRALDAFIEAMSGTLQSGDQVALVGFGTFSVRTRAART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + I + E VP F+AGK LK+ N
Sbjct: 60 GRNPKTGEEIKIAEAKVPSFKAGKALKDACN 90
>gi|225075202|ref|ZP_03718401.1| hypothetical protein NEIFLAOT_00202 [Neisseria flavescens
NRL30031/H210]
gi|241758896|ref|ZP_04757009.1| integration host factor, beta subunit [Neisseria flavescens
SK114]
gi|261380193|ref|ZP_05984766.1| integration host factor, beta subunit [Neisseria subflava NJ9703]
gi|319638404|ref|ZP_07993166.1| integration host factor subunit beta [Neisseria mucosa C102]
gi|224953377|gb|EEG34586.1| hypothetical protein NEIFLAOT_00202 [Neisseria flavescens
NRL30031/H210]
gi|241321104|gb|EER57317.1| integration host factor, beta subunit [Neisseria flavescens
SK114]
gi|284797040|gb|EFC52387.1| integration host factor, beta subunit [Neisseria subflava NJ9703]
gi|317400153|gb|EFV80812.1| integration host factor subunit beta [Neisseria mucosa C102]
Length = 104
Score = 102 bits (254), Expect = 2e-20, Method: Composition-based stats.
Identities = 43/96 (44%), Positives = 59/96 (61%), Gaps = 5/96 (5%)
Query: 1 MIKSSL----IGTIAKKNPK-LNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRK 55
M KS L A+KN L +DVE V +L++ MT++LA G R+EIRGFGSF +
Sbjct: 1 MTKSELMVRLAEVFAEKNGNQLLAKDVEYSVKVLVDTMTRSLARGQRIEIRGFGSFDLNH 60
Query: 56 RAARLARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R AR+ R P + + V EK VP F+ GK L+ER++
Sbjct: 61 RPARIGRNPKTGERVEVPEKHVPHFKPGKELRERVD 96
>gi|242279078|ref|YP_002991207.1| histone family protein DNA-binding protein [Desulfovibrio
salexigens DSM 2638]
gi|242121972|gb|ACS79668.1| histone family protein DNA-binding protein [Desulfovibrio
salexigens DSM 2638]
Length = 90
Score = 102 bits (254), Expect = 2e-20, Method: Composition-based stats.
Identities = 30/91 (32%), Positives = 49/91 (53%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ L+ IA+K + D E+ +N L+ + + L N G++ + GFG+F V +R R+
Sbjct: 1 MTKAELVVKIAEK-AGMTKADAERCLNYFLDTVEETLVNEGKLTLTGFGTFQVDERKERV 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + I + V FR GK LK+ +
Sbjct: 60 GRNPRTGEEIKIPACKVVKFRPGKLLKDAVK 90
>gi|328543684|ref|YP_004303793.1| Histone-like DNA-binding protein [polymorphum gilvum SL003B-26A1]
gi|326413428|gb|ADZ70491.1| Histone-like DNA-binding protein [Polymorphum gilvum SL003B-26A1]
Length = 91
Score = 102 bits (254), Expect = 2e-20, Method: Composition-based stats.
Identities = 33/91 (36%), Positives = 47/91 (51%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI +A+K L + V+ + +T L G V I GFG+FSV +RAA
Sbjct: 1 MNKNDLIAAVAEKT-GLTKAQAGEAVDATFDAVTATLKAGDEVRIIGFGNFSVSERAATE 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + I + P F+AGK LK+ +N
Sbjct: 60 GRNPRTGETIKIPASKTPKFKAGKGLKDAVN 90
>gi|190573025|ref|YP_001970870.1| putative DNA-binding protein HU-beta [Stenotrophomonas
maltophilia K279a]
gi|190010947|emb|CAQ44556.1| putative DNA-binding protein HU-beta [Stenotrophomonas
maltophilia K279a]
Length = 90
Score = 102 bits (254), Expect = 2e-20, Method: Composition-based stats.
Identities = 33/91 (36%), Positives = 50/91 (54%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI +A+ L + + V+ ++ +T+AL +G V + GFG+F VR RAAR
Sbjct: 1 MNKTELIDAVAEA-ADLTKAESSRAVDAVVAAITKALKDGDAVTLVGFGTFQVRDRAART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P I + P F+AGK LK+ +N
Sbjct: 60 GRNPKTGDTIKIAASKNPSFKAGKALKDAVN 90
>gi|163751872|ref|ZP_02159086.1| DNA-binding protein, HU family [Shewanella benthica KT99]
gi|161328222|gb|EDP99386.1| DNA-binding protein, HU family [Shewanella benthica KT99]
Length = 90
Score = 102 bits (254), Expect = 2e-20, Method: Composition-based stats.
Identities = 31/91 (34%), Positives = 49/91 (53%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI IA ++ + ++ + +T +L NG ++ + GFG+F VR+RA R
Sbjct: 1 MNKSELIEKIAT-GADISKAAAGRALDSFIGAVTDSLKNGDKISLVGFGTFEVRQRAERT 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P I + +P F+AGK LK+ +N
Sbjct: 60 GRNPQTGAEIKIAAANIPAFKAGKALKDAVN 90
>gi|222528663|ref|YP_002572545.1| histone family protein DNA-binding protein [Caldicellulosiruptor
bescii DSM 6725]
gi|222455510|gb|ACM59772.1| histone family protein DNA-binding protein [Caldicellulosiruptor
bescii DSM 6725]
Length = 91
Score = 102 bits (254), Expect = 2e-20, Method: Composition-based stats.
Identities = 38/90 (42%), Positives = 59/90 (65%), Gaps = 1/90 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI +A+K+ L +D EK +N ++ +T+AL+ G +V++ GFGSF VR+RA R+
Sbjct: 1 MNKTELISAMAEKS-GLTKKDAEKALNAFVDAVTEALSKGEKVQLVGFGSFEVRERAERV 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P Q+ I + VP F+AGK LK+ +
Sbjct: 60 GRNPQTQEEIKIPATKVPVFKAGKMLKDAV 89
>gi|30020445|ref|NP_832076.1| DNA-binding protein HU [Bacillus cereus ATCC 14579]
gi|75762127|ref|ZP_00742029.1| DNA-binding protein HU [Bacillus thuringiensis serovar
israelensis ATCC 35646]
gi|206971712|ref|ZP_03232662.1| DNA-binding protein HU [Bacillus cereus AH1134]
gi|218232049|ref|YP_002367059.1| DNA-binding protein HU [Bacillus cereus B4264]
gi|218897327|ref|YP_002445738.1| DNA-binding protein HU [Bacillus cereus G9842]
gi|228900972|ref|ZP_04065185.1| DNA-binding protein HU 1 [Bacillus thuringiensis IBL 4222]
gi|228908124|ref|ZP_04071972.1| DNA-binding protein HU 1 [Bacillus thuringiensis IBL 200]
gi|228921073|ref|ZP_04084408.1| DNA-binding protein HU 1 [Bacillus thuringiensis serovar
huazhongensis BGSC 4BD1]
gi|228939512|ref|ZP_04102100.1| DNA-binding protein HU 1 [Bacillus thuringiensis serovar berliner
ATCC 10792]
gi|228952694|ref|ZP_04114768.1| DNA-binding protein HU 1 [Bacillus thuringiensis serovar kurstaki
str. T03a001]
gi|228958629|ref|ZP_04120347.1| DNA-binding protein HU 1 [Bacillus thuringiensis serovar
pakistani str. T13001]
gi|228965347|ref|ZP_04126439.1| DNA-binding protein HU 1 [Bacillus thuringiensis serovar sotto
str. T04001]
gi|228972365|ref|ZP_04132976.1| DNA-binding protein HU 1 [Bacillus thuringiensis serovar
thuringiensis str. T01001]
gi|228978978|ref|ZP_04139343.1| DNA-binding protein HU 1 [Bacillus thuringiensis Bt407]
gi|229044105|ref|ZP_04191791.1| DNA-binding protein HU 1 [Bacillus cereus AH676]
gi|229069884|ref|ZP_04203166.1| DNA-binding protein HU 1 [Bacillus cereus F65185]
gi|229109797|ref|ZP_04239382.1| DNA-binding protein HU 1 [Bacillus cereus Rock1-15]
gi|229127753|ref|ZP_04256742.1| DNA-binding protein HU 1 [Bacillus cereus BDRD-Cer4]
gi|229144952|ref|ZP_04273348.1| DNA-binding protein HU 1 [Bacillus cereus BDRD-ST24]
gi|229150577|ref|ZP_04278792.1| DNA-binding protein HU 1 [Bacillus cereus m1550]
gi|229178719|ref|ZP_04306083.1| DNA-binding protein HU 1 [Bacillus cereus 172560W]
gi|229190436|ref|ZP_04317436.1| DNA-binding protein HU 1 [Bacillus cereus ATCC 10876]
gi|296502915|ref|YP_003664615.1| DNA-binding protein HU [Bacillus thuringiensis BMB171]
gi|29895996|gb|AAP09277.1| DNA-binding protein HU [Bacillus cereus ATCC 14579]
gi|74490387|gb|EAO53701.1| DNA-binding protein HU [Bacillus thuringiensis serovar
israelensis ATCC 35646]
gi|206733697|gb|EDZ50869.1| DNA-binding protein HU [Bacillus cereus AH1134]
gi|218160006|gb|ACK59998.1| DNA-binding protein HU [Bacillus cereus B4264]
gi|218543334|gb|ACK95728.1| DNA-binding protein HU [Bacillus cereus G9842]
gi|228593049|gb|EEK50868.1| DNA-binding protein HU 1 [Bacillus cereus ATCC 10876]
gi|228604877|gb|EEK62334.1| DNA-binding protein HU 1 [Bacillus cereus 172560W]
gi|228632886|gb|EEK89500.1| DNA-binding protein HU 1 [Bacillus cereus m1550]
gi|228638474|gb|EEK94908.1| DNA-binding protein HU 1 [Bacillus cereus BDRD-ST24]
gi|228655830|gb|EEL11679.1| DNA-binding protein HU 1 [Bacillus cereus BDRD-Cer4]
gi|228673642|gb|EEL28901.1| DNA-binding protein HU 1 [Bacillus cereus Rock1-15]
gi|228713287|gb|EEL65180.1| DNA-binding protein HU 1 [Bacillus cereus F65185]
gi|228725218|gb|EEL76489.1| DNA-binding protein HU 1 [Bacillus cereus AH676]
gi|228780760|gb|EEM28973.1| DNA-binding protein HU 1 [Bacillus thuringiensis Bt407]
gi|228787382|gb|EEM35350.1| DNA-binding protein HU 1 [Bacillus thuringiensis serovar
thuringiensis str. T01001]
gi|228794337|gb|EEM41851.1| DNA-binding protein HU 1 [Bacillus thuringiensis serovar sotto
str. T04001]
gi|228801050|gb|EEM47949.1| DNA-binding protein HU 1 [Bacillus thuringiensis serovar
pakistani str. T13001]
gi|228806970|gb|EEM53515.1| DNA-binding protein HU 1 [Bacillus thuringiensis serovar kurstaki
str. T03a001]
gi|228820212|gb|EEM66249.1| DNA-binding protein HU 1 [Bacillus thuringiensis serovar berliner
ATCC 10792]
gi|228838619|gb|EEM83925.1| DNA-binding protein HU 1 [Bacillus thuringiensis serovar
huazhongensis BGSC 4BD1]
gi|228851542|gb|EEM96348.1| DNA-binding protein HU 1 [Bacillus thuringiensis IBL 200]
gi|228858670|gb|EEN03117.1| DNA-binding protein HU 1 [Bacillus thuringiensis IBL 4222]
gi|296323967|gb|ADH06895.1| DNA-binding protein HU [Bacillus thuringiensis BMB171]
gi|326940059|gb|AEA15955.1| DNA-binding protein HU [Bacillus thuringiensis serovar chinensis
CT-43]
Length = 90
Score = 102 bits (254), Expect = 2e-20, Method: Composition-based stats.
Identities = 32/91 (35%), Positives = 53/91 (58%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI +A ++ ++ +D V + + + AL +G +V++ GFG+F VR+R+AR
Sbjct: 1 MNKTELIKNVA-QSADISQKDASAAVQSVFDTIANALQSGDKVQLIGFGTFEVRERSART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + I + VP F+AGK LKE +
Sbjct: 60 GRNPQTGEEIQIAAGKVPAFKAGKELKEAVK 90
>gi|300703991|ref|YP_003745593.1| DNA-binding protein hu-beta, transcriptional regulator subunit
beta [Ralstonia solanacearum CFBP2957]
gi|299071654|emb|CBJ42978.1| DNA-binding protein HU-beta, transcriptional regulator, beta
subunit [Ralstonia solanacearum CFBP2957]
Length = 90
Score = 101 bits (253), Expect = 2e-20, Method: Composition-based stats.
Identities = 33/91 (36%), Positives = 50/91 (54%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI IA + L D + ++ +L+ + LA+GG V + GFGSFSV R AR+
Sbjct: 1 MNKAVLIAHIADQ-AGLKKTDANRALDAVLDGIRSTLADGGTVSLTGFGSFSVGARPARI 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + + + V F+AG +LK +N
Sbjct: 60 GRNPRTGEEVEIAASHVVKFKAGSDLKAAVN 90
>gi|261401368|ref|ZP_05987493.1| DNA-binding protein HU-beta [Neisseria lactamica ATCC 23970]
gi|313668345|ref|YP_004048629.1| DNA-binding protein [Neisseria lactamica ST-640]
gi|269208663|gb|EEZ75118.1| DNA-binding protein HU-beta [Neisseria lactamica ATCC 23970]
gi|313005807|emb|CBN87261.1| putative DNA-binding protein [Neisseria lactamica 020-06]
Length = 89
Score = 101 bits (253), Expect = 2e-20, Method: Composition-based stats.
Identities = 32/90 (35%), Positives = 48/90 (53%), Gaps = 1/90 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI IA++ ++ +K ++ +T AL G V + GFG+F V +RA R
Sbjct: 1 MNKSELIEAIAQE-AGISKAAAQKALDATTNAVTDALKKGDTVTLVGFGTFYVGERAERQ 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P + +++ P FRAGK LK+ L
Sbjct: 60 GRNPKTGEPLTIAAAKTPKFRAGKALKDAL 89
>gi|16759431|ref|NP_455048.1| transcriptional regulator HU subunit beta [Salmonella enterica
subsp. enterica serovar Typhi str. CT18]
gi|16763832|ref|NP_459447.1| transcriptional regulator HU subunit beta [Salmonella enterica
subsp. enterica serovar Typhimurium str. LT2]
gi|29142797|ref|NP_806139.1| transcriptional regulator HU subunit beta [Salmonella enterica
subsp. enterica serovar Typhi str. Ty2]
gi|56414393|ref|YP_151468.1| transcriptional regulator HU subunit beta [Salmonella enterica
subsp. enterica serovar Paratyphi A str. ATCC 9150]
gi|62179063|ref|YP_215480.1| transcriptional regulator HU subunit beta [Salmonella enterica
subsp. enterica serovar Choleraesuis str. SC-B67]
gi|161504372|ref|YP_001571484.1| transcriptional regulator HU subunit beta [Salmonella enterica
subsp. arizonae serovar 62:z4,z23:-- str. RSK2980]
gi|161615354|ref|YP_001589319.1| transcriptional regulator HU subunit beta [Salmonella enterica
subsp. enterica serovar Paratyphi B str. SPB7]
gi|167551733|ref|ZP_02345486.1| DNA-binding protein HU-beta [Salmonella enterica subsp. enterica
serovar Saintpaul str. SARA29]
gi|167990435|ref|ZP_02571535.1| DNA-binding protein HU-beta [Salmonella enterica subsp. enterica
serovar 4,[5],12:i:- str. CVM23701]
gi|168231440|ref|ZP_02656498.1| DNA-binding protein HU-beta [Salmonella enterica subsp. enterica
serovar Kentucky str. CDC 191]
gi|168237566|ref|ZP_02662624.1| DNA-binding protein HU-beta [Salmonella enterica subsp. enterica
serovar Schwarzengrund str. SL480]
gi|168240280|ref|ZP_02665212.1| DNA-binding protein HU-beta [Salmonella enterica subsp. enterica
serovar Heidelberg str. SL486]
gi|168261112|ref|ZP_02683085.1| DNA-binding protein HU-beta [Salmonella enterica subsp. enterica
serovar Hadar str. RI_05P066]
gi|168465545|ref|ZP_02699427.1| DNA-binding protein HU-beta [Salmonella enterica subsp. enterica
serovar Newport str. SL317]
gi|168818937|ref|ZP_02830937.1| DNA-binding protein HU-beta [Salmonella enterica subsp. enterica
serovar Weltevreden str. HI_N05-537]
gi|194446645|ref|YP_002039694.1| transcriptional regulator HU subunit beta [Salmonella enterica
subsp. enterica serovar Newport str. SL254]
gi|194449059|ref|YP_002044486.1| transcriptional regulator HU subunit beta [Salmonella enterica
subsp. enterica serovar Heidelberg str. SL476]
gi|194469706|ref|ZP_03075690.1| DNA-binding protein HU-beta [Salmonella enterica subsp. enterica
serovar Kentucky str. CVM29188]
gi|194735846|ref|YP_002113482.1| transcriptional regulator HU subunit beta [Salmonella enterica
subsp. enterica serovar Schwarzengrund str. CVM19633]
gi|197249293|ref|YP_002145432.1| transcriptional regulator HU subunit beta [Salmonella enterica
subsp. enterica serovar Agona str. SL483]
gi|197265364|ref|ZP_03165438.1| DNA-binding protein HU-beta [Salmonella enterica subsp. enterica
serovar Saintpaul str. SARA23]
gi|197363313|ref|YP_002142950.1| transcriptional regulator HU subunit beta [Salmonella enterica
subsp. enterica serovar Paratyphi A str. AKU_12601]
gi|198246187|ref|YP_002214405.1| transcriptional regulator HU subunit beta [Salmonella enterica
subsp. enterica serovar Dublin str. CT_02021853]
gi|200390435|ref|ZP_03217046.1| DNA-binding protein HU-beta [Salmonella enterica subsp. enterica
serovar Virchow str. SL491]
gi|204930591|ref|ZP_03221521.1| DNA-binding protein HU-beta [Salmonella enterica subsp. enterica
serovar Javiana str. GA_MM04042433]
gi|205351762|ref|YP_002225563.1| transcriptional regulator HU subunit beta [Salmonella enterica
subsp. enterica serovar Gallinarum str. 287/91]
gi|207855931|ref|YP_002242582.1| transcriptional regulator HU subunit beta [Salmonella enterica
subsp. enterica serovar Enteritidis str. P125109]
gi|213160791|ref|ZP_03346501.1| transcriptional regulator HU subunit beta [Salmonella enterica
subsp. enterica serovar Typhi str. E00-7866]
gi|213419827|ref|ZP_03352893.1| transcriptional regulator HU subunit beta [Salmonella enterica
subsp. enterica serovar Typhi str. E01-6750]
gi|213425853|ref|ZP_03358603.1| transcriptional regulator HU subunit beta [Salmonella enterica
subsp. enterica serovar Typhi str. E02-1180]
gi|213582252|ref|ZP_03364078.1| transcriptional regulator HU subunit beta [Salmonella enterica
subsp. enterica serovar Typhi str. E98-0664]
gi|213622866|ref|ZP_03375649.1| transcriptional regulator HU subunit beta [Salmonella enterica
subsp. enterica serovar Typhi str. E98-2068]
gi|213646002|ref|ZP_03376055.1| transcriptional regulator HU subunit beta [Salmonella enterica
subsp. enterica serovar Typhi str. J185]
gi|213850135|ref|ZP_03381033.1| transcriptional regulator HU subunit beta [Salmonella enterica
subsp. enterica serovar Typhi str. M223]
gi|224582289|ref|YP_002636087.1| transcriptional regulator HU subunit beta [Salmonella enterica
subsp. enterica serovar Paratyphi C strain RKS4594]
gi|238911418|ref|ZP_04655255.1| transcriptional regulator HU subunit beta [Salmonella enterica
subsp. enterica serovar Tennessee str. CDC07-0191]
gi|289811835|ref|ZP_06542464.1| transcriptional regulator HU subunit beta [Salmonella enterica
subsp. enterica serovar Typhi str. AG3]
gi|60392171|sp|P0A1R8|DBHB_SALTY RecName: Full=DNA-binding protein HU-beta; AltName: Full=HU-1;
AltName: Full=NS1
gi|60392172|sp|P0A1R9|DBHB_SALTI RecName: Full=DNA-binding protein HU-beta; AltName: Full=HU-1;
AltName: Full=NS1
gi|25294358|pir||AF0558 DNA-binding protein HU-beta [imported] - Salmonella enterica
subsp. enterica serovar Typhi (strain CT18)
gi|581767|emb|CAA30692.1| unnamed protein product [Salmonella enterica subsp. enterica
serovar Typhimurium]
gi|16418958|gb|AAL19406.1| DNA-binding protein HU-beta, NS1 (HU-1) [Salmonella enterica
subsp. enterica serovar Typhimurium str. LT2]
gi|16501722|emb|CAD08910.1| DNA-binding protein HU-beta [Salmonella enterica subsp. enterica
serovar Typhi]
gi|29138429|gb|AAO69999.1| DNA-binding protein HU-beta [Salmonella enterica subsp. enterica
serovar Typhi str. Ty2]
gi|56128650|gb|AAV78156.1| DNA-binding protein HU-beta [Salmonella enterica subsp. enterica
serovar Paratyphi A str. ATCC 9150]
gi|62126696|gb|AAX64399.1| DNA-binding protein HU-beta, NS1 (HU-1) [Salmonella enterica
subsp. enterica serovar Choleraesuis str. SC-B67]
gi|160865719|gb|ABX22342.1| hypothetical protein SARI_02483 [Salmonella enterica subsp.
arizonae serovar 62:z4,z23:--]
gi|161364718|gb|ABX68486.1| hypothetical protein SPAB_03125 [Salmonella enterica subsp.
enterica serovar Paratyphi B str. SPB7]
gi|194405308|gb|ACF65530.1| DNA-binding protein HU-beta [Salmonella enterica subsp. enterica
serovar Newport str. SL254]
gi|194407363|gb|ACF67582.1| DNA-binding protein HU-beta [Salmonella enterica subsp. enterica
serovar Heidelberg str. SL476]
gi|194456070|gb|EDX44909.1| DNA-binding protein HU-beta [Salmonella enterica subsp. enterica
serovar Kentucky str. CVM29188]
gi|194711348|gb|ACF90569.1| DNA-binding protein HU-beta [Salmonella enterica subsp. enterica
serovar Schwarzengrund str. CVM19633]
gi|195631882|gb|EDX50402.1| DNA-binding protein HU-beta [Salmonella enterica subsp. enterica
serovar Newport str. SL317]
gi|197094790|emb|CAR60323.1| DNA-binding protein HU-beta [Salmonella enterica subsp. enterica
serovar Paratyphi A str. AKU_12601]
gi|197212996|gb|ACH50393.1| DNA-binding protein HU-beta [Salmonella enterica subsp. enterica
serovar Agona str. SL483]
gi|197243619|gb|EDY26239.1| DNA-binding protein HU-beta [Salmonella enterica subsp. enterica
serovar Saintpaul str. SARA23]
gi|197289548|gb|EDY28911.1| DNA-binding protein HU-beta [Salmonella enterica subsp. enterica
serovar Schwarzengrund str. SL480]
gi|197940703|gb|ACH78036.1| DNA-binding protein HU-beta [Salmonella enterica subsp. enterica
serovar Dublin str. CT_02021853]
gi|199602880|gb|EDZ01426.1| DNA-binding protein HU-beta [Salmonella enterica subsp. enterica
serovar Virchow str. SL491]
gi|204320525|gb|EDZ05728.1| DNA-binding protein HU-beta [Salmonella enterica subsp. enterica
serovar Javiana str. GA_MM04042433]
gi|205271543|emb|CAR36361.1| DNA-binding protein HU-beta [Salmonella enterica subsp. enterica
serovar Gallinarum str. 287/91]
gi|205323417|gb|EDZ11256.1| DNA-binding protein HU-beta [Salmonella enterica subsp. enterica
serovar Saintpaul str. SARA29]
gi|205330927|gb|EDZ17691.1| DNA-binding protein HU-beta [Salmonella enterica subsp. enterica
serovar 4,[5],12:i:- str. CVM23701]
gi|205333955|gb|EDZ20719.1| DNA-binding protein HU-beta [Salmonella enterica subsp. enterica
serovar Kentucky str. CDC 191]
gi|205339741|gb|EDZ26505.1| DNA-binding protein HU-beta [Salmonella enterica subsp. enterica
serovar Heidelberg str. SL486]
gi|205344199|gb|EDZ30963.1| DNA-binding protein HU-beta [Salmonella enterica subsp. enterica
serovar Weltevreden str. HI_N05-537]
gi|205350073|gb|EDZ36704.1| DNA-binding protein HU-beta [Salmonella enterica subsp. enterica
serovar Hadar str. RI_05P066]
gi|206707734|emb|CAR32019.1| DNA-binding protein HU-beta [Salmonella enterica subsp. enterica
serovar Enteritidis str. P125109]
gi|224466816|gb|ACN44646.1| DNA-binding protein HU-beta [Salmonella enterica subsp. enterica
serovar Paratyphi C strain RKS4594]
gi|261245734|emb|CBG23531.1| DNA-binding protein Hu-beta [Salmonella enterica subsp. enterica
serovar Typhimurium str. D23580]
gi|267992167|gb|ACY87052.1| transcriptional regulator HU subunit beta [Salmonella enterica
subsp. enterica serovar Typhimurium str. 14028S]
gi|301157062|emb|CBW16546.1| DNA-binding protein HU-beta [Salmonella enterica subsp. enterica
serovar Typhimurium str. SL1344]
gi|312911484|dbj|BAJ35458.1| transcriptional regulator HU subunit beta [Salmonella enterica
subsp. enterica serovar Typhimurium str. T000240]
gi|320084725|emb|CBY94516.1| Integration host factor subunit beta IHF-beta [Salmonella
enterica subsp. enterica serovar Weltevreden str.
2007-60-3289-1]
gi|321226029|gb|EFX51080.1| DNA-binding protein HU-beta [Salmonella enterica subsp. enterica
serovar Typhimurium str. TN061786]
gi|322614729|gb|EFY11658.1| transcriptional regulator HU subunit beta [Salmonella enterica
subsp. enterica serovar Montevideo str. 315996572]
gi|322618835|gb|EFY15723.1| transcriptional regulator HU subunit beta [Salmonella enterica
subsp. enterica serovar Montevideo str. 495297-1]
gi|322623542|gb|EFY20381.1| transcriptional regulator HU subunit beta [Salmonella enterica
subsp. enterica serovar Montevideo str. 495297-3]
gi|322629159|gb|EFY25938.1| transcriptional regulator HU subunit beta [Salmonella enterica
subsp. enterica serovar Montevideo str. 495297-4]
gi|322631880|gb|EFY28634.1| transcriptional regulator HU subunit beta [Salmonella enterica
subsp. enterica serovar Montevideo str. 515920-1]
gi|322637383|gb|EFY34085.1| transcriptional regulator HU subunit beta [Salmonella enterica
subsp. enterica serovar Montevideo str. 515920-2]
gi|322642068|gb|EFY38678.1| transcriptional regulator HU subunit beta [Salmonella enterica
subsp. enterica serovar Montevideo str. 531954]
gi|322647887|gb|EFY44362.1| transcriptional regulator HU subunit beta [Salmonella enterica
subsp. enterica serovar Montevideo str.
NC_MB110209-0054]
gi|322652565|gb|EFY48919.1| transcriptional regulator HU subunit beta [Salmonella enterica
subsp. enterica serovar Montevideo str. OH_2009072675]
gi|322653273|gb|EFY49606.1| transcriptional regulator HU subunit beta [Salmonella enterica
subsp. enterica serovar Montevideo str.
CASC_09SCPH15965]
gi|322660578|gb|EFY56814.1| transcriptional regulator HU subunit beta [Salmonella enterica
subsp. enterica serovar Montevideo str. 19N]
gi|322664730|gb|EFY60923.1| transcriptional regulator HU subunit beta [Salmonella enterica
subsp. enterica serovar Montevideo str. 81038-01]
gi|322669217|gb|EFY65367.1| transcriptional regulator HU subunit beta [Salmonella enterica
subsp. enterica serovar Montevideo str. MD_MDA09249507]
gi|322670762|gb|EFY66895.1| transcriptional regulator HU subunit beta [Salmonella enterica
subsp. enterica serovar Montevideo str. 414877]
gi|322678999|gb|EFY75054.1| transcriptional regulator HU subunit beta [Salmonella enterica
subsp. enterica serovar Montevideo str. 366867]
gi|322682028|gb|EFY78053.1| transcriptional regulator HU subunit beta [Salmonella enterica
subsp. enterica serovar Montevideo str. 413180]
gi|322685143|gb|EFY81140.1| transcriptional regulator HU subunit beta [Salmonella enterica
subsp. enterica serovar Montevideo str. 446600]
gi|322713524|gb|EFZ05095.1| transcriptional regulator HU subunit beta [Salmonella enterica
subsp. enterica serovar Choleraesuis str. A50]
gi|323128771|gb|ADX16201.1| transcriptional regulator HU subunit beta [Salmonella enterica
subsp. enterica serovar Typhimurium str. 4/74]
gi|323192963|gb|EFZ78186.1| transcriptional regulator HU subunit beta [Salmonella enterica
subsp. enterica serovar Montevideo str. 609458-1]
gi|323196955|gb|EFZ82097.1| transcriptional regulator HU subunit beta [Salmonella enterica
subsp. enterica serovar Montevideo str. 556150-1]
gi|323203940|gb|EFZ88957.1| transcriptional regulator HU subunit beta [Salmonella enterica
subsp. enterica serovar Montevideo str. 609460]
gi|323206975|gb|EFZ91928.1| transcriptional regulator HU subunit beta [Salmonella enterica
subsp. enterica serovar Montevideo str. 507440-20]
gi|323214178|gb|EFZ98936.1| transcriptional regulator HU subunit beta [Salmonella enterica
subsp. enterica serovar Montevideo str. 556152]
gi|323214498|gb|EFZ99249.1| transcriptional regulator HU subunit beta [Salmonella enterica
subsp. enterica serovar Montevideo str. MB101509-0077]
gi|323219160|gb|EGA03657.1| transcriptional regulator HU subunit beta [Salmonella enterica
subsp. enterica serovar Montevideo str. MB102109-0047]
gi|323227004|gb|EGA11185.1| transcriptional regulator HU subunit beta [Salmonella enterica
subsp. enterica serovar Montevideo str. MB110209-0055]
gi|323230178|gb|EGA14298.1| transcriptional regulator HU subunit beta [Salmonella enterica
subsp. enterica serovar Montevideo str. MB111609-0052]
gi|323233916|gb|EGA18005.1| transcriptional regulator HU subunit beta [Salmonella enterica
subsp. enterica serovar Montevideo str. 2009083312]
gi|323238390|gb|EGA22448.1| transcriptional regulator HU subunit beta [Salmonella enterica
subsp. enterica serovar Montevideo str. 2009085258]
gi|323244077|gb|EGA28086.1| transcriptional regulator HU subunit beta [Salmonella enterica
subsp. enterica serovar Montevideo str. 315731156]
gi|323246238|gb|EGA30221.1| transcriptional regulator HU subunit beta [Salmonella enterica
subsp. enterica serovar Montevideo str. IA_2009159199]
gi|323251864|gb|EGA35727.1| transcriptional regulator HU subunit beta [Salmonella enterica
subsp. enterica serovar Montevideo str. IA_2010008282]
gi|323257860|gb|EGA41539.1| transcriptional regulator HU subunit beta [Salmonella enterica
subsp. enterica serovar Montevideo str. IA_2010008283]
gi|323261126|gb|EGA44718.1| transcriptional regulator HU subunit beta [Salmonella enterica
subsp. enterica serovar Montevideo str. IA_2010008284]
gi|323264944|gb|EGA48443.1| transcriptional regulator HU subunit beta [Salmonella enterica
subsp. enterica serovar Montevideo str. IA_2010008285]
gi|323272507|gb|EGA55914.1| transcriptional regulator HU subunit beta [Salmonella enterica
subsp. enterica serovar Montevideo str. IA_2010008287]
gi|326622154|gb|EGE28499.1| transcriptional regulator HU subunit beta [Salmonella enterica
subsp. enterica serovar Dublin str. 3246]
gi|326626797|gb|EGE33140.1| transcriptional regulator HU subunit beta [Salmonella enterica
subsp. enterica serovar Gallinarum str. 9]
gi|332987400|gb|AEF06383.1| transcriptional regulator HU subunit beta [Salmonella enterica
subsp. enterica serovar Typhimurium str. UK-1]
gi|226110|prf||1410323A histone-like protein
Length = 90
Score = 101 bits (253), Expect = 2e-20, Method: Composition-based stats.
Identities = 34/91 (37%), Positives = 53/91 (58%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI IA ++ + ++ ++ +T++L G V + GFG+F+V++RAAR
Sbjct: 1 MNKSQLIEKIAA-GADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P K I++ VP FRAGK LK+ +N
Sbjct: 60 GRNPQTGKEITIAAAKVPSFRAGKALKDAVN 90
>gi|163940149|ref|YP_001645033.1| histone family protein DNA-binding protein [Bacillus
weihenstephanensis KBAB4]
gi|229011627|ref|ZP_04168810.1| DNA-binding protein HU 1 [Bacillus mycoides DSM 2048]
gi|229060025|ref|ZP_04197396.1| DNA-binding protein HU 1 [Bacillus cereus AH603]
gi|229133208|ref|ZP_04262040.1| DNA-binding protein HU 1 [Bacillus cereus BDRD-ST196]
gi|229167194|ref|ZP_04294935.1| DNA-binding protein HU 1 [Bacillus cereus AH621]
gi|163862346|gb|ABY43405.1| histone family protein DNA-binding protein [Bacillus
weihenstephanensis KBAB4]
gi|228616232|gb|EEK73316.1| DNA-binding protein HU 1 [Bacillus cereus AH621]
gi|228650227|gb|EEL06230.1| DNA-binding protein HU 1 [Bacillus cereus BDRD-ST196]
gi|228719244|gb|EEL70852.1| DNA-binding protein HU 1 [Bacillus cereus AH603]
gi|228749585|gb|EEL99427.1| DNA-binding protein HU 1 [Bacillus mycoides DSM 2048]
Length = 90
Score = 101 bits (253), Expect = 3e-20, Method: Composition-based stats.
Identities = 31/91 (34%), Positives = 53/91 (58%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ L+ +A ++ ++ +D V + + + AL +G +V++ GFG+F VR+R+AR
Sbjct: 1 MNKTELVKNVA-QSADISQKDASAAVQSVFDTIANALQSGDKVQLIGFGTFEVRERSART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + I + VP F+AGK LKE +
Sbjct: 60 GRNPQTGEEIQIAAGKVPAFKAGKELKEAVK 90
>gi|227358099|ref|ZP_03842441.1| DNA-binding protein HU-beta [Proteus mirabilis ATCC 29906]
gi|227161834|gb|EEI46866.1| DNA-binding protein HU-beta [Proteus mirabilis ATCC 29906]
Length = 96
Score = 101 bits (253), Expect = 3e-20, Method: Composition-based stats.
Identities = 35/91 (38%), Positives = 51/91 (56%), Gaps = 1/91 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ LI IA N + ++V+ ++ +T++L G V + GFG+F+VR RAAR
Sbjct: 7 NKTQLIDKIAA-NADITKAAAGRVVDAMVASITESLQKGDDVALVGFGTFTVRDRAARTG 65
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P K I + VP FRAGK LK+ +N
Sbjct: 66 RNPQTGKEIQIAAAKVPAFRAGKGLKDAVNQ 96
>gi|78485524|ref|YP_391449.1| histone-like DNA-binding protein [Thiomicrospira crunogena XCL-2]
gi|78363810|gb|ABB41775.1| histone-like DNA-binding protein [Thiomicrospira crunogena XCL-2]
Length = 90
Score = 101 bits (253), Expect = 3e-20, Method: Composition-based stats.
Identities = 34/91 (37%), Positives = 50/91 (54%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ L+ IA++ L D K + + +T+AL++G V I GFG+F V +R+AR
Sbjct: 1 MNKTELVSAIAEE-AGLTKADAAKALEATVSTVTKALSSGDSVAIIGFGTFKVGERSART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + + VP F AGK LKE +N
Sbjct: 60 GRNPQTGAEMQIPAAKVPKFSAGKALKEAVN 90
>gi|157374683|ref|YP_001473283.1| histone family protein DNA-binding protein [Shewanella sediminis
HAW-EB3]
gi|157317057|gb|ABV36155.1| histone family protein DNA-binding protein [Shewanella sediminis
HAW-EB3]
Length = 90
Score = 101 bits (253), Expect = 3e-20, Method: Composition-based stats.
Identities = 31/91 (34%), Positives = 48/91 (52%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI IA ++ + ++ + +T L G ++ + GFG+F VR+RA R
Sbjct: 1 MNKSELIEKIA-SGADISKAAAGRALDSFIGAVTDGLKEGDKISLVGFGTFEVRQRAERT 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P K I + +P F+AGK LK+ +N
Sbjct: 60 GRNPQTGKEIKIAAANIPAFKAGKALKDAVN 90
>gi|268601568|ref|ZP_06135735.1| integration host factor beta-subunit [Neisseria gonorrhoeae
PID18]
gi|291043583|ref|ZP_06569299.1| integration host factor subunit beta [Neisseria gonorrhoeae DGI2]
gi|268585699|gb|EEZ50375.1| integration host factor beta-subunit [Neisseria gonorrhoeae
PID18]
gi|291012046|gb|EFE04035.1| integration host factor subunit beta [Neisseria gonorrhoeae DGI2]
Length = 98
Score = 101 bits (253), Expect = 3e-20, Method: Composition-based stats.
Identities = 41/96 (42%), Positives = 59/96 (61%), Gaps = 5/96 (5%)
Query: 1 MIKSSLIGTIAK-----KNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRK 55
M KS L+ +A+ L +DVE V +L++ MT++LA G R+EIRGFGSF +
Sbjct: 1 MTKSELMVRLAEVFAAKNGTHLLAKDVEYSVKVLVDTMTRSLARGQRIEIRGFGSFDLNH 60
Query: 56 RAARLARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R AR+ R P + + V EK VP F+ GK L+ER++
Sbjct: 61 RPARIGRNPKTGERVEVPEKHVPHFKPGKELRERVD 96
>gi|312796427|ref|YP_004029349.1| DNA-binding protein HU [Burkholderia rhizoxinica HKI 454]
gi|312168202|emb|CBW75205.1| DNA-binding protein HU [Burkholderia rhizoxinica HKI 454]
Length = 90
Score = 101 bits (253), Expect = 3e-20, Method: Composition-based stats.
Identities = 33/91 (36%), Positives = 51/91 (56%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI IA++ ++ + ++ L++ + + L GG V + GFG+F++ R AR
Sbjct: 1 MNKTELIDHIAEQ-ADISKAAAGRALDALIDGVKETLKKGGSVTLVGFGTFALGTRTART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P I +E VP FRAGK LK+ LN
Sbjct: 60 GRNPRTGAAIKIEAAKVPKFRAGKALKDALN 90
>gi|307822661|ref|ZP_07652892.1| histone family protein DNA-binding protein [Methylobacter
tundripaludum SV96]
gi|307736265|gb|EFO07111.1| histone family protein DNA-binding protein [Methylobacter
tundripaludum SV96]
Length = 90
Score = 101 bits (253), Expect = 3e-20, Method: Composition-based stats.
Identities = 32/91 (35%), Positives = 57/91 (62%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI IA+ + +L D + ++ + +T+AL++G V + GFG+++V++RA R
Sbjct: 1 MNKSELIDAIAE-SAELTKADAGRALDGFIGAVTKALSSGDSVALVGFGTYAVKERAERK 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P I+++ +P F+AGK+LK+ +N
Sbjct: 60 GRNPQTGAEITIKAAKIPSFKAGKSLKDAVN 90
>gi|30262382|ref|NP_844759.1| DNA-binding protein HU [Bacillus anthracis str. Ames]
gi|42781470|ref|NP_978717.1| DNA-binding protein HU [Bacillus cereus ATCC 10987]
gi|47527672|ref|YP_019021.1| DNA-binding protein HU [Bacillus anthracis str. 'Ames Ancestor']
gi|47565733|ref|ZP_00236773.1| DNA-binding protein HU [Bacillus cereus G9241]
gi|49185222|ref|YP_028474.1| DNA-binding protein HU [Bacillus anthracis str. Sterne]
gi|49479951|ref|YP_036479.1| DNA-binding protein HU [Bacillus thuringiensis serovar konkukian
str. 97-27]
gi|52143101|ref|YP_083727.1| DNA-binding protein HU [Bacillus cereus E33L]
gi|65319674|ref|ZP_00392633.1| COG0776: Bacterial nucleoid DNA-binding protein [Bacillus
anthracis str. A2012]
gi|118477778|ref|YP_894929.1| HU family DNA-binding protein [Bacillus thuringiensis str. Al
Hakam]
gi|165870548|ref|ZP_02215202.1| DNA-binding protein HU [Bacillus anthracis str. A0488]
gi|167633079|ref|ZP_02391405.1| DNA-binding protein HU [Bacillus anthracis str. A0442]
gi|167639624|ref|ZP_02397894.1| DNA-binding protein HU [Bacillus anthracis str. A0193]
gi|170686924|ref|ZP_02878143.1| DNA-binding protein HU [Bacillus anthracis str. A0465]
gi|170706668|ref|ZP_02897127.1| DNA-binding protein HU [Bacillus anthracis str. A0389]
gi|177649761|ref|ZP_02932763.1| DNA-binding protein HU [Bacillus anthracis str. A0174]
gi|190565679|ref|ZP_03018599.1| DNA-binding protein HU [Bacillus anthracis Tsiankovskii-I]
gi|196034013|ref|ZP_03101424.1| DNA-binding protein HU [Bacillus cereus W]
gi|196039953|ref|ZP_03107256.1| DNA-binding protein HU [Bacillus cereus NVH0597-99]
gi|196043718|ref|ZP_03110956.1| DNA-binding protein HU [Bacillus cereus 03BB108]
gi|206973759|ref|ZP_03234677.1| DNA-binding protein HU [Bacillus cereus H3081.97]
gi|217959874|ref|YP_002338430.1| DNA-binding protein HU [Bacillus cereus AH187]
gi|218903511|ref|YP_002451345.1| DNA-binding protein HU [Bacillus cereus AH820]
gi|222095963|ref|YP_002530020.1| DNA-binding protein hu [Bacillus cereus Q1]
gi|225864340|ref|YP_002749718.1| DNA-binding protein HU [Bacillus cereus 03BB102]
gi|227814812|ref|YP_002814821.1| DNA-binding protein HU [Bacillus anthracis str. CDC 684]
gi|228914965|ref|ZP_04078570.1| DNA-binding protein HU 1 [Bacillus thuringiensis serovar
pulsiensis BGSC 4CC1]
gi|228927433|ref|ZP_04090489.1| DNA-binding protein HU 1 [Bacillus thuringiensis serovar
pondicheriensis BGSC 4BA1]
gi|228933667|ref|ZP_04096515.1| DNA-binding protein HU 1 [Bacillus thuringiensis serovar
andalousiensis BGSC 4AW1]
gi|228945981|ref|ZP_04108323.1| DNA-binding protein HU 1 [Bacillus thuringiensis serovar
monterrey BGSC 4AJ1]
gi|228985463|ref|ZP_04145620.1| DNA-binding protein HU 1 [Bacillus thuringiensis serovar
tochigiensis BGSC 4Y1]
gi|229030079|ref|ZP_04186143.1| DNA-binding protein HU 1 [Bacillus cereus AH1271]
gi|229091352|ref|ZP_04222567.1| DNA-binding protein HU 1 [Bacillus cereus Rock3-42]
gi|229121924|ref|ZP_04251143.1| DNA-binding protein HU 1 [Bacillus cereus 95/8201]
gi|229139067|ref|ZP_04267644.1| DNA-binding protein HU 1 [Bacillus cereus BDRD-ST26]
gi|229155954|ref|ZP_04284055.1| DNA-binding protein HU 1 [Bacillus cereus ATCC 4342]
gi|229184586|ref|ZP_04311788.1| DNA-binding protein HU 1 [Bacillus cereus BGSC 6E1]
gi|229196589|ref|ZP_04323333.1| DNA-binding protein HU 1 [Bacillus cereus m1293]
gi|229602245|ref|YP_002866714.1| DNA-binding protein HU [Bacillus anthracis str. A0248]
gi|254684954|ref|ZP_05148814.1| DNA-binding protein HU [Bacillus anthracis str. CNEVA-9066]
gi|254722361|ref|ZP_05184149.1| DNA-binding protein HU [Bacillus anthracis str. A1055]
gi|254737402|ref|ZP_05195106.1| DNA-binding protein HU [Bacillus anthracis str. Western North
America USA6153]
gi|254743414|ref|ZP_05201099.1| DNA-binding protein HU [Bacillus anthracis str. Kruger B]
gi|254751717|ref|ZP_05203754.1| DNA-binding protein HU [Bacillus anthracis str. Vollum]
gi|254760236|ref|ZP_05212260.1| DNA-binding protein HU [Bacillus anthracis str. Australia 94]
gi|301053896|ref|YP_003792107.1| DNA-binding protein HU [Bacillus anthracis CI]
gi|30257013|gb|AAP26245.1| DNA-binding protein HU [Bacillus anthracis str. Ames]
gi|42737392|gb|AAS41325.1| DNA-binding protein HU [Bacillus cereus ATCC 10987]
gi|47502820|gb|AAT31496.1| DNA-binding protein HU [Bacillus anthracis str. 'Ames Ancestor']
gi|47557369|gb|EAL15697.1| DNA-binding protein HU [Bacillus cereus G9241]
gi|49179149|gb|AAT54525.1| DNA-binding protein HU [Bacillus anthracis str. Sterne]
gi|49331507|gb|AAT62153.1| DNA-binding protein HU [Bacillus thuringiensis serovar konkukian
str. 97-27]
gi|51976570|gb|AAU18120.1| DNA-binding protein HU [Bacillus cereus E33L]
gi|118417003|gb|ABK85422.1| HU family DNA-binding protein [Bacillus thuringiensis str. Al
Hakam]
gi|164713703|gb|EDR19226.1| DNA-binding protein HU [Bacillus anthracis str. A0488]
gi|167512333|gb|EDR87709.1| DNA-binding protein HU [Bacillus anthracis str. A0193]
gi|167531891|gb|EDR94556.1| DNA-binding protein HU [Bacillus anthracis str. A0442]
gi|170128399|gb|EDS97267.1| DNA-binding protein HU [Bacillus anthracis str. A0389]
gi|170668975|gb|EDT19719.1| DNA-binding protein HU [Bacillus anthracis str. A0465]
gi|172084835|gb|EDT69893.1| DNA-binding protein HU [Bacillus anthracis str. A0174]
gi|190563706|gb|EDV17671.1| DNA-binding protein HU [Bacillus anthracis Tsiankovskii-I]
gi|195993693|gb|EDX57650.1| DNA-binding protein HU [Bacillus cereus W]
gi|196026027|gb|EDX64696.1| DNA-binding protein HU [Bacillus cereus 03BB108]
gi|196029212|gb|EDX67816.1| DNA-binding protein HU [Bacillus cereus NVH0597-99]
gi|206747915|gb|EDZ59304.1| DNA-binding protein HU [Bacillus cereus H3081.97]
gi|217067193|gb|ACJ81443.1| DNA-binding protein HU [Bacillus cereus AH187]
gi|218535688|gb|ACK88086.1| DNA-binding protein HU [Bacillus cereus AH820]
gi|221240021|gb|ACM12731.1| DNA-binding protein HU [Bacillus cereus Q1]
gi|225788591|gb|ACO28808.1| DNA-binding protein HU [Bacillus cereus 03BB102]
gi|227004414|gb|ACP14157.1| DNA-binding protein HU [Bacillus anthracis str. CDC 684]
gi|228586945|gb|EEK45019.1| DNA-binding protein HU 1 [Bacillus cereus m1293]
gi|228598903|gb|EEK56521.1| DNA-binding protein HU 1 [Bacillus cereus BGSC 6E1]
gi|228627561|gb|EEK84287.1| DNA-binding protein HU 1 [Bacillus cereus ATCC 4342]
gi|228644422|gb|EEL00677.1| DNA-binding protein HU 1 [Bacillus cereus BDRD-ST26]
gi|228661573|gb|EEL17194.1| DNA-binding protein HU 1 [Bacillus cereus 95/8201]
gi|228691981|gb|EEL45723.1| DNA-binding protein HU 1 [Bacillus cereus Rock3-42]
gi|228731249|gb|EEL82167.1| DNA-binding protein HU 1 [Bacillus cereus AH1271]
gi|228774228|gb|EEM22637.1| DNA-binding protein HU 1 [Bacillus thuringiensis serovar
tochigiensis BGSC 4Y1]
gi|228813729|gb|EEM60008.1| DNA-binding protein HU 1 [Bacillus thuringiensis serovar
monterrey BGSC 4AJ1]
gi|228825994|gb|EEM71779.1| DNA-binding protein HU 1 [Bacillus thuringiensis serovar
andalousiensis BGSC 4AW1]
gi|228832226|gb|EEM77807.1| DNA-binding protein HU 1 [Bacillus thuringiensis serovar
pondicheriensis BGSC 4BA1]
gi|228844761|gb|EEM89807.1| DNA-binding protein HU 1 [Bacillus thuringiensis serovar
pulsiensis BGSC 4CC1]
gi|229266653|gb|ACQ48290.1| DNA-binding protein HU [Bacillus anthracis str. A0248]
gi|300376065|gb|ADK04969.1| DNA-binding protein HU [Bacillus cereus biovar anthracis str. CI]
gi|324326392|gb|ADY21652.1| DNA-binding protein HU [Bacillus thuringiensis serovar finitimus
YBT-020]
Length = 90
Score = 101 bits (253), Expect = 3e-20, Method: Composition-based stats.
Identities = 32/91 (35%), Positives = 53/91 (58%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI +A ++ ++ +D V + + + AL +G +V++ GFG+F VR+R+AR
Sbjct: 1 MNKTELIKNVA-QSADISQKDASAAVQSVFDTIATALQSGDKVQLIGFGTFEVRERSART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + I + VP F+AGK LKE +
Sbjct: 60 GRNPQTGEEIQIAAGKVPAFKAGKELKEAVK 90
>gi|24373363|ref|NP_717406.1| HU family DNA-binding protein [Shewanella oneidensis MR-1]
gi|113970827|ref|YP_734620.1| histone family protein DNA-binding protein [Shewanella sp. MR-4]
gi|114048052|ref|YP_738602.1| histone family protein DNA-binding protein [Shewanella sp. MR-7]
gi|120599411|ref|YP_963985.1| histone family protein DNA-binding protein [Shewanella sp.
W3-18-1]
gi|126173841|ref|YP_001049990.1| histone family protein DNA-binding protein [Shewanella baltica
OS155]
gi|146292593|ref|YP_001183017.1| histone family protein DNA-binding protein [Shewanella
putrefaciens CN-32]
gi|153000125|ref|YP_001365806.1| histone family protein DNA-binding protein [Shewanella baltica
OS185]
gi|160874747|ref|YP_001554063.1| histone family protein DNA-binding protein [Shewanella baltica
OS195]
gi|217973907|ref|YP_002358658.1| histone family protein DNA-binding protein [Shewanella baltica
OS223]
gi|304409714|ref|ZP_07391334.1| histone family protein DNA-binding protein [Shewanella baltica
OS183]
gi|307304070|ref|ZP_07583823.1| histone family protein DNA-binding protein [Shewanella baltica
BA175]
gi|24347626|gb|AAN54850.1|AE015624_3 DNA-binding protein, HU family [Shewanella oneidensis MR-1]
gi|113885511|gb|ABI39563.1| histone family protein DNA-binding protein [Shewanella sp. MR-4]
gi|113889494|gb|ABI43545.1| histone family protein DNA-binding protein [Shewanella sp. MR-7]
gi|120559504|gb|ABM25431.1| histone family protein DNA-binding protein [Shewanella sp.
W3-18-1]
gi|125997046|gb|ABN61121.1| histone family protein DNA-binding protein [Shewanella baltica
OS155]
gi|145564283|gb|ABP75218.1| histone family protein DNA-binding protein [Shewanella
putrefaciens CN-32]
gi|151364743|gb|ABS07743.1| histone family protein DNA-binding protein [Shewanella baltica
OS185]
gi|160860269|gb|ABX48803.1| histone family protein DNA-binding protein [Shewanella baltica
OS195]
gi|217499042|gb|ACK47235.1| histone family protein DNA-binding protein [Shewanella baltica
OS223]
gi|304352232|gb|EFM16630.1| histone family protein DNA-binding protein [Shewanella baltica
OS183]
gi|306912968|gb|EFN43391.1| histone family protein DNA-binding protein [Shewanella baltica
BA175]
gi|315266989|gb|ADT93842.1| histone family protein DNA-binding protein [Shewanella baltica
OS678]
gi|319425895|gb|ADV53969.1| histone family protein DNA-binding protein [Shewanella
putrefaciens 200]
Length = 90
Score = 101 bits (253), Expect = 3e-20, Method: Composition-based stats.
Identities = 30/91 (32%), Positives = 49/91 (53%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI IA ++ + ++ + +T+ L G ++ + GFG+F VR+RA R
Sbjct: 1 MNKSELIEKIA-SGADISKAAAGRALDSFIAAVTEGLKEGDKISLVGFGTFEVRERAERT 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + I + +P F+AGK LK+ +N
Sbjct: 60 GRNPQTGEEIKIAAAKIPAFKAGKALKDAVN 90
>gi|15615918|ref|NP_244222.1| non-specific DNA-binding protein II (HB) (HU) [Bacillus
halodurans C-125]
gi|14194648|sp|Q9K7K5|DBH2_BACHD RecName: Full=DNA-binding protein HU-1
gi|10175979|dbj|BAB07075.1| non-specific DNA-binding protein II (HB) (HU) [Bacillus
halodurans C-125]
Length = 90
Score = 101 bits (253), Expect = 3e-20, Method: Composition-based stats.
Identities = 32/91 (35%), Positives = 56/91 (61%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI +A++ +++ +D ++VN + + + ++LA G V++ GFG+F VR+RAAR
Sbjct: 1 MNKTELIHQVAERT-QMSKKDAGEVVNTVFDVIAESLAQGDSVQLIGFGNFEVRERAARK 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + I + P F+AGK LK+ +
Sbjct: 60 GRNPQTGEEIDIAATKTPAFKAGKQLKDAVK 90
>gi|325268085|ref|ZP_08134731.1| integration host factor beta subunit [Kingella denitrificans ATCC
33394]
gi|324980470|gb|EGC16136.1| integration host factor beta subunit [Kingella denitrificans ATCC
33394]
Length = 99
Score = 101 bits (253), Expect = 3e-20, Method: Composition-based stats.
Identities = 41/98 (41%), Positives = 60/98 (61%), Gaps = 6/98 (6%)
Query: 1 MIKSSLIGTIAKKNPK------LNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVR 54
M KS L+ +A+ + L +DVE V +L++ MT+ALA G R+EIRGFGSF +
Sbjct: 1 MTKSELMARLAEVFAEKHSDSALQAKDVEYSVKVLVDTMTRALAKGQRIEIRGFGSFDLN 60
Query: 55 KRAARLARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
+R AR R P + + V K VP F+ GK L+ER+++
Sbjct: 61 ERPARTGRNPKTGERVQVPAKKVPHFKPGKELRERVDN 98
>gi|319779317|ref|YP_004130230.1| Integration host factor beta subunit [Taylorella equigenitalis
MCE9]
gi|317109341|gb|ADU92087.1| Integration host factor beta subunit [Taylorella equigenitalis
MCE9]
Length = 109
Score = 101 bits (253), Expect = 3e-20, Method: Composition-based stats.
Identities = 40/97 (41%), Positives = 60/97 (61%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI + P+ +D++ V +L+ MT +LA G R+EIRGFGSFS+ +RA R+
Sbjct: 1 MTKSELIDALVASYPQFATRDMDIAVKTILDAMTLSLAQGHRIEIRGFGSFSLSQRAPRV 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDSTL 97
R P +++ V K VP F+AGK L+E+++ L
Sbjct: 61 GRNPRTGEMVEVVGKRVPHFKAGKELREKVDEEFKKL 97
>gi|17988077|ref|NP_540711.1| integration host factor subunit beta [Brucella melitensis bv. 1
str. 16M]
gi|17983827|gb|AAL52975.1| integration host factor beta-subunit [Brucella melitensis bv. 1
str. 16M]
Length = 101
Score = 101 bits (253), Expect = 3e-20, Method: Composition-based stats.
Identities = 47/89 (52%), Positives = 61/89 (68%)
Query: 3 KSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLAR 62
KS L+ IA +NP L +DV IV + +E+T ALA G RVE+RGFG+FSV+ R AR R
Sbjct: 10 KSELVQIIASRNPHLFQRDVVNIVGAVFDEITNALAEGNRVELRGFGAFSVKNRPARSGR 69
Query: 63 APLAQKVISVEEKMVPFFRAGKNLKERLN 91
P + + VEEK VPFF+ GK L++RLN
Sbjct: 70 NPRTGETVDVEEKWVPFFKTGKKLRDRLN 98
>gi|114563759|ref|YP_751272.1| histone family protein DNA-binding protein [Shewanella
frigidimarina NCIMB 400]
gi|114335052|gb|ABI72434.1| histone family protein DNA-binding protein [Shewanella
frigidimarina NCIMB 400]
Length = 91
Score = 101 bits (253), Expect = 3e-20, Method: Composition-based stats.
Identities = 32/92 (34%), Positives = 51/92 (55%), Gaps = 1/92 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI IA ++ + ++ + +T+ L +G ++ + GFG+F VR+RA R
Sbjct: 1 MNKSELIEKIA-SGADISKAAAGRALDSFIAAVTEGLKDGDKISLVGFGTFEVRQRAERT 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P K I + +P F+AGK LK+ +NS
Sbjct: 60 GRNPQTGKEIKIAAANIPAFKAGKALKDAVNS 91
>gi|315633974|ref|ZP_07889263.1| integration host factor beta subunit [Aggregatibacter segnis ATCC
33393]
gi|315477224|gb|EFU67967.1| integration host factor beta subunit [Aggregatibacter segnis ATCC
33393]
Length = 94
Score = 101 bits (252), Expect = 3e-20, Method: Composition-based stats.
Identities = 39/91 (42%), Positives = 60/91 (65%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI + +KN + + VE+ V +LE+M+ L +G R+E+RGFGSFS+ R RL
Sbjct: 1 MTKSELIELLVQKNHNVPVKSVEEAVKAILEQMSYVLESGERIEVRGFGSFSLHCRQPRL 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + + ++ K VP+F+AGK L+ER++
Sbjct: 61 GRNPKTGEQVKLDAKCVPYFKAGKELRERVD 91
>gi|290474660|ref|YP_003467540.1| DNA-binding protein HU-beta [Xenorhabdus bovienii SS-2004]
gi|289173973|emb|CBJ80760.1| DNA-binding protein HU-beta, NS1 (HU-1), plays a role in DNA
replication and in rpo translation [Xenorhabdus
bovienii SS-2004]
Length = 96
Score = 101 bits (252), Expect = 3e-20, Method: Composition-based stats.
Identities = 35/91 (38%), Positives = 52/91 (57%), Gaps = 1/91 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
KS LI IA + ++ ++V+ + ++ AL +G V + GFG+F+VR+RAAR
Sbjct: 7 NKSQLIDKIAA-DVNISKAAAGRVVDAFISSVSDALKDGDDVVLVGFGTFTVRERAARTG 65
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P K I + VP FRAGK LK+ +N
Sbjct: 66 RNPQTGKEIKIAAAKVPAFRAGKGLKDAVNE 96
>gi|294501077|ref|YP_003564777.1| non-specific DNA-binding protein HBsu [Bacillus megaterium QM
B1551]
gi|295706425|ref|YP_003599500.1| non-specific DNA-binding protein HBsu [Bacillus megaterium DSM
319]
gi|294351014|gb|ADE71343.1| non-specific DNA-binding protein HBsu [Bacillus megaterium QM
B1551]
gi|294804084|gb|ADF41150.1| non-specific DNA-binding protein HBsu [Bacillus megaterium DSM
319]
Length = 90
Score = 101 bits (252), Expect = 3e-20, Method: Composition-based stats.
Identities = 32/91 (35%), Positives = 54/91 (59%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI +A+ + +L+ +D K V+ + + + +AL +V++ GFG+F VR+RAAR
Sbjct: 1 MNKTELINAVAEAS-ELSKKDATKAVDAVFDTILEALKAEDKVQLIGFGNFEVRERAARK 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + I + VP F+ GK LK+ +
Sbjct: 60 GRNPQTGEEIEIPASKVPAFKPGKALKDAVK 90
>gi|225181422|ref|ZP_03734865.1| histone family protein DNA-binding protein [Dethiobacter
alkaliphilus AHT 1]
gi|225167820|gb|EEG76628.1| histone family protein DNA-binding protein [Dethiobacter
alkaliphilus AHT 1]
Length = 90
Score = 101 bits (252), Expect = 3e-20, Method: Composition-based stats.
Identities = 38/91 (41%), Positives = 55/91 (60%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI +A+ N L +D EK+VN + + + ALA G +V++ GFG+F VR+R AR
Sbjct: 1 MNKSELISNVAE-NAGLTKKDTEKVVNAIFDTIGDALAKGDKVQVIGFGTFDVRERKARE 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P I++ VP F+AGK LK+ +
Sbjct: 60 GRNPATGDTITIPAVKVPVFKAGKALKDTVK 90
>gi|17546433|ref|NP_519835.1| DNA-binding protein HU-beta [Ralstonia solanacearum GMI1000]
gi|207723583|ref|YP_002253982.1| dna-binding protein hu-beta [Ralstonia solanacearum MolK2]
gi|207743053|ref|YP_002259445.1| dna-binding protein hu-beta [Ralstonia solanacearum IPO1609]
gi|300691407|ref|YP_003752402.1| DNA-binding protein HU-beta, transcriptional regulator, beta
subunit [Ralstonia solanacearum PSI07]
gi|300703975|ref|YP_003745577.1| DNA-binding protein hu-beta, transcriptional regulator subunit
beta [Ralstonia solanacearum CFBP2957]
gi|17428731|emb|CAD15416.1| probable dna-binding protein hu-beta [Ralstonia solanacearum
GMI1000]
gi|206588785|emb|CAQ35748.1| dna-binding protein hu-beta [Ralstonia solanacearum MolK2]
gi|206594450|emb|CAQ61377.1| dna-binding protein hu-beta [Ralstonia solanacearum IPO1609]
gi|299071638|emb|CBJ42962.1| DNA-binding protein HU-beta, transcriptional regulator, beta
subunit [Ralstonia solanacearum CFBP2957]
gi|299078467|emb|CBJ51119.1| DNA-binding protein HU-beta, transcriptional regulator, beta
subunit [Ralstonia solanacearum PSI07]
Length = 90
Score = 101 bits (252), Expect = 3e-20, Method: Composition-based stats.
Identities = 31/91 (34%), Positives = 49/91 (53%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI +A + ++ + ++ L+ + AL +GG V + GFG+F V +R+AR
Sbjct: 1 MNKTDLIDHVAAQT-DMSKAAAGRAIDALIGGIKDALCDGGSVTLVGFGTFLVGQRSARA 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P I +E V F+ GK LK+ LN
Sbjct: 60 GRNPRTGATIKIEGAKVAKFKPGKALKDALN 90
>gi|167624683|ref|YP_001674977.1| histone family protein DNA-binding protein [Shewanella
halifaxensis HAW-EB4]
gi|212636024|ref|YP_002312549.1| histone-like DNA-binding protein [Shewanella piezotolerans WP3]
gi|167354705|gb|ABZ77318.1| histone family protein DNA-binding protein [Shewanella
halifaxensis HAW-EB4]
gi|212557508|gb|ACJ29962.1| Histone-like bacterial DNA-binding protein [Shewanella
piezotolerans WP3]
Length = 90
Score = 101 bits (252), Expect = 3e-20, Method: Composition-based stats.
Identities = 31/91 (34%), Positives = 48/91 (52%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI IA ++ + ++ + +T L G ++ + GFG+F VR+RA R
Sbjct: 1 MNKSELIEKIA-SGADISKAAAGRALDSFIGAVTDGLKEGDKIALVGFGTFEVRQRAERT 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P K I + +P F+AGK LK+ +N
Sbjct: 60 GRNPQTGKEIKIAAANIPAFKAGKALKDAVN 90
>gi|225017256|ref|ZP_03706448.1| hypothetical protein CLOSTMETH_01182 [Clostridium methylpentosum
DSM 5476]
gi|224950031|gb|EEG31240.1| hypothetical protein CLOSTMETH_01182 [Clostridium methylpentosum
DSM 5476]
Length = 91
Score = 101 bits (252), Expect = 3e-20, Method: Composition-based stats.
Identities = 37/90 (41%), Positives = 57/90 (63%), Gaps = 1/90 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI +A K +L+ +D EK V +++ +T+AL G +V++ GFG+F VR+R AR
Sbjct: 1 MTKSDLINAVAAK-AELSKKDAEKAVLSMIDAITEALVEGDKVQLVGFGTFEVRERKARD 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R PL + + + VP F+AGK LK+ +
Sbjct: 60 GRNPLNGEPMHIPATTVPAFKAGKALKDAV 89
>gi|226941262|ref|YP_002796336.1| HupB1 [Laribacter hongkongensis HLHK9]
gi|226716189|gb|ACO75327.1| HupB1 [Laribacter hongkongensis HLHK9]
Length = 89
Score = 101 bits (252), Expect = 3e-20, Method: Composition-based stats.
Identities = 35/90 (38%), Positives = 48/90 (53%), Gaps = 1/90 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI IA + L K ++ ++E +T+AL G V + GFGSF V +RA R
Sbjct: 1 MNKSELIDAIAA-SADLPKAAAGKALDGMIEALTEALKKGDTVTLVGFGSFYVGERAERK 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P + I++ P FR GK LK+ L
Sbjct: 60 GRNPKTGEEITIPSAKTPKFRPGKALKDAL 89
>gi|15965011|ref|NP_385364.1| histone-like protein [Sinorhizobium meliloti 1021]
gi|150396098|ref|YP_001326565.1| histone family protein DNA-binding protein [Sinorhizobium medicae
WSM419]
gi|307301083|ref|ZP_07580852.1| histone family protein DNA-binding protein [Sinorhizobium
meliloti BL225C]
gi|307317817|ref|ZP_07597255.1| histone family protein DNA-binding protein [Sinorhizobium
meliloti AK83]
gi|544140|sp|P02344|DBH_RHIME RecName: Full=DNA-binding protein HRm
gi|6175842|gb|AAF05301.1|AF167159_2 histone-like protein [Sinorhizobium meliloti]
gi|15074190|emb|CAC45837.1| DNA-binding protein HU [Sinorhizobium meliloti 1021]
gi|150027613|gb|ABR59730.1| histone family protein DNA-binding protein [Sinorhizobium medicae
WSM419]
gi|306896579|gb|EFN27327.1| histone family protein DNA-binding protein [Sinorhizobium
meliloti AK83]
gi|306904038|gb|EFN34624.1| histone family protein DNA-binding protein [Sinorhizobium
meliloti BL225C]
Length = 90
Score = 101 bits (252), Expect = 3e-20, Method: Composition-based stats.
Identities = 32/91 (35%), Positives = 48/91 (52%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ L+ +A K L+ D V+ + E + L NGG + + GFG+FSV +R A
Sbjct: 1 MNKNELVAAVADK-AGLSKADASSAVDAVFETIQGELKNGGDIRLVGFGNFSVSRREASK 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + + + VP F AGK LK+ +N
Sbjct: 60 GRNPSTGAEVDIPARNVPKFTAGKGLKDAVN 90
>gi|304415503|ref|ZP_07396140.1| integration host factor (IHF) DNA-binding protein beta subunit
[Candidatus Regiella insecticola LSR1]
gi|304282642|gb|EFL91168.1| integration host factor (IHF) DNA-binding protein beta subunit
[Candidatus Regiella insecticola LSR1]
Length = 100
Score = 101 bits (252), Expect = 3e-20, Method: Composition-based stats.
Identities = 35/92 (38%), Positives = 54/92 (58%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI + K+ ++++DV++ V + M LA G R+EIRGFGSF + RAAR
Sbjct: 1 MNKSELIKRLHKRLSHMSFKDVDESVGEIFRFMIATLAKGNRIEIRGFGSFCLHYRAART 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P + + + K V F+ GK+L+ ++S
Sbjct: 61 GRNPKTGEPVELPSKYVAHFKPGKDLRAGVDS 92
>gi|258406020|ref|YP_003198762.1| histone family protein DNA-binding protein [Desulfohalobium
retbaense DSM 5692]
gi|257798247|gb|ACV69184.1| histone family protein DNA-binding protein [Desulfohalobium
retbaense DSM 5692]
Length = 90
Score = 101 bits (252), Expect = 3e-20, Method: Composition-based stats.
Identities = 35/91 (38%), Positives = 51/91 (56%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LIG +A+K+ L D E+ VN LE + L G++ + GFG+FSV +R AR
Sbjct: 1 MTKADLIGKVAEKS-GLTKADAERAVNGFLESVEDTLVKEGKLTMTGFGTFSVEERKARK 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + I++ V FR GK LK+ +
Sbjct: 60 GRNPQTGQEITIPASKVVKFRPGKLLKDAVK 90
>gi|77919284|ref|YP_357099.1| DNA-binding protein HU-beta, NS1(HU-1) [Pelobacter carbinolicus
DSM 2380]
gi|77545367|gb|ABA88929.1| DNA-binding protein HU-beta, NS1(HU-1) [Pelobacter carbinolicus
DSM 2380]
Length = 90
Score = 101 bits (252), Expect = 4e-20, Method: Composition-based stats.
Identities = 32/91 (35%), Positives = 55/91 (60%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ L+ +A+K L+ + EK + + +T+AL G +V + GFG+FSV +RAAR+
Sbjct: 1 MTKADLVNAMAEK-AGLSKAETEKAIKAFTDVITEALKAGEKVALVGFGTFSVGERAARV 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
+ P + +++ VP F+ GK LK+ +N
Sbjct: 60 GQNPQTGEKMNIPAAKVPKFKPGKALKDSVN 90
>gi|227821610|ref|YP_002825580.1| DNA-binding protein HRm [Sinorhizobium fredii NGR234]
gi|227340609|gb|ACP24827.1| DNA-binding protein HRm [Sinorhizobium fredii NGR234]
Length = 90
Score = 101 bits (252), Expect = 4e-20, Method: Composition-based stats.
Identities = 31/91 (34%), Positives = 49/91 (53%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ L+ +A+K L+ D V+ + E + L +GG + + GFG+FSV +R A
Sbjct: 1 MNKNELVSAVAEK-AGLSKADASSAVDAVFETIQGELKSGGDIRLVGFGNFSVTRREASK 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + + + VP F AGK LK+ +N
Sbjct: 60 GRNPSTGAEVDIPARNVPKFTAGKGLKDAVN 90
>gi|205373831|ref|ZP_03226633.1| hypothetical protein Bcoam_11505 [Bacillus coahuilensis m4-4]
Length = 90
Score = 101 bits (252), Expect = 4e-20, Method: Composition-based stats.
Identities = 35/91 (38%), Positives = 55/91 (60%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI +A+ +L+ +D K V+ + E + ALANG +V++ GFG+F VR+R+AR
Sbjct: 1 MNKTELINAVAEAT-ELSKKDATKAVDAVFESIQNALANGDKVQLIGFGNFEVRERSARK 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + I + VP F+ GK LK+ +
Sbjct: 60 GRNPQTGEEIEIAASKVPAFKPGKALKDAVK 90
>gi|149180539|ref|ZP_01859043.1| non-specific DNA-binding protein [Bacillus sp. SG-1]
gi|148851692|gb|EDL65838.1| non-specific DNA-binding protein [Bacillus sp. SG-1]
Length = 91
Score = 101 bits (252), Expect = 4e-20, Method: Composition-based stats.
Identities = 32/92 (34%), Positives = 55/92 (59%), Gaps = 1/92 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI +A+ + +L+ +D E V +L+ + LA G +V++ GFG+F VR+R+AR
Sbjct: 1 MNKTDLINAVAE-SAELSKKDAENAVKAVLQNIEDTLAKGEKVQLIGFGNFEVRERSARK 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P + + + P F+ GK LK+ +N+
Sbjct: 60 GRNPQTGEEMEIPATKQPAFKPGKALKDSVNA 91
>gi|127513433|ref|YP_001094630.1| histone family protein DNA-binding protein [Shewanella loihica
PV-4]
gi|126638728|gb|ABO24371.1| histone family protein DNA-binding protein [Shewanella loihica
PV-4]
Length = 90
Score = 101 bits (252), Expect = 4e-20, Method: Composition-based stats.
Identities = 31/91 (34%), Positives = 49/91 (53%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI IA ++ + ++ + +T L +G ++ + GFG+F VR+RA R
Sbjct: 1 MNKSELIEKIA-SGADISKAAAGRALDSFISAVTDGLKDGDKISLVGFGTFEVRQRAERT 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P K I + +P F+AGK LK+ +N
Sbjct: 60 GRNPQTGKEIKIAAANIPAFKAGKALKDAVN 90
>gi|319408367|emb|CBI82020.1| DNA-binding protein [Bartonella schoenbuchensis R1]
Length = 92
Score = 101 bits (252), Expect = 4e-20, Method: Composition-based stats.
Identities = 38/93 (40%), Positives = 54/93 (58%), Gaps = 1/93 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS L+ +IA+K ++ I++ + +T+ALA+GG V + GFGSF V KRAA
Sbjct: 1 MNKSELVNSIAEK-AGVSKAQAGSILDAFIASVTEALASGGDVRLPGFGSFEVSKRAATK 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSP 93
R P I + + VP F AGK+LKE +N
Sbjct: 60 GRNPSTGVEIHIPARSVPKFSAGKSLKEAVNKK 92
>gi|89099134|ref|ZP_01172013.1| non-specific DNA-binding protein HBsu; signal recognition
particle-like (SRP) component [Bacillus sp. NRRL
B-14911]
gi|89086264|gb|EAR65386.1| non-specific DNA-binding protein HBsu; signal recognition
particle-like (SRP) component [Bacillus sp. NRRL
B-14911]
Length = 90
Score = 101 bits (252), Expect = 4e-20, Method: Composition-based stats.
Identities = 34/91 (37%), Positives = 53/91 (58%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI +A+ +L+ +D K V+ + + + AL NG +V++ GFG+F VR+RAAR
Sbjct: 1 MNKTELINAVAEA-GELSKKDATKAVDAVFDTILNALKNGDKVQLIGFGNFEVRERAARK 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P I + VP F+ GK LK+ +
Sbjct: 60 GRNPQTGDEIEIAASKVPAFKPGKALKDAVK 90
>gi|212709200|ref|ZP_03317328.1| hypothetical protein PROVALCAL_00233 [Providencia alcalifaciens
DSM 30120]
gi|212688112|gb|EEB47640.1| hypothetical protein PROVALCAL_00233 [Providencia alcalifaciens
DSM 30120]
Length = 96
Score = 101 bits (252), Expect = 4e-20, Method: Composition-based stats.
Identities = 35/90 (38%), Positives = 52/90 (57%), Gaps = 1/90 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
KS LI IA + ++ ++V+ + +T +L+ G V + GFG+F+VR+RAAR
Sbjct: 7 NKSQLIEKIAAE-ANISKAAAGRVVDAFVASVTTSLSKGDDVTLVGFGTFNVRQRAARTG 65
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P K I + VP FRAGK LK+ +N
Sbjct: 66 RNPQTGKEIKIAAAKVPAFRAGKGLKDAVN 95
>gi|332970683|gb|EGK09664.1| integration host factor beta subunit [Kingella kingae ATCC 23330]
Length = 101
Score = 101 bits (252), Expect = 4e-20, Method: Composition-based stats.
Identities = 39/98 (39%), Positives = 59/98 (60%), Gaps = 6/98 (6%)
Query: 1 MIKSSLIGTIAKKNPK------LNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVR 54
M KS L+ +A+ + L +D+E V +L++ MT+ALA G R+EIRGFGSF +
Sbjct: 1 MTKSELMAHLAEVFAERNADSELQSKDIEYSVKVLVDTMTRALAKGQRIEIRGFGSFDLN 60
Query: 55 KRAARLARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R R+ R P + + V +K VP F+ GK L+ER++
Sbjct: 61 HRPPRIGRNPKTGERVEVPQKYVPHFKPGKELRERVDE 98
>gi|299066734|emb|CBJ37928.1| DNA-binding protein HU-beta, transcriptional regulator, beta
subunit [Ralstonia solanacearum CMR15]
Length = 90
Score = 101 bits (252), Expect = 4e-20, Method: Composition-based stats.
Identities = 31/91 (34%), Positives = 50/91 (54%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI +A + ++ + ++ L++ + AL +GG V + GFG+F V +R+AR
Sbjct: 1 MNKTDLIDHVAAQT-DMSKAAAGRAIDALIDGIKDALCDGGSVTLVGFGTFLVGQRSARA 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P I +E V F+ GK LK+ LN
Sbjct: 60 GRNPRTGATIKIEGAKVAKFKPGKALKDALN 90
>gi|56964681|ref|YP_176412.1| DNA-binding protein HU [Bacillus clausii KSM-K16]
gi|56910924|dbj|BAD65451.1| DNA-binding protein HU [Bacillus clausii KSM-K16]
Length = 90
Score = 101 bits (252), Expect = 4e-20, Method: Composition-based stats.
Identities = 32/91 (35%), Positives = 54/91 (59%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI +A++ +L+ +D VN + + ++++L G V++ GFG+F VR+RAAR
Sbjct: 1 MNKTELINALAERT-QLSKKDASAAVNSMFDLISESLGKGESVQLIGFGNFEVRERAARK 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + I + P F+AGK LK+ +
Sbjct: 60 GRNPQTGEEIDIAATKTPAFKAGKQLKDAVK 90
>gi|70731343|ref|YP_261084.1| DNA-binding protein HU subunit beta [Pseudomonas fluorescens
Pf-5]
gi|14194650|sp|Q9KHS6|DBHB_PSEF5 RecName: Full=DNA-binding protein HU-beta
gi|7644386|gb|AAF65565.1|AF250140_2 histone-like protein HU [Pseudomonas fluorescens]
gi|68345642|gb|AAY93248.1| DNA-binding protein HU, beta subunit [Pseudomonas fluorescens
Pf-5]
Length = 90
Score = 101 bits (252), Expect = 4e-20, Method: Composition-based stats.
Identities = 35/91 (38%), Positives = 49/91 (53%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI IA + L + ++ ++E +T AL G V + GFG+FSV R AR+
Sbjct: 1 MNKSELIDAIAA-SADLPKAAAGRALDAVIESVTGALKAGDSVVLVGFGTFSVTDRPARI 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P K + + P F+AGK LKE +N
Sbjct: 60 GRNPQTGKTLEIAAAKKPGFKAGKALKEAVN 90
>gi|47565972|ref|ZP_00237010.1| DNA-binding protein HU [Bacillus cereus G9241]
gi|47556889|gb|EAL15219.1| DNA-binding protein HU [Bacillus cereus G9241]
Length = 90
Score = 101 bits (252), Expect = 4e-20, Method: Composition-based stats.
Identities = 32/91 (35%), Positives = 53/91 (58%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI +A+ + L+ +D K V+ + + + +AL G +V++ GFG+F VR+RAAR
Sbjct: 1 MNKTDLINAVAEASS-LSKKDATKAVDAVFDSILEALKQGDKVQLIGFGNFEVRERAARK 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + I + VP F+ GK K+ +
Sbjct: 60 GRNPQTGEEIEIAASKVPAFKPGKAFKDAVK 90
>gi|325521368|gb|EGD00211.1| histone family protein DNA-binding protein [Burkholderia sp.
TJI49]
Length = 92
Score = 101 bits (252), Expect = 4e-20, Method: Composition-based stats.
Identities = 31/92 (33%), Positives = 48/92 (52%), Gaps = 1/92 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K LI +A ++ D K V +L+ +T A++ G V++ GFG+FS +RAAR
Sbjct: 1 MNKQELIDAVAT-GAGVSKTDASKTVQAVLDAITDAVSRGESVQLIGFGAFSQGQRAART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P I++ F AGK K+ +N+
Sbjct: 60 GRNPTTGAEIAIPAANTVKFTAGKAFKDGVNA 91
>gi|289579291|ref|YP_003477918.1| histone family protein DNA-binding protein [Thermoanaerobacter
italicus Ab9]
gi|297545442|ref|YP_003677744.1| histone family protein DNA-binding protein [Thermoanaerobacter
mathranii subsp. mathranii str. A3]
gi|307264995|ref|ZP_07546556.1| histone family protein DNA-binding protein [Thermoanaerobacter
wiegelii Rt8.B1]
gi|326390096|ref|ZP_08211658.1| histone family protein DNA-binding protein [Thermoanaerobacter
ethanolicus JW 200]
gi|289529004|gb|ADD03356.1| histone family protein DNA-binding protein [Thermoanaerobacter
italicus Ab9]
gi|296843217|gb|ADH61733.1| histone family protein DNA-binding protein [Thermoanaerobacter
mathranii subsp. mathranii str. A3]
gi|306919980|gb|EFN50193.1| histone family protein DNA-binding protein [Thermoanaerobacter
wiegelii Rt8.B1]
gi|325993961|gb|EGD52391.1| histone family protein DNA-binding protein [Thermoanaerobacter
ethanolicus JW 200]
Length = 91
Score = 101 bits (252), Expect = 4e-20, Method: Composition-based stats.
Identities = 38/92 (41%), Positives = 60/92 (65%), Gaps = 1/92 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ L+ IA+K+ +L +D EK +N +E + +AL NG +V++ GFG+F VR+RA R
Sbjct: 1 MNKADLVAKIAEKS-ELTKKDAEKALNAFIEAVEEALKNGDKVQLVGFGTFEVRERAERK 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P ++ I++ P F+AGK LK+ +NS
Sbjct: 60 GRNPQTREEITIPASKAPIFKAGKALKDLVNS 91
>gi|330814759|ref|YP_004362934.1| histone family protein DNA-binding protein [Burkholderia gladioli
BSR3]
gi|327374751|gb|AEA66102.1| histone family protein DNA-binding protein [Burkholderia gladioli
BSR3]
Length = 92
Score = 100 bits (251), Expect = 4e-20, Method: Composition-based stats.
Identities = 31/92 (33%), Positives = 49/92 (53%), Gaps = 1/92 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K LI +A + ++ D K V +L+ +T+A+ G V++ GFG+FS +RAAR
Sbjct: 1 MNKQELIDAVAA-SVGVSKTDAGKTVQAVLDVITEAVGRGESVQLIGFGAFSQGQRAART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P I++ F AGK K+ +N+
Sbjct: 60 GRNPSTGAEIAIPAANTVKFTAGKPFKDVVNA 91
>gi|303256838|ref|ZP_07342852.1| integration host factor, beta subunit [Burkholderiales bacterium
1_1_47]
gi|330998915|ref|ZP_08322642.1| integration host factor, beta subunit [Parasutterella
excrementihominis YIT 11859]
gi|302860329|gb|EFL83406.1| integration host factor, beta subunit [Burkholderiales bacterium
1_1_47]
gi|329576129|gb|EGG57648.1| integration host factor, beta subunit [Parasutterella
excrementihominis YIT 11859]
Length = 100
Score = 100 bits (251), Expect = 4e-20, Method: Composition-based stats.
Identities = 42/96 (43%), Positives = 57/96 (59%), Gaps = 4/96 (4%)
Query: 1 MIKSSLIGTIAKK----NPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKR 56
M KS LI +A L +DV+ VN +L MT ALA G R+EIRGFGSFS+ R
Sbjct: 1 MTKSELIALLAADPAVIGNHLTARDVDDAVNSILNAMTAALAQGSRIEIRGFGSFSLNYR 60
Query: 57 AARLARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R+ R P + + V K+VP F+AGK ++ER++
Sbjct: 61 PPRVGRNPKSGDTVEVPAKIVPHFKAGKEMRERVDK 96
>gi|251794085|ref|YP_003008816.1| histone family protein DNA-binding protein [Paenibacillus sp.
JDR-2]
gi|247541711|gb|ACS98729.1| histone family protein DNA-binding protein [Paenibacillus sp.
JDR-2]
Length = 90
Score = 100 bits (251), Expect = 4e-20, Method: Composition-based stats.
Identities = 41/91 (45%), Positives = 57/91 (62%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI IA K+ L +DVE ++N L E+T ALA G +V++ GFG+F RKR+ R+
Sbjct: 1 MNKTDLINNIATKS-GLTKRDVEAVLNGFLGEVTDALAGGDKVQLIGFGTFETRKRSGRV 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P K IS+ E VP F+AG LK+ +
Sbjct: 60 GRNPQTGKEISIPESKVPAFKAGNKLKDAIK 90
>gi|298368578|ref|ZP_06979896.1| integration host factor, beta subunit [Neisseria sp. oral taxon
014 str. F0314]
gi|298282581|gb|EFI24068.1| integration host factor, beta subunit [Neisseria sp. oral taxon
014 str. F0314]
Length = 104
Score = 100 bits (251), Expect = 4e-20, Method: Composition-based stats.
Identities = 41/96 (42%), Positives = 59/96 (61%), Gaps = 5/96 (5%)
Query: 1 MIKSSLIGTIAK-----KNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRK 55
M KS L+ +A+ L +DVE V +L++ MT++LA G R+EIRGFGSF +
Sbjct: 1 MTKSELMVRLAEVFAEKNGTHLMAKDVEYSVKVLVDTMTRSLARGQRIEIRGFGSFDLNH 60
Query: 56 RAARLARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R AR+ R P + + V EK VP F+ GK L+ER++
Sbjct: 61 RPARIGRNPKTGERVEVPEKHVPHFKPGKELRERVD 96
>gi|237803593|ref|ZP_04591178.1| DNA-binding protein HU, beta subunit [Pseudomonas syringae pv.
oryzae str. 1_6]
gi|331025575|gb|EGI05631.1| DNA-binding protein HU, beta subunit [Pseudomonas syringae pv.
oryzae str. 1_6]
Length = 90
Score = 100 bits (251), Expect = 4e-20, Method: Composition-based stats.
Identities = 33/91 (36%), Positives = 49/91 (53%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI IA + + + ++ ++E +T AL G V + GFG+FSV R AR+
Sbjct: 1 MNKSELIDAIAA-SADIPKAAAGRALDAVIESVTGALKAGDSVVLVGFGTFSVTDRPARV 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P K + + P F+AGK LK+ +N
Sbjct: 60 GRNPQTGKTLQIAAAKKPGFKAGKALKDAVN 90
>gi|125470062|gb|ABN42254.1| gp50 [Sodalis phage phiSG1]
Length = 90
Score = 100 bits (251), Expect = 4e-20, Method: Composition-based stats.
Identities = 33/90 (36%), Positives = 50/90 (55%), Gaps = 1/90 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K LI +++K ++ +++ L E +TQ LA G V + GFG+F V+ RA R
Sbjct: 1 MNKPELIRAVSEK-ADISQAKAGLVIDALTEAVTQTLAAGDVVSLVGFGTFEVKSRAERP 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P + +++ VP FRAGK LKE +
Sbjct: 60 GRNPKTGEAMTIPAARVPAFRAGKGLKEAV 89
>gi|262278925|ref|ZP_06056710.1| nucleoid DNA-binding protein [Acinetobacter calcoaceticus RUH2202]
gi|299770391|ref|YP_003732417.1| integration host factor, beta subunit [Acinetobacter sp. DR1]
gi|262259276|gb|EEY78009.1| nucleoid DNA-binding protein [Acinetobacter calcoaceticus RUH2202]
gi|298700479|gb|ADI91044.1| integration host factor, beta subunit [Acinetobacter sp. DR1]
Length = 100
Score = 100 bits (251), Expect = 4e-20, Method: Composition-based stats.
Identities = 38/94 (40%), Positives = 56/94 (59%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
KS LI IA KNP L VE+ V +++++M +AL+ R+EIRGFGSF++ R R+
Sbjct: 7 NKSDLIERIALKNPHLAEPLVEEAVKIMIDQMIEALSTDNRIEIRGFGSFALHHRDPRVG 66
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDS 95
R P + + V K VP F+ GK L++ +N
Sbjct: 67 RNPKTGRSVEVAAKAVPHFKPGKALRDAVNESGK 100
>gi|169633383|ref|YP_001707119.1| integration host factor (IHF),beta subunit, site specific
recombination [Acinetobacter baumannii SDF]
gi|169796131|ref|YP_001713924.1| integration host factor (IHF),beta subunit, site specific
recombination [Acinetobacter baumannii AYE]
gi|184157940|ref|YP_001846279.1| nucleoid DNA-binding protein [Acinetobacter baumannii ACICU]
gi|213157135|ref|YP_002319180.1| integration host factor, beta subunit [Acinetobacter baumannii
AB0057]
gi|215483585|ref|YP_002325806.1| integration host factor, beta subunit [Acinetobacter baumannii
AB307-0294]
gi|239502183|ref|ZP_04661493.1| integration host factor, beta subunit [Acinetobacter baumannii
AB900]
gi|260555181|ref|ZP_05827402.1| integration host factor, beta subunit [Acinetobacter baumannii ATCC
19606]
gi|301345930|ref|ZP_07226671.1| integration host factor, beta subunit [Acinetobacter baumannii
AB056]
gi|301510601|ref|ZP_07235838.1| integration host factor, beta subunit [Acinetobacter baumannii
AB058]
gi|301597404|ref|ZP_07242412.1| integration host factor, beta subunit [Acinetobacter baumannii
AB059]
gi|332851785|ref|ZP_08433710.1| integration host factor, beta subunit [Acinetobacter baumannii
6013150]
gi|332865835|ref|ZP_08436619.1| integration host factor, beta subunit [Acinetobacter baumannii
6013113]
gi|332872777|ref|ZP_08440743.1| integration host factor, beta subunit [Acinetobacter baumannii
6014059]
gi|169149058|emb|CAM86935.1| integration host factor (IHF),beta subunit, site specific
recombination [Acinetobacter baumannii AYE]
gi|169152175|emb|CAP01078.1| integration host factor (IHF),beta subunit, site specific
recombination [Acinetobacter baumannii]
gi|183209534|gb|ACC56932.1| Bacterial nucleoid DNA-binding protein [Acinetobacter baumannii
ACICU]
gi|193077208|gb|ABO12000.2| integration host factor beta subunit [Acinetobacter baumannii ATCC
17978]
gi|213056295|gb|ACJ41197.1| integration host factor, beta subunit [Acinetobacter baumannii
AB0057]
gi|213986032|gb|ACJ56331.1| integration host factor, beta subunit [Acinetobacter baumannii
AB307-0294]
gi|260411723|gb|EEX05020.1| integration host factor, beta subunit [Acinetobacter baumannii ATCC
19606]
gi|322508259|gb|ADX03713.1| himD [Acinetobacter baumannii 1656-2]
gi|323517885|gb|ADX92266.1| nucleoid DNA-binding protein [Acinetobacter baumannii TCDC-AB0715]
gi|332729792|gb|EGJ61127.1| integration host factor, beta subunit [Acinetobacter baumannii
6013150]
gi|332735047|gb|EGJ66132.1| integration host factor, beta subunit [Acinetobacter baumannii
6013113]
gi|332739074|gb|EGJ69935.1| integration host factor, beta subunit [Acinetobacter baumannii
6014059]
Length = 100
Score = 100 bits (251), Expect = 4e-20, Method: Composition-based stats.
Identities = 39/94 (41%), Positives = 57/94 (60%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
KS LI IA KNP L VE+ V +++++M +AL++ R+EIRGFGSF++ R R+
Sbjct: 7 NKSDLIERIALKNPHLAEPLVEEAVKIMIDQMIEALSSDNRIEIRGFGSFALHHREPRVG 66
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDS 95
R P K + V K VP F+ GK L++ +N
Sbjct: 67 RNPKTGKSVDVAAKAVPHFKPGKALRDAVNESGK 100
>gi|121602375|ref|YP_988864.1| DNA-binding protein HU-beta [Bartonella bacilliformis KC583]
gi|120614552|gb|ABM45153.1| DNA-binding protein HU-beta [Bartonella bacilliformis KC583]
Length = 92
Score = 100 bits (251), Expect = 4e-20, Method: Composition-based stats.
Identities = 36/92 (39%), Positives = 52/92 (56%), Gaps = 1/92 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS L+ +IA K ++ +++ + +T+AL GG V + GFGSF V +RAA
Sbjct: 1 MNKSELVNSIAAK-AGVSKAQAGSVLDAFIASVTEALGEGGDVRLPGFGSFEVSRRAATK 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P I++ + VP F AGKNLKE +N
Sbjct: 60 GRNPSTGAEINIPARSVPKFSAGKNLKEAVNK 91
>gi|296313665|ref|ZP_06863606.1| DNA-binding protein HU-beta [Neisseria polysaccharea ATCC 43768]
gi|296839808|gb|EFH23746.1| DNA-binding protein HU-beta [Neisseria polysaccharea ATCC 43768]
Length = 89
Score = 100 bits (251), Expect = 5e-20, Method: Composition-based stats.
Identities = 32/90 (35%), Positives = 48/90 (53%), Gaps = 1/90 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI IA++ ++ +K ++ +T AL G V + GFG+F V +RA R
Sbjct: 1 MNKSELIEAIAQE-AGISKVAAQKALDATTNAVTNALKQGDTVTLVGFGTFYVGERAERQ 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P + +++ P FRAGK LK+ L
Sbjct: 60 GRNPKTGEPLTIAAAKTPKFRAGKALKDAL 89
>gi|253576875|ref|ZP_04854200.1| histone family protein DNA-binding protein [Paenibacillus sp.
oral taxon 786 str. D14]
gi|251843742|gb|EES71765.1| histone family protein DNA-binding protein [Paenibacillus sp.
oral taxon 786 str. D14]
Length = 90
Score = 100 bits (251), Expect = 5e-20, Method: Composition-based stats.
Identities = 39/91 (42%), Positives = 55/91 (60%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI I+ K+ L +DVE ++N L E+T ALA+G +V++ GFG+F RKR+ R
Sbjct: 1 MNKTDLINNISSKS-GLTKKDVESVLNGFLGEITDALASGDKVQLIGFGTFETRKRSGRT 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P K I + VP F+AG LKE +
Sbjct: 60 GRNPQTGKTIEIPASTVPAFKAGNKLKEAVK 90
>gi|146307081|ref|YP_001187546.1| nucleoid protein HU beta subunit [Pseudomonas mendocina ymp]
gi|330503120|ref|YP_004379989.1| histone-like DNA-binding protein [Pseudomonas mendocina NK-01]
gi|145575282|gb|ABP84814.1| bacterial nucleoid protein HU beta subunit [Pseudomonas mendocina
ymp]
gi|328917406|gb|AEB58237.1| histone-like DNA-binding protein [Pseudomonas mendocina NK-01]
Length = 90
Score = 100 bits (251), Expect = 5e-20, Method: Composition-based stats.
Identities = 35/91 (38%), Positives = 53/91 (58%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI IA + + + ++ ++E +T AL G V + GFG+F+V++RAAR
Sbjct: 1 MNKSELIDAIAA-SADIPKAVAGRALDAVIESVTGALKAGDSVVLVGFGTFAVKERAART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P K IS+ +P F+AGK LK+ +N
Sbjct: 60 GRNPQTGKPISIAAAKIPGFKAGKALKDAVN 90
>gi|262375355|ref|ZP_06068588.1| integration host factor, beta subunit [Acinetobacter lwoffii SH145]
gi|262309609|gb|EEY90739.1| integration host factor, beta subunit [Acinetobacter lwoffii SH145]
Length = 101
Score = 100 bits (251), Expect = 5e-20, Method: Composition-based stats.
Identities = 39/95 (41%), Positives = 56/95 (58%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
KS LI IA KNP L VE+ V +++++M +AL+ R+EIRGFGSF++ R R+
Sbjct: 7 NKSDLIERIALKNPHLAEPLVEEAVKIMIDQMIEALSTDNRIEIRGFGSFALHHREPRVG 66
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDST 96
R P K + V K VP F+ GK L++ +N
Sbjct: 67 RNPKTGKSVEVAAKAVPHFKPGKALRDAVNESAQK 101
>gi|20808810|ref|NP_623981.1| nucleoid DNA-binding protein [Thermoanaerobacter tengcongensis
MB4]
gi|20517460|gb|AAM25585.1| Bacterial nucleoid DNA-binding protein [Thermoanaerobacter
tengcongensis MB4]
Length = 91
Score = 100 bits (251), Expect = 5e-20, Method: Composition-based stats.
Identities = 38/92 (41%), Positives = 60/92 (65%), Gaps = 1/92 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ L+ IA+K+ +L +D EK +N +E + +AL NG +V++ GFG+F VR+RA R
Sbjct: 1 MNKAELVAKIAEKS-ELTKKDAEKALNAFIEAVQEALKNGDKVQLVGFGTFEVRERAERK 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P ++ I++ P F+AGK LK+ +NS
Sbjct: 60 GRNPQTREEITIPASKAPIFKAGKALKDLVNS 91
>gi|322381812|ref|ZP_08055766.1| non-specific DNA-binding protein Hbsu/signal recognition
particle-like protein [Paenibacillus larvae subsp.
larvae B-3650]
gi|321154200|gb|EFX46522.1| non-specific DNA-binding protein Hbsu/signal recognition
particle-like protein [Paenibacillus larvae subsp.
larvae B-3650]
Length = 90
Score = 100 bits (251), Expect = 5e-20, Method: Composition-based stats.
Identities = 35/90 (38%), Positives = 55/90 (61%), Gaps = 1/90 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI +A+ + +L+ +D K V+ + E + +AL G +V++ GFG+F VR+R+AR
Sbjct: 1 MNKSDLIAKVAEAS-ELSKKDATKAVDAVFEAIAEALKEGDKVQLVGFGNFEVRERSARK 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P + I + VP F+ GK LKE +
Sbjct: 60 GRNPQTGEEIEIAASKVPAFKPGKALKEGI 89
>gi|49474142|ref|YP_032184.1| DNA-binding protein [Bartonella quintana str. Toulouse]
gi|49239646|emb|CAF26006.1| DNA-binding protein [Bartonella quintana str. Toulouse]
Length = 92
Score = 100 bits (251), Expect = 5e-20, Method: Composition-based stats.
Identities = 34/93 (36%), Positives = 53/93 (56%), Gaps = 1/93 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS L+ ++A+K ++ +++ + +T+ALA+GG V + GFGSF + RAA
Sbjct: 1 MNKSELVSSVAEK-AGVSKAQAGSVIDAFIASVTEALASGGDVRLPGFGSFEISHRAATK 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSP 93
R P I++ + VP F AGK LKE +N
Sbjct: 60 GRNPSTGVEINIPARSVPKFSAGKTLKEAVNKK 92
>gi|71276514|ref|ZP_00652789.1| Histone-like bacterial DNA-binding protein [Xylella fastidiosa
Dixon]
gi|71901996|ref|ZP_00684043.1| Histone-like bacterial DNA-binding protein [Xylella fastidiosa
Ann-1]
gi|170729735|ref|YP_001775168.1| histone-like protein [Xylella fastidiosa M12]
gi|71162691|gb|EAO12418.1| Histone-like bacterial DNA-binding protein [Xylella fastidiosa
Dixon]
gi|71728241|gb|EAO30425.1| Histone-like bacterial DNA-binding protein [Xylella fastidiosa
Ann-1]
gi|167964528|gb|ACA11538.1| histone-like protein [Xylella fastidiosa M12]
Length = 94
Score = 100 bits (251), Expect = 5e-20, Method: Composition-based stats.
Identities = 31/92 (33%), Positives = 50/92 (54%), Gaps = 1/92 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI +A L+ + + ++ ++ E+T+AL G V + GFG+F VR RA R
Sbjct: 1 MNKTELIDGVAAA-ANLSKVEAGRAIDAVVNEITEALKKGDSVTLVGFGTFQVRPRAERP 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P + + I + P F+ GK LK+ + S
Sbjct: 60 GRNPKSGEPIMIAASNNPSFKPGKALKDAVKS 91
>gi|293608242|ref|ZP_06690545.1| conserved hypothetical protein [Acinetobacter sp. SH024]
gi|292828815|gb|EFF87177.1| conserved hypothetical protein [Acinetobacter sp. SH024]
gi|325122026|gb|ADY81549.1| integration host factor (IHF),beta subunit, site specific
recombination [Acinetobacter calcoaceticus PHEA-2]
Length = 100
Score = 100 bits (251), Expect = 5e-20, Method: Composition-based stats.
Identities = 39/94 (41%), Positives = 56/94 (59%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
KS LI IA KNP L VE+ V +++++M +AL+ R+EIRGFGSF++ R R+
Sbjct: 7 NKSDLIERIALKNPHLAEPLVEEAVKIMIDQMIEALSTDNRIEIRGFGSFALHHRDPRVG 66
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDS 95
R P K + V K VP F+ GK L++ +N
Sbjct: 67 RNPKTGKSVEVAAKAVPHFKPGKALRDAVNESGK 100
>gi|241758757|ref|ZP_04756870.1| DNA-binding protein HU-beta [Neisseria flavescens SK114]
gi|261380122|ref|ZP_05984695.1| DNA-binding protein HU-beta [Neisseria subflava NJ9703]
gi|319638329|ref|ZP_07993092.1| DNA-binding protein HU-beta [Neisseria mucosa C102]
gi|241320965|gb|EER57178.1| DNA-binding protein HU-beta [Neisseria flavescens SK114]
gi|284796958|gb|EFC52305.1| DNA-binding protein HU-beta [Neisseria subflava NJ9703]
gi|317400602|gb|EFV81260.1| DNA-binding protein HU-beta [Neisseria mucosa C102]
Length = 89
Score = 100 bits (251), Expect = 5e-20, Method: Composition-based stats.
Identities = 33/90 (36%), Positives = 49/90 (54%), Gaps = 1/90 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI IA++ ++ +K ++ +T AL NG V + GFG+F V +RA R
Sbjct: 1 MNKSELIEAIAQE-AGISKSAAQKALDATTNAVTNALKNGDTVTLVGFGTFYVGERAERQ 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P + +++ P FRAGK LK+ L
Sbjct: 60 GRNPKTGEPLTIAAAKTPKFRAGKALKDAL 89
>gi|209548853|ref|YP_002280770.1| histone family protein DNA-binding protein [Rhizobium
leguminosarum bv. trifolii WSM2304]
gi|209534609|gb|ACI54544.1| histone family protein DNA-binding protein [Rhizobium
leguminosarum bv. trifolii WSM2304]
Length = 91
Score = 100 bits (251), Expect = 5e-20, Method: Composition-based stats.
Identities = 30/91 (32%), Positives = 46/91 (50%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ L+ +A+K L D V+ + + + L N G + + GFGSF+V RAA
Sbjct: 1 MNKNELVSAVAEK-AGLTKSDAASAVDAVFDVVQGELKNKGDIRLAGFGSFTVSHRAASK 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + + + VP F GK LK+ +N
Sbjct: 60 GRNPSTGAEVDIPARNVPKFTPGKGLKDAVN 90
>gi|90407417|ref|ZP_01215601.1| DNA-binding protein [Psychromonas sp. CNPT3]
gi|90311448|gb|EAS39549.1| DNA-binding protein [Psychromonas sp. CNPT3]
Length = 91
Score = 100 bits (251), Expect = 5e-20, Method: Composition-based stats.
Identities = 33/92 (35%), Positives = 53/92 (57%), Gaps = 1/92 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K LI IA+ + ++ + ++ + +TQAL G V + GFG+F+V+ RAAR
Sbjct: 1 MNKGQLIDNIAE-SADISKAAASRALDAFISSVTQALVEGDNVSLIGFGAFTVKDRAART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P I ++ VP F+AGK+LK+ +N+
Sbjct: 60 GRNPQTGAPIEIKAAKVPAFKAGKSLKDAINA 91
>gi|199598701|ref|ZP_03212115.1| nucleoid DNA-binding protein [Lactobacillus rhamnosus HN001]
gi|258508386|ref|YP_003171137.1| DNA-binding protein HU [Lactobacillus rhamnosus GG]
gi|258539597|ref|YP_003174096.1| nucleoid, histone-like DNA-binding protein HU [Lactobacillus
rhamnosus Lc 705]
gi|199590389|gb|EDY98481.1| nucleoid DNA-binding protein [Lactobacillus rhamnosus HN001]
gi|257148313|emb|CAR87286.1| DNA-binding protein HU [Lactobacillus rhamnosus GG]
gi|257151273|emb|CAR90245.1| DNA-binding protein HU [Lactobacillus rhamnosus Lc 705]
gi|259649700|dbj|BAI41862.1| DNA-binding protein [Lactobacillus rhamnosus GG]
gi|328462383|gb|EGF34439.1| nucleoid, histone-like DNA-binding protein HU [Lactobacillus
rhamnosus MTCC 5462]
Length = 91
Score = 100 bits (251), Expect = 5e-20, Method: Composition-based stats.
Identities = 30/90 (33%), Positives = 48/90 (53%), Gaps = 1/90 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ LI ++A L +D V+ + + +L+ G +V++ GFG+F VR+RAAR
Sbjct: 3 NKAELIESVASAT-GLTKKDATAAVDAVFGSIQDSLSKGDKVQLIGFGNFEVRERAARKG 61
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P I + VP F+ GK LK+ +
Sbjct: 62 RNPQTGAEIKIPASKVPAFKPGKALKDAVK 91
>gi|119470902|ref|ZP_01613486.1| DNA-binding protein HU-beta (NS1) (HU-1) [Alteromonadales
bacterium TW-7]
gi|119445924|gb|EAW27204.1| DNA-binding protein HU-beta (NS1) (HU-1) [Alteromonadales
bacterium TW-7]
Length = 91
Score = 100 bits (251), Expect = 5e-20, Method: Composition-based stats.
Identities = 31/91 (34%), Positives = 51/91 (56%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ L+ IA + +++ + ++ +T AL G V + GFG+FSV++RAAR
Sbjct: 1 MNKAQLVEKIAT-DAEISKAAATRALDAFTGAVTSALKEGDSVALVGFGTFSVKERAART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P I + +P F+AGK LK+++N
Sbjct: 60 GRNPQTGAEIQIAAATIPSFKAGKGLKDQVN 90
>gi|73662582|ref|YP_301363.1| nucleoid DNA-binding protein HU [Staphylococcus saprophyticus
subsp. saprophyticus ATCC 15305]
gi|72495097|dbj|BAE18418.1| bacterial nucleoid DNA-binding protein HU [Staphylococcus
saprophyticus subsp. saprophyticus ATCC 15305]
Length = 90
Score = 100 bits (251), Expect = 5e-20, Method: Composition-based stats.
Identities = 33/91 (36%), Positives = 53/91 (58%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI +A++ L ++ V+ + E + +L+ G +V++ GFG+F VR+RAAR
Sbjct: 1 MNKTDLINAVAEQ-ADLTKKEAGLAVDAVFESIQSSLSKGEKVQLIGFGNFEVRERAARK 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P K I + VP F+AGK LK+ +
Sbjct: 60 GRNPQTGKEIDIPASKVPAFKAGKALKDAVK 90
>gi|253990888|ref|YP_003042244.1| DNA-binding protein HU-beta [Photorhabdus asymbiotica subsp.
asymbiotica ATCC 43949]
gi|253782338|emb|CAQ85502.1| DNA-binding protein HU-beta (NS1) (HU-1) [Photorhabdus
asymbiotica]
Length = 99
Score = 100 bits (251), Expect = 5e-20, Method: Composition-based stats.
Identities = 34/94 (36%), Positives = 54/94 (57%), Gaps = 1/94 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
KS LI IA + ++ ++V+ + +T AL +G V + GFG+F+VR+R+AR
Sbjct: 7 NKSQLIDKIAADS-NISKAAAGRVVDAFISSVTGALKDGDDVALVGFGTFAVRERSARTG 65
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDS 95
R P K + + VP FR GK+LK+ +NS +
Sbjct: 66 RNPQTGKELKIAAAKVPAFRPGKSLKDAVNSNTN 99
>gi|126653367|ref|ZP_01725471.1| DNA-binding protein HU (DNA-binding protein II) [Bacillus sp.
B14905]
gi|299538558|ref|ZP_07051841.1| DNA-binding protein HU [Lysinibacillus fusiformis ZC1]
gi|126589883|gb|EAZ84014.1| DNA-binding protein HU (DNA-binding protein II) [Bacillus sp.
B14905]
gi|298726145|gb|EFI66737.1| DNA-binding protein HU [Lysinibacillus fusiformis ZC1]
gi|327440783|dbj|BAK17148.1| bacterial nucleoid DNA-binding protein [Solibacillus silvestris
StLB046]
Length = 90
Score = 100 bits (251), Expect = 5e-20, Method: Composition-based stats.
Identities = 34/91 (37%), Positives = 53/91 (58%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ L+ ++A+ L+ +D K V + + + ALA G +V++ GFG+F VR+RAAR
Sbjct: 1 MNKTELVNSVAEA-AGLSKKDASKAVEAVFDTIQDALAKGDKVQLIGFGNFEVRERAARK 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P K I + VP F+ GK LK+ +
Sbjct: 60 GRNPQTGKEIEIAASKVPAFKPGKALKDAVK 90
>gi|296131726|ref|YP_003638973.1| histone family protein DNA-binding protein [Thermincola sp. JR]
gi|296030304|gb|ADG81072.1| histone family protein DNA-binding protein [Thermincola potens
JR]
Length = 90
Score = 100 bits (251), Expect = 5e-20, Method: Composition-based stats.
Identities = 36/90 (40%), Positives = 55/90 (61%), Gaps = 1/90 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K L+ ++A+K L +D +K V+ + + +ALA G +V++ GFG+F VR+RAAR
Sbjct: 1 MNKQDLVSSVAEK-AGLTKKDADKAVSAVFASIEEALAKGDKVQLVGFGTFEVRERAARK 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P VI + VP F+AGK LK+ +
Sbjct: 60 GRNPQTGAVIEIAAAKVPAFKAGKALKDAV 89
>gi|85713207|ref|ZP_01044236.1| Bacterial nucleoid DNA-binding protein, IHF beta subunit
[Idiomarina baltica OS145]
gi|85692980|gb|EAQ30949.1| Bacterial nucleoid DNA-binding protein, IHF beta subunit
[Idiomarina baltica OS145]
Length = 94
Score = 100 bits (251), Expect = 5e-20, Method: Composition-based stats.
Identities = 41/92 (44%), Positives = 57/92 (61%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI + K L + VE V +LE+M Q+LA G R+EIRGFGSFS+ RA R+
Sbjct: 1 MTKSELIEKLTLKFSDLPPRTVESSVKDILEQMIQSLAKGRRIEIRGFGSFSLHYRAPRI 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P + ++ K VP F+ GK L+ER+++
Sbjct: 61 GRNPKTGDQVELDGKYVPHFKPGKELRERVDN 92
>gi|157962499|ref|YP_001502533.1| histone family protein DNA-binding protein [Shewanella pealeana
ATCC 700345]
gi|157847499|gb|ABV87998.1| histone family protein DNA-binding protein [Shewanella pealeana
ATCC 700345]
Length = 90
Score = 100 bits (251), Expect = 5e-20, Method: Composition-based stats.
Identities = 31/91 (34%), Positives = 49/91 (53%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI IA ++ + ++ + +T+ L G ++ + GFG+F VR+RA R
Sbjct: 1 MNKSELIEKIA-SGADISKAAAGRALDSFIGAVTEGLKEGDKIALVGFGTFEVRQRAERT 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P K I + +P F+AGK LK+ +N
Sbjct: 60 GRNPQTGKEIKIAAANIPAFKAGKALKDAVN 90
>gi|88798824|ref|ZP_01114407.1| DNA-binding protein HU [Reinekea sp. MED297]
gi|88778587|gb|EAR09779.1| DNA-binding protein HU [Reinekea sp. MED297]
Length = 90
Score = 100 bits (250), Expect = 5e-20, Method: Composition-based stats.
Identities = 31/91 (34%), Positives = 51/91 (56%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI ++ + ++ +++ +T AL G +V + GFG+F+V++RAAR
Sbjct: 1 MNKSELIDA-VAAAADISKASAGRALDAMVDSVTNALKEGDQVVLVGFGTFAVKERAART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + I + VP F+AGK LK+ +N
Sbjct: 60 GRNPQTGEPIQIAAAKVPGFKAGKALKDAVN 90
>gi|169830293|ref|YP_001716275.1| histone family protein DNA-binding protein [Candidatus
Desulforudis audaxviator MP104C]
gi|169637137|gb|ACA58643.1| histone family protein DNA-binding protein [Candidatus
Desulforudis audaxviator MP104C]
Length = 91
Score = 100 bits (250), Expect = 6e-20, Method: Composition-based stats.
Identities = 36/90 (40%), Positives = 57/90 (63%), Gaps = 1/90 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI ++A+K L +D EK ++ +LE + +AL+ G +V++ GFG+F R+RAAR
Sbjct: 1 MNKAELISSVAEKT-NLTKKDAEKALSAMLESIREALSAGDKVQLVGFGTFETRERAARK 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P + I + VP F+AGK L+E +
Sbjct: 60 GRNPQTGEEIDIAATKVPVFKAGKELRESV 89
>gi|117921099|ref|YP_870291.1| histone family protein DNA-binding protein [Shewanella sp. ANA-3]
gi|117613431|gb|ABK48885.1| histone family protein DNA-binding protein [Shewanella sp. ANA-3]
Length = 90
Score = 100 bits (250), Expect = 6e-20, Method: Composition-based stats.
Identities = 30/91 (32%), Positives = 49/91 (53%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI IA ++ + ++ + +T+ L G ++ + GFG+F VR+RA R
Sbjct: 1 MNKSELIEKIA-SGADISKAAAGRALDSFIAAVTEGLKEGDKISLVGFGTFEVRERAERT 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + I + +P F+AGK LK+ +N
Sbjct: 60 GRNPQTGQEIKIAAAKIPAFKAGKALKDAVN 90
>gi|255320505|ref|ZP_05361686.1| integration host factor, beta subunit [Acinetobacter radioresistens
SK82]
gi|262378397|ref|ZP_06071554.1| integration host factor, beta subunit [Acinetobacter radioresistens
SH164]
gi|255302477|gb|EET81713.1| integration host factor, beta subunit [Acinetobacter radioresistens
SK82]
gi|262299682|gb|EEY87594.1| integration host factor, beta subunit [Acinetobacter radioresistens
SH164]
Length = 101
Score = 100 bits (250), Expect = 6e-20, Method: Composition-based stats.
Identities = 39/95 (41%), Positives = 57/95 (60%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
KS LI IA KNP L VE+ V +++++M +AL+ R+EIRGFGSF++ R R+
Sbjct: 7 NKSDLIERIALKNPHLAEPLVEEAVKIMIDQMIEALSTDNRIEIRGFGSFALHHREPRVG 66
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDST 96
R P K + V K VP F+ GK L++ +N +
Sbjct: 67 RNPKTGKAVEVAAKAVPHFKPGKALRDAVNESANK 101
>gi|71282434|ref|YP_268603.1| HU family DNA-binding protein [Colwellia psychrerythraea 34H]
gi|71148174|gb|AAZ28647.1| DNA-binding protein, HU family [Colwellia psychrerythraea 34H]
Length = 91
Score = 100 bits (250), Expect = 6e-20, Method: Composition-based stats.
Identities = 34/91 (37%), Positives = 50/91 (54%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS L+ IA+ ++ + ++ L+ +T LANGG V + GFG++ V RAAR
Sbjct: 1 MNKSELVEKIAE-GADISKASAGRALDSLIGSVTTELANGGDVALVGFGTYKVNDRAART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P I + VP F+AGK LK+ +N
Sbjct: 60 GRNPQTGAEIQISAAKVPAFKAGKALKDAVN 90
>gi|301066428|ref|YP_003788451.1| nucleoid DNA-binding protein [Lactobacillus casei str. Zhang]
gi|300438835|gb|ADK18601.1| nucleoid DNA-binding protein [Lactobacillus casei str. Zhang]
gi|327382402|gb|AEA53878.1| DNA-binding protein HU-beta-like protein [Lactobacillus casei
LC2W]
gi|327385603|gb|AEA57077.1| DNA-binding protein HU-beta-like protein [Lactobacillus casei
BD-II]
Length = 93
Score = 100 bits (250), Expect = 6e-20, Method: Composition-based stats.
Identities = 30/90 (33%), Positives = 48/90 (53%), Gaps = 1/90 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ LI ++A L +D V+ + + +L+ G +V++ GFG+F VR+RAAR
Sbjct: 5 NKAELIESVATAT-GLTKKDATAAVDAVFGSIQDSLSKGDKVQLIGFGNFEVRERAARKG 63
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P I + VP F+ GK LK+ +
Sbjct: 64 RNPQTGAEIKIPASKVPAFKPGKALKDAVK 93
>gi|228988924|ref|ZP_04148973.1| DNA-binding protein HU [Bacillus thuringiensis serovar
tochigiensis BGSC 4Y1]
gi|228770838|gb|EEM19354.1| DNA-binding protein HU [Bacillus thuringiensis serovar
tochigiensis BGSC 4Y1]
Length = 90
Score = 100 bits (250), Expect = 6e-20, Method: Composition-based stats.
Identities = 34/91 (37%), Positives = 53/91 (58%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI +A+ +L +D +L+ +T+AL NG +V++ GFG+F VR+RAAR
Sbjct: 1 MNKTELIKQVAENT-ELTQKDASAATQAVLDTITEALMNGEKVQLIGFGTFEVRERAART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + + + VP F+AGK LK +
Sbjct: 60 GRNPQTGEEMQIAASKVPAFKAGKELKAAVK 90
>gi|257867662|ref|ZP_05647315.1| DNA binding protein HU [Enterococcus casseliflavus EC30]
gi|257869557|ref|ZP_05649210.1| DNA binding protein HU [Enterococcus gallinarum EG2]
gi|257873990|ref|ZP_05653643.1| DNA binding protein HU [Enterococcus casseliflavus EC10]
gi|257876569|ref|ZP_05656222.1| DNA binding protein HU [Enterococcus casseliflavus EC20]
gi|257801745|gb|EEV30648.1| DNA binding protein HU [Enterococcus casseliflavus EC30]
gi|257803721|gb|EEV32543.1| DNA binding protein HU [Enterococcus gallinarum EG2]
gi|257808154|gb|EEV36976.1| DNA binding protein HU [Enterococcus casseliflavus EC10]
gi|257810735|gb|EEV39555.1| DNA binding protein HU [Enterococcus casseliflavus EC20]
Length = 91
Score = 100 bits (250), Expect = 6e-20, Method: Composition-based stats.
Identities = 32/90 (35%), Positives = 47/90 (52%), Gaps = 1/90 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ LI +A L +D V+ + + ALANG +V++ GFG+F VR RA R
Sbjct: 3 NKAELIEKVAAAT-DLTKKDATAAVDAVFSTIQDALANGEKVQLIGFGNFEVRSRAERKG 61
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + I + VP F+ GK LK+ +
Sbjct: 62 RNPQTGEEIKIPASKVPAFKPGKALKDAVK 91
>gi|308050305|ref|YP_003913871.1| histone family protein DNA-binding protein [Ferrimonas balearica
DSM 9799]
gi|307632495|gb|ADN76797.1| histone family protein DNA-binding protein [Ferrimonas balearica
DSM 9799]
Length = 90
Score = 100 bits (250), Expect = 6e-20, Method: Composition-based stats.
Identities = 31/91 (34%), Positives = 51/91 (56%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI IA ++ + ++ ++ +T +L +G ++ + GFG+F VR+RA R
Sbjct: 1 MNKSQLIDQIA-SGADISKAAAGRALDSFIDAITASLKDGEKISLVGFGTFEVRERAERT 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P K I + +P F+AGK LK+ +N
Sbjct: 60 GRNPQTGKEIKIAAAKIPAFKAGKALKDAVN 90
>gi|170745590|ref|YP_001776812.1| histone family protein DNA-binding protein [Methylobacterium
radiotolerans JCM 2831]
gi|170752147|ref|YP_001783293.1| histone family protein DNA-binding protein [Methylobacterium
radiotolerans JCM 2831]
gi|170659244|gb|ACB28296.1| histone family protein DNA-binding protein [Methylobacterium
radiotolerans JCM 2831]
gi|170659274|gb|ACB28325.1| histone family protein DNA-binding protein [Methylobacterium
radiotolerans JCM 2831]
Length = 108
Score = 100 bits (250), Expect = 6e-20, Method: Composition-based stats.
Identities = 42/93 (45%), Positives = 59/93 (63%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
MI+S L+ IA KNP L +DVE IV +L+ MT AL G R+E+R FG+F+VR AR+
Sbjct: 1 MIRSELVARIAAKNPHLYARDVEAIVATILKTMTTALVRGDRIELREFGTFTVRHHRARI 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSP 93
AR P +Q V++V K F+ K ++E L +
Sbjct: 61 ARNPRSQAVVTVPAKGRVAFKPSKAMRELLQAK 93
>gi|167897237|ref|ZP_02484639.1| putative bacterial nucleoid DNA-binding protein [Burkholderia
pseudomallei 7894]
Length = 90
Score = 100 bits (250), Expect = 6e-20, Method: Composition-based stats.
Identities = 31/91 (34%), Positives = 46/91 (50%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI +A K+ +L + V+ +L+ + L G V + GFG+F + RAAR
Sbjct: 1 MNKSQLIDAVA-KHAELTKAQAAQSVDAVLDAIRTGLLEDGDVALSGFGTFGISARAART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + I + F+ GK LK+ LN
Sbjct: 60 GRNPATGEAIEIAASKAVKFKPGKALKDALN 90
>gi|27363508|ref|NP_759036.1| DNA-binding protein HU-beta [Vibrio vulnificus CMCP6]
gi|37679291|ref|NP_933900.1| nucleoid DNA-binding protein [Vibrio vulnificus YJ016]
gi|27359624|gb|AAO08563.1| DNA-binding protein HU-beta [Vibrio vulnificus CMCP6]
gi|37198034|dbj|BAC93871.1| bacterial nucleoid DNA-binding protein [Vibrio vulnificus YJ016]
Length = 97
Score = 100 bits (250), Expect = 6e-20, Method: Composition-based stats.
Identities = 33/90 (36%), Positives = 52/90 (57%), Gaps = 1/90 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ L+ +IA N ++ + ++ +E ++ L +G +V + GFG+FSVR RAAR
Sbjct: 9 NKTQLVESIAA-NADISKASAGRALDAFIEAVSGTLQSGDQVALVGFGTFSVRTRAARTG 67
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + I + E VP F+AGK LK+ N
Sbjct: 68 RNPKTGEEIQIAEAKVPSFKAGKALKDACN 97
>gi|330721962|gb|EGG99900.1| DNA-binding protein HU-beta [gamma proteobacterium IMCC2047]
Length = 90
Score = 100 bits (250), Expect = 6e-20, Method: Composition-based stats.
Identities = 33/91 (36%), Positives = 52/91 (57%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI IA + ++ + ++ ++ +T L GG+V + GFG+FSV+ RAAR
Sbjct: 1 MNKSELIDAIAAE-ADISKASAGRALDAAVDAVTNELKKGGQVSLVGFGTFSVKDRAART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + I ++ +P F+AGK LK+ N
Sbjct: 60 GRNPQTGETIQIKAAKIPSFKAGKALKDACN 90
>gi|144899463|emb|CAM76327.1| Bacterial nucleoid DNA-binding protein [Magnetospirillum
gryphiswaldense MSR-1]
Length = 90
Score = 100 bits (250), Expect = 6e-20, Method: Composition-based stats.
Identities = 31/90 (34%), Positives = 50/90 (55%), Gaps = 1/90 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ L+ +A + L+ D K V+ + + ++ ALA G V + GFG+F+V +RAA
Sbjct: 1 MNKNDLVTAVAA-SAGLSKADAAKAVDGVFDAISGALAGGDDVRLVGFGTFAVSERAASE 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P + I + P F+AGK LK+ +
Sbjct: 60 GRNPRTGETIKIPASKQPKFKAGKGLKDSV 89
>gi|320540340|ref|ZP_08039992.1| putative HU, DNA-binding transcriptional regulator, beta subunit
[Serratia symbiotica str. Tucson]
gi|320029660|gb|EFW11687.1| putative HU, DNA-binding transcriptional regulator, beta subunit
[Serratia symbiotica str. Tucson]
Length = 90
Score = 100 bits (250), Expect = 6e-20, Method: Composition-based stats.
Identities = 33/91 (36%), Positives = 51/91 (56%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI IA ++ + ++ ++ +T +L G V + GFG+F+VR+R+AR
Sbjct: 1 MNKSQLIDKIAT-GADISKAVAGRALDAVIVSVTDSLKAGDDVALVGFGTFTVRERSART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P K I++ VP FRA K LK+ +N
Sbjct: 60 GRNPQTGKEITIAAAKVPAFRAAKALKDAVN 90
>gi|319892463|ref|YP_004149338.1| DNA-binding protein HBsu [Staphylococcus pseudintermedius
HKU10-03]
gi|317162159|gb|ADV05702.1| DNA-binding protein HBsu [Staphylococcus pseudintermedius
HKU10-03]
gi|323464434|gb|ADX76587.1| DNA-binding protein HU [Staphylococcus pseudintermedius ED99]
Length = 90
Score = 100 bits (250), Expect = 6e-20, Method: Composition-based stats.
Identities = 34/91 (37%), Positives = 53/91 (58%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI +A++ L ++ V+ + E + +LA G +V++ GFG+F VR+RAAR
Sbjct: 1 MNKTDLINAVAEQ-ADLTKKEAGLAVDAVFEAIQTSLAKGEKVQLIGFGNFEVRERAARK 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P K I + VP F+AGK LK+ +
Sbjct: 60 GRNPQTGKEIDIPASKVPAFKAGKALKDAVK 90
>gi|304321951|ref|YP_003855594.1| Bacterial nucleoid DNA-binding protein HU-beta [Parvularcula
bermudensis HTCC2503]
gi|303300853|gb|ADM10452.1| Bacterial nucleoid DNA-binding protein HU-beta [Parvularcula
bermudensis HTCC2503]
Length = 90
Score = 100 bits (250), Expect = 6e-20, Method: Composition-based stats.
Identities = 32/91 (35%), Positives = 48/91 (52%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ + +A + D + V+ + + +T+AL NG V I GFG+FS +R AR
Sbjct: 1 MNKNEFVDRVAA-IADITKADAGRTVDAVFDAITEALKNGDDVRIVGFGTFSSSRRPARE 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + I ++ P F AGK LK+ LN
Sbjct: 60 GRNPRTGETIQIKASNQPKFSAGKGLKDALN 90
>gi|269467813|gb|EEZ79565.1| histone family protein [uncultured SUP05 cluster bacterium]
Length = 90
Score = 100 bits (250), Expect = 6e-20, Method: Composition-based stats.
Identities = 38/91 (41%), Positives = 48/91 (52%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI IA L+ D + +N +T AL+ G V+I GFGSF VR RAAR
Sbjct: 1 MNKSELIDAIASA-ANLSKADAGRALNATTGAITSALSGGDGVQITGFGSFVVRARAART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P I ++ F+AGK LKE +N
Sbjct: 60 GRNPQTGATIQIKASKNAAFKAGKALKEAVN 90
>gi|116494867|ref|YP_806601.1| nucleoid DNA-binding protein [Lactobacillus casei ATCC 334]
gi|191638374|ref|YP_001987540.1| Histone-like DNA-binding protein HU [Lactobacillus casei BL23]
gi|239631540|ref|ZP_04674571.1| bacterial nucleoid protein Hbs [Lactobacillus paracasei subsp.
paracasei 8700:2]
gi|116105017|gb|ABJ70159.1| bacterial nucleoid protein Hbs [Lactobacillus casei ATCC 334]
gi|190712676|emb|CAQ66682.1| Histone-like DNA-binding protein HU [Lactobacillus casei BL23]
gi|239526005|gb|EEQ65006.1| bacterial nucleoid protein Hbs [Lactobacillus paracasei subsp.
paracasei 8700:2]
Length = 91
Score = 100 bits (250), Expect = 6e-20, Method: Composition-based stats.
Identities = 30/90 (33%), Positives = 48/90 (53%), Gaps = 1/90 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ LI ++A L +D V+ + + +L+ G +V++ GFG+F VR+RAAR
Sbjct: 3 NKAELIESVATAT-GLTKKDATAAVDAVFGSIQDSLSKGDKVQLIGFGNFEVRERAARKG 61
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P I + VP F+ GK LK+ +
Sbjct: 62 RNPQTGAEIKIPASKVPAFKPGKALKDAVK 91
>gi|226944450|ref|YP_002799523.1| histone-like DNA-binding protein [Azotobacter vinelandii DJ]
gi|226719377|gb|ACO78548.1| histone-like bacterial DNA-binding protein [Azotobacter
vinelandii DJ]
Length = 90
Score = 100 bits (250), Expect = 6e-20, Method: Composition-based stats.
Identities = 35/91 (38%), Positives = 54/91 (59%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI IA + + + ++ ++E +T AL G V + GFG+F+V++RAAR
Sbjct: 1 MNKSELIDAIAA-SADIPKAVAGRALDAVIESVTGALKAGDSVVLVGFGTFAVKERAART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P K I++E +P F+AGK LK+ +N
Sbjct: 60 GRNPQTGKPINIEAAKIPGFKAGKALKDAVN 90
>gi|70726439|ref|YP_253353.1| DNA-binding protein II [Staphylococcus haemolyticus JCSC1435]
gi|68447163|dbj|BAE04747.1| DNA-binding protein II [Staphylococcus haemolyticus JCSC1435]
Length = 90
Score = 100 bits (250), Expect = 6e-20, Method: Composition-based stats.
Identities = 34/91 (37%), Positives = 54/91 (59%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI +A++ L ++ V+ + E + Q+L+ G +V++ GFG+F VR+RAAR
Sbjct: 1 MNKTDLINAVAEQ-ADLTKKEAGSAVDAVFESIQQSLSKGEKVQLIGFGNFEVRERAARK 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P K I + VP F+AGK LK+ +
Sbjct: 60 GRNPQTGKEIEIPASKVPAFKAGKALKDAVK 90
>gi|146296415|ref|YP_001180186.1| histone family protein DNA-binding protein [Caldicellulosiruptor
saccharolyticus DSM 8903]
gi|145409991|gb|ABP66995.1| bacterial nucleoid protein Hbs [Caldicellulosiruptor
saccharolyticus DSM 8903]
Length = 95
Score = 100 bits (250), Expect = 6e-20, Method: Composition-based stats.
Identities = 39/96 (40%), Positives = 63/96 (65%), Gaps = 1/96 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K L+ +IA+K+ L +D E+ +N+LLE + +AL+ G +V++ GFG+F V++RA R
Sbjct: 1 MSKEELVKSIAEKS-GLTKKDSERALNVLLECIQEALSKGDKVQLVGFGTFEVKERAERK 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDST 96
R P + I + +VP F+AGK LKE ++SP +
Sbjct: 60 GRNPQTGEEILIPATVVPIFKAGKGLKEAVSSPAKS 95
>gi|332524208|ref|ZP_08400434.1| nucleoid protein Hbs [Rubrivivax benzoatilyticus JA2]
gi|332107543|gb|EGJ08767.1| nucleoid protein Hbs [Rubrivivax benzoatilyticus JA2]
Length = 90
Score = 100 bits (250), Expect = 6e-20, Method: Composition-based stats.
Identities = 37/90 (41%), Positives = 49/90 (54%), Gaps = 1/90 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI IA++ L+ + + LE + AL NG V I GFG+F V +RAAR
Sbjct: 1 MNKTDLIAHIAQQ-ADLSKASATRALEAALEGVQTALKNGDSVAIAGFGTFEVSERAART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P + I V+ VP FR GK LK+ L
Sbjct: 60 GRNPRTGEAIEVKAAKVPKFRPGKALKDLL 89
>gi|255065928|ref|ZP_05317783.1| DNA-binding protein HU-beta [Neisseria sicca ATCC 29256]
gi|261364607|ref|ZP_05977490.1| DNA-binding protein HU-beta [Neisseria mucosa ATCC 25996]
gi|261378756|ref|ZP_05983329.1| DNA-binding protein HU-beta [Neisseria cinerea ATCC 14685]
gi|255049839|gb|EET45303.1| DNA-binding protein HU-beta [Neisseria sicca ATCC 29256]
gi|269144911|gb|EEZ71329.1| DNA-binding protein HU-beta [Neisseria cinerea ATCC 14685]
gi|288567196|gb|EFC88756.1| DNA-binding protein HU-beta [Neisseria mucosa ATCC 25996]
Length = 89
Score = 100 bits (250), Expect = 6e-20, Method: Composition-based stats.
Identities = 32/90 (35%), Positives = 48/90 (53%), Gaps = 1/90 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI IA++ ++ +K ++ +T AL G V + GFG+F V +RA R
Sbjct: 1 MNKSELIEAIAQE-AGISKAAAQKALDATTNAVTNALKKGDTVTLVGFGTFYVGERAERQ 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P + +++ P FRAGK LK+ L
Sbjct: 60 GRNPKTGEPLTIAAAKTPKFRAGKALKDAL 89
>gi|146282421|ref|YP_001172574.1| DNA-binding protein HU [Pseudomonas stutzeri A1501]
gi|145570626|gb|ABP79732.1| DNA-binding protein HU [Pseudomonas stutzeri A1501]
gi|327480676|gb|AEA83986.1| DNA-binding protein HU [Pseudomonas stutzeri DSM 4166]
Length = 90
Score = 100 bits (250), Expect = 6e-20, Method: Composition-based stats.
Identities = 34/91 (37%), Positives = 53/91 (58%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI IA + + + ++ ++E +T AL G V + GFG+F+V++RAAR
Sbjct: 1 MNKSELIDAIAA-SADIPKAVAGRALDAVIESVTGALKAGDSVVLVGFGTFAVKERAART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P K I++ +P F+AGK LK+ +N
Sbjct: 60 GRNPQTGKPINIAAAKIPGFKAGKALKDAVN 90
>gi|261855011|ref|YP_003262294.1| histone family protein DNA-binding protein [Halothiobacillus
neapolitanus c2]
gi|261835480|gb|ACX95247.1| histone family protein DNA-binding protein [Halothiobacillus
neapolitanus c2]
Length = 90
Score = 100 bits (250), Expect = 6e-20, Method: Composition-based stats.
Identities = 32/91 (35%), Positives = 51/91 (56%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI +A K+ + + ++ +E + AL G +V + GFG+F VR+R AR
Sbjct: 1 MNKSELIDAMAAKS-GMKKTESAAALDAFIEAVGDALKKGDQVTLVGFGTFLVREREART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + + I + +P F+AGK LK+ +N
Sbjct: 60 GRNPRSGETIEIAASRLPSFKAGKGLKDAVN 90
>gi|308069517|ref|YP_003871122.1| DNA-binding protein HU 1 (DNA-binding protein II) [Paenibacillus
polymyxa E681]
gi|305858796|gb|ADM70584.1| DNA-binding protein HU 1 (DNA-binding protein II) [Paenibacillus
polymyxa E681]
Length = 90
Score = 100 bits (250), Expect = 6e-20, Method: Composition-based stats.
Identities = 31/91 (34%), Positives = 56/91 (61%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI +++ +L+ +DV K ++ + E ++ AL +G +V++ GFG+F VR+R+AR
Sbjct: 1 MNKTDLINQVSEST-ELSKKDVTKAIDAVFEAISGALQSGDKVQLVGFGNFEVRERSARK 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + I + +P F+ GK LK+ +
Sbjct: 60 GRNPQTGEEIEIPASKIPAFKPGKALKDGIK 90
>gi|258405990|ref|YP_003198732.1| histone family protein DNA-binding protein [Desulfohalobium
retbaense DSM 5692]
gi|257798217|gb|ACV69154.1| histone family protein DNA-binding protein [Desulfohalobium
retbaense DSM 5692]
Length = 91
Score = 100 bits (250), Expect = 6e-20, Method: Composition-based stats.
Identities = 38/92 (41%), Positives = 53/92 (57%), Gaps = 1/92 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS L+ +A + L ++ + +VN + + AL G RVEIRGFGSF ++
Sbjct: 1 MNKSELVKALADAH-NLTQEEAKDMVNTFFDSIKDALEQGDRVEIRGFGSFKIKHYEGYK 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P +V+ V+ K +PFFRAGK LKE LN
Sbjct: 60 GRNPKTGEVVDVQPKRLPFFRAGKGLKEHLNK 91
>gi|255067152|ref|ZP_05319007.1| integration host factor, beta subunit [Neisseria sicca ATCC
29256]
gi|261365784|ref|ZP_05978667.1| integration host factor, beta subunit [Neisseria mucosa ATCC
25996]
gi|255048520|gb|EET43984.1| integration host factor, beta subunit [Neisseria sicca ATCC
29256]
gi|288565692|gb|EFC87252.1| integration host factor, beta subunit [Neisseria mucosa ATCC
25996]
Length = 104
Score = 100 bits (250), Expect = 6e-20, Method: Composition-based stats.
Identities = 43/96 (44%), Positives = 59/96 (61%), Gaps = 5/96 (5%)
Query: 1 MIKSSL----IGTIAKKNPK-LNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRK 55
M KS L A+KN L +DVE V +L++ MT++LA G R+EIRGFGSF +
Sbjct: 1 MTKSELMVRLAEVFAEKNGNQLLAKDVEYSVKVLVDTMTRSLARGQRIEIRGFGSFDLNH 60
Query: 56 RAARLARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R AR+ R P + + V EK VP F+ GK L+ER++
Sbjct: 61 RPARIGRNPKTGERVEVPEKHVPHFKPGKELRERVD 96
>gi|261403920|ref|YP_003240161.1| histone family protein DNA-binding protein [Paenibacillus sp.
Y412MC10]
gi|329925507|ref|ZP_08280381.1| DNA-binding protein HU-alpha [Paenibacillus sp. HGF5]
gi|261280383|gb|ACX62354.1| histone family protein DNA-binding protein [Paenibacillus sp.
Y412MC10]
gi|328939790|gb|EGG36130.1| DNA-binding protein HU-alpha [Paenibacillus sp. HGF5]
Length = 90
Score = 100 bits (250), Expect = 7e-20, Method: Composition-based stats.
Identities = 41/91 (45%), Positives = 56/91 (61%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI I+ K+ L +DVE ++N L E+T+ALANG +V++ GFG+F RKRA R
Sbjct: 1 MNKTDLINNISGKS-GLTKKDVENVLNGFLGEITEALANGDKVQLIGFGTFETRKRAGRT 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P I + E VP F+AG LKE +
Sbjct: 60 GRNPQTGNTIEIPESNVPAFKAGNKLKEAVK 90
>gi|260550113|ref|ZP_05824327.1| nucleoid DNA-binding protein [Acinetobacter sp. RUH2624]
gi|260406868|gb|EEX00347.1| nucleoid DNA-binding protein [Acinetobacter sp. RUH2624]
Length = 100
Score = 100 bits (250), Expect = 7e-20, Method: Composition-based stats.
Identities = 39/94 (41%), Positives = 56/94 (59%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
KS LI IA KNP L VE+ V +++++M +AL+ R+EIRGFGSF++ R R+
Sbjct: 7 NKSDLIERIALKNPHLAEPLVEEAVKIMIDQMIEALSTDNRIEIRGFGSFALHHREPRVG 66
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDS 95
R P K + V K VP F+ GK L++ +N
Sbjct: 67 RNPKTGKSVDVAAKAVPHFKPGKALRDAVNESGK 100
>gi|323340746|ref|ZP_08080998.1| DNA-binding protein HU [Lactobacillus ruminis ATCC 25644]
gi|323091869|gb|EFZ34489.1| DNA-binding protein HU [Lactobacillus ruminis ATCC 25644]
Length = 91
Score = 100 bits (250), Expect = 7e-20, Method: Composition-based stats.
Identities = 32/90 (35%), Positives = 48/90 (53%), Gaps = 1/90 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ LI T+A+K L +D V+ + + L G +V++ GFG+F VR+RAAR
Sbjct: 3 NKAQLIETVAEKT-GLTKKDATVAVDAVFGSIQDFLEKGDKVQLIGFGNFEVRERAARKG 61
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P I + VP F+ GK LK+ +
Sbjct: 62 RNPQTGAEIEIPASKVPAFKPGKALKDAVK 91
>gi|332535436|ref|ZP_08411223.1| DNA-binding protein HU-beta [Pseudoalteromonas haloplanktis
ANT/505]
gi|332035160|gb|EGI71672.1| DNA-binding protein HU-beta [Pseudoalteromonas haloplanktis
ANT/505]
Length = 91
Score = 100 bits (250), Expect = 7e-20, Method: Composition-based stats.
Identities = 30/91 (32%), Positives = 51/91 (56%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ L+ IA + +++ + ++ +T +L G V + GFG+FSV++RAAR
Sbjct: 1 MNKAQLVEKIAT-DAEISKAAATRALDAFTGAVTSSLKEGDSVALVGFGTFSVKERAART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P I + +P F+AGK LK+++N
Sbjct: 60 GRNPQTGAEIQIAAATIPSFKAGKGLKDQVN 90
>gi|227510316|ref|ZP_03940365.1| DNA-binding protein HU [Lactobacillus brevis subsp. gravesensis
ATCC 27305]
gi|227513323|ref|ZP_03943372.1| DNA-binding protein HU [Lactobacillus buchneri ATCC 11577]
gi|227524467|ref|ZP_03954516.1| DNA-binding protein HU [Lactobacillus hilgardii ATCC 8290]
gi|227083196|gb|EEI18508.1| DNA-binding protein HU [Lactobacillus buchneri ATCC 11577]
gi|227088337|gb|EEI23649.1| DNA-binding protein HU [Lactobacillus hilgardii ATCC 8290]
gi|227189968|gb|EEI70035.1| DNA-binding protein HU [Lactobacillus brevis subsp. gravesensis
ATCC 27305]
Length = 91
Score = 100 bits (250), Expect = 7e-20, Method: Composition-based stats.
Identities = 30/90 (33%), Positives = 50/90 (55%), Gaps = 1/90 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ L+ +A + L +D V+ + + + +LA G +V++ GFG+F VR+RAAR
Sbjct: 3 NKAELVTNVATET-GLTKKDATAAVDAVFDSIQASLAKGEKVQLIGFGNFEVRQRAARKG 61
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + I + VP F+ GK LK+ +
Sbjct: 62 RNPQTGQEIQIPASKVPAFKPGKALKDAVK 91
>gi|221642274|ref|YP_002533361.1| small DNA-binding protein (bacterial histone-like family)
[Bacillus cereus Q1]
gi|228962916|ref|ZP_04124153.1| DNA-binding protein HU [Bacillus thuringiensis serovar pakistani
str. T13001]
gi|221243209|gb|ACM15918.1| small DNA-binding protein (bacterial histone-like family)
[Bacillus cereus Q1]
gi|228796774|gb|EEM44147.1| DNA-binding protein HU [Bacillus thuringiensis serovar pakistani
str. T13001]
Length = 92
Score = 100 bits (250), Expect = 7e-20, Method: Composition-based stats.
Identities = 35/93 (37%), Positives = 53/93 (56%), Gaps = 1/93 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI +A ++ +L V+ +LE + AL NG V++ GFG+F VR+RAAR
Sbjct: 1 MNKSELIKQVAIQS-ELTKPQASLAVDAVLESIQHALQNGEHVQLLGFGTFEVRERAARE 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSP 93
R P + +++ P F+AGK LKE + +
Sbjct: 60 GRNPHTGEALTIPAGKTPAFKAGKALKEAVKAK 92
>gi|329120384|ref|ZP_08249051.1| integration host factor beta subunit [Neisseria bacilliformis
ATCC BAA-1200]
gi|327462339|gb|EGF08665.1| integration host factor beta subunit [Neisseria bacilliformis
ATCC BAA-1200]
Length = 102
Score = 100 bits (250), Expect = 7e-20, Method: Composition-based stats.
Identities = 41/98 (41%), Positives = 56/98 (57%), Gaps = 6/98 (6%)
Query: 1 MIKSSLIGTIAKKNPK------LNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVR 54
M KS L+ +A L +DVE V +L++ MT++LA G R+EIRGFGSF +
Sbjct: 1 MTKSELMARLADVFADKHPLSPLMSKDVEYSVKILVDTMTRSLARGQRIEIRGFGSFDLN 60
Query: 55 KRAARLARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R AR R P + V EK VP F+ GK L+ER++
Sbjct: 61 HRPARQGRNPKTGDKVDVPEKHVPHFKPGKELRERVDQ 98
>gi|77362371|ref|YP_341945.1| DNA-binding protein HU-beta (NS1) (HU-1) [Pseudoalteromonas
haloplanktis TAC125]
gi|76877282|emb|CAI89499.1| DNA-binding protein HU-beta (NS1) (HU-1) [Pseudoalteromonas
haloplanktis TAC125]
Length = 91
Score = 100 bits (250), Expect = 7e-20, Method: Composition-based stats.
Identities = 30/91 (32%), Positives = 51/91 (56%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ L+ IA + +++ + ++ +T +L G V + GFG+FSV++RAAR
Sbjct: 1 MNKAQLVEKIAT-DAEISKAAATRALDAFTGAVTSSLKEGDSVALVGFGTFSVKERAART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P I + +P F+AGK LK+++N
Sbjct: 60 GRNPQTGAEIQIAAATIPSFKAGKGLKDQVN 90
>gi|91793844|ref|YP_563495.1| histone-like DNA-binding protein [Shewanella denitrificans OS217]
gi|91715846|gb|ABE55772.1| histone-like DNA-binding protein [Shewanella denitrificans OS217]
Length = 90
Score = 100 bits (250), Expect = 7e-20, Method: Composition-based stats.
Identities = 31/91 (34%), Positives = 51/91 (56%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI IA ++ + ++ + +T+ L +G ++ + GFG+F VR+RA R
Sbjct: 1 MNKSELIEKIA-SGADISKAAAGRALDSFIAAVTEGLKDGDKISLVGFGTFEVRQRAERT 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P K I + +P F+AGK+LK+ +N
Sbjct: 60 GRNPQTGKEIKIAAANIPAFKAGKSLKDAVN 90
>gi|209696250|ref|YP_002264180.1| DNA-binding protein HU-alpha [Aliivibrio salmonicida LFI1238]
gi|208010203|emb|CAQ80530.1| DNA-binding protein HU-alpha [Aliivibrio salmonicida LFI1238]
Length = 90
Score = 100 bits (250), Expect = 7e-20, Method: Composition-based stats.
Identities = 37/91 (40%), Positives = 52/91 (57%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI IA+K L+ + + LE +T AL +G +V++ GFG+F V RAAR
Sbjct: 1 MNKTQLIDAIAEK-ADLSKAQAKAALEATLEGVTGALKDGDQVQLIGFGTFKVNHRAART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + I ++ VP F AGK LKE +N
Sbjct: 60 GRNPKTGEEIQIKAANVPAFVAGKALKESVN 90
>gi|262197073|ref|YP_003268282.1| histone family protein DNA-binding protein [Haliangium ochraceum
DSM 14365]
gi|262080420|gb|ACY16389.1| histone family protein DNA-binding protein [Haliangium ochraceum
DSM 14365]
Length = 106
Score = 100 bits (249), Expect = 7e-20, Method: Composition-based stats.
Identities = 38/91 (41%), Positives = 55/91 (60%), Gaps = 1/91 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
KS LI ++ KL E +V+++ E M +AL +G R+EIRGFGSF VR A
Sbjct: 4 TKSDLIEQLSSA-AKLPKAKAELVVSVMFECMAEALQHGERIEIRGFGSFEVRDYKAYEG 62
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P + + V+ K +PFF+ GK L+ER+N+
Sbjct: 63 RNPRTGEPVQVDAKRLPFFKIGKELRERINN 93
>gi|15837792|ref|NP_298480.1| histone-like protein [Xylella fastidiosa 9a5c]
gi|14194631|sp|Q9PE38|DBH_XYLFA RecName: Full=DNA-binding protein HU
gi|9106160|gb|AAF84000.1|AE003953_4 histone-like protein [Xylella fastidiosa 9a5c]
Length = 94
Score = 100 bits (249), Expect = 7e-20, Method: Composition-based stats.
Identities = 30/91 (32%), Positives = 50/91 (54%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI +A L+ + + ++ ++ E+T+AL G V + GFG+F VR RA R
Sbjct: 1 MNKTELIDGVAAA-ANLSKVEAGRAIDAVVNEITEALKKGDSVTLVGFGTFQVRPRAERP 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + ++I + P F+ GK LK+ +
Sbjct: 60 GRNPKSGELIMIAASNNPSFKPGKALKDAVK 90
>gi|312621747|ref|YP_004023360.1| histone family protein DNA-binding protein [Caldicellulosiruptor
kronotskyensis 2002]
gi|312202214|gb|ADQ45541.1| histone family protein DNA-binding protein [Caldicellulosiruptor
kronotskyensis 2002]
Length = 95
Score = 100 bits (249), Expect = 7e-20, Method: Composition-based stats.
Identities = 40/96 (41%), Positives = 62/96 (64%), Gaps = 1/96 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K LI +IA+K+ L +D EK +N+LLE + +AL+ G +V++ GFG+F V++RA R
Sbjct: 1 MSKEELIKSIAEKS-GLTKKDSEKALNVLLECIQEALSKGDKVQLVGFGTFEVKERAERK 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDST 96
R P + I + +VP F+AGK LKE ++ P +
Sbjct: 60 GRNPQTGEEILIPATVVPVFKAGKVLKEAVSGPSKS 95
>gi|239906700|ref|YP_002953441.1| HU_IHF family transcriptional regulator [Desulfovibrio magneticus
RS-1]
gi|239796566|dbj|BAH75555.1| HU_IHF family transcriptional regulator [Desulfovibrio magneticus
RS-1]
Length = 90
Score = 100 bits (249), Expect = 7e-20, Method: Composition-based stats.
Identities = 31/90 (34%), Positives = 49/90 (54%), Gaps = 1/90 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ L+G IA+K L + E+ +N +E + + L G++ + GFG+F V +R AR
Sbjct: 1 MTKADLVGKIAEKT-GLTKANAERALNAFIEAIEETLVGEGKITLTGFGTFMVDERKART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P I++ V FR GK LK+ +
Sbjct: 60 GRNPRTGAEINIPASKVVKFRPGKLLKDAI 89
>gi|114707247|ref|ZP_01440145.1| histone-like protein [Fulvimarina pelagi HTCC2506]
gi|114537443|gb|EAU40569.1| histone-like protein [Fulvimarina pelagi HTCC2506]
Length = 91
Score = 100 bits (249), Expect = 7e-20, Method: Composition-based stats.
Identities = 28/92 (30%), Positives = 48/92 (52%), Gaps = 1/92 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ L+ +++K L+ Q V+ + + + LA+GG + + GFG+F+V R A
Sbjct: 1 MNKNELVSAVSEK-ADLSKQQATAAVDAVFGTIEKTLADGGDIRLVGFGTFAVTHRNASK 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P + + + VP F GK LK+ +N
Sbjct: 60 GRNPSTGAEVDIPARNVPKFTPGKGLKDSVNK 91
>gi|323144308|ref|ZP_08078923.1| integration host factor subunit beta [Succinatimonas hippei YIT
12066]
gi|322415899|gb|EFY06618.1| integration host factor subunit beta [Succinatimonas hippei YIT
12066]
Length = 92
Score = 100 bits (249), Expect = 8e-20, Method: Composition-based stats.
Identities = 31/92 (33%), Positives = 52/92 (56%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M ++ LI ++ + + ++K V + E+M + L+ G R+EIRGFGSF VR R R+
Sbjct: 1 MTRADLINSLIARYRDIPPSQIDKSVREIFEQMIETLSQGERIEIRGFGSFEVRLREPRI 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
A P + + + + V F+ G L+ R+NS
Sbjct: 61 AHNPKTGERVDLPARKVVHFKPGVELRNRVNS 92
>gi|81428626|ref|YP_395626.1| histone-like DNA-binding protein HU [Lactobacillus sakei subsp.
sakei 23K]
gi|78610268|emb|CAI55317.1| Histone-like DNA-binding protein HU [Lactobacillus sakei subsp.
sakei 23K]
Length = 91
Score = 100 bits (249), Expect = 8e-20, Method: Composition-based stats.
Identities = 31/90 (34%), Positives = 46/90 (51%), Gaps = 1/90 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ LI +A K L +D V+ + + L G +V++ GFG+F VR+RAAR
Sbjct: 3 NKAQLIENVASKT-GLTKKDATAAVDAVFGSIQDTLKQGDKVQLIGFGTFEVRERAARKG 61
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P I + VP F+ GK LK+ +
Sbjct: 62 RNPQTGAEIKIPASKVPAFKPGKALKDSVK 91
>gi|257091641|ref|YP_003165284.1| hypothetical protein CAP2UW1_4713 [Candidatus Accumulibacter
phosphatis clade IIA str. UW-1]
gi|257048650|gb|ACV37837.1| hypothetical protein CAP2UW1_4713 [Candidatus Accumulibacter
phosphatis clade IIA str. UW-1]
Length = 103
Score = 100 bits (249), Expect = 8e-20, Method: Composition-based stats.
Identities = 40/90 (44%), Positives = 56/90 (62%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M +S LI +A + P L +D E V +L+ + ALA G RVEIRGFGSF + R AR
Sbjct: 1 MTRSDLITVLASRFPSLVAKDAEIAVKEILDAIGIALAQGDRVEIRGFGSFRLNYRPART 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P + + ++V EK VP F+A K ++ER+
Sbjct: 61 GRNPKSGEPVAVAEKYVPHFQASKEMRERV 90
>gi|15924463|ref|NP_371997.1| DNA-binding protein II [Staphylococcus aureus subsp. aureus Mu50]
gi|15927054|ref|NP_374587.1| DNA-binding protein II [Staphylococcus aureus subsp. aureus N315]
gi|21283091|ref|NP_646179.1| DNA-binding protein II [Staphylococcus aureus subsp. aureus MW2]
gi|27468078|ref|NP_764715.1| DNA-binding protein II [Staphylococcus epidermidis ATCC 12228]
gi|49483660|ref|YP_040884.1| DNA-binding protein HU [Staphylococcus aureus subsp. aureus
MRSA252]
gi|49486312|ref|YP_043533.1| DNA-binding protein HU [Staphylococcus aureus subsp. aureus
MSSA476]
gi|57650428|ref|YP_186357.1| DNA-binding protein HU [Staphylococcus aureus subsp. aureus COL]
gi|57866986|ref|YP_188618.1| DNA-binding protein HU [Staphylococcus epidermidis RP62A]
gi|82751070|ref|YP_416811.1| DNA-binding protein II [Staphylococcus aureus RF122]
gi|87160505|ref|YP_494059.1| DNA-binding protein HU [Staphylococcus aureus subsp. aureus
USA300_FPR3757]
gi|88195207|ref|YP_500008.1| DNA-binding protein HU [Staphylococcus aureus subsp. aureus NCTC
8325]
gi|148267957|ref|YP_001246900.1| histone family protein DNA-binding protein [Staphylococcus aureus
subsp. aureus JH9]
gi|150394021|ref|YP_001316696.1| histone family protein DNA-binding protein [Staphylococcus aureus
subsp. aureus JH1]
gi|151221594|ref|YP_001332416.1| DNA-binding protein HU [Staphylococcus aureus subsp. aureus str.
Newman]
gi|156979792|ref|YP_001442051.1| DNA-binding protein II [Staphylococcus aureus subsp. aureus Mu3]
gi|161509640|ref|YP_001575299.1| DNA-binding protein HU [Staphylococcus aureus subsp. aureus
USA300_TCH1516]
gi|221140960|ref|ZP_03565453.1| DNA-binding protein HU [Staphylococcus aureus subsp. aureus str.
JKD6009]
gi|239636854|ref|ZP_04677853.1| DNA-binding protein HU 1 [Staphylococcus warneri L37603]
gi|242242752|ref|ZP_04797197.1| DNA-binding protein II [Staphylococcus epidermidis W23144]
gi|242373780|ref|ZP_04819354.1| DNA-binding protein II [Staphylococcus epidermidis M23864:W1]
gi|251810895|ref|ZP_04825368.1| DNA-binding protein II [Staphylococcus epidermidis BCM-HMP0060]
gi|253315980|ref|ZP_04839193.1| DNA-binding protein HU [Staphylococcus aureus subsp. aureus str.
CF-Marseille]
gi|253732115|ref|ZP_04866280.1| DNA-binding protein II [Staphylococcus aureus subsp. aureus
USA300_TCH959]
gi|253733280|ref|ZP_04867445.1| DNA-binding protein II [Staphylococcus aureus subsp. aureus
TCH130]
gi|255006259|ref|ZP_05144860.2| DNA-binding protein HU [Staphylococcus aureus subsp. aureus
Mu50-omega]
gi|257425537|ref|ZP_05601962.1| histone family protein DNA-binding protein [Staphylococcus aureus
subsp. aureus 55/2053]
gi|257428196|ref|ZP_05604594.1| DNA-binding protein II [Staphylococcus aureus subsp. aureus
65-1322]
gi|257430826|ref|ZP_05607208.1| histone family protein DNA-binding protein [Staphylococcus aureus
subsp. aureus 68-397]
gi|257433585|ref|ZP_05609943.1| histone family protein DNA-binding protein [Staphylococcus aureus
subsp. aureus E1410]
gi|257436426|ref|ZP_05612473.1| DNA-binding protein II [Staphylococcus aureus subsp. aureus M876]
gi|257795472|ref|ZP_05644451.1| DNA-binding protein HU [Staphylococcus aureus A9781]
gi|258413280|ref|ZP_05681556.1| DNA-binding protein HU [Staphylococcus aureus A9763]
gi|258420613|ref|ZP_05683555.1| DNA-binding protein II [Staphylococcus aureus A9719]
gi|258422496|ref|ZP_05685404.1| DNA-binding protein II [Staphylococcus aureus A9635]
gi|258426808|ref|ZP_05688028.1| DNA-binding protein HU [Staphylococcus aureus A9299]
gi|258444806|ref|ZP_05693135.1| DNA-binding protein II [Staphylococcus aureus A8115]
gi|258447360|ref|ZP_05695504.1| DNA-binding protein HU [Staphylococcus aureus A6300]
gi|258449755|ref|ZP_05697856.1| DNA-binding protein II [Staphylococcus aureus A6224]
gi|258451131|ref|ZP_05699166.1| DNA-binding protein HU [Staphylococcus aureus A5948]
gi|258454575|ref|ZP_05702539.1| histone family protein DNA-binding protein [Staphylococcus aureus
A5937]
gi|262048995|ref|ZP_06021874.1| DNA-binding protein II [Staphylococcus aureus D30]
gi|262051642|ref|ZP_06023862.1| DNA-binding protein II [Staphylococcus aureus 930918-3]
gi|269203098|ref|YP_003282367.1| DNA-binding protein HU [Staphylococcus aureus subsp. aureus ED98]
gi|282876095|ref|ZP_06284962.1| DNA-binding protein HU [Staphylococcus epidermidis SK135]
gi|282892970|ref|ZP_06301205.1| DNA-binding protein HU-beta [Staphylococcus aureus A8117]
gi|282904055|ref|ZP_06311943.1| DNA-binding protein HU [Staphylococcus aureus subsp. aureus C160]
gi|282905819|ref|ZP_06313674.1| DNA-binding protein HU-beta [Staphylococcus aureus subsp. aureus
Btn1260]
gi|282908789|ref|ZP_06316607.1| integration host factor, beta subunit [Staphylococcus aureus
subsp. aureus WW2703/97]
gi|282911050|ref|ZP_06318852.1| integration host factor, beta subunit [Staphylococcus aureus
subsp. aureus WBG10049]
gi|282914263|ref|ZP_06322050.1| DNA-binding protein HU [Staphylococcus aureus subsp. aureus M899]
gi|282916740|ref|ZP_06324498.1| DNA-binding protein HBsu [Staphylococcus aureus subsp. aureus
D139]
gi|282919186|ref|ZP_06326921.1| DNA-binding protein HU-beta [Staphylococcus aureus subsp. aureus
C427]
gi|282921720|ref|ZP_06329437.1| DNA-binding protein HU [Staphylococcus aureus A9765]
gi|282924370|ref|ZP_06332044.1| DNA-binding protein HU [Staphylococcus aureus subsp. aureus C101]
gi|282928001|ref|ZP_06335610.1| DNA-binding protein HU-beta [Staphylococcus aureus A10102]
gi|283770545|ref|ZP_06343437.1| DNA-binding protein HU-beta [Staphylococcus aureus subsp. aureus
H19]
gi|283958237|ref|ZP_06375688.1| DNA-binding protein HU [Staphylococcus aureus subsp. aureus
A017934/97]
gi|284024471|ref|ZP_06378869.1| DNA-binding protein HU [Staphylococcus aureus subsp. aureus 132]
gi|293366560|ref|ZP_06613237.1| DNA-binding protein HU [Staphylococcus epidermidis
M23864:W2(grey)]
gi|293501288|ref|ZP_06667139.1| DNA-binding protein HBsu [Staphylococcus aureus subsp. aureus
58-424]
gi|293510250|ref|ZP_06668958.1| DNA-binding protein HU [Staphylococcus aureus subsp. aureus M809]
gi|293526845|ref|ZP_06671529.1| DNA-binding protein HU [Staphylococcus aureus subsp. aureus
M1015]
gi|294848436|ref|ZP_06789182.1| DNA-binding protein HU [Staphylococcus aureus A9754]
gi|295407222|ref|ZP_06817022.1| DNA-binding protein HU-beta [Staphylococcus aureus A8819]
gi|295427981|ref|ZP_06820613.1| DNA-binding protein HU [Staphylococcus aureus subsp. aureus
EMRSA16]
gi|296275330|ref|ZP_06857837.1| DNA-binding protein HU [Staphylococcus aureus subsp. aureus MR1]
gi|297207868|ref|ZP_06924301.1| DNA-binding protein HU [Staphylococcus aureus subsp. aureus ATCC
51811]
gi|297244646|ref|ZP_06928529.1| DNA-binding protein HU-beta [Staphylococcus aureus A8796]
gi|297591049|ref|ZP_06949687.1| DNA-binding protein HU [Staphylococcus aureus subsp. aureus MN8]
gi|300911953|ref|ZP_07129396.1| DNA-binding protein HU [Staphylococcus aureus subsp. aureus
TCH70]
gi|304380944|ref|ZP_07363603.1| DNA-binding protein HU [Staphylococcus aureus subsp. aureus ATCC
BAA-39]
gi|81694468|sp|Q5HFV0|DBH_STAAC RecName: Full=DNA-binding protein HU
gi|81696318|sp|Q6G990|DBH_STAAS RecName: Full=DNA-binding protein HU
gi|81696482|sp|Q6GGT8|DBH_STAAR RecName: Full=DNA-binding protein HU
gi|81704412|sp|Q7A0U9|DBH_STAAW RecName: Full=DNA-binding protein HU
gi|81705666|sp|Q7A5J1|DBH_STAAN RecName: Full=DNA-binding protein HU
gi|81781570|sp|Q99U17|DBH_STAAM RecName: Full=DNA-binding protein HU
gi|27315623|gb|AAO04757.1|AE016747_254 DNA-binding protein II [Staphylococcus epidermidis ATCC 12228]
gi|13701272|dbj|BAB42566.1| DNA-binding protein II [Staphylococcus aureus subsp. aureus N315]
gi|14247244|dbj|BAB57635.1| DNA-binding protein II [Staphylococcus aureus subsp. aureus Mu50]
gi|21204531|dbj|BAB95227.1| DNA-binding protein II [Staphylococcus aureus subsp. aureus MW2]
gi|49241789|emb|CAG40480.1| DNA-binding protein HU [Staphylococcus aureus subsp. aureus
MRSA252]
gi|49244755|emb|CAG43191.1| DNA-binding protein HU [Staphylococcus aureus subsp. aureus
MSSA476]
gi|57284614|gb|AAW36708.1| DNA-binding protein HU [Staphylococcus aureus subsp. aureus COL]
gi|57637644|gb|AAW54432.1| DNA-binding protein HU [Staphylococcus epidermidis RP62A]
gi|82656601|emb|CAI81024.1| DNA-binding protein II [Staphylococcus aureus RF122]
gi|87126479|gb|ABD20993.1| DNA-binding protein HU [Staphylococcus aureus subsp. aureus
USA300_FPR3757]
gi|87202765|gb|ABD30575.1| DNA-binding protein HU, putative [Staphylococcus aureus subsp.
aureus NCTC 8325]
gi|147741026|gb|ABQ49324.1| bacterial nucleoid protein Hbs [Staphylococcus aureus subsp.
aureus JH9]
gi|149946473|gb|ABR52409.1| histone family protein DNA-binding protein [Staphylococcus aureus
subsp. aureus JH1]
gi|150374394|dbj|BAF67654.1| DNA-binding protein HU [Staphylococcus aureus subsp. aureus str.
Newman]
gi|156721927|dbj|BAF78344.1| DNA-binding protein II [Staphylococcus aureus subsp. aureus Mu3]
gi|160368449|gb|ABX29420.1| DNA-binding protein HU [Staphylococcus aureus subsp. aureus
USA300_TCH1516]
gi|239597528|gb|EEQ80026.1| DNA-binding protein HU 1 [Staphylococcus warneri L37603]
gi|242233888|gb|EES36200.1| DNA-binding protein II [Staphylococcus epidermidis W23144]
gi|242348517|gb|EES40119.1| DNA-binding protein II [Staphylococcus epidermidis M23864:W1]
gi|251805575|gb|EES58232.1| DNA-binding protein II [Staphylococcus epidermidis BCM-HMP0060]
gi|253724162|gb|EES92891.1| DNA-binding protein II [Staphylococcus aureus subsp. aureus
USA300_TCH959]
gi|253728820|gb|EES97549.1| DNA-binding protein II [Staphylococcus aureus subsp. aureus
TCH130]
gi|257271994|gb|EEV04132.1| histone family protein DNA-binding protein [Staphylococcus aureus
subsp. aureus 55/2053]
gi|257275037|gb|EEV06524.1| DNA-binding protein II [Staphylococcus aureus subsp. aureus
65-1322]
gi|257278954|gb|EEV09573.1| histone family protein DNA-binding protein [Staphylococcus aureus
subsp. aureus 68-397]
gi|257281678|gb|EEV11815.1| histone family protein DNA-binding protein [Staphylococcus aureus
subsp. aureus E1410]
gi|257284708|gb|EEV14828.1| DNA-binding protein II [Staphylococcus aureus subsp. aureus M876]
gi|257789444|gb|EEV27784.1| DNA-binding protein HU [Staphylococcus aureus A9781]
gi|257839844|gb|EEV64312.1| DNA-binding protein HU [Staphylococcus aureus A9763]
gi|257843561|gb|EEV67968.1| DNA-binding protein II [Staphylococcus aureus A9719]
gi|257847253|gb|EEV71259.1| DNA-binding protein II [Staphylococcus aureus A9635]
gi|257849969|gb|EEV73927.1| DNA-binding protein HU [Staphylococcus aureus A9299]
gi|257850299|gb|EEV74252.1| DNA-binding protein II [Staphylococcus aureus A8115]
gi|257853551|gb|EEV76510.1| DNA-binding protein HU [Staphylococcus aureus A6300]
gi|257857003|gb|EEV79903.1| DNA-binding protein II [Staphylococcus aureus A6224]
gi|257861186|gb|EEV83999.1| DNA-binding protein HU [Staphylococcus aureus A5948]
gi|257862958|gb|EEV85722.1| histone family protein DNA-binding protein [Staphylococcus aureus
A5937]
gi|259160483|gb|EEW45507.1| DNA-binding protein II [Staphylococcus aureus 930918-3]
gi|259162927|gb|EEW47490.1| DNA-binding protein II [Staphylococcus aureus D30]
gi|262075388|gb|ACY11361.1| DNA-binding protein HU [Staphylococcus aureus subsp. aureus ED98]
gi|269940964|emb|CBI49348.1| DNA-binding protein HU [Staphylococcus aureus subsp. aureus TW20]
gi|281295120|gb|EFA87647.1| DNA-binding protein HU [Staphylococcus epidermidis SK135]
gi|282313757|gb|EFB44150.1| DNA-binding protein HU [Staphylococcus aureus subsp. aureus C101]
gi|282316996|gb|EFB47370.1| DNA-binding protein HU-beta [Staphylococcus aureus subsp. aureus
C427]
gi|282319227|gb|EFB49579.1| DNA-binding protein HBsu [Staphylococcus aureus subsp. aureus
D139]
gi|282322331|gb|EFB52655.1| DNA-binding protein HU [Staphylococcus aureus subsp. aureus M899]
gi|282324745|gb|EFB55055.1| integration host factor, beta subunit [Staphylococcus aureus
subsp. aureus WBG10049]
gi|282327053|gb|EFB57348.1| integration host factor, beta subunit [Staphylococcus aureus
subsp. aureus WW2703/97]
gi|282331111|gb|EFB60625.1| DNA-binding protein HU-beta [Staphylococcus aureus subsp. aureus
Btn1260]
gi|282590298|gb|EFB95378.1| DNA-binding protein HU-beta [Staphylococcus aureus A10102]
gi|282593982|gb|EFB98971.1| DNA-binding protein HU [Staphylococcus aureus A9765]
gi|282595673|gb|EFC00637.1| DNA-binding protein HU [Staphylococcus aureus subsp. aureus C160]
gi|282764967|gb|EFC05092.1| DNA-binding protein HU-beta [Staphylococcus aureus A8117]
gi|283460692|gb|EFC07782.1| DNA-binding protein HU-beta [Staphylococcus aureus subsp. aureus
H19]
gi|283470684|emb|CAQ49895.1| DNA-binding protein HU 1 (DNA-binding protein II) (HB)
[Staphylococcus aureus subsp. aureus ST398]
gi|283790386|gb|EFC29203.1| DNA-binding protein HU [Staphylococcus aureus subsp. aureus
A017934/97]
gi|285817153|gb|ADC37640.1| DNA-binding protein II HBsu [Staphylococcus aureus 04-02981]
gi|290920403|gb|EFD97467.1| DNA-binding protein HU [Staphylococcus aureus subsp. aureus
M1015]
gi|291096293|gb|EFE26554.1| DNA-binding protein HBsu [Staphylococcus aureus subsp. aureus
58-424]
gi|291319329|gb|EFE59698.1| DNA-binding protein HU [Staphylococcus epidermidis
M23864:W2(grey)]
gi|291467194|gb|EFF09712.1| DNA-binding protein HU [Staphylococcus aureus subsp. aureus M809]
gi|294824462|gb|EFG40885.1| DNA-binding protein HU [Staphylococcus aureus A9754]
gi|294967935|gb|EFG43964.1| DNA-binding protein HU-beta [Staphylococcus aureus A8819]
gi|295128339|gb|EFG57973.1| DNA-binding protein HU [Staphylococcus aureus subsp. aureus
EMRSA16]
gi|296887442|gb|EFH26342.1| DNA-binding protein HU [Staphylococcus aureus subsp. aureus ATCC
51811]
gi|297178676|gb|EFH37922.1| DNA-binding protein HU-beta [Staphylococcus aureus A8796]
gi|297575935|gb|EFH94651.1| DNA-binding protein HU [Staphylococcus aureus subsp. aureus MN8]
gi|298694762|gb|ADI97984.1| DNA-binding protein II [Staphylococcus aureus subsp. aureus
ED133]
gi|300886199|gb|EFK81401.1| DNA-binding protein HU [Staphylococcus aureus subsp. aureus
TCH70]
gi|302333083|gb|ADL23276.1| histone family protein DNA-binding protein HU [Staphylococcus
aureus subsp. aureus JKD6159]
gi|302751303|gb|ADL65480.1| histone family protein DNA-binding protein HU [Staphylococcus
aureus subsp. aureus str. JKD6008]
gi|304340530|gb|EFM06465.1| DNA-binding protein HU [Staphylococcus aureus subsp. aureus ATCC
BAA-39]
gi|312438124|gb|ADQ77195.1| DNA-binding protein HU [Staphylococcus aureus subsp. aureus
TCH60]
gi|312829863|emb|CBX34705.1| DNA-binding protein HU 1 (DNA-binding protein II) (HB)
[Staphylococcus aureus subsp. aureus ECT-R 2]
gi|315129189|gb|EFT85184.1| DNA-binding protein HU [Staphylococcus aureus subsp. aureus
CGS03]
gi|315195370|gb|EFU25757.1| DNA-binding protein HU [Staphylococcus aureus subsp. aureus
CGS00]
gi|315197780|gb|EFU28114.1| DNA-binding protein HU [Staphylococcus aureus subsp. aureus
CGS01]
gi|319400822|gb|EFV89041.1| DNA-binding protein HU 1 [Staphylococcus epidermidis FRI909]
gi|320140355|gb|EFW32211.1| DNA-binding protein HU [Staphylococcus aureus subsp. aureus
MRSA131]
gi|320142718|gb|EFW34521.1| DNA-binding protein HU [Staphylococcus aureus subsp. aureus
MRSA177]
gi|323439525|gb|EGA97246.1| DNA-binding protein II [Staphylococcus aureus O11]
gi|323442236|gb|EGA99867.1| DNA-binding protein II [Staphylococcus aureus O46]
gi|329314149|gb|AEB88562.1| DNA-binding protein HU [Staphylococcus aureus subsp. aureus
T0131]
gi|329723176|gb|EGG59707.1| DNA-binding protein HU-beta [Staphylococcus aureus subsp. aureus
21189]
gi|329725443|gb|EGG61926.1| DNA-binding protein HU-beta [Staphylococcus epidermidis VCU144]
gi|329727498|gb|EGG63954.1| DNA-binding protein HU-beta [Staphylococcus aureus subsp. aureus
21172]
gi|329731360|gb|EGG67726.1| DNA-binding protein HU-beta [Staphylococcus aureus subsp. aureus
21193]
gi|329735377|gb|EGG71669.1| DNA-binding protein HU-beta [Staphylococcus epidermidis VCU045]
gi|329737246|gb|EGG73500.1| DNA-binding protein HU-beta [Staphylococcus epidermidis VCU028]
gi|330686039|gb|EGG97662.1| DNA-binding protein HU-beta [Staphylococcus epidermidis VCU121]
Length = 90
Score = 100 bits (249), Expect = 8e-20, Method: Composition-based stats.
Identities = 34/91 (37%), Positives = 53/91 (58%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI +A++ L ++ V+ + E + +LA G +V++ GFG+F VR+RAAR
Sbjct: 1 MNKTDLINAVAEQ-ADLTKKEAGSAVDAVFESIQNSLAKGEKVQLIGFGNFEVRERAARK 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P K I + VP F+AGK LK+ +
Sbjct: 60 GRNPQTGKEIDIPASKVPAFKAGKALKDAVK 90
>gi|301629967|ref|XP_002944103.1| PREDICTED: DNA-binding protein HU-beta-like [Xenopus (Silurana)
tropicalis]
Length = 139
Score = 100 bits (249), Expect = 8e-20, Method: Composition-based stats.
Identities = 32/90 (35%), Positives = 47/90 (52%), Gaps = 1/90 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ LI IA + ++ + + +E + + L G V + GFG+F+V KRAAR
Sbjct: 51 NKTELIEHIAT-HADISKAAAARALESTIEAVKKTLKKGDTVSLVGFGTFAVGKRAARTG 109
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P I ++ VP FR GK LK+ LN
Sbjct: 110 RNPRTGATIKIKAAKVPKFRPGKALKDALN 139
>gi|23099247|ref|NP_692713.1| non-specific DNA-binding protein [Oceanobacillus iheyensis
HTE831]
gi|22777476|dbj|BAC13748.1| non-specific DNA-binding protein [Oceanobacillus iheyensis
HTE831]
Length = 90
Score = 100 bits (249), Expect = 8e-20, Method: Composition-based stats.
Identities = 33/91 (36%), Positives = 56/91 (61%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ L+ +A+K+ +L+ +D K V+ + E + +L NG +V++ GFG+F VR+R+AR
Sbjct: 1 MNKTDLVNAVAEKS-ELSKKDATKAVDAVFESVMDSLKNGEKVQLIGFGNFEVRERSARK 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + I + VP F+ GK LK+ +
Sbjct: 60 GRNPQTGEEIEIPASKVPAFKPGKALKDSVK 90
>gi|15677102|ref|NP_274254.1| DNA-binding protein HU-beta [Neisseria meningitidis MC58]
gi|121634923|ref|YP_975168.1| putative DNA-binding protein [Neisseria meningitidis FAM18]
gi|161870073|ref|YP_001599243.1| DNA-binding protein [Neisseria meningitidis 053442]
gi|218768232|ref|YP_002342744.1| putative DNA-binding protein [Neisseria meningitidis Z2491]
gi|254805009|ref|YP_003083230.1| DNA-binding protein [Neisseria meningitidis alpha14]
gi|304387508|ref|ZP_07369697.1| DNA-binding protein HU-beta [Neisseria meningitidis ATCC 13091]
gi|54036950|sp|P64389|DBHB_NEIMB RecName: Full=DNA-binding protein HU-beta
gi|54041019|sp|P64388|DBHB_NEIMA RecName: Full=DNA-binding protein HU-beta
gi|7226469|gb|AAF41611.1| DNA-binding protein HU-beta [Neisseria meningitidis MC58]
gi|120866629|emb|CAM10380.1| putative DNA-binding protein [Neisseria meningitidis FAM18]
gi|121052240|emb|CAM08565.1| putative DNA-binding protein [Neisseria meningitidis Z2491]
gi|161595626|gb|ABX73286.1| DNA-binding protein [Neisseria meningitidis 053442]
gi|254668551|emb|CBA06006.1| DNA-binding protein [Neisseria meningitidis alpha14]
gi|254669519|emb|CBA03455.1| DNA-binding protein HU-beta [Neisseria meningitidis alpha153]
gi|261392508|emb|CAX50059.1| DNA-binding protein HU [Neisseria meningitidis 8013]
gi|304338395|gb|EFM04516.1| DNA-binding protein HU-beta [Neisseria meningitidis ATCC 13091]
gi|308389323|gb|ADO31643.1| putative DNA-binding protein [Neisseria meningitidis alpha710]
gi|316985087|gb|EFV64040.1| DNA-binding protein HU-beta [Neisseria meningitidis H44/76]
gi|319410479|emb|CBY90840.1| DNA-binding protein HU-A [Neisseria meningitidis WUE 2594]
gi|325128364|gb|EGC51248.1| DNA-binding protein HU-beta [Neisseria meningitidis N1568]
gi|325132586|gb|EGC55279.1| DNA-binding protein HU-beta [Neisseria meningitidis M6190]
gi|325134523|gb|EGC57168.1| DNA-binding protein HU-beta [Neisseria meningitidis M13399]
gi|325136284|gb|EGC58892.1| DNA-binding protein HU-beta [Neisseria meningitidis M0579]
gi|325138359|gb|EGC60928.1| DNA-binding protein HU-beta [Neisseria meningitidis ES14902]
gi|325140540|gb|EGC63061.1| DNA-binding protein HU-beta [Neisseria meningitidis CU385]
gi|325144626|gb|EGC66925.1| DNA-binding protein HU-beta [Neisseria meningitidis M01-240013]
gi|325198363|gb|ADY93819.1| DNA-binding protein HU-beta [Neisseria meningitidis G2136]
gi|325200140|gb|ADY95595.1| DNA-binding protein HU-beta [Neisseria meningitidis H44/76]
gi|325202076|gb|ADY97530.1| DNA-binding protein HU-beta [Neisseria meningitidis M01-240149]
gi|325204214|gb|ADY99667.1| DNA-binding protein HU-beta [Neisseria meningitidis M01-240355]
gi|325205994|gb|ADZ01447.1| DNA-binding protein HU-beta [Neisseria meningitidis M04-240196]
gi|325208170|gb|ADZ03622.1| DNA-binding protein HU-beta [Neisseria meningitidis NZ-05/33]
Length = 89
Score = 100 bits (249), Expect = 8e-20, Method: Composition-based stats.
Identities = 32/90 (35%), Positives = 48/90 (53%), Gaps = 1/90 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI IA++ ++ +K ++ +T AL G V + GFG+F V +RA R
Sbjct: 1 MNKSELIEAIAQE-ADISKAAAQKALDATTNAVTTALKQGDTVTLVGFGTFYVGERAERQ 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P + +++ P FRAGK LK+ L
Sbjct: 60 GRNPKTGEPLTIAAAKTPKFRAGKALKDAL 89
>gi|227873321|ref|ZP_03991583.1| DNA-binding protein HU [Oribacterium sinus F0268]
gi|227840836|gb|EEJ51204.1| DNA-binding protein HU [Oribacterium sinus F0268]
Length = 90
Score = 100 bits (249), Expect = 8e-20, Method: Composition-based stats.
Identities = 32/91 (35%), Positives = 53/91 (58%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K L+ +A K +L+ +D V + + +++AL G +V++ GFG+F V +RAAR
Sbjct: 1 MNKVDLVSAVA-KQAELSKKDAGLAVEAVFDAISEALEKGDKVQLIGFGTFDVSERAARE 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + + + P F+AGK LK+R+N
Sbjct: 60 GRNPRTGETMKIAASKAPRFKAGKALKDRVN 90
>gi|167036676|ref|YP_001664254.1| histone family protein DNA-binding protein [Thermoanaerobacter
pseudethanolicus ATCC 33223]
gi|167039345|ref|YP_001662330.1| histone family protein DNA-binding protein [Thermoanaerobacter
sp. X514]
gi|256752345|ref|ZP_05493206.1| histone family protein DNA-binding protein [Thermoanaerobacter
ethanolicus CCSD1]
gi|300913985|ref|ZP_07131302.1| histone family protein DNA-binding protein [Thermoanaerobacter
sp. X561]
gi|307725332|ref|YP_003905083.1| histone family protein DNA-binding protein [Thermoanaerobacter
sp. X513]
gi|320115103|ref|YP_004185262.1| histone family protein DNA-binding protein [Thermoanaerobacter
brockii subsp. finnii Ako-1]
gi|166853585|gb|ABY91994.1| histone family protein DNA-binding protein [Thermoanaerobacter
sp. X514]
gi|166855510|gb|ABY93918.1| histone family protein DNA-binding protein [Thermoanaerobacter
pseudethanolicus ATCC 33223]
gi|256748756|gb|EEU61799.1| histone family protein DNA-binding protein [Thermoanaerobacter
ethanolicus CCSD1]
gi|300890670|gb|EFK85815.1| histone family protein DNA-binding protein [Thermoanaerobacter
sp. X561]
gi|307582393|gb|ADN55792.1| histone family protein DNA-binding protein [Thermoanaerobacter
sp. X513]
gi|319928194|gb|ADV78879.1| histone family protein DNA-binding protein [Thermoanaerobacter
brockii subsp. finnii Ako-1]
Length = 91
Score = 100 bits (249), Expect = 8e-20, Method: Composition-based stats.
Identities = 38/92 (41%), Positives = 60/92 (65%), Gaps = 1/92 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ L+ IA+K+ +L +D EK +N +E + +AL NG +V++ GFG+F VR+RA R
Sbjct: 1 MNKADLVAKIAEKS-ELTKKDAEKALNAFIEAVEEALKNGDKVQLVGFGTFEVRERAERK 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P ++ I++ P F+AGK LK+ +NS
Sbjct: 60 GRNPQTKEEITIPASKAPIFKAGKALKDLVNS 91
>gi|297616318|ref|YP_003701477.1| histone family protein DNA-binding protein [Syntrophothermus
lipocalidus DSM 12680]
gi|297144155|gb|ADI00912.1| histone family protein DNA-binding protein [Syntrophothermus
lipocalidus DSM 12680]
Length = 90
Score = 100 bits (249), Expect = 8e-20, Method: Composition-based stats.
Identities = 34/90 (37%), Positives = 55/90 (61%), Gaps = 1/90 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ L+ +A K + +DVEK++N L + +AL +G +V++ GFG+F VR+R AR
Sbjct: 1 MNKTDLVAKVASK-ANMTKKDVEKVINTLFATIEEALKDGSKVQLVGFGTFEVRERQARK 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P + I + +P F+AGK LK+ +
Sbjct: 60 GRNPQTGEEIEIPAARIPAFKAGKALKDAV 89
>gi|218780729|ref|YP_002432047.1| histone family protein DNA-binding protein [Desulfatibacillum
alkenivorans AK-01]
gi|218762113|gb|ACL04579.1| histone family protein DNA-binding protein [Desulfatibacillum
alkenivorans AK-01]
Length = 89
Score = 100 bits (249), Expect = 8e-20, Method: Composition-based stats.
Identities = 30/91 (32%), Positives = 47/91 (51%), Gaps = 2/91 (2%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI +AK +D + V+ + +++AL V + GFG+F V KR AR
Sbjct: 1 MNKADLIEEVAKVLG--TKKDAQAAVDCVFATISEALKKDDAVTLVGFGTFKVDKRQARK 58
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + + + + VP F GK LK+ +N
Sbjct: 59 GRNPRTGEALDIPARNVPKFNPGKALKDAVN 89
>gi|212702269|ref|ZP_03310397.1| hypothetical protein DESPIG_00280 [Desulfovibrio piger ATCC
29098]
gi|212674332|gb|EEB34815.1| hypothetical protein DESPIG_00280 [Desulfovibrio piger ATCC
29098]
Length = 90
Score = 100 bits (249), Expect = 8e-20, Method: Composition-based stats.
Identities = 29/91 (31%), Positives = 46/91 (50%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ L+ IA K L E+ +N L + ++LA R+ + GFG+F V R R
Sbjct: 1 MTKADLVEKIAAK-ANLTKAAAERALNAFLASVEESLAKDDRLTLTGFGTFVVETRKERQ 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + +++ + FR GK LK+ L+
Sbjct: 60 GRNPRTGETLTIPACKMVKFRPGKMLKDALD 90
>gi|332798190|ref|YP_004459689.1| histone family protein DNA-binding protein [Tepidanaerobacter sp.
Re1]
gi|332695925|gb|AEE90382.1| histone family protein DNA-binding protein [Tepidanaerobacter sp.
Re1]
Length = 91
Score = 100 bits (249), Expect = 9e-20, Method: Composition-based stats.
Identities = 34/92 (36%), Positives = 57/92 (61%), Gaps = 1/92 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI +A+K+ L +D EK +N +E + +AL +V++ GFG+F VR+R++R
Sbjct: 1 MNKAELITAMAEKS-GLTKKDSEKALNAFIESVEEALVKRDKVQLVGFGTFEVRERSSRK 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P + I + +P F+AGK LK+ +N+
Sbjct: 60 GRNPQTGEEIDIPAASIPAFKAGKALKDSINN 91
>gi|309781951|ref|ZP_07676682.1| DNA-binding protein HU-beta [Ralstonia sp. 5_7_47FAA]
gi|308919295|gb|EFP64961.1| DNA-binding protein HU-beta [Ralstonia sp. 5_7_47FAA]
Length = 90
Score = 100 bits (249), Expect = 9e-20, Method: Composition-based stats.
Identities = 31/91 (34%), Positives = 51/91 (56%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI +A + ++ + ++ L++ + AL +GG V + GFG+F V KR++R
Sbjct: 1 MNKTDLIDHVAAQT-DMSKAAAGRAIDALIDGIKDALCDGGSVTLVGFGTFLVGKRSSRN 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P I++E V F+ GK LK+ LN
Sbjct: 60 GRNPRTGAAITIEGGKVAKFKPGKALKDALN 90
>gi|154498745|ref|ZP_02037123.1| hypothetical protein BACCAP_02736 [Bacteroides capillosus ATCC
29799]
gi|150272135|gb|EDM99339.1| hypothetical protein BACCAP_02736 [Bacteroides capillosus ATCC
29799]
Length = 91
Score = 100 bits (249), Expect = 9e-20, Method: Composition-based stats.
Identities = 35/90 (38%), Positives = 55/90 (61%), Gaps = 1/90 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI A+K L+ +D E +N L+ + ALA G ++++ GFGSF V+ RAAR+
Sbjct: 1 MNKAELINAAAEK-AGLSKKDTENALNAALDVIAAALAEGDKIQLVGFGSFEVKSRAARI 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P ++ I++ VP F+ GK LK+ +
Sbjct: 60 GRNPKTKEEITIPASKVPVFKPGKALKDAV 89
>gi|262370394|ref|ZP_06063720.1| integration host factor beta subunit [Acinetobacter johnsonii
SH046]
gi|262314736|gb|EEY95777.1| integration host factor beta subunit [Acinetobacter johnsonii
SH046]
Length = 101
Score = 100 bits (249), Expect = 9e-20, Method: Composition-based stats.
Identities = 37/91 (40%), Positives = 56/91 (61%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
KS LI I+ KNP L VE+ V +++++M +L++ R+EIRGFGSF++ R R+
Sbjct: 7 NKSDLIERISLKNPHLAEPLVEEAVKIMIDQMIASLSSDNRIEIRGFGSFALHHREPRVG 66
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P K + V K VP F+ GK L++ +N
Sbjct: 67 RNPKTGKSVEVAAKAVPHFKPGKALRDAVNE 97
>gi|78357794|ref|YP_389243.1| histone-like DNA-binding protein [Desulfovibrio desulfuricans
subsp. desulfuricans str. G20]
gi|78220199|gb|ABB39548.1| histone-like DNA-binding protein [Desulfovibrio desulfuricans
subsp. desulfuricans str. G20]
Length = 91
Score = 100 bits (249), Expect = 9e-20, Method: Composition-based stats.
Identities = 30/91 (32%), Positives = 46/91 (50%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ L+ IA K + E ++ + +T+AL+ G V GFGSF V +RAAR
Sbjct: 1 MTKAELVQKIAAKAGMNSKTQAESALDATIAVITEALSAGDSVTFTGFGSFKVAERAARK 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + +++ V F GK LK+ +
Sbjct: 61 GRNPRTGEEMTIPASKVVKFTPGKALKDAVK 91
>gi|83311888|ref|YP_422152.1| nucleoid DNA-binding protein [Magnetospirillum magneticum AMB-1]
gi|82946729|dbj|BAE51593.1| Bacterial nucleoid DNA-binding protein [Magnetospirillum magneticum
AMB-1]
Length = 136
Score = 100 bits (249), Expect = 9e-20, Method: Composition-based stats.
Identities = 32/89 (35%), Positives = 47/89 (52%), Gaps = 1/89 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ L+ +A L+ D K V+ + E +T AL G V + GFG+F+V RAA
Sbjct: 48 NKNDLVTAVAGA-AGLSKADAAKAVDGVFEAITSALKGGDEVRLVGFGTFAVASRAASEG 106
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P + IS+ P F+AGK LK+ +
Sbjct: 107 RNPRTGEKISIPASKQPKFKAGKGLKDGI 135
>gi|300721988|ref|YP_003711268.1| DNA-binding protein HU-beta, NS1 [Xenorhabdus nematophila ATCC
19061]
gi|297628485|emb|CBJ89050.1| DNA-binding protein HU-beta, NS1 (HU-1), plays a role in DNA
replication and in rpo translation [Xenorhabdus
nematophila ATCC 19061]
Length = 96
Score = 100 bits (249), Expect = 9e-20, Method: Composition-based stats.
Identities = 35/91 (38%), Positives = 54/91 (59%), Gaps = 1/91 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
KS LI IA + ++ ++V+ + +++AL +G V + GFG+FSVR+RAAR
Sbjct: 7 NKSQLIDKIAA-DVNISKAAAGRVVDAFISSVSEALKDGDDVALVGFGTFSVRERAARTG 65
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P K I + VP FR+GK LK+ +N+
Sbjct: 66 RNPQTGKEIKIAAAKVPAFRSGKGLKDAVNA 96
>gi|229017681|ref|ZP_04174572.1| DNA-binding protein HU 1 [Bacillus cereus AH1273]
gi|229023899|ref|ZP_04180382.1| DNA-binding protein HU 1 [Bacillus cereus AH1272]
gi|229173057|ref|ZP_04300608.1| DNA-binding protein HU 1 [Bacillus cereus MM3]
gi|228610390|gb|EEK67661.1| DNA-binding protein HU 1 [Bacillus cereus MM3]
gi|228737412|gb|EEL87924.1| DNA-binding protein HU 1 [Bacillus cereus AH1272]
gi|228743607|gb|EEL93716.1| DNA-binding protein HU 1 [Bacillus cereus AH1273]
Length = 90
Score = 100 bits (249), Expect = 9e-20, Method: Composition-based stats.
Identities = 30/91 (32%), Positives = 53/91 (58%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ L+ +A ++ ++ ++ V + + + AL +G +V++ GFG+F VR+R+AR
Sbjct: 1 MNKTELVKNVA-QSADISQKEASAAVQSVFDTIATALQSGDKVQLIGFGTFEVRERSART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + I + VP F+AGK LKE +
Sbjct: 60 GRNPQTGEEIQIAAGKVPAFKAGKELKEAVK 90
>gi|190891275|ref|YP_001977817.1| bacterial nucleoid DNA-binding protein [Rhizobium etli CIAT 652]
gi|218462450|ref|ZP_03502541.1| bacterial nucleoid DNA-binding protein [Rhizobium etli Kim 5]
gi|241204076|ref|YP_002975172.1| histone family protein DNA-binding protein [Rhizobium
leguminosarum bv. trifolii WSM1325]
gi|190696554|gb|ACE90639.1| bacterial nucleoid DNA-binding protein [Rhizobium etli CIAT 652]
gi|240857966|gb|ACS55633.1| histone family protein DNA-binding protein [Rhizobium
leguminosarum bv. trifolii WSM1325]
Length = 91
Score = 100 bits (249), Expect = 9e-20, Method: Composition-based stats.
Identities = 30/91 (32%), Positives = 46/91 (50%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ L+ +A+K L D V+ + + + L N G + + GFGSF+V RAA
Sbjct: 1 MNKNELVSAVAEK-AGLTKSDAASAVDAVFDVVQAELKNKGDIRLAGFGSFTVSHRAASK 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + + + VP F GK LK+ +N
Sbjct: 60 GRNPSTGAEVDIPARNVPKFTPGKGLKDAVN 90
>gi|157369341|ref|YP_001477330.1| histone family protein DNA-binding protein [Serratia proteamaculans
568]
gi|157321105|gb|ABV40202.1| histone family protein DNA-binding protein [Serratia proteamaculans
568]
Length = 101
Score = 99.8 bits (248), Expect = 9e-20, Method: Composition-based stats.
Identities = 34/90 (37%), Positives = 50/90 (55%), Gaps = 1/90 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
KS LI IA ++ + ++ ++ +T +L G V + GFGSF+VR+R+AR
Sbjct: 13 NKSQLIDKIAA-GADISKAAAGRALDAVIASVTDSLKEGDDVALVGFGSFTVRERSARTG 71
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P K I + VP FRAGK LK+ +N
Sbjct: 72 RNPQTGKEIKIAAAKVPAFRAGKALKDAVN 101
>gi|86357227|ref|YP_469119.1| nucleoid DNA-binding protein [Rhizobium etli CFN 42]
gi|118255|sp|P02348|DBH5_RHILE RecName: Full=DNA-binding protein HRL53; AltName: Full=HU-like
protein; AltName: Full=Px
gi|3694946|gb|AAC62499.1| HU-like protein [Rhizobium leguminosarum]
gi|29650883|gb|AAO86518.1| Hurl [Rhizobium leguminosarum bv. viciae]
gi|86281329|gb|ABC90392.1| bacterial nucleoid DNA-binding protein [Rhizobium etli CFN 42]
Length = 91
Score = 99.8 bits (248), Expect = 9e-20, Method: Composition-based stats.
Identities = 30/91 (32%), Positives = 46/91 (50%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ L+ +A+K L D V+ + + + L N G + + GFGSF+V RAA
Sbjct: 1 MNKNELVSAVAEK-AGLTKSDAASAVDAVFDVVQAELKNKGDIRLAGFGSFTVSHRAATK 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + + + VP F GK LK+ +N
Sbjct: 60 GRNPSTGAEVDIPARNVPKFTPGKGLKDAVN 90
>gi|270263573|ref|ZP_06191842.1| histone family protein DNA-binding protein [Serratia odorifera
4Rx13]
gi|270042457|gb|EFA15552.1| histone family protein DNA-binding protein [Serratia odorifera
4Rx13]
Length = 101
Score = 99.8 bits (248), Expect = 9e-20, Method: Composition-based stats.
Identities = 34/90 (37%), Positives = 52/90 (57%), Gaps = 1/90 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
KS LI IA ++ + ++ ++ +T++L G V + GFGSF+VR+R+AR
Sbjct: 13 NKSQLIDKIAA-GADISKAAAGRALDAVIASVTESLKEGDDVALVGFGSFTVRERSARTG 71
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P K I++ VP FRAGK LK+ +N
Sbjct: 72 RNPQTGKEINIAAAKVPAFRAGKALKDAVN 101
>gi|229591359|ref|YP_002873478.1| DNA-binding protein HU-beta [Pseudomonas fluorescens SBW25]
gi|312961786|ref|ZP_07776284.1| DNA-binding protein HU, beta subunit [Pseudomonas fluorescens
WH6]
gi|213521162|gb|ACJ50519.1| DNA-binding protein HU-beta [Pseudomonas fluorescens]
gi|229363225|emb|CAY50308.1| DNA-binding protein HU-beta [Pseudomonas fluorescens SBW25]
gi|256556955|gb|ACU83577.1| DNA-binding protein HU-beta [uncultured bacterium HF130_AEPn_2]
gi|311284045|gb|EFQ62628.1| DNA-binding protein HU, beta subunit [Pseudomonas fluorescens
WH6]
Length = 90
Score = 99.8 bits (248), Expect = 9e-20, Method: Composition-based stats.
Identities = 34/91 (37%), Positives = 48/91 (52%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI IA + + + ++ ++E +T AL G V + GFG+FSV R AR
Sbjct: 1 MNKSELIDAIAA-SADIPKAAAGRALDAVIESVTGALKAGDSVVLVGFGTFSVTDRPART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P K + + P F+AGK LKE +N
Sbjct: 60 GRNPQTGKALQIAAAKKPGFKAGKALKEAVN 90
>gi|15597001|ref|NP_250495.1| DNA-binding protein HU [Pseudomonas aeruginosa PAO1]
gi|116049754|ref|YP_791439.1| DNA-binding protein HU [Pseudomonas aeruginosa UCBPP-PA14]
gi|152988765|ref|YP_001348851.1| DNA-binding protein HU [Pseudomonas aeruginosa PA7]
gi|218892242|ref|YP_002441109.1| DNA-binding protein HU [Pseudomonas aeruginosa LESB58]
gi|254234898|ref|ZP_04928221.1| DNA-binding protein HU [Pseudomonas aeruginosa C3719]
gi|254240197|ref|ZP_04933519.1| DNA-binding protein HU [Pseudomonas aeruginosa 2192]
gi|296389805|ref|ZP_06879280.1| DNA-binding protein HU [Pseudomonas aeruginosa PAb1]
gi|313110501|ref|ZP_07796386.1| DNA-binding protein HU [Pseudomonas aeruginosa 39016]
gi|12643997|sp|P05384|DBHB_PSEAE RecName: Full=DNA-binding protein HU-beta
gi|9947787|gb|AAG05193.1|AE004606_7 DNA-binding protein HU [Pseudomonas aeruginosa PAO1]
gi|115584975|gb|ABJ10990.1| DNA-binding protein HU [Pseudomonas aeruginosa UCBPP-PA14]
gi|126166829|gb|EAZ52340.1| DNA-binding protein HU [Pseudomonas aeruginosa C3719]
gi|126193575|gb|EAZ57638.1| DNA-binding protein HU [Pseudomonas aeruginosa 2192]
gi|150963923|gb|ABR85948.1| DNA-binding protein HU [Pseudomonas aeruginosa PA7]
gi|218772468|emb|CAW28250.1| DNA-binding protein HU [Pseudomonas aeruginosa LESB58]
gi|310882888|gb|EFQ41482.1| DNA-binding protein HU [Pseudomonas aeruginosa 39016]
Length = 90
Score = 99.8 bits (248), Expect = 1e-19, Method: Composition-based stats.
Identities = 34/91 (37%), Positives = 52/91 (57%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI IA + + + ++ ++E +T AL G V + GFG+F+V++RAAR
Sbjct: 1 MNKSELIDAIAA-SADIPKAVAGRALDAVIESVTGALKAGDSVVLVGFGTFAVKERAART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P K I + +P F+AGK LK+ +N
Sbjct: 60 GRNPQTGKPIKIAAAKIPGFKAGKALKDAVN 90
>gi|260887856|ref|ZP_05899119.1| DNA-binding protein HU [Selenomonas sputigena ATCC 35185]
gi|330838724|ref|YP_004413304.1| histone family protein DNA-binding protein [Selenomonas sputigena
ATCC 35185]
gi|260862362|gb|EEX76862.1| DNA-binding protein HU [Selenomonas sputigena ATCC 35185]
gi|329746488|gb|AEB99844.1| histone family protein DNA-binding protein [Selenomonas sputigena
ATCC 35185]
Length = 92
Score = 99.8 bits (248), Expect = 1e-19, Method: Composition-based stats.
Identities = 33/93 (35%), Positives = 55/93 (59%), Gaps = 1/93 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ L+ +A+K L+ + E+ + ++E + +AL G +V++ GFG+F V+ RAAR
Sbjct: 1 MNKTELVANVAEK-AGLSKKVAEQALGAIIESIEEALVEGDKVQLIGFGTFEVKDRAART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSP 93
R P K I + P F+AGK LK+ +N+
Sbjct: 60 GRNPQTGKEIKIAASRNPVFKAGKALKDAVNNK 92
>gi|224476592|ref|YP_002634198.1| DNA-binding protein HU [Staphylococcus carnosus subsp. carnosus
TM300]
gi|222421199|emb|CAL28013.1| DNA-binding protein HU [Staphylococcus carnosus subsp. carnosus
TM300]
Length = 90
Score = 99.8 bits (248), Expect = 1e-19, Method: Composition-based stats.
Identities = 33/91 (36%), Positives = 54/91 (59%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI +A++ +L ++ V+ + E + +L+ G +V++ GFG+F VR+RAAR
Sbjct: 1 MNKTDLINAVAEQ-AELTKKEAGLAVDAVFESIQSSLSKGEKVQLIGFGNFEVRERAARK 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P K I + VP F+AGK LK+ +
Sbjct: 60 GRNPQTGKEIDIPASKVPAFKAGKALKDAVK 90
>gi|228476046|ref|ZP_04060754.1| DNA-binding protein HU 1 [Staphylococcus hominis SK119]
gi|314936394|ref|ZP_07843741.1| DNA-binding protein HU [Staphylococcus hominis subsp. hominis
C80]
gi|228269869|gb|EEK11349.1| DNA-binding protein HU 1 [Staphylococcus hominis SK119]
gi|313655013|gb|EFS18758.1| DNA-binding protein HU [Staphylococcus hominis subsp. hominis
C80]
Length = 90
Score = 99.8 bits (248), Expect = 1e-19, Method: Composition-based stats.
Identities = 33/91 (36%), Positives = 53/91 (58%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI +A++ L ++ V+ + E + +L+ G +V++ GFG+F VR+RAAR
Sbjct: 1 MNKTDLINAVAEQ-ADLTKKEAGSAVDAVFESIQNSLSKGEKVQLIGFGNFEVRERAARK 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P K I + VP F+AGK LK+ +
Sbjct: 60 GRNPQTGKEIEIPASKVPAFKAGKALKDAVK 90
>gi|134288835|ref|YP_001111235.1| gp35 [Burkholderia phage phiE255]
gi|134132171|gb|ABO60692.1| gp35 [Burkholderia phage phiE255]
Length = 90
Score = 99.8 bits (248), Expect = 1e-19, Method: Composition-based stats.
Identities = 34/91 (37%), Positives = 47/91 (51%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI +A + L D + +LE +T++L G V + GFG FSV RAAR
Sbjct: 1 MNKSDLINHVAAET-GLTKADSGFALEAVLEGITKSLRKGDTVTLTGFGVFSVGARAART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + I + P F+AGK LK+ +
Sbjct: 60 GRNPATGEEIKIPASKAPKFKAGKGLKDAVK 90
>gi|161598603|ref|YP_001573818.1| small DNA-binding protein [Bacillus thuringiensis serovar
israelensis]
gi|228905297|ref|ZP_04069279.1| DNA-binding protein HU [Bacillus thuringiensis IBL 4222]
gi|21685470|emb|CAD30132.1| small DNA-binding protein (bacterial histone-like family)
[Bacillus thuringiensis serovar israelensis]
gi|228854334|gb|EEM99010.1| DNA-binding protein HU [Bacillus thuringiensis IBL 4222]
Length = 92
Score = 99.8 bits (248), Expect = 1e-19, Method: Composition-based stats.
Identities = 36/93 (38%), Positives = 54/93 (58%), Gaps = 1/93 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI +A ++ +L V+ +LE + AL NG V++ GFGSF V++RAAR
Sbjct: 1 MNKSELIKQVAIQS-ELKKPQASLAVDAVLESIQHALQNGDHVQLFGFGSFEVKERAARE 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSP 93
R P + +++ P F+AGK LKE +N+
Sbjct: 60 GRNPHTGEALTIPAGKTPAFKAGKALKEAVNAK 92
>gi|323144209|ref|ZP_08078844.1| DNA-binding protein HU-beta [Succinatimonas hippei YIT 12066]
gi|322416050|gb|EFY06749.1| DNA-binding protein HU-beta [Succinatimonas hippei YIT 12066]
Length = 92
Score = 99.8 bits (248), Expect = 1e-19, Method: Composition-based stats.
Identities = 32/91 (35%), Positives = 53/91 (58%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI IAK++ L+ + ++ +L +++AL+ G RV++ GFG+F + +R +R
Sbjct: 1 MNKSELIEQIAKRS-GLSLAGSRRALDAVLASVSEALSEGDRVQLVGFGTFKITERNSRE 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P +VI + P F AG LK+ +N
Sbjct: 60 GRNPKTGEVIQIPASKTPSFTAGAELKKAVN 90
>gi|188584610|ref|YP_001928095.1| integration host factor, beta subunit [Methylobacterium populi
BJ001]
gi|179348472|gb|ACB83519.1| integration host factor, beta subunit [Methylobacterium populi
BJ001]
Length = 94
Score = 99.8 bits (248), Expect = 1e-19, Method: Composition-based stats.
Identities = 44/90 (48%), Positives = 60/90 (66%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
MIKS LI + ++NP L +DVE +VN +LE +T A+ G RVE+RGFG+FSV+ R AR
Sbjct: 1 MIKSELILRLVEQNPHLYARDVEAVVNTILETITAAMERGDRVELRGFGAFSVKHREARQ 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P + ++VE K P FR GK L+ +L
Sbjct: 61 GRNPRSGAAVAVEAKTAPVFRPGKELRLKL 90
>gi|62195080|ref|YP_220427.1| hypothetical protein p49879_2p18 [Leptospirillum ferrooxidans]
gi|61105596|gb|AAX38515.1| ORF98 [Leptospirillum ferrooxidans]
Length = 98
Score = 99.8 bits (248), Expect = 1e-19, Method: Composition-based stats.
Identities = 25/91 (27%), Positives = 52/91 (57%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ L+ +++ + L+ +DV+ +++ L + +L G +V + GFG+F K+ AR
Sbjct: 1 MNKTELVASVSD-SSNLSKKDVQAVLDGFLAAIEHSLKKGEKVALVGFGTFETVKKEART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + + + + P F AGK+L++ ++
Sbjct: 60 GRNPRTGEALEIPARTSPKFSAGKSLRDAID 90
>gi|261367126|ref|ZP_05980009.1| DNA-binding protein HU [Subdoligranulum variabile DSM 15176]
gi|282571249|gb|EFB76784.1| DNA-binding protein HU [Subdoligranulum variabile DSM 15176]
Length = 90
Score = 99.8 bits (248), Expect = 1e-19, Method: Composition-based stats.
Identities = 37/90 (41%), Positives = 53/90 (58%), Gaps = 1/90 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K LI +A + L +D E+ VN L +T+AL NG +V + GFG+F VR+R AR
Sbjct: 1 MTKVELIAAVANE-ANLTKKDAEQAVNTALNAITEALKNGDKVTLVGFGTFEVRERPARK 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P I++E +P F+AGK LK+ +
Sbjct: 60 GRNPQTGAEITIEASKLPAFKAGKALKDAV 89
>gi|296157830|ref|ZP_06840664.1| histone family protein DNA-binding protein [Burkholderia sp.
Ch1-1]
gi|295892076|gb|EFG71860.1| histone family protein DNA-binding protein [Burkholderia sp.
Ch1-1]
Length = 90
Score = 99.8 bits (248), Expect = 1e-19, Method: Composition-based stats.
Identities = 32/91 (35%), Positives = 49/91 (53%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI IA++ ++ + ++ ++ + L GG V + GFG+F+V KR AR
Sbjct: 1 MNKTELIDHIAQQ-ADISKAAAGRALDAVIGGVKGTLKQGGSVTLVGFGTFAVGKRTART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P I ++ VP FR GK LK+ LN
Sbjct: 60 GRNPRTGAAIKIKAAKVPKFRPGKALKDALN 90
>gi|256847159|ref|ZP_05552605.1| integration host factor, alpha subunit [Lactobacillus
coleohominis 101-4-CHN]
gi|256715823|gb|EEU30798.1| integration host factor, alpha subunit [Lactobacillus
coleohominis 101-4-CHN]
Length = 91
Score = 99.8 bits (248), Expect = 1e-19, Method: Composition-based stats.
Identities = 30/90 (33%), Positives = 48/90 (53%), Gaps = 1/90 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ L+ +A L +D V+ + + +LA G +V++ GFG+F VR+RAAR
Sbjct: 3 NKAELVSNVASAT-GLTKKDATAAVDAVFSSIQASLAKGEKVQLIGFGNFEVRQRAARKG 61
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + I + VP F+ GK LK+ +
Sbjct: 62 RNPQTGQEIQIPASKVPAFKPGKALKDAVK 91
>gi|116251457|ref|YP_767295.1| DNA-binding protein HU [Rhizobium leguminosarum bv. viciae 3841]
gi|115256105|emb|CAK07186.1| putative DNA-binding protein HU [Rhizobium leguminosarum bv.
viciae 3841]
Length = 91
Score = 99.8 bits (248), Expect = 1e-19, Method: Composition-based stats.
Identities = 31/92 (33%), Positives = 47/92 (51%), Gaps = 1/92 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ L+ +A+K L D V+ + + + L N G + + GFGSF+V RAA
Sbjct: 1 MNKNELVSAVAEK-AGLTKSDAASAVDAVFDVVQAELKNKGDIRLAGFGSFTVSHRAATK 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P + + + VP F GK LK+ +NS
Sbjct: 60 GRNPSTGAEVDIPARNVPKFTPGKGLKDAVNS 91
>gi|71278109|ref|YP_268791.1| HU family DNA-binding protein [Colwellia psychrerythraea 34H]
gi|71143849|gb|AAZ24322.1| DNA-binding protein, HU family [Colwellia psychrerythraea 34H]
Length = 91
Score = 99.8 bits (248), Expect = 1e-19, Method: Composition-based stats.
Identities = 33/91 (36%), Positives = 50/91 (54%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI I++ + + ++ L++ +T LA+GG V + GFG++ V RAAR
Sbjct: 1 MNKSELIAKISE-GADITKASAGRALDSLIDSVTTELASGGDVALVGFGTYKVNDRAART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P I + VP F+AGK LK+ +N
Sbjct: 60 GRNPQTGAEIQISAAKVPAFKAGKALKDAVN 90
>gi|289550748|ref|YP_003471652.1| DNA-binding protein HBsu [Staphylococcus lugdunensis HKU09-01]
gi|289180280|gb|ADC87525.1| DNA-binding protein HBsu [Staphylococcus lugdunensis HKU09-01]
Length = 90
Score = 99.8 bits (248), Expect = 1e-19, Method: Composition-based stats.
Identities = 33/91 (36%), Positives = 52/91 (57%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI +A++ L + V+ + E + +L+ G +V++ GFG+F VR+RAAR
Sbjct: 1 MNKTDLINAVAEQ-ADLTKKQAGSAVDAVFESIQTSLSKGEKVQLIGFGNFEVRERAARK 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P K I + VP F+AGK LK+ +
Sbjct: 60 GRNPQTGKEIEIPASKVPAFKAGKALKDAVK 90
>gi|327405558|ref|YP_004346396.1| histone family protein DNA-binding protein [Fluviicola taffensis
DSM 16823]
gi|327321066|gb|AEA45558.1| histone family protein DNA-binding protein [Fluviicola taffensis
DSM 16823]
Length = 90
Score = 99.8 bits (248), Expect = 1e-19, Method: Composition-based stats.
Identities = 35/91 (38%), Positives = 48/91 (52%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI IA + L+ D +K ++ + AL G R+ + GFGSFSV KR AR
Sbjct: 1 MNKAELIDAIASE-AGLSKADAKKALDAFVGATAGALKKGDRISLVGFGSFSVSKREART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P K I++ K V F+AG L +N
Sbjct: 60 GRNPQTGKEIAIAAKNVVRFKAGAELSGAVN 90
>gi|322420779|ref|YP_004200002.1| histone family protein DNA-binding protein [Geobacter sp. M18]
gi|320127166|gb|ADW14726.1| histone family protein DNA-binding protein [Geobacter sp. M18]
Length = 93
Score = 99.8 bits (248), Expect = 1e-19, Method: Composition-based stats.
Identities = 41/92 (44%), Positives = 63/92 (68%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI + + L +D E +V+M+ + M++AL NG +VEIRGFGSF++R R R
Sbjct: 1 MTKSELIDKLVEVRGALTRKDSEAVVSMVFDAMSEALTNGDKVEIRGFGSFTIRDREPRE 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
AR P + +++S+ K PFF+ GK+L+ER+N+
Sbjct: 61 ARNPKSGEIVSIPSKKTPFFKTGKDLRERVNN 92
>gi|167621360|ref|ZP_02389991.1| Bacterial nucleoid DNA-binding protein [Burkholderia
thailandensis Bt4]
Length = 90
Score = 99.8 bits (248), Expect = 1e-19, Method: Composition-based stats.
Identities = 35/91 (38%), Positives = 48/91 (52%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI +A + L D + +LE +T+AL GG V + GFG FSV RAAR
Sbjct: 1 MNKADLINHVAAET-GLTKADSGFALEAVLEGITKALRKGGTVTLTGFGVFSVGARAART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + I + P F+AGK LK+ +
Sbjct: 60 GRNPATGEEIKIPASKAPKFKAGKGLKDAVK 90
>gi|254000458|ref|YP_003052521.1| histone family protein DNA-binding protein [Methylovorus sp.
SIP3-4]
gi|313202418|ref|YP_004041076.1| histone family protein DNA-binding protein [Methylovorus sp.
MP688]
gi|253987137|gb|ACT51994.1| histone family protein DNA-binding protein [Methylovorus sp.
SIP3-4]
gi|312441734|gb|ADQ85840.1| histone family protein DNA-binding protein [Methylovorus sp.
MP688]
Length = 90
Score = 99.8 bits (248), Expect = 1e-19, Method: Composition-based stats.
Identities = 35/91 (38%), Positives = 49/91 (53%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K LI IA + ++ K+++ +T AL G V + GFG+F+V +RAAR
Sbjct: 1 MNKQELIEEIAT-SAGISKAAAGKVIDAFTSSVTGALKKGDSVTLIGFGTFAVSERAART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P K I + + P FRAGK LK+ LN
Sbjct: 60 GRNPQTGKEIKIAARKAPAFRAGKALKDALN 90
>gi|325274292|ref|ZP_08140403.1| DNA-binding protein HU-beta [Pseudomonas sp. TJI-51]
gi|324100575|gb|EGB98310.1| DNA-binding protein HU-beta [Pseudomonas sp. TJI-51]
Length = 90
Score = 99.8 bits (248), Expect = 1e-19, Method: Composition-based stats.
Identities = 34/91 (37%), Positives = 52/91 (57%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI IA + ++ K ++ +++ +T AL G V + GFG+F+V++RA R
Sbjct: 1 MNKSELIDAIAV-SADISKAAAGKALDAVIDSVTGALKAGDDVVLVGFGTFTVKERAERT 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P K I + VP F+AGK LK+ +N
Sbjct: 60 GRNPQTGKAIKIAAAKVPGFKAGKGLKDAVN 90
>gi|126668934|ref|ZP_01739875.1| Bacterial nucleoid DNA-binding protein [Marinobacter sp. ELB17]
gi|126626597|gb|EAZ97253.1| Bacterial nucleoid DNA-binding protein [Marinobacter sp. ELB17]
Length = 90
Score = 99.8 bits (248), Expect = 1e-19, Method: Composition-based stats.
Identities = 32/91 (35%), Positives = 51/91 (56%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI IA+ + ++ + ++ + +T AL +V + GFG+FSV++RAAR
Sbjct: 1 MNKSELIDAIAE-SADISKAAAGRALDAMTTSITSALKKDDQVTLIGFGTFSVKERAART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P I ++ VP F+AGK LK+ +
Sbjct: 60 GRNPQTGAEIQIKASKVPGFKAGKALKDAVK 90
>gi|254283717|ref|ZP_04958685.1| DNA-binding protein HU [gamma proteobacterium NOR51-B]
gi|219679920|gb|EED36269.1| DNA-binding protein HU [gamma proteobacterium NOR51-B]
Length = 90
Score = 99.8 bits (248), Expect = 1e-19, Method: Composition-based stats.
Identities = 32/91 (35%), Positives = 52/91 (57%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI IA+ + L+ + ++ L +T+AL+ V + GFG+FSV+ RAAR
Sbjct: 1 MNKNDLIDAIAE-DADLSKASAARALDATLSAVTEALSKQDTVSLVGFGTFSVKHRAARE 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + + I ++ P F+ GK LK+ +N
Sbjct: 60 GRNPRSGETIQIKASNNPSFKPGKALKDAVN 90
>gi|283851059|ref|ZP_06368343.1| histone family protein DNA-binding protein [Desulfovibrio sp.
FW1012B]
gi|283573455|gb|EFC21431.1| histone family protein DNA-binding protein [Desulfovibrio sp.
FW1012B]
Length = 90
Score = 99.8 bits (248), Expect = 1e-19, Method: Composition-based stats.
Identities = 31/90 (34%), Positives = 48/90 (53%), Gaps = 1/90 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ L+G IA+K L + E+ +N +E + L G++ + GFG+F V +R AR
Sbjct: 1 MTKADLVGKIAEKT-GLTKANAERALNAFIEAIEATLVGEGKLTLTGFGTFMVDERKART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P I++ V FR GK LK+ +
Sbjct: 60 GRNPRTGTEINIPASKVVKFRPGKLLKDAI 89
>gi|119774364|ref|YP_927104.1| HU family DNA-binding protein [Shewanella amazonensis SB2B]
gi|119766864|gb|ABL99434.1| DNA-binding protein, HU family [Shewanella amazonensis SB2B]
Length = 90
Score = 99.8 bits (248), Expect = 1e-19, Method: Composition-based stats.
Identities = 32/91 (35%), Positives = 52/91 (57%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI IA ++ + ++ + +T+ L +GG++ + GFG+F VR+RA R
Sbjct: 1 MNKSELIEKIA-SGADISKAAAGRALDSFIAAVTEGLKDGGKISLVGFGTFEVRERAERT 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + K I + +P F+AGK LK+ +N
Sbjct: 60 GRNPQSGKEIKIPAAKIPAFKAGKALKDAVN 90
>gi|259503208|ref|ZP_05746110.1| DNA-binding protein HU [Lactobacillus antri DSM 16041]
gi|312869155|ref|ZP_07729329.1| DNA-binding protein HU [Lactobacillus oris PB013-T2-3]
gi|259168865|gb|EEW53360.1| DNA-binding protein HU [Lactobacillus antri DSM 16041]
gi|311095401|gb|EFQ53671.1| DNA-binding protein HU [Lactobacillus oris PB013-T2-3]
Length = 91
Score = 99.8 bits (248), Expect = 1e-19, Method: Composition-based stats.
Identities = 30/90 (33%), Positives = 48/90 (53%), Gaps = 1/90 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ L+ +A L +D V+ + + +LA G +V++ GFG+F VR+RAAR
Sbjct: 3 NKAELVSNVANAT-GLTKKDATAAVDAVFSSIQASLAKGEKVQLIGFGNFEVRQRAARKG 61
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + I + VP F+ GK LK+ +
Sbjct: 62 RNPQTGQEIQIPASKVPAFKPGKALKDAVK 91
>gi|331701407|ref|YP_004398366.1| histone family protein DNA-binding protein [Lactobacillus
buchneri NRRL B-30929]
gi|329128750|gb|AEB73303.1| histone family protein DNA-binding protein [Lactobacillus
buchneri NRRL B-30929]
Length = 91
Score = 99.8 bits (248), Expect = 1e-19, Method: Composition-based stats.
Identities = 31/90 (34%), Positives = 49/90 (54%), Gaps = 1/90 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ L+ +A L +D V+ + E + +LA G +V++ GFG+F VR+RAAR
Sbjct: 3 NKAELVTNVAAAT-GLTKKDATSAVDAVFESIQASLAKGDKVQLIGFGNFEVRQRAARKG 61
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + I + VP F+ GK LK+ +
Sbjct: 62 RNPQTGQEIQIPASKVPAFKPGKALKDAVK 91
>gi|217970426|ref|YP_002355660.1| histone family protein DNA-binding protein [Thauera sp. MZ1T]
gi|217507753|gb|ACK54764.1| histone family protein DNA-binding protein [Thauera sp. MZ1T]
Length = 90
Score = 99.8 bits (248), Expect = 1e-19, Method: Composition-based stats.
Identities = 35/91 (38%), Positives = 51/91 (56%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K L+ +IA+K + D + ++ + +T+AL V + GFGSF V +RAAR
Sbjct: 1 MNKQELVASIAEK-AGMTKADAARALDATVAAVTEALRQDETVTLVGFGSFYVGERAART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P K I ++ VP FRAGK LK+ +N
Sbjct: 60 GRNPRTGKNIKIKAAKVPKFRAGKGLKDSVN 90
>gi|119503318|ref|ZP_01625402.1| DNA-binding protein HU-beta (NS1) (HU-1) [marine gamma
proteobacterium HTCC2080]
gi|119460964|gb|EAW42055.1| DNA-binding protein HU-beta (NS1) (HU-1) [marine gamma
proteobacterium HTCC2080]
Length = 91
Score = 99.8 bits (248), Expect = 1e-19, Method: Composition-based stats.
Identities = 32/92 (34%), Positives = 52/92 (56%), Gaps = 1/92 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ L+ IA++ L+ + ++ + +T AL V + GFG+FSV+ RAAR
Sbjct: 1 MNKNELVDAIAEE-ADLSKASAGRALDAAINAITGALTKQDTVSLVGFGTFSVKHRAARE 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P + + I ++ P F+AGK LK+ +NS
Sbjct: 60 GRNPRSGETIQIKASNAPGFKAGKALKDAVNS 91
>gi|325288394|ref|YP_004264575.1| bacterial nucleoid protein Hbs [Syntrophobotulus glycolicus DSM
8271]
gi|324963795|gb|ADY54574.1| bacterial nucleoid protein Hbs [Syntrophobotulus glycolicus DSM
8271]
Length = 90
Score = 99.8 bits (248), Expect = 1e-19, Method: Composition-based stats.
Identities = 35/90 (38%), Positives = 56/90 (62%), Gaps = 1/90 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ L+ +A+K +D EK V ++E ++QALA G +V++ GFG+F V+KR R+
Sbjct: 1 MNKAELVSAVAEKI-DFTKKDAEKAVAAVIETISQALAAGDKVQLVGFGTFEVKKREERV 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P ++ I + VP F+AGK LK+ +
Sbjct: 60 GRNPQTKEEIIIPACNVPGFKAGKALKDAV 89
>gi|241663131|ref|YP_002981491.1| histone family protein DNA-binding protein [Ralstonia pickettii
12D]
gi|240865158|gb|ACS62819.1| histone family protein DNA-binding protein [Ralstonia pickettii
12D]
Length = 90
Score = 99.8 bits (248), Expect = 1e-19, Method: Composition-based stats.
Identities = 31/91 (34%), Positives = 50/91 (54%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI +A + ++ + ++ L++ + AL GG V + GFG+F V KR++R
Sbjct: 1 MNKTDLIDHVAAQT-DMSKAAAGRAIDALIDGIKDALCEGGSVTLVGFGTFLVGKRSSRN 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P I++E V F+ GK LK+ LN
Sbjct: 60 GRNPRTGAAITIEGGKVAKFKPGKALKDALN 90
>gi|257455234|ref|ZP_05620469.1| DNA-binding protein HU-beta [Enhydrobacter aerosaccus SK60]
gi|257447196|gb|EEV22204.1| DNA-binding protein HU-beta [Enhydrobacter aerosaccus SK60]
Length = 90
Score = 99.8 bits (248), Expect = 1e-19, Method: Composition-based stats.
Identities = 33/91 (36%), Positives = 54/91 (59%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS L+ +IAKK+ L+ + +N + + +A+ V + GFG+FSV++R AR
Sbjct: 1 MNKSELVDSIAKKS-GLSKAQSTEALNAFIATIGEAMKANDTVSLVGFGTFSVKERQART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P ++ I + VP F+AGK+LK+ +N
Sbjct: 60 GRNPQTKEEIQIPASKVPSFKAGKSLKDMVN 90
>gi|322514507|ref|ZP_08067544.1| integration host factor beta subunit [Actinobacillus ureae ATCC
25976]
gi|322119577|gb|EFX91655.1| integration host factor beta subunit [Actinobacillus ureae ATCC
25976]
Length = 93
Score = 99.8 bits (248), Expect = 1e-19, Method: Composition-based stats.
Identities = 42/91 (46%), Positives = 57/91 (62%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI + NP L + VE V LLE++ +L G RVE+RGFGSFS+ R RL
Sbjct: 1 MTKSELIDNLVSLNPTLQVKSVEDGVKELLEQIMLSLEQGERVEVRGFGSFSLHYRQPRL 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + + ++ K VP F+AGK+LKER++
Sbjct: 61 GRNPKTGESVKLDAKYVPHFKAGKDLKERVD 91
>gi|28870878|ref|NP_793497.1| DNA-binding protein HU-beta [Pseudomonas syringae pv. tomato str.
DC3000]
gi|66044995|ref|YP_234836.1| histone-like DNA-binding protein [Pseudomonas syringae pv.
syringae B728a]
gi|71736986|ref|YP_273938.1| DNA-binding protein HU-beta [Pseudomonas syringae pv.
phaseolicola 1448A]
gi|77459916|ref|YP_349423.1| nucleoid protein HU beta subunit [Pseudomonas fluorescens Pf0-1]
gi|213968837|ref|ZP_03396978.1| DNA-binding protein HU, beta subunit [Pseudomonas syringae pv.
tomato T1]
gi|257483812|ref|ZP_05637853.1| nucleoid protein HU beta subunit [Pseudomonas syringae pv. tabaci
ATCC 11528]
gi|289627507|ref|ZP_06460461.1| nucleoid protein HU beta subunit [Pseudomonas syringae pv.
aesculi str. NCPPB3681]
gi|289649942|ref|ZP_06481285.1| nucleoid protein HU beta subunit [Pseudomonas syringae pv.
aesculi str. 2250]
gi|289679418|ref|ZP_06500308.1| nucleoid protein HU beta subunit [Pseudomonas syringae pv.
syringae FF5]
gi|298486266|ref|ZP_07004329.1| DNA-binding protein HU-beta [Pseudomonas savastanoi pv.
savastanoi NCPPB 3335]
gi|301384117|ref|ZP_07232535.1| nucleoid protein HU beta subunit [Pseudomonas syringae pv. tomato
Max13]
gi|302059520|ref|ZP_07251061.1| nucleoid protein HU beta subunit [Pseudomonas syringae pv. tomato
K40]
gi|302135029|ref|ZP_07261019.1| nucleoid protein HU beta subunit [Pseudomonas syringae pv. tomato
NCPPB 1108]
gi|302187981|ref|ZP_07264654.1| nucleoid protein HU beta subunit [Pseudomonas syringae pv.
syringae 642]
gi|330808575|ref|YP_004353037.1| DNA-binding protein, beta subunit [Pseudomonas brassicacearum
subsp. brassicacearum NFM421]
gi|22532107|gb|AAM97839.1|AF447727_1 DNA binding protein HU-beta [Pseudomonas syringae]
gi|28854127|gb|AAO57192.1| DNA-binding protein HU-beta [Pseudomonas syringae pv. tomato str.
DC3000]
gi|63255702|gb|AAY36798.1| Histone-like bacterial DNA-binding protein [Pseudomonas syringae
pv. syringae B728a]
gi|71557539|gb|AAZ36750.1| DNA-binding protein HU-beta [Pseudomonas syringae pv.
phaseolicola 1448A]
gi|77383919|gb|ABA75432.1| DNA-binding protein HU-beta [Pseudomonas fluorescens Pf0-1]
gi|213926440|gb|EEB59994.1| DNA-binding protein HU, beta subunit [Pseudomonas syringae pv.
tomato T1]
gi|298159273|gb|EFI00331.1| DNA-binding protein HU-beta [Pseudomonas savastanoi pv.
savastanoi NCPPB 3335]
gi|320325364|gb|EFW81431.1| nucleoid protein HU beta subunit [Pseudomonas syringae pv.
glycinea str. B076]
gi|320327651|gb|EFW83659.1| nucleoid protein HU beta subunit [Pseudomonas syringae pv.
glycinea str. race 4]
gi|327376683|gb|AEA68033.1| Putative DNA-binding protein, beta subunit [Pseudomonas
brassicacearum subsp. brassicacearum NFM421]
gi|330868372|gb|EGH03081.1| nucleoid protein HU beta subunit [Pseudomonas syringae pv.
aesculi str. 0893_23]
gi|330878775|gb|EGH12924.1| nucleoid protein HU beta subunit [Pseudomonas syringae pv.
morsprunorum str. M302280PT]
gi|330882121|gb|EGH16270.1| nucleoid protein HU beta subunit [Pseudomonas syringae pv.
glycinea str. race 4]
gi|330889994|gb|EGH22655.1| nucleoid protein HU beta subunit [Pseudomonas syringae pv. mori
str. 301020]
gi|330939709|gb|EGH43004.1| nucleoid protein HU beta subunit [Pseudomonas syringae pv. pisi
str. 1704B]
gi|330959390|gb|EGH59650.1| nucleoid protein HU beta subunit [Pseudomonas syringae pv.
maculicola str. ES4326]
gi|330963317|gb|EGH63577.1| nucleoid protein HU beta subunit [Pseudomonas syringae pv.
actinidiae str. M302091]
gi|330972585|gb|EGH72651.1| nucleoid protein HU beta subunit [Pseudomonas syringae pv. aceris
str. M302273PT]
gi|330975099|gb|EGH75165.1| nucleoid protein HU beta subunit [Pseudomonas syringae pv. aptata
str. DSM 50252]
gi|330985642|gb|EGH83745.1| nucleoid protein HU beta subunit [Pseudomonas syringae pv.
lachrymans str. M301315]
gi|331012682|gb|EGH92738.1| nucleoid protein HU beta subunit [Pseudomonas syringae pv. tabaci
ATCC 11528]
gi|331019232|gb|EGH99288.1| nucleoid protein HU beta subunit [Pseudomonas syringae pv.
lachrymans str. M302278PT]
Length = 90
Score = 99.8 bits (248), Expect = 1e-19, Method: Composition-based stats.
Identities = 34/91 (37%), Positives = 49/91 (53%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI IA + + + ++ ++E +T AL G V + GFG+FSV R AR+
Sbjct: 1 MNKSELIDAIAA-SADIPKAAAGRALDAVIESVTGALKAGDSVVLVGFGTFSVTDRPARI 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P K + + P F+AGK LKE +N
Sbjct: 60 GRNPQTGKTLEIAAAKKPGFKAGKALKEAVN 90
>gi|209694401|ref|YP_002262329.1| DNA-binding protein HU-beta [Aliivibrio salmonicida LFI1238]
gi|208008352|emb|CAQ78507.1| DNA-binding protein HU-beta [Aliivibrio salmonicida LFI1238]
Length = 98
Score = 99.5 bits (247), Expect = 1e-19, Method: Composition-based stats.
Identities = 35/90 (38%), Positives = 53/90 (58%), Gaps = 1/90 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
KS L+ IA+ N ++ + ++ L+E +T+ L +G +V + GFGSF VR+RAAR
Sbjct: 10 NKSQLVDQIAE-NADISKAAAGRALDALVETVTETLKSGDQVTLVGFGSFIVRERAARTG 68
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + I + VP F+AGK LK+ N
Sbjct: 69 RNPKTGEAIEISAAKVPAFKAGKALKDACN 98
>gi|330959797|gb|EGH60057.1| putative DNA-binding protein HU [Pseudomonas syringae pv.
maculicola str. ES4326]
Length = 90
Score = 99.5 bits (247), Expect = 1e-19, Method: Composition-based stats.
Identities = 32/90 (35%), Positives = 47/90 (52%), Gaps = 1/90 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K + +A+K L D ++ V+ +LE +T L G V GFG+FSV++ A R
Sbjct: 1 MNKGEFVDAVAEK-AGLTKADTQRAVDAVLETITDTLRKGDAVSFVGFGNFSVKQTAERQ 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P I++ P F AGK+LK+ L
Sbjct: 60 GRNPSTGASITIAAAKKPHFAAGKSLKDAL 89
>gi|313904045|ref|ZP_07837425.1| histone family protein DNA-binding protein [Eubacterium
cellulosolvens 6]
gi|313471194|gb|EFR66516.1| histone family protein DNA-binding protein [Eubacterium
cellulosolvens 6]
Length = 89
Score = 99.5 bits (247), Expect = 1e-19, Method: Composition-based stats.
Identities = 32/90 (35%), Positives = 49/90 (54%), Gaps = 1/90 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ + IA+K +D V+ E +T+AL +G +V GFG++ VR+RAAR
Sbjct: 1 MNKTEFVQKIAEKT-GSTKKDAAAFVDAYAEVITEALKSGDKVAFPGFGTYEVRERAART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P + I + P F+AGK LK+ +
Sbjct: 60 GRNPATGETIQIAASKSPAFKAGKALKDAM 89
>gi|256375007|ref|YP_003098667.1| histone family protein DNA-binding protein [Actinosynnema mirum
DSM 43827]
gi|255919310|gb|ACU34821.1| histone family protein DNA-binding protein [Actinosynnema mirum
DSM 43827]
Length = 90
Score = 99.5 bits (247), Expect = 1e-19, Method: Composition-based stats.
Identities = 31/91 (34%), Positives = 51/91 (56%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ L+ IA+ + + ++ +L+ +T+ALA G V + GFGSF+V++RAAR
Sbjct: 1 MNKAELVSAIAE-GADVEKAVATRALDAVLDSITKALAQGDDVVLTGFGSFTVKERAART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + I + F+ GK LK+ +N
Sbjct: 60 GRNPQTGEAIEIAASKAVGFKVGKALKDAVN 90
>gi|89075365|ref|ZP_01161787.1| putative DNA-binding protein HU-alpha [Photobacterium sp. SKA34]
gi|90581302|ref|ZP_01237099.1| putative DNA-binding protein HU-alpha [Vibrio angustum S14]
gi|89048914|gb|EAR54483.1| putative DNA-binding protein HU-alpha [Photobacterium sp. SKA34]
gi|90437541|gb|EAS62735.1| putative DNA-binding protein HU-alpha [Vibrio angustum S14]
Length = 90
Score = 99.5 bits (247), Expect = 1e-19, Method: Composition-based stats.
Identities = 35/91 (38%), Positives = 49/91 (53%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI IA+K L+ + + L+ +T AL +G +V++ GFG+F V RAAR
Sbjct: 1 MNKTQLIDLIAEK-ADLSKAQAKAALESTLDGITDALKDGDQVQLIGFGTFKVNHRAART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P I + VP F AGK LK+ L
Sbjct: 60 GRNPQTGAEIQIAAANVPAFVAGKALKDALK 90
>gi|227529195|ref|ZP_03959244.1| DNA-binding protein HU [Lactobacillus vaginalis ATCC 49540]
gi|227350920|gb|EEJ41211.1| DNA-binding protein HU [Lactobacillus vaginalis ATCC 49540]
Length = 91
Score = 99.5 bits (247), Expect = 1e-19, Method: Composition-based stats.
Identities = 30/90 (33%), Positives = 48/90 (53%), Gaps = 1/90 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ L+ +A L +D V+ + + +LA G +V++ GFG+F VR+RAAR
Sbjct: 3 NKAELVSNVATAT-GLTKKDATAAVDAVFSSIQASLAKGEKVQLIGFGNFEVRQRAARKG 61
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + I + VP F+ GK LK+ +
Sbjct: 62 RNPQTGQEIQIPASKVPAFKPGKALKDAVK 91
>gi|52842083|ref|YP_095882.1| hypothetical protein lpg1858 [Legionella pneumophila subsp.
pneumophila str. Philadelphia 1]
gi|52629194|gb|AAU27935.1| HupB DNA binding protein HU-beta [Legionella pneumophila subsp.
pneumophila str. Philadelphia 1]
Length = 100
Score = 99.5 bits (247), Expect = 1e-19, Method: Composition-based stats.
Identities = 35/90 (38%), Positives = 47/90 (52%), Gaps = 1/90 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS L+ IA L D +++ + +T L G +V I GFGSFS R+AR
Sbjct: 9 MNKSELVDAIA-SGSGLTKADASRVLETFMATVTDVLKKGDQVVIPGFGSFSTGNRSART 67
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P K I ++ V F+AGKNLKE +
Sbjct: 68 GRNPQTGKTIQIKASRVAKFKAGKNLKEAV 97
>gi|33593555|ref|NP_881199.1| integration host factor subunit alpha [Bordetella pertussis Tohama
I]
gi|81713302|sp|Q7VVR6|IHFA_BORPE RecName: Full=Integration host factor subunit alpha;
Short=IHF-alpha
gi|33572911|emb|CAE42847.1| integration host factor alpha-subunit [Bordetella pertussis Tohama
I]
gi|332382962|gb|AEE67809.1| integration host factor subunit alpha [Bordetella pertussis CS]
Length = 113
Score = 99.5 bits (247), Expect = 1e-19, Method: Composition-based stats.
Identities = 30/94 (31%), Positives = 49/94 (52%), Gaps = 1/94 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ L + ++ LN ++ + IV+ EE+ ALA G V++ GFG+F VR + R
Sbjct: 13 TKAELAELLFER-VGLNKREAKDIVDTFFEEIRDALARGDSVKLSGFGNFQVRDKPPRPG 71
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDS 95
R P + I + + V F A + LK + P+S
Sbjct: 72 RNPKTGETIPIAARRVVTFHASQKLKSVVEQPNS 105
>gi|104774450|ref|YP_619430.1| histone-like DNA-binding protein [Lactobacillus delbrueckii
subsp. bulgaricus ATCC 11842]
gi|116514550|ref|YP_813456.1| nucleoid DNA-binding protein [Lactobacillus delbrueckii subsp.
bulgaricus ATCC BAA-365]
gi|300812638|ref|ZP_07093050.1| DNA-binding protein HU [Lactobacillus delbrueckii subsp.
bulgaricus PB2003/044-T3-4]
gi|21633218|gb|AAM22481.1| HlbB [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842]
gi|103423531|emb|CAI98435.1| Histone-like DNA-binding protein [Lactobacillus delbrueckii
subsp. bulgaricus ATCC 11842]
gi|116093865|gb|ABJ59018.1| bacterial nucleoid protein Hbs [Lactobacillus delbrueckii subsp.
bulgaricus ATCC BAA-365]
gi|300496368|gb|EFK31478.1| DNA-binding protein HU [Lactobacillus delbrueckii subsp.
bulgaricus PB2003/044-T3-4]
gi|325126261|gb|ADY85591.1| HlbB protein [Lactobacillus delbrueckii subsp. bulgaricus 2038]
gi|325685672|gb|EGD27753.1| DNA-binding protein HU [Lactobacillus delbrueckii subsp. lactis
DSM 20072]
Length = 90
Score = 99.5 bits (247), Expect = 1e-19, Method: Composition-based stats.
Identities = 32/91 (35%), Positives = 54/91 (59%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ L+ +++K + + ++ +IV+ L + +ALA G +V++ GFG+F VR+RAAR
Sbjct: 1 MNKTELVSVVSEKT-EFSKKESAQIVDALFASIEEALAKGEKVQLIGFGTFEVRERAARK 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P I + VP F+ GK LK+ +
Sbjct: 60 GRNPQTGAEIEIPASKVPAFKPGKALKDAVK 90
>gi|28378532|ref|NP_785424.1| DNA-binding protein II [Lactobacillus plantarum WCFS1]
gi|254556746|ref|YP_003063163.1| DNA-binding protein II [Lactobacillus plantarum JDM1]
gi|300767478|ref|ZP_07077390.1| DNA-binding protein HU [Lactobacillus plantarum subsp. plantarum
ATCC 14917]
gi|308180690|ref|YP_003924818.1| non-specific DNA-binding protein HBsu [Lactobacillus plantarum
subsp. plantarum ST-III]
gi|28271368|emb|CAD64273.1| DNA-binding protein II [Lactobacillus plantarum WCFS1]
gi|254045673|gb|ACT62466.1| DNA-binding protein II [Lactobacillus plantarum JDM1]
gi|300495297|gb|EFK30453.1| DNA-binding protein HU [Lactobacillus plantarum subsp. plantarum
ATCC 14917]
gi|308046181|gb|ADN98724.1| non-specific DNA-binding protein HBsu [Lactobacillus plantarum
subsp. plantarum ST-III]
Length = 91
Score = 99.5 bits (247), Expect = 1e-19, Method: Composition-based stats.
Identities = 30/90 (33%), Positives = 46/90 (51%), Gaps = 1/90 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ L+ +A L +D V+ + + LA G +V++ GFG+F VR+RAAR
Sbjct: 3 NKAELVNNVAAAT-NLTKKDATAAVDAVFASIQDTLAKGEKVQLIGFGNFEVRERAARKG 61
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P I + VP F+ GK LK+ +
Sbjct: 62 RNPQTGDEIQIPASKVPAFKPGKALKDAVK 91
>gi|312884772|ref|ZP_07744473.1| DNA-binding protein HU-alpha [Vibrio caribbenthicus ATCC
BAA-2122]
gi|309367685|gb|EFP95236.1| DNA-binding protein HU-alpha [Vibrio caribbenthicus ATCC
BAA-2122]
Length = 90
Score = 99.5 bits (247), Expect = 1e-19, Method: Composition-based stats.
Identities = 36/91 (39%), Positives = 50/91 (54%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI IA+K L+ + + L+ +T AL +G +V++ GFG+F V RAAR
Sbjct: 1 MNKTQLIDFIAEK-ADLSKAQAKAALEATLDGVTGALKDGDQVQLIGFGTFKVNHRAART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P I + VP F AGK LKE +N
Sbjct: 60 GRNPKTGAEIQIAAANVPAFVAGKALKESVN 90
>gi|295094507|emb|CBK83598.1| Bacterial nucleoid DNA-binding protein [Coprococcus sp. ART55/1]
Length = 90
Score = 99.5 bits (247), Expect = 1e-19, Method: Composition-based stats.
Identities = 29/91 (31%), Positives = 51/91 (56%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ L+ IA+K +L+ +D E + + + L G ++++ GFG+F V +R AR
Sbjct: 1 MNKTELVAAIAEKT-ELSKKDAEAALKAFTDVVADELKKGEKIQLVGFGTFEVSERPARE 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + +++ P F+AGK LK+ +N
Sbjct: 60 GRNPRTGETMTIAASKAPKFKAGKALKDSIN 90
>gi|269103657|ref|ZP_06156354.1| DNA-binding protein HU-alpha [Photobacterium damselae subsp.
damselae CIP 102761]
gi|268163555|gb|EEZ42051.1| DNA-binding protein HU-alpha [Photobacterium damselae subsp.
damselae CIP 102761]
Length = 90
Score = 99.5 bits (247), Expect = 1e-19, Method: Composition-based stats.
Identities = 34/91 (37%), Positives = 48/91 (52%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI IA+K L+ + + L+ +T AL G +V++ GFG+F V RAAR
Sbjct: 1 MNKTQLIDLIAEK-ADLSKAQAKAALEATLDGITDALKEGDQVQLIGFGTFKVNHRAART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P I + VP F AGK LK+ +
Sbjct: 60 GRNPQTGAEIQIAAANVPAFVAGKALKDSVK 90
>gi|304406950|ref|ZP_07388604.1| histone family protein DNA-binding protein [Paenibacillus
curdlanolyticus YK9]
gi|304343937|gb|EFM09777.1| histone family protein DNA-binding protein [Paenibacillus
curdlanolyticus YK9]
Length = 91
Score = 99.5 bits (247), Expect = 1e-19, Method: Composition-based stats.
Identities = 31/88 (35%), Positives = 53/88 (60%), Gaps = 1/88 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI +A+ +L+ +D K V+ + + ++ AL G +V++ GFG+F VR+R AR
Sbjct: 1 MNKTELIAKVAE-LTELSKKDATKAVDAVFDAISDALQTGDKVQLVGFGNFEVRERQARK 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKE 88
R P + I + +P F+ GK+LK+
Sbjct: 60 GRNPQTGEEIEIAASKMPAFKPGKSLKD 87
>gi|322381185|ref|ZP_08055188.1| non-specific DNA-binding protein Hbsu/signal recognition
particle-like protein [Paenibacillus larvae subsp.
larvae B-3650]
gi|321154761|gb|EFX47032.1| non-specific DNA-binding protein Hbsu/signal recognition
particle-like protein [Paenibacillus larvae subsp.
larvae B-3650]
Length = 90
Score = 99.5 bits (247), Expect = 1e-19, Method: Composition-based stats.
Identities = 39/91 (42%), Positives = 56/91 (61%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K LI IA K+ L +DVE ++N L E+T+AL++G +V++ GFG+F R R+ R
Sbjct: 1 MNKVDLINNIATKS-GLTKKDVETVLNGFLGEVTEALSSGDKVQLIGFGTFETRVRSERT 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P K I++ E VP F+AG LKE +
Sbjct: 60 GRNPQTGKTITIPESKVPAFKAGNKLKEAVK 90
>gi|227892106|ref|ZP_04009911.1| DNA-binding protein HU [Lactobacillus salivarius ATCC 11741]
gi|301300365|ref|ZP_07206569.1| DNA-binding protein HU [Lactobacillus salivarius ACS-116-V-Col5a]
gi|227866089|gb|EEJ73510.1| DNA-binding protein HU [Lactobacillus salivarius ATCC 11741]
gi|300852049|gb|EFK79729.1| DNA-binding protein HU [Lactobacillus salivarius ACS-116-V-Col5a]
Length = 91
Score = 99.5 bits (247), Expect = 1e-19, Method: Composition-based stats.
Identities = 36/92 (39%), Positives = 53/92 (57%), Gaps = 1/92 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ L+ IA+K ++ E V+ E + +AL +G +V+I GFG+F VR+RAAR
Sbjct: 1 MNKNELVEAIAEKM-GTTKKEAEAAVSAFTETVKEALVDGKKVQIIGFGNFEVRERAARK 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P K I + VP F+ GK LK+ +N
Sbjct: 60 GRNPQTGKEIEIPASKVPAFKPGKGLKDAVNK 91
>gi|317486374|ref|ZP_07945202.1| bacterial DNA-binding protein [Bilophila wadsworthia 3_1_6]
gi|316922363|gb|EFV43621.1| bacterial DNA-binding protein [Bilophila wadsworthia 3_1_6]
Length = 91
Score = 99.5 bits (247), Expect = 1e-19, Method: Composition-based stats.
Identities = 39/92 (42%), Positives = 57/92 (61%), Gaps = 1/92 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS L+ +A + ++ + +VN ++ M +L GGRVEIRGFGSF V++ +
Sbjct: 1 MNKSELVKALADQ-ANISLDEATLVVNTFVDSMKDSLLEGGRVEIRGFGSFKVKEYGSYA 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P + ++VE K +PFFRAGK LKE LN+
Sbjct: 60 GRNPRTGEKVAVEPKRLPFFRAGKELKEYLNA 91
>gi|89892939|ref|YP_516426.1| hypothetical protein DSY0193 [Desulfitobacterium hafniense Y51]
gi|219666205|ref|YP_002456640.1| histone family protein DNA-binding protein [Desulfitobacterium
hafniense DCB-2]
gi|89332387|dbj|BAE81982.1| hypothetical protein [Desulfitobacterium hafniense Y51]
gi|219536465|gb|ACL18204.1| histone family protein DNA-binding protein [Desulfitobacterium
hafniense DCB-2]
Length = 91
Score = 99.5 bits (247), Expect = 1e-19, Method: Composition-based stats.
Identities = 33/90 (36%), Positives = 55/90 (61%), Gaps = 1/90 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ L+ +A+K +++ +D EK VN + + +ALA +V++ GFG+F V+ RA R
Sbjct: 1 MNKADLVAAVAEK-AEVSKKDAEKAVNAVFASIEEALAKNEKVQLVGFGTFEVKDRAERT 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P ++ I + VP F+AGK LK+ +
Sbjct: 60 GRNPQTKEAIVIPASKVPGFKAGKALKDAV 89
>gi|15677168|ref|NP_274321.1| integration host factor beta-subunit [Neisseria meningitidis
MC58]
gi|121635014|ref|YP_975259.1| integration host factor beta-subunit [Neisseria meningitidis
FAM18]
gi|218768324|ref|YP_002342836.1| integration host factor subunit beta [Neisseria meningitidis
Z2491]
gi|254805103|ref|YP_003083324.1| integration host factor beta-subunit [Neisseria meningitidis
alpha14]
gi|261400687|ref|ZP_05986812.1| integration host factor, beta subunit [Neisseria lactamica ATCC
23970]
gi|268594993|ref|ZP_06129160.1| integration host factor subunit beta [Neisseria gonorrhoeae
35/02]
gi|268596627|ref|ZP_06130794.1| integration host factor subunit beta [Neisseria gonorrhoeae FA19]
gi|268603907|ref|ZP_06138074.1| integration host factor beta-subunit [Neisseria gonorrhoeae PID1]
gi|268682370|ref|ZP_06149232.1| integration host factor beta-subunit [Neisseria gonorrhoeae
PID332]
gi|268684528|ref|ZP_06151390.1| integration host factor beta-subunit [Neisseria gonorrhoeae
SK-92-679]
gi|293398895|ref|ZP_06643060.1| integration host factor, beta subunit [Neisseria gonorrhoeae F62]
gi|304387392|ref|ZP_07369584.1| integration host factor beta subunit [Neisseria meningitidis ATCC
13091]
gi|313668441|ref|YP_004048725.1| integration host factor beta-subunit [Neisseria lactamica ST-640]
gi|60392449|sp|P0A0U1|IHFB_NEIMA RecName: Full=Integration host factor subunit beta;
Short=IHF-beta
gi|60392450|sp|P0A0U2|IHFB_NEIMB RecName: Full=Integration host factor subunit beta;
Short=IHF-beta
gi|60392451|sp|P0A0U3|IHFB_NEIGO RecName: Full=Integration host factor subunit beta;
Short=IHF-beta
gi|166918555|sp|A1KUD0|IHFB_NEIMF RecName: Full=Integration host factor subunit beta;
Short=IHF-beta
gi|7226542|gb|AAF41677.1| integration host factor, beta subunit [Neisseria meningitidis
MC58]
gi|9965584|gb|AAG10095.1| IfhA [Neisseria gonorrhoeae]
gi|120866720|emb|CAM10473.1| integration host factor beta-subunit [Neisseria meningitidis
FAM18]
gi|121052332|emb|CAM08663.1| integration host factor beta-subunit [Neisseria meningitidis
Z2491]
gi|254668645|emb|CBA06291.1| integration host factor beta-subunit [Neisseria meningitidis
alpha14]
gi|254670493|emb|CBA06219.1| integration host factor beta-subunit [Neisseria meningitidis
alpha153]
gi|254673141|emb|CBA07940.1| integration host factor beta-subunit [Neisseria meningitidis
alpha275]
gi|261392417|emb|CAX49959.1| integration host factor beta-subunit (IHF-beta) [Neisseria
meningitidis 8013]
gi|268548382|gb|EEZ43800.1| integration host factor subunit beta [Neisseria gonorrhoeae
35/02]
gi|268550415|gb|EEZ45434.1| integration host factor subunit beta [Neisseria gonorrhoeae FA19]
gi|268588038|gb|EEZ52714.1| integration host factor beta-subunit [Neisseria gonorrhoeae PID1]
gi|268622654|gb|EEZ55054.1| integration host factor beta-subunit [Neisseria gonorrhoeae
PID332]
gi|268624812|gb|EEZ57212.1| integration host factor beta-subunit [Neisseria gonorrhoeae
SK-92-679]
gi|269209603|gb|EEZ76058.1| integration host factor, beta subunit [Neisseria lactamica ATCC
23970]
gi|291610309|gb|EFF39419.1| integration host factor, beta subunit [Neisseria gonorrhoeae F62]
gi|304338643|gb|EFM04761.1| integration host factor beta subunit [Neisseria meningitidis ATCC
13091]
gi|308389422|gb|ADO31742.1| integration host factor beta-subunit [Neisseria meningitidis
alpha710]
gi|309379233|emb|CBX22190.1| unnamed protein product [Neisseria lactamica Y92-1009]
gi|313005903|emb|CBN87359.1| integration host factor beta-subunit [Neisseria lactamica 020-06]
gi|319410569|emb|CBY90938.1| integration host factor beta-subunit (IHF-beta) [Neisseria
meningitidis WUE 2594]
gi|325128401|gb|EGC51284.1| integration host factor, beta subunit [Neisseria meningitidis
N1568]
gi|325130334|gb|EGC53100.1| integration host factor, beta subunit [Neisseria meningitidis
OX99.30304]
gi|325132497|gb|EGC55190.1| integration host factor, beta subunit [Neisseria meningitidis
M6190]
gi|325134456|gb|EGC57101.1| integration host factor, beta subunit [Neisseria meningitidis
M13399]
gi|325136194|gb|EGC58802.1| integration host factor, beta subunit [Neisseria meningitidis
M0579]
gi|325138271|gb|EGC60840.1| integration host factor, beta subunit [Neisseria meningitidis
ES14902]
gi|325140473|gb|EGC62994.1| integration host factor, beta subunit [Neisseria meningitidis
CU385]
gi|325142525|gb|EGC64926.1| integration host factor, beta subunit [Neisseria meningitidis
961-5945]
gi|325144557|gb|EGC66856.1| integration host factor, beta subunit [Neisseria meningitidis
M01-240013]
gi|325198454|gb|ADY93910.1| integration host factor, beta subunit [Neisseria meningitidis
G2136]
gi|325200072|gb|ADY95527.1| integration host factor, beta subunit [Neisseria meningitidis
H44/76]
gi|325201987|gb|ADY97441.1| integration host factor, beta subunit [Neisseria meningitidis
M01-240149]
gi|325204303|gb|ADY99756.1| integration host factor, beta subunit [Neisseria meningitidis
M01-240355]
gi|325205924|gb|ADZ01377.1| integration host factor, beta subunit [Neisseria meningitidis
M04-240196]
gi|325208262|gb|ADZ03714.1| integration host factor, beta subunit [Neisseria meningitidis
NZ-05/33]
Length = 104
Score = 99.5 bits (247), Expect = 1e-19, Method: Composition-based stats.
Identities = 41/96 (42%), Positives = 59/96 (61%), Gaps = 5/96 (5%)
Query: 1 MIKSSLIGTIAK-----KNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRK 55
M KS L+ +A+ L +DVE V +L++ MT++LA G R+EIRGFGSF +
Sbjct: 1 MTKSELMVRLAEVFAAKNGTHLLAKDVEYSVKVLVDTMTRSLARGQRIEIRGFGSFDLNH 60
Query: 56 RAARLARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R AR+ R P + + V EK VP F+ GK L+ER++
Sbjct: 61 RPARIGRNPKTGERVEVPEKHVPHFKPGKELRERVD 96
>gi|103486291|ref|YP_615852.1| histone-like DNA-binding protein [Sphingopyxis alaskensis RB2256]
gi|98976368|gb|ABF52519.1| histone-like DNA-binding protein [Sphingopyxis alaskensis RB2256]
Length = 90
Score = 99.5 bits (247), Expect = 1e-19, Method: Composition-based stats.
Identities = 33/91 (36%), Positives = 48/91 (52%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K LI +A + L D K V + + +T AL GG V + GFG+F+V KR A
Sbjct: 1 MNKQDLIAAVAD-SSGLTKGDASKAVEAVFDAITGALKKGGEVRLVGFGTFAVSKRKAST 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + +++ P F+AGK LK+ +N
Sbjct: 60 GRNPRTGETMTIAASNQPKFKAGKALKDAVN 90
>gi|95930400|ref|ZP_01313136.1| histone-like DNA-binding protein [Desulfuromonas acetoxidans DSM
684]
gi|95133440|gb|EAT15103.1| histone-like DNA-binding protein [Desulfuromonas acetoxidans DSM
684]
Length = 90
Score = 99.5 bits (247), Expect = 1e-19, Method: Composition-based stats.
Identities = 35/91 (38%), Positives = 55/91 (60%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ L+ IA+K +L+ D EK + ++ +T+AL G ++ + GFG+FSV RAAR+
Sbjct: 1 MTKTELVTAIAEK-AELSKSDSEKALKAFVDTVTEALKGGDKIALVGFGTFSVGDRAARV 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
+ P I + VP F+AGK LK+ +N
Sbjct: 60 GKNPQTGAEIKIPAAKVPKFKAGKALKDAVN 90
>gi|315661119|gb|ADU54569.1| histone-like DNA binding protein [Lactobacillus agilis]
Length = 101
Score = 99.5 bits (247), Expect = 1e-19, Method: Composition-based stats.
Identities = 31/90 (34%), Positives = 48/90 (53%), Gaps = 1/90 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ LI +A+K L +D V+ + + L +G +V++ GFG+F VR+RAAR
Sbjct: 13 NKAQLIENVAEKT-GLTKKDATVAVDAVFGSIQDFLKDGEKVQLIGFGNFEVRERAARKG 71
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P I + VP F+ GK LK+ +
Sbjct: 72 RNPQTGAEIEIPASKVPAFKPGKALKDAVK 101
>gi|18311461|ref|NP_563395.1| DNA-binding protein HU [Clostridium perfringens str. 13]
gi|110801137|ref|YP_697167.1| DNA-binding protein HU [Clostridium perfringens ATCC 13124]
gi|110803022|ref|YP_699735.1| DNA-binding protein HU [Clostridium perfringens SM101]
gi|168213403|ref|ZP_02639028.1| DNA-binding protein HU [Clostridium perfringens CPE str. F4969]
gi|168217596|ref|ZP_02643221.1| DNA-binding protein HU [Clostridium perfringens NCTC 8239]
gi|169343310|ref|ZP_02864320.1| DNA-binding protein HU [Clostridium perfringens C str. JGS1495]
gi|18146145|dbj|BAB82185.1| probable DNA binding protein [Clostridium perfringens str. 13]
gi|110675784|gb|ABG84771.1| DNA-binding protein HU [Clostridium perfringens ATCC 13124]
gi|110683523|gb|ABG86893.1| DNA-binding protein HU [Clostridium perfringens SM101]
gi|169298608|gb|EDS80689.1| DNA-binding protein HU [Clostridium perfringens C str. JGS1495]
gi|170715074|gb|EDT27256.1| DNA-binding protein HU [Clostridium perfringens CPE str. F4969]
gi|182380308|gb|EDT77787.1| DNA-binding protein HU [Clostridium perfringens NCTC 8239]
Length = 91
Score = 99.5 bits (247), Expect = 1e-19, Method: Composition-based stats.
Identities = 35/92 (38%), Positives = 57/92 (61%), Gaps = 1/92 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI ++A+K+ L +D E + +E +++ L NG +V++ GFG+F R RA R
Sbjct: 1 MNKAELITSMAEKS-NLTKKDAELALKAFIESVSETLENGDKVQLVGFGTFETRVRAERE 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P ++VI + + P F+ GK LKER+N+
Sbjct: 60 GRNPRTKEVIKIPASIAPVFKPGKELKERVNA 91
>gi|315641242|ref|ZP_07896319.1| DNA-binding protein HU [Enterococcus italicus DSM 15952]
gi|315483009|gb|EFU73528.1| DNA-binding protein HU [Enterococcus italicus DSM 15952]
Length = 91
Score = 99.5 bits (247), Expect = 1e-19, Method: Composition-based stats.
Identities = 32/90 (35%), Positives = 48/90 (53%), Gaps = 1/90 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ LI +A L +D V+ + + +ALANG +V++ GFG+F VR RA R
Sbjct: 3 NKAELIEKVAAAT-DLTKKDATLAVDAVFSSIQEALANGEKVQLIGFGNFEVRTRAERKG 61
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + I + VP F+ GK LK+ +
Sbjct: 62 RNPQTGEEIKIPASKVPAFKPGKALKDAVK 91
>gi|302035809|ref|YP_003796131.1| integration host factor subunit beta [Candidatus Nitrospira
defluvii]
gi|300603873|emb|CBK40205.1| Integration host factor, beta subunit [Candidatus Nitrospira
defluvii]
Length = 92
Score = 99.5 bits (247), Expect = 1e-19, Method: Composition-based stats.
Identities = 36/92 (39%), Positives = 54/92 (58%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ +I ++++ L + E +VN + + + +L NG + EIRGFGSF +R R +
Sbjct: 1 MTKAQIIERVSEQVTTLTKRQAEIVVNTIFDCIRDSLRNGNKTEIRGFGSFRLRARRMKE 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P ++V K VPFF+AGK LKE LN
Sbjct: 61 GRNPKTGATVAVPAKRVPFFKAGKELKELLNK 92
>gi|295426287|ref|ZP_06818947.1| DNA-binding protein HU [Lactobacillus amylolyticus DSM 11664]
gi|295064026|gb|EFG54974.1| DNA-binding protein HU [Lactobacillus amylolyticus DSM 11664]
Length = 117
Score = 99.5 bits (247), Expect = 1e-19, Method: Composition-based stats.
Identities = 31/90 (34%), Positives = 46/90 (51%), Gaps = 1/90 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ L+ +A K L ++V V L + + L+ G +V++ GFG+F VR RAAR
Sbjct: 29 NKAELVSEVASKT-DLTKKEVAAAVEALFSSIQENLSKGNKVQLIGFGTFEVRHRAARKG 87
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P I + VP F+ GK LK +
Sbjct: 88 RNPQTGAEIQIPASEVPAFKPGKALKYAVK 117
>gi|121535091|ref|ZP_01666908.1| histone family protein DNA-binding protein [Thermosinus
carboxydivorans Nor1]
gi|121306341|gb|EAX47266.1| histone family protein DNA-binding protein [Thermosinus
carboxydivorans Nor1]
Length = 91
Score = 99.5 bits (247), Expect = 1e-19, Method: Composition-based stats.
Identities = 36/92 (39%), Positives = 53/92 (57%), Gaps = 1/92 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI ++A+K + +D EK +N + + +ALA +V+I GFG+F VR R AR
Sbjct: 1 MNKTELIASVAEK-AGMTKKDAEKALNAVFASIEEALAQNDKVQIIGFGTFEVRTREARK 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P K I + P F+AGK LK+ +N
Sbjct: 60 GRNPQTGKEIDIPASKSPVFKAGKGLKDAVNK 91
>gi|253681243|ref|ZP_04862041.1| DNA-binding protein HU [Clostridium botulinum D str. 1873]
gi|253562481|gb|EES91932.1| DNA-binding protein HU [Clostridium botulinum D str. 1873]
Length = 92
Score = 99.5 bits (247), Expect = 2e-19, Method: Composition-based stats.
Identities = 34/93 (36%), Positives = 58/93 (62%), Gaps = 1/93 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI ++A+K+ +L +D E + +E + +AL +G +V++ GFG+F R+RA R
Sbjct: 1 MNKAELITSMAEKS-QLTKKDAEVALRAFIESVEEALMDGDKVQLVGFGTFETRERAERK 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSP 93
R P ++ I++ VP F+AGK KE +N+
Sbjct: 60 GRNPRTKEEITIPAATVPVFKAGKEFKEIVNNK 92
>gi|303245326|ref|ZP_07331610.1| histone family protein DNA-binding protein [Desulfovibrio
fructosovorans JJ]
gi|302493175|gb|EFL53037.1| histone family protein DNA-binding protein [Desulfovibrio
fructosovorans JJ]
Length = 90
Score = 99.5 bits (247), Expect = 2e-19, Method: Composition-based stats.
Identities = 31/90 (34%), Positives = 48/90 (53%), Gaps = 1/90 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ L+G IA+K L + E+ +N +E + L G++ + GFG+F V +R AR
Sbjct: 1 MTKADLVGKIAEKT-GLTKANAERALNAFIEAIEATLVGEGKITLTGFGTFMVDERKART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P I++ V FR GK LK+ +
Sbjct: 60 GRNPRTGAEINIPASKVVKFRPGKLLKDAI 89
>gi|91774372|ref|YP_544128.1| nucleoid protein HU beta subunit [Methylobacillus flagellatus KT]
gi|91708359|gb|ABE48287.1| bacterial nucleoid protein HU beta subunit [Methylobacillus
flagellatus KT]
Length = 90
Score = 99.5 bits (247), Expect = 2e-19, Method: Composition-based stats.
Identities = 36/91 (39%), Positives = 50/91 (54%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI IAK+ ++ K V+ +T AL +G V + GFG+F V +RAAR
Sbjct: 1 MNKTELIEEIAKE-AGISKAAAGKAVDAFTASVTAALKSGDTVTLIGFGTFGVSERAART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P K I + + P F+AGK LK+ LN
Sbjct: 60 GRNPQTGKEIKIAARKAPSFKAGKALKDALN 90
>gi|197119620|ref|YP_002140047.1| integration host factor subunit beta [Geobacter bemidjiensis Bem]
gi|253699630|ref|YP_003020819.1| histone family protein DNA-binding protein [Geobacter sp. M21]
gi|197088980|gb|ACH40251.1| integration host factor, beta subunit [Geobacter bemidjiensis
Bem]
gi|251774480|gb|ACT17061.1| histone family protein DNA-binding protein [Geobacter sp. M21]
Length = 93
Score = 99.5 bits (247), Expect = 2e-19, Method: Composition-based stats.
Identities = 41/92 (44%), Positives = 63/92 (68%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI + + L +D E +V+M+ + M++AL NG +VEIRGFGSF++R R R
Sbjct: 1 MTKSELIDKLVEVRGVLTRKDSEAVVSMVFDAMSEALTNGDKVEIRGFGSFTIRDREPRE 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
AR P + +++S+ K PFF+ GK+L+ER+N+
Sbjct: 61 ARNPKSGEIVSIPSKKTPFFKTGKDLRERVNN 92
>gi|91228710|ref|ZP_01262623.1| bacterial nucleoid DNA-binding protein [Vibrio alginolyticus
12G01]
gi|262392956|ref|YP_003284810.1| DNA-binding protein HU-alpha [Vibrio sp. Ex25]
gi|269965869|ref|ZP_06179963.1| DNA-binding protein HU [Vibrio alginolyticus 40B]
gi|91187736|gb|EAS74055.1| bacterial nucleoid DNA-binding protein [Vibrio alginolyticus
12G01]
gi|262336550|gb|ACY50345.1| DNA-binding protein HU-alpha [Vibrio sp. Ex25]
gi|269829533|gb|EEZ83773.1| DNA-binding protein HU [Vibrio alginolyticus 40B]
Length = 90
Score = 99.5 bits (247), Expect = 2e-19, Method: Composition-based stats.
Identities = 36/91 (39%), Positives = 49/91 (53%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI IA+K L+ + + L+ +T AL G +V++ GFG+F V RAAR
Sbjct: 1 MNKTQLIDFIAEK-ADLSKAQAKAALEATLDGVTGALKEGDQVQLIGFGTFKVNHRAART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P I + VP F AGK LKE +N
Sbjct: 60 GRNPKTGDEIQIAAANVPAFVAGKALKESVN 90
>gi|294507387|ref|YP_003571445.1| Histone-like bacterial DNA-binding protein [Salinibacter ruber M8]
gi|294343715|emb|CBH24493.1| Histone-like bacterial DNA-binding protein [Salinibacter ruber M8]
Length = 100
Score = 99.5 bits (247), Expect = 2e-19, Method: Composition-based stats.
Identities = 29/99 (29%), Positives = 45/99 (45%), Gaps = 1/99 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI IA L + +V + + A+ G R+E+R FG F V+ RA R
Sbjct: 3 MTKADLIDQIAD-GTGLTKIETRAVVEGFMTAVRGAMKEGRRIELREFGVFEVQHRAPRT 61
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDSTLSN 99
R P + + +E++ P FR L E +N+
Sbjct: 62 GRNPQTNEPVEIEDRYKPVFRPSDKLSEAVNAAHKADEE 100
>gi|326692493|ref|ZP_08229498.1| nucleoid DNA-binding protein [Leuconostoc argentinum KCTC 3773]
Length = 91
Score = 99.5 bits (247), Expect = 2e-19, Method: Composition-based stats.
Identities = 33/90 (36%), Positives = 48/90 (53%), Gaps = 1/90 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K L+ ++AK L +D V+ + + +AL NG +V++ GFG+F VR RAAR
Sbjct: 3 NKQELVDSVAKAT-GLTKKDATAAVDAVFTSIEEALKNGEKVQLIGFGNFEVRDRAARKG 61
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P I + VP F+ GK LKE +
Sbjct: 62 RNPQTGAEIEIPASKVPAFKPGKALKEAVK 91
>gi|298528590|ref|ZP_07015994.1| histone family protein DNA-binding protein [Desulfonatronospira
thiodismutans ASO3-1]
gi|298512242|gb|EFI36144.1| histone family protein DNA-binding protein [Desulfonatronospira
thiodismutans ASO3-1]
Length = 90
Score = 99.5 bits (247), Expect = 2e-19, Method: Composition-based stats.
Identities = 28/90 (31%), Positives = 52/90 (57%), Gaps = 1/90 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K ++ ++A+K+ + D +K ++ + + +++ L NG +V + GFG+F+V +R R
Sbjct: 1 MNKKQMVDSLAQKS-GMTKADAQKALDGVEDIISEQLKNGDQVALPGFGTFTVAERKPRT 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P I++ VP F+ GK LKE +
Sbjct: 60 GRNPQTGAEINIPAARVPKFKPGKKLKEAV 89
>gi|167566113|ref|ZP_02359029.1| histone family protein DNA-binding protein [Burkholderia
oklahomensis EO147]
Length = 92
Score = 99.5 bits (247), Expect = 2e-19, Method: Composition-based stats.
Identities = 29/92 (31%), Positives = 47/92 (51%), Gaps = 1/92 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K LI +A ++ D K V +L+ +T A++ V++ GFG+FS +R+AR
Sbjct: 1 MNKQELIDAVAA-GAGVSKSDASKTVQAVLDAITDAVSRDEAVQLVGFGAFSRGQRSART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P + I++ F AGK K+ +N
Sbjct: 60 GRNPTTGEEIAIAAANTVKFTAGKAFKDAVNE 91
>gi|29376113|ref|NP_815267.1| DNA-binding protein HU [Enterococcus faecalis V583]
gi|227518741|ref|ZP_03948790.1| DNA-binding protein HU [Enterococcus faecalis TX0104]
gi|227553351|ref|ZP_03983400.1| DNA-binding protein HU [Enterococcus faecalis HH22]
gi|229545834|ref|ZP_04434559.1| DNA-binding protein HU [Enterococcus faecalis TX1322]
gi|229550026|ref|ZP_04438751.1| DNA-binding protein HU [Enterococcus faecalis ATCC 29200]
gi|255972807|ref|ZP_05423393.1| DNA-binding protein II [Enterococcus faecalis T1]
gi|255975863|ref|ZP_05426449.1| DNA-binding protein II [Enterococcus faecalis T2]
gi|256619053|ref|ZP_05475899.1| DNA-binding protein II [Enterococcus faecalis ATCC 4200]
gi|256762479|ref|ZP_05503059.1| DNA-binding protein II [Enterococcus faecalis T3]
gi|256853115|ref|ZP_05558485.1| DNA-binding protein HU [Enterococcus faecalis T8]
gi|256958970|ref|ZP_05563141.1| DNA-binding protein II [Enterococcus faecalis DS5]
gi|256961937|ref|ZP_05566108.1| DNA-binding protein II [Enterococcus faecalis Merz96]
gi|256965135|ref|ZP_05569306.1| DNA-binding protein II [Enterococcus faecalis HIP11704]
gi|257079001|ref|ZP_05573362.1| DNA-binding protein II [Enterococcus faecalis JH1]
gi|257082560|ref|ZP_05576921.1| DNA-binding protein II [Enterococcus faecalis E1Sol]
gi|257085193|ref|ZP_05579554.1| DNA-binding protein II [Enterococcus faecalis Fly1]
gi|257086754|ref|ZP_05581115.1| DNA-binding protein II [Enterococcus faecalis D6]
gi|257089875|ref|ZP_05584236.1| DNA-binding protein HU [Enterococcus faecalis CH188]
gi|257416083|ref|ZP_05593077.1| DNA-binding protein II [Enterococcus faecalis AR01/DG]
gi|257419286|ref|ZP_05596280.1| DNA-binding protein [Enterococcus faecalis T11]
gi|257422629|ref|ZP_05599619.1| DNA-binding protein HU [Enterococcus faecalis X98]
gi|293383005|ref|ZP_06628923.1| DNA-binding protein HU [Enterococcus faecalis R712]
gi|293389506|ref|ZP_06633963.1| DNA-binding protein HU [Enterococcus faecalis S613]
gi|294781353|ref|ZP_06746696.1| DNA-binding protein HU [Enterococcus faecalis PC1.1]
gi|300860723|ref|ZP_07106810.1| DNA-binding protein HU [Enterococcus faecalis TUSoD Ef11]
gi|307271028|ref|ZP_07552311.1| DNA-binding protein HU [Enterococcus faecalis TX4248]
gi|307273235|ref|ZP_07554481.1| DNA-binding protein HU [Enterococcus faecalis TX0855]
gi|307274972|ref|ZP_07556135.1| DNA-binding protein HU [Enterococcus faecalis TX2134]
gi|307278084|ref|ZP_07559168.1| DNA-binding protein HU [Enterococcus faecalis TX0860]
gi|307289095|ref|ZP_07569051.1| DNA-binding protein HU [Enterococcus faecalis TX0109]
gi|307292006|ref|ZP_07571875.1| DNA-binding protein HU [Enterococcus faecalis TX0411]
gi|312900750|ref|ZP_07760047.1| DNA-binding protein HU [Enterococcus faecalis TX0470]
gi|312903297|ref|ZP_07762477.1| DNA-binding protein HU [Enterococcus faecalis TX0635]
gi|312907524|ref|ZP_07766515.1| DNA-binding protein HU [Enterococcus faecalis DAPTO 512]
gi|312910142|ref|ZP_07768989.1| DNA-binding protein HU [Enterococcus faecalis DAPTO 516]
gi|312951483|ref|ZP_07770379.1| DNA-binding protein HU [Enterococcus faecalis TX0102]
gi|29343575|gb|AAO81337.1| DNA-binding protein HU [Enterococcus faecalis V583]
gi|227073822|gb|EEI11785.1| DNA-binding protein HU [Enterococcus faecalis TX0104]
gi|227177520|gb|EEI58492.1| DNA-binding protein HU [Enterococcus faecalis HH22]
gi|229304832|gb|EEN70828.1| DNA-binding protein HU [Enterococcus faecalis ATCC 29200]
gi|229309033|gb|EEN75020.1| DNA-binding protein HU [Enterococcus faecalis TX1322]
gi|255963825|gb|EET96301.1| DNA-binding protein II [Enterococcus faecalis T1]
gi|255968735|gb|EET99357.1| DNA-binding protein II [Enterococcus faecalis T2]
gi|256598580|gb|EEU17756.1| DNA-binding protein II [Enterococcus faecalis ATCC 4200]
gi|256683730|gb|EEU23425.1| DNA-binding protein II [Enterococcus faecalis T3]
gi|256711574|gb|EEU26612.1| DNA-binding protein HU [Enterococcus faecalis T8]
gi|256949466|gb|EEU66098.1| DNA-binding protein II [Enterococcus faecalis DS5]
gi|256952433|gb|EEU69065.1| DNA-binding protein II [Enterococcus faecalis Merz96]
gi|256955631|gb|EEU72263.1| DNA-binding protein II [Enterococcus faecalis HIP11704]
gi|256987031|gb|EEU74333.1| DNA-binding protein II [Enterococcus faecalis JH1]
gi|256990590|gb|EEU77892.1| DNA-binding protein II [Enterococcus faecalis E1Sol]
gi|256993223|gb|EEU80525.1| DNA-binding protein II [Enterococcus faecalis Fly1]
gi|256994784|gb|EEU82086.1| DNA-binding protein II [Enterococcus faecalis D6]
gi|256998687|gb|EEU85207.1| DNA-binding protein HU [Enterococcus faecalis CH188]
gi|257157911|gb|EEU87871.1| DNA-binding protein II [Enterococcus faecalis ARO1/DG]
gi|257161114|gb|EEU91074.1| DNA-binding protein [Enterococcus faecalis T11]
gi|257164453|gb|EEU94413.1| DNA-binding protein HU [Enterococcus faecalis X98]
gi|291079670|gb|EFE17034.1| DNA-binding protein HU [Enterococcus faecalis R712]
gi|291081123|gb|EFE18086.1| DNA-binding protein HU [Enterococcus faecalis S613]
gi|294451583|gb|EFG20042.1| DNA-binding protein HU [Enterococcus faecalis PC1.1]
gi|295112974|emb|CBL31611.1| bacterial nucleoid protein Hbs [Enterococcus sp. 7L76]
gi|300849762|gb|EFK77512.1| DNA-binding protein HU [Enterococcus faecalis TUSoD Ef11]
gi|306497004|gb|EFM66552.1| DNA-binding protein HU [Enterococcus faecalis TX0411]
gi|306499804|gb|EFM69165.1| DNA-binding protein HU [Enterococcus faecalis TX0109]
gi|306505481|gb|EFM74667.1| DNA-binding protein HU [Enterococcus faecalis TX0860]
gi|306508420|gb|EFM77527.1| DNA-binding protein HU [Enterococcus faecalis TX2134]
gi|306510220|gb|EFM79244.1| DNA-binding protein HU [Enterococcus faecalis TX0855]
gi|306512526|gb|EFM81175.1| DNA-binding protein HU [Enterococcus faecalis TX4248]
gi|310626552|gb|EFQ09835.1| DNA-binding protein HU [Enterococcus faecalis DAPTO 512]
gi|310630449|gb|EFQ13732.1| DNA-binding protein HU [Enterococcus faecalis TX0102]
gi|310633173|gb|EFQ16456.1| DNA-binding protein HU [Enterococcus faecalis TX0635]
gi|311289415|gb|EFQ67971.1| DNA-binding protein HU [Enterococcus faecalis DAPTO 516]
gi|311292231|gb|EFQ70787.1| DNA-binding protein HU [Enterococcus faecalis TX0470]
gi|315027276|gb|EFT39208.1| DNA-binding protein HU [Enterococcus faecalis TX2137]
gi|315029395|gb|EFT41327.1| DNA-binding protein HU [Enterococcus faecalis TX4000]
gi|315033959|gb|EFT45891.1| DNA-binding protein HU [Enterococcus faecalis TX0017]
gi|315036968|gb|EFT48900.1| DNA-binding protein HU [Enterococcus faecalis TX0027]
gi|315144427|gb|EFT88443.1| DNA-binding protein HU [Enterococcus faecalis TX2141]
gi|315147254|gb|EFT91270.1| DNA-binding protein HU [Enterococcus faecalis TX4244]
gi|315150547|gb|EFT94563.1| DNA-binding protein HU [Enterococcus faecalis TX0012]
gi|315152494|gb|EFT96510.1| DNA-binding protein HU [Enterococcus faecalis TX0031]
gi|315155772|gb|EFT99788.1| DNA-binding protein HU [Enterococcus faecalis TX0043]
gi|315158061|gb|EFU02078.1| DNA-binding protein HU [Enterococcus faecalis TX0312]
gi|315160455|gb|EFU04472.1| DNA-binding protein HU [Enterococcus faecalis TX0645]
gi|315164004|gb|EFU08021.1| DNA-binding protein HU [Enterococcus faecalis TX1302]
gi|315169045|gb|EFU13062.1| DNA-binding protein HU [Enterococcus faecalis TX1341]
gi|315169717|gb|EFU13734.1| DNA-binding protein HU [Enterococcus faecalis TX1342]
gi|315172322|gb|EFU16339.1| DNA-binding protein HU [Enterococcus faecalis TX1346]
gi|315575877|gb|EFU88068.1| DNA-binding protein HU [Enterococcus faecalis TX0309B]
gi|315577717|gb|EFU89908.1| DNA-binding protein HU [Enterococcus faecalis TX0630]
gi|315580529|gb|EFU92720.1| DNA-binding protein HU [Enterococcus faecalis TX0309A]
gi|323480713|gb|ADX80152.1| DNA-binding protein HU 1 [Enterococcus faecalis 62]
gi|327535122|gb|AEA93956.1| DNA-binding protein HU [Enterococcus faecalis OG1RF]
gi|329571713|gb|EGG53394.1| DNA-binding protein HU-beta [Enterococcus faecalis TX1467]
Length = 91
Score = 99.5 bits (247), Expect = 2e-19, Method: Composition-based stats.
Identities = 31/90 (34%), Positives = 48/90 (53%), Gaps = 1/90 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ LI +A L +D V+ + + + LA G +V++ GFG+F VR+RAAR
Sbjct: 3 NKAELIENVASST-GLTKKDATAAVDAVFSTIQETLAKGEKVQLIGFGNFEVRERAARKG 61
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + I + VP F+ GK LK+ +
Sbjct: 62 RNPQTGQEIQIAASKVPAFKPGKALKDAVK 91
>gi|282600358|ref|ZP_05974005.2| DNA-binding protein HU-beta [Providencia rustigianii DSM 4541]
gi|282565675|gb|EFB71210.1| DNA-binding protein HU-beta [Providencia rustigianii DSM 4541]
Length = 96
Score = 99.1 bits (246), Expect = 2e-19, Method: Composition-based stats.
Identities = 36/90 (40%), Positives = 52/90 (57%), Gaps = 1/90 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
KS LI +A + ++ ++V+ + +T +L G V + GFG+FSVRKRAAR+
Sbjct: 7 NKSQLIEKVASE-ANISKAAAGRVVDAFVASVTGSLKKGDDVTLVGFGTFSVRKRAARIG 65
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P K I + VP FRAGK LK+ +N
Sbjct: 66 RNPQTGKEIKIAAATVPAFRAGKGLKDAVN 95
>gi|323498789|ref|ZP_08103775.1| nucleoid DNA-binding protein [Vibrio sinaloensis DSM 21326]
gi|323316151|gb|EGA69176.1| nucleoid DNA-binding protein [Vibrio sinaloensis DSM 21326]
Length = 90
Score = 99.1 bits (246), Expect = 2e-19, Method: Composition-based stats.
Identities = 34/91 (37%), Positives = 49/91 (53%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI IA+K L+ + + L+ +T AL G +V++ GFG+F V RAAR
Sbjct: 1 MNKTQLIDFIAEK-ADLSKAQAKAALEATLDGVTDALKEGDQVQLIGFGTFKVNHRAART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + I + VP F AGK LK+ +
Sbjct: 60 GRNPKTGEEIQIAAANVPAFVAGKALKDAVK 90
>gi|323705550|ref|ZP_08117124.1| histone family protein DNA-binding protein [Thermoanaerobacterium
xylanolyticum LX-11]
gi|323535027|gb|EGB24804.1| histone family protein DNA-binding protein [Thermoanaerobacterium
xylanolyticum LX-11]
Length = 92
Score = 99.1 bits (246), Expect = 2e-19, Method: Composition-based stats.
Identities = 34/91 (37%), Positives = 58/91 (63%), Gaps = 1/91 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ L+ IA+K+ +L +D EK +N ++ + +AL G +V++ GFG+F VR+RA R
Sbjct: 3 NKADLVTKIAEKS-ELTKKDAEKALNAFVDAVQEALKQGDKVQLVGFGTFEVRERAERKG 61
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P ++ I++ P F+AGK LK+ +N+
Sbjct: 62 RNPQTKEEITIPASKAPVFKAGKALKDLVNA 92
>gi|225075294|ref|ZP_03718493.1| hypothetical protein NEIFLAOT_00297 [Neisseria flavescens
NRL30031/H210]
gi|224953469|gb|EEG34678.1| hypothetical protein NEIFLAOT_00297 [Neisseria flavescens
NRL30031/H210]
Length = 109
Score = 99.1 bits (246), Expect = 2e-19, Method: Composition-based stats.
Identities = 32/89 (35%), Positives = 48/89 (53%), Gaps = 1/89 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
KS LI IA++ ++ +K ++ +T AL NG V + GFG+F V +RA R
Sbjct: 22 NKSELIEAIAQE-AGISKSAAQKALDATTNAVTNALKNGDTVTLVGFGTFYVGERAERQG 80
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P + +++ P FRAGK LK+ L
Sbjct: 81 RNPKTGEPLTIAAAKTPKFRAGKALKDAL 109
>gi|33597181|ref|NP_884824.1| integration host factor subunit alpha [Bordetella parapertussis
12822]
gi|33601025|ref|NP_888585.1| integration host factor subunit alpha [Bordetella bronchiseptica
RB50]
gi|81713742|sp|Q7W7C5|IHFA_BORPA RecName: Full=Integration host factor subunit alpha;
Short=IHF-alpha
gi|81714215|sp|Q7WKR3|IHFA_BORBR RecName: Full=Integration host factor subunit alpha;
Short=IHF-alpha
gi|33573608|emb|CAE37892.1| integration host factor alpha-subunit [Bordetella parapertussis]
gi|33575460|emb|CAE32538.1| integration host factor alpha-subunit [Bordetella bronchiseptica
RB50]
Length = 113
Score = 99.1 bits (246), Expect = 2e-19, Method: Composition-based stats.
Identities = 30/94 (31%), Positives = 48/94 (51%), Gaps = 1/94 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ L + ++ LN ++ + IV+ EE+ ALA G V++ GFG+F VR + R
Sbjct: 13 TKAELAELLFER-VGLNKREAKDIVDTFFEEIRDALARGDSVKLSGFGNFQVRDKPPRPG 71
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDS 95
R P + I + + V F A + LK + P S
Sbjct: 72 RNPKTGETIPIAARRVVTFHASQKLKSVVEQPSS 105
>gi|193214421|ref|YP_001995620.1| histone family protein DNA-binding protein [Chloroherpeton
thalassium ATCC 35110]
gi|193087898|gb|ACF13173.1| histone family protein DNA-binding protein [Chloroherpeton
thalassium ATCC 35110]
Length = 93
Score = 99.1 bits (246), Expect = 2e-19, Method: Composition-based stats.
Identities = 29/90 (32%), Positives = 50/90 (55%), Gaps = 1/90 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ L+ IA ++ L D E+ +N ++ ++ AL +G V + GFG+F+V R+ R
Sbjct: 1 MTKADLVEKIAAES-GLTKADSERALNAFVKTVSAALKSGDSVTLVGFGTFTVMDRSERE 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P + +++ K VP F+ G LK +
Sbjct: 60 GRNPKTGESMTIAAKKVPKFKPGATLKNEV 89
>gi|255282032|ref|ZP_05346587.1| DNA-binding protein HU [Bryantella formatexigens DSM 14469]
gi|255267351|gb|EET60556.1| DNA-binding protein HU [Bryantella formatexigens DSM 14469]
Length = 91
Score = 99.1 bits (246), Expect = 2e-19, Method: Composition-based stats.
Identities = 35/92 (38%), Positives = 55/92 (59%), Gaps = 1/92 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI IAK+ +L+ +D E V + +T L G +V++ GFG+F V +RAAR
Sbjct: 1 MNKTELIAAIAKET-ELSKKDAELAVKAFTDVVTAELKKGEKVQLVGFGTFEVSERAARE 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P + +S++ P F+AGK LK+ +N+
Sbjct: 60 GRNPQTGESMSIQASKTPKFKAGKALKDAVNN 91
>gi|315924899|ref|ZP_07921116.1| DNA-binding protein HU [Pseudoramibacter alactolyticus ATCC
23263]
gi|315621798|gb|EFV01762.1| DNA-binding protein HU [Pseudoramibacter alactolyticus ATCC
23263]
Length = 91
Score = 99.1 bits (246), Expect = 2e-19, Method: Composition-based stats.
Identities = 33/92 (35%), Positives = 50/92 (54%), Gaps = 1/92 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS L+ +A+K L +D EK + + + + L G +V + GFG+F VR RAAR
Sbjct: 1 MNKSELVAAMAEKT-GLPKKDAEKALTAFTDTIVETLQKGDKVSLVGFGTFDVRHRAARQ 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
P ++ I ++ P F+AGK K+ LN
Sbjct: 60 GLNPRTKEPIEIKASDAPAFKAGKAFKDALNK 91
>gi|260596812|ref|YP_003209383.1| DNA-binding protein HU-beta [Cronobacter turicensis z3032]
gi|260215989|emb|CBA28644.1| DNA-binding protein HU-beta [Cronobacter turicensis z3032]
Length = 113
Score = 99.1 bits (246), Expect = 2e-19, Method: Composition-based stats.
Identities = 35/90 (38%), Positives = 54/90 (60%), Gaps = 1/90 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
KS LI IA ++ + ++ L++ +T++L +G V + GFG+F+VR+RAAR
Sbjct: 25 NKSQLIDKIAA-GADISKAAAGRALDALIDSVTESLQSGDEVALVGFGTFAVRERAARTG 83
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P K I++ VP FRAGK LK+ +N
Sbjct: 84 RNPQTGKEITIAAAKVPGFRAGKALKDAVN 113
>gi|266619816|ref|ZP_06112751.1| DNA-binding protein HU [Clostridium hathewayi DSM 13479]
gi|288868604|gb|EFD00903.1| DNA-binding protein HU [Clostridium hathewayi DSM 13479]
Length = 91
Score = 99.1 bits (246), Expect = 2e-19, Method: Composition-based stats.
Identities = 35/92 (38%), Positives = 60/92 (65%), Gaps = 1/92 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI +A+K +L+ +D EK V + +++ L NGG++++ GFG+F V +RAAR
Sbjct: 1 MNKTELIAAVAEK-AELSKKDAEKAVKAFTDVVSEELVNGGKIQLVGFGTFEVSERAARE 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P + +V+++ P F+AGK LK+ +N+
Sbjct: 60 GRNPKSGEVMNIPASKTPKFKAGKALKDMVNA 91
>gi|260878351|ref|ZP_05890706.1| DNA-binding protein HU-beta [Vibrio parahaemolyticus AN-5034]
gi|308092754|gb|EFO42449.1| DNA-binding protein HU-beta [Vibrio parahaemolyticus AN-5034]
Length = 86
Score = 99.1 bits (246), Expect = 2e-19, Method: Composition-based stats.
Identities = 32/87 (36%), Positives = 50/87 (57%), Gaps = 1/87 (1%)
Query: 5 SLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLARAP 64
L+ IA+ N ++ + ++ +E ++ L +G +V + GFG+FSVR RAAR R P
Sbjct: 1 QLVEQIAE-NADISKASAGRALDAFIEAVSGTLQSGDQVALVGFGTFSVRTRAARTGRNP 59
Query: 65 LAQKVISVEEKMVPFFRAGKNLKERLN 91
+ I + E VP F+AGK LK+ N
Sbjct: 60 KTGEEIQIAEAKVPAFKAGKALKDACN 86
>gi|254467848|ref|ZP_05081254.1| integration host factor, beta subunit [beta proteobacterium KB13]
gi|207086658|gb|EDZ63941.1| integration host factor, beta subunit [beta proteobacterium KB13]
Length = 92
Score = 99.1 bits (246), Expect = 2e-19, Method: Composition-based stats.
Identities = 39/92 (42%), Positives = 59/92 (64%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M +S LI ++ + L +D E +V +L+ M+ L NG R+EIRGFGSFS+ KR AR+
Sbjct: 1 MTRSELIEKLSSQFQHLLQKDAELVVKNILDSMSSTLNNGKRIEIRGFGSFSLNKRPARI 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P + + + EK+VP F+AGK L+ R++
Sbjct: 61 GRNPKTGEKVHISEKLVPHFKAGKELRSRVDK 92
>gi|59711406|ref|YP_204182.1| HU, DNA-binding transcriptional regulator, beta subunit [Vibrio
fischeri ES114]
gi|59479507|gb|AAW85294.1| HU, DNA-binding transcriptional regulator, beta subunit [Vibrio
fischeri ES114]
Length = 98
Score = 99.1 bits (246), Expect = 2e-19, Method: Composition-based stats.
Identities = 34/90 (37%), Positives = 53/90 (58%), Gaps = 1/90 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
KS L+ IA+ + ++ + ++ L+E +T+ L +G +V + GFGSF VR+RAAR
Sbjct: 10 NKSQLVDQIAE-SADISKAAAGRALDALVETVTETLKSGDQVTLVGFGSFVVRERAARTG 68
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + I + VP F+AGK LK+ N
Sbjct: 69 RNPKTGEAIEISAAKVPAFKAGKALKDACN 98
>gi|330444951|ref|ZP_08308605.1| DNA-binding protein HU-&alpha [Photobacterium leiognathi subsp.
mandapamensis svers.1.1.]
gi|328493069|dbj|GAA03102.1| DNA-binding protein HU-&alpha [Photobacterium leiognathi subsp.
mandapamensis svers.1.1.]
Length = 90
Score = 99.1 bits (246), Expect = 2e-19, Method: Composition-based stats.
Identities = 35/91 (38%), Positives = 48/91 (52%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI IA+K L+ + + L+ +T AL G +V++ GFG+F V RAAR
Sbjct: 1 MNKTQLIDLIAEK-ADLSKAQAKAALESTLDGITDALKEGDQVQLIGFGTFKVNHRAART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P I + VP F AGK LK+ L
Sbjct: 60 GRNPQTGAEIQIAAANVPAFVAGKALKDALK 90
>gi|148543996|ref|YP_001271366.1| nucleoid protein Hbs [Lactobacillus reuteri DSM 20016]
gi|184153390|ref|YP_001841731.1| DNA-binding protein HU [Lactobacillus reuteri JCM 1112]
gi|194467924|ref|ZP_03073910.1| histone family protein DNA-binding protein [Lactobacillus reuteri
100-23]
gi|227364909|ref|ZP_03848954.1| DNA-binding protein HU [Lactobacillus reuteri MM2-3]
gi|227543423|ref|ZP_03973472.1| DNA-binding protein HU [Lactobacillus reuteri CF48-3A]
gi|300910089|ref|ZP_07127549.1| DNA-binding protein HU [Lactobacillus reuteri SD2112]
gi|325682466|ref|ZP_08161983.1| DNA-binding protein HU [Lactobacillus reuteri MM4-1A]
gi|133930435|gb|ABO43789.1| DNA-binding protein [Lactobacillus reuteri]
gi|148531030|gb|ABQ83029.1| bacterial nucleoid protein Hbs [Lactobacillus reuteri DSM 20016]
gi|183224734|dbj|BAG25251.1| DNA-binding protein HU [Lactobacillus reuteri JCM 1112]
gi|194452777|gb|EDX41675.1| histone family protein DNA-binding protein [Lactobacillus reuteri
100-23]
gi|227070056|gb|EEI08434.1| DNA-binding protein HU [Lactobacillus reuteri MM2-3]
gi|227186602|gb|EEI66673.1| DNA-binding protein HU [Lactobacillus reuteri CF48-3A]
gi|300892737|gb|EFK86097.1| DNA-binding protein HU [Lactobacillus reuteri SD2112]
gi|324978305|gb|EGC15255.1| DNA-binding protein HU [Lactobacillus reuteri MM4-1A]
Length = 91
Score = 99.1 bits (246), Expect = 2e-19, Method: Composition-based stats.
Identities = 30/90 (33%), Positives = 49/90 (54%), Gaps = 1/90 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ L+ +A L +D V+ + + +LA G +V++ GFG+F VR+RAAR
Sbjct: 3 NKAELVSNVATAT-GLTKKDATAAVDAVFSSIQASLAKGEKVQLIGFGNFEVRQRAARKG 61
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + I++ VP F+ GK LK+ +
Sbjct: 62 RNPQTGEEINIPASKVPAFKPGKALKDAVK 91
>gi|268686838|ref|ZP_06153700.1| integration host factor subunit beta [Neisseria gonorrhoeae
SK-93-1035]
gi|268627122|gb|EEZ59522.1| integration host factor subunit beta [Neisseria gonorrhoeae
SK-93-1035]
Length = 104
Score = 99.1 bits (246), Expect = 2e-19, Method: Composition-based stats.
Identities = 41/96 (42%), Positives = 58/96 (60%), Gaps = 5/96 (5%)
Query: 1 MIKSSLIGTIAK-----KNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRK 55
M KS L+ +A+ L +DVE V L++ MT++LA G R+EIRGFGSF +
Sbjct: 1 MTKSELMVRLAEVFAAKNGTHLLAKDVEYSVKFLVDTMTRSLARGQRIEIRGFGSFDLNH 60
Query: 56 RAARLARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R AR+ R P + + V EK VP F+ GK L+ER++
Sbjct: 61 RPARIGRNPKTGERVEVPEKHVPHFKPGKELRERVD 96
>gi|304405810|ref|ZP_07387468.1| histone family protein DNA-binding protein [Paenibacillus
curdlanolyticus YK9]
gi|304345053|gb|EFM10889.1| histone family protein DNA-binding protein [Paenibacillus
curdlanolyticus YK9]
Length = 90
Score = 99.1 bits (246), Expect = 2e-19, Method: Composition-based stats.
Identities = 39/91 (42%), Positives = 55/91 (60%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI IA K+ L +DVE ++N L E+T ALA+G +V++ GFG+F RKR+ R
Sbjct: 1 MNKTDLINNIATKS-GLTKRDVEAVLNGFLGEVTDALASGDKVQLIGFGTFETRKRSGRT 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P I + E VP F+AG LK+ +
Sbjct: 60 GRNPQTGNPIEIAESKVPAFKAGNKLKDAIK 90
>gi|27364627|ref|NP_760155.1| DNA-binding protein HU-alpha [Vibrio vulnificus CMCP6]
gi|320155021|ref|YP_004187400.1| DNA-binding protein HU-alpha [Vibrio vulnificus MO6-24/O]
gi|27360772|gb|AAO09682.1| DNA-binding protein HU-alpha [Vibrio vulnificus CMCP6]
gi|319930333|gb|ADV85197.1| DNA-binding protein HU-alpha [Vibrio vulnificus MO6-24/O]
Length = 90
Score = 99.1 bits (246), Expect = 2e-19, Method: Composition-based stats.
Identities = 36/91 (39%), Positives = 48/91 (52%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI IA+K L+ + + L +T AL G +V++ GFG+F V RAAR
Sbjct: 1 MNKTQLIDFIAEK-ADLSKAQAKAALEATLNGVTDALKEGDQVQLIGFGTFKVNHRAART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P I + VP F AGK LKE +N
Sbjct: 60 GRNPKTGDEIQIAAANVPAFVAGKALKESVN 90
>gi|288941154|ref|YP_003443394.1| histone family protein DNA-binding protein [Allochromatium
vinosum DSM 180]
gi|288896526|gb|ADC62362.1| histone family protein DNA-binding protein [Allochromatium
vinosum DSM 180]
Length = 90
Score = 99.1 bits (246), Expect = 2e-19, Method: Composition-based stats.
Identities = 29/90 (32%), Positives = 48/90 (53%), Gaps = 1/90 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI +A+ ++ + ++ + + AL G V + GFG+FS+++RAAR
Sbjct: 1 MNKSELIEKMAEA-ADISKAAAGRALDAFTDSIAVALKEGDTVSLIGFGTFSLKERAART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P I ++ P F+AGK LK+ +
Sbjct: 60 GRNPQTGATIEIKASKTPSFKAGKALKDAV 89
>gi|78045062|ref|YP_359077.1| DNA-binding protein HU [Carboxydothermus hydrogenoformans Z-2901]
gi|77997177|gb|ABB16076.1| DNA-binding protein HU [Carboxydothermus hydrogenoformans Z-2901]
Length = 89
Score = 99.1 bits (246), Expect = 2e-19, Method: Composition-based stats.
Identities = 36/90 (40%), Positives = 56/90 (62%), Gaps = 1/90 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ L+ IA+K ++ +D EK +N +L + +AL G +V++ GFG+F VR+RAAR
Sbjct: 1 MNKAELVSVIAEK-AEMTKKDAEKALNAVLAAIEEALKKGEKVQLVGFGTFEVRERAARK 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P + I + VP F+ GK LKE++
Sbjct: 60 GRNPQTGQEIEIPASKVPVFKPGKLLKEKI 89
>gi|29654755|ref|NP_820447.1| DNA-binding protein HU [Coxiella burnetii RSA 493]
gi|154705755|ref|YP_001423922.1| DNA-binding protein HU [Coxiella burnetii Dugway 5J108-111]
gi|161830880|ref|YP_001597305.1| DNA-binding protein HU [Coxiella burnetii RSA 331]
gi|165919394|ref|ZP_02219460.1| DNA-binding protein HU [Coxiella burnetii RSA 334]
gi|212212172|ref|YP_002303108.1| DNA-binding protein HU [Coxiella burnetii CbuG_Q212]
gi|212219188|ref|YP_002305975.1| DNA-binding protein HU [Coxiella burnetii CbuK_Q154]
gi|29542023|gb|AAO90961.1| DNA-binding protein HU [Coxiella burnetii RSA 493]
gi|154355041|gb|ABS76503.1| DNA-binding protein HU [Coxiella burnetii Dugway 5J108-111]
gi|161762747|gb|ABX78389.1| DNA-binding protein HU [Coxiella burnetii RSA 331]
gi|165916910|gb|EDR35514.1| DNA-binding protein HU [Coxiella burnetii RSA 334]
gi|212010582|gb|ACJ17963.1| DNA-binding protein HU [Coxiella burnetii CbuG_Q212]
gi|212013450|gb|ACJ20830.1| DNA-binding protein HU [Coxiella burnetii CbuK_Q154]
Length = 94
Score = 99.1 bits (246), Expect = 2e-19, Method: Composition-based stats.
Identities = 29/94 (30%), Positives = 50/94 (53%), Gaps = 1/94 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI IA ++ ++ + ++ ++ +T++L G V + GFGSF+ +RAAR
Sbjct: 1 MNKNELIEVIA-QSADISKNAAGRALDAFVDSVTKSLQEGEDVVLVGFGSFTTSQRAART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSPD 94
R P + + V F+AGK LK+ +N
Sbjct: 60 GRNPQTGDTMQIPAATVARFKAGKKLKDAVNKEK 93
>gi|95929490|ref|ZP_01312233.1| histone-like DNA-binding protein [Desulfuromonas acetoxidans DSM
684]
gi|95134606|gb|EAT16262.1| histone-like DNA-binding protein [Desulfuromonas acetoxidans DSM
684]
Length = 94
Score = 99.1 bits (246), Expect = 2e-19, Method: Composition-based stats.
Identities = 42/92 (45%), Positives = 60/92 (65%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI + + LN ++ E +VN + + + AL G RVEIRGFGSFS+R+R AR
Sbjct: 1 MTKSQLIERLMESTSDLNKKESELVVNTIFDSIGSALIGGDRVEIRGFGSFSIREREARQ 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
AR P + +I++ K PFF+ GK L+ER++S
Sbjct: 61 ARNPKSGNLINIPSKKTPFFKTGKELRERVDS 92
>gi|116629549|ref|YP_814721.1| nucleoid DNA-binding protein [Lactobacillus gasseri ATCC 33323]
gi|238852699|ref|ZP_04643109.1| DNA-binding protein HU [Lactobacillus gasseri 202-4]
gi|282852068|ref|ZP_06261426.1| DNA-binding protein HU [Lactobacillus gasseri 224-1]
gi|300361578|ref|ZP_07057755.1| DNA-binding protein HU [Lactobacillus gasseri JV-V03]
gi|311110808|ref|ZP_07712205.1| DNA-binding protein HU [Lactobacillus gasseri MV-22]
gi|116095131|gb|ABJ60283.1| bacterial nucleoid protein Hbs [Lactobacillus gasseri ATCC 33323]
gi|238834845|gb|EEQ27072.1| DNA-binding protein HU [Lactobacillus gasseri 202-4]
gi|282556828|gb|EFB62432.1| DNA-binding protein HU [Lactobacillus gasseri 224-1]
gi|300354197|gb|EFJ70068.1| DNA-binding protein HU [Lactobacillus gasseri JV-V03]
gi|311065962|gb|EFQ46302.1| DNA-binding protein HU [Lactobacillus gasseri MV-22]
Length = 91
Score = 99.1 bits (246), Expect = 2e-19, Method: Composition-based stats.
Identities = 31/90 (34%), Positives = 48/90 (53%), Gaps = 1/90 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ L+ +A K L ++V V+ + + + LA G +V++ GFG+F VR RAAR
Sbjct: 3 NKAELVSEVAAKT-DLTKKEVAAAVDAIFSSIQEDLAKGEKVQLIGFGTFEVRHRAARKG 61
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P I + VP F+ GK LK+ +
Sbjct: 62 RNPQTGAEIEIPASKVPAFKPGKALKDAVK 91
>gi|218710171|ref|YP_002417792.1| DNA-binding protein HU-beta [Vibrio splendidus LGP32]
gi|218323190|emb|CAV19367.1| DNA-binding protein HU-beta [Vibrio splendidus LGP32]
Length = 97
Score = 99.1 bits (246), Expect = 2e-19, Method: Composition-based stats.
Identities = 33/90 (36%), Positives = 52/90 (57%), Gaps = 1/90 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ L+ +IA+ N ++ + ++ +E + L +G +V + GFG+FSVR RAAR
Sbjct: 9 NKTQLVESIAE-NADISKASAGRALDAFIEAVGTTLQSGDQVALVGFGTFSVRTRAARTG 67
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + I + E VP F+AGK LK+ N
Sbjct: 68 RNPKTGEEIQIAEAKVPGFKAGKALKDACN 97
>gi|313124300|ref|YP_004034559.1| DNA-binding protein hu-alpha (histone-like protein)
[Lactobacillus delbrueckii subsp. bulgaricus ND02]
gi|312280863|gb|ADQ61582.1| DNA-binding protein HU-alpha (Histone-like protein)
[Lactobacillus delbrueckii subsp. bulgaricus ND02]
Length = 90
Score = 99.1 bits (246), Expect = 2e-19, Method: Composition-based stats.
Identities = 31/91 (34%), Positives = 54/91 (59%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ L+ +++K + + ++ +IV+ L + +ALA G +V++ GFG+F +R+RAAR
Sbjct: 1 MNKTELVSVVSEKT-EFSKKESAQIVDALFASIEEALAKGEKVQLIGFGTFEIRERAARK 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P I + VP F+ GK LK+ +
Sbjct: 60 GRNPQTGAEIEIPASKVPAFKPGKALKDAVK 90
>gi|91783523|ref|YP_558729.1| nucleoid protein Hbs [Burkholderia xenovorans LB400]
gi|186475779|ref|YP_001857249.1| histone family protein DNA-binding protein [Burkholderia phymatum
STM815]
gi|91687477|gb|ABE30677.1| bacterial nucleoid protein Hbs [Burkholderia xenovorans LB400]
gi|184192238|gb|ACC70203.1| histone family protein DNA-binding protein [Burkholderia phymatum
STM815]
Length = 90
Score = 99.1 bits (246), Expect = 2e-19, Method: Composition-based stats.
Identities = 32/91 (35%), Positives = 49/91 (53%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI IA++ ++ + ++ ++ + L GG V + GFG+F+V KR AR
Sbjct: 1 MNKTELIDHIAQQ-ADISKAAAGRALDAVIGGVKGTLKKGGSVTLVGFGTFAVGKRTART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P I ++ VP FR GK LK+ LN
Sbjct: 60 GRNPRTGAAIKIKAAKVPKFRPGKALKDALN 90
>gi|118443809|ref|YP_877121.1| DNA binding protein HU [Clostridium novyi NT]
gi|118134265|gb|ABK61309.1| DNA binding protein HU [Clostridium novyi NT]
Length = 92
Score = 99.1 bits (246), Expect = 2e-19, Method: Composition-based stats.
Identities = 36/93 (38%), Positives = 59/93 (63%), Gaps = 1/93 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI ++A+K+ +L +DVE + +E + +AL +G +V++ GFG+F R+RA R
Sbjct: 1 MNKSELITSMAEKS-QLTKKDVEVALKAFIESVEEALMDGDKVQLVGFGTFETRERAERK 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSP 93
R P ++ I++ VP F+AGK KE +N+
Sbjct: 60 GRNPRTKEEITIPAATVPVFKAGKEFKEIVNNK 92
>gi|315123478|ref|YP_004065484.1| DNA-binding protein HU-beta (NS1) (HU-1) [Pseudoalteromonas sp.
SM9913]
gi|315017238|gb|ADT70575.1| DNA-binding protein HU-beta (NS1) (HU-1) [Pseudoalteromonas sp.
SM9913]
Length = 91
Score = 98.7 bits (245), Expect = 2e-19, Method: Composition-based stats.
Identities = 28/91 (30%), Positives = 50/91 (54%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ L+ I+ + +++ + ++ +T +L G V + GFG+FSV++RAAR
Sbjct: 1 MNKAQLVEKIST-DAEISKAAATRALDAFTGAVTSSLKEGNSVALVGFGTFSVKERAART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P I + +P F+ GK LK+++N
Sbjct: 60 GRNPQTGAEIQISAATIPSFKPGKGLKDQVN 90
>gi|228949548|ref|ZP_04111797.1| DNA-binding protein HU [Bacillus thuringiensis serovar monterrey
BGSC 4AJ1]
gi|228810128|gb|EEM56500.1| DNA-binding protein HU [Bacillus thuringiensis serovar monterrey
BGSC 4AJ1]
Length = 90
Score = 98.7 bits (245), Expect = 2e-19, Method: Composition-based stats.
Identities = 32/91 (35%), Positives = 52/91 (57%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI +++K L +D V +L+++TQ+L V++ GFG+F VR+R+AR
Sbjct: 1 MNKTELINQVSEKTS-LTKKDATASVQAVLDQITQSLQKDESVQLIGFGTFEVRERSART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + + + P F+AGK LKE +
Sbjct: 60 GRNPQTGEEMHIPGGKAPAFKAGKALKEAVK 90
>gi|90407137|ref|ZP_01215325.1| Bacterial nucleoid DNA-binding protein [Psychromonas sp. CNPT3]
gi|90311713|gb|EAS39810.1| Bacterial nucleoid DNA-binding protein [Psychromonas sp. CNPT3]
Length = 91
Score = 98.7 bits (245), Expect = 2e-19, Method: Composition-based stats.
Identities = 35/91 (38%), Positives = 53/91 (58%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ L+ IA+K+ +L + V +L +T +L +G V++ GFG+F V RAAR+
Sbjct: 1 MNKTQLVAQIAEKS-ELTKVQAKAAVEQILASITDSLKDGEPVQLIGFGTFKVNHRAARI 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + I ++ VP F AGK LKE +N
Sbjct: 60 GRNPQTGEDIQIKAANVPAFVAGKALKESVN 90
>gi|187928947|ref|YP_001899434.1| histone family protein DNA-binding protein [Ralstonia pickettii
12J]
gi|187725837|gb|ACD27002.1| histone family protein DNA-binding protein [Ralstonia pickettii
12J]
Length = 90
Score = 98.7 bits (245), Expect = 2e-19, Method: Composition-based stats.
Identities = 31/91 (34%), Positives = 50/91 (54%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI +A + ++ + ++ L++ + AL GG V + GFG+F V KR++R
Sbjct: 1 MNKTDLIDHVATQT-DMSKAAAGRAIDALIDGIKDALCEGGSVTLVGFGTFLVGKRSSRN 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P I++E V F+ GK LK+ LN
Sbjct: 60 GRNPRTGAAITIEGGKVAKFKPGKALKDALN 90
>gi|223043293|ref|ZP_03613340.1| DNA-binding protein HU 1 (DNA-binding protein II) (HB)
[Staphylococcus capitis SK14]
gi|314933655|ref|ZP_07841020.1| DNA-binding protein HU [Staphylococcus caprae C87]
gi|222443504|gb|EEE49602.1| DNA-binding protein HU 1 (DNA-binding protein II) (HB)
[Staphylococcus capitis SK14]
gi|313653805|gb|EFS17562.1| DNA-binding protein HU [Staphylococcus caprae C87]
Length = 90
Score = 98.7 bits (245), Expect = 2e-19, Method: Composition-based stats.
Identities = 34/91 (37%), Positives = 54/91 (59%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI +A++ L ++ V+ + E + ++LA G +V++ GFG+F VR+RAAR
Sbjct: 1 MNKTDLINAVAEQ-ADLTKKEAGSAVDAVFESIQKSLAKGEKVQLIGFGNFEVRERAARK 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P K I + VP F+AGK LK+ +
Sbjct: 60 GRNPQTGKEIDIPASKVPAFKAGKALKDAVK 90
>gi|242279062|ref|YP_002991191.1| histone family protein DNA-binding protein [Desulfovibrio
salexigens DSM 2638]
gi|242121956|gb|ACS79652.1| histone family protein DNA-binding protein [Desulfovibrio
salexigens DSM 2638]
Length = 91
Score = 98.7 bits (245), Expect = 2e-19, Method: Composition-based stats.
Identities = 38/92 (41%), Positives = 56/92 (60%), Gaps = 1/92 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI ++A++ L+ + +IV+ ++ + +AL G RVEIRGFGSF +++
Sbjct: 1 MNKSELIKSLAEE-KGLHVDESAEIVDAFVDAIKEALVRGDRVEIRGFGSFKMKEYKGYT 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P V+ V K +PFFR GK LKE LN+
Sbjct: 60 GRNPKTGDVVDVTPKKLPFFRPGKELKEYLNA 91
>gi|254496694|ref|ZP_05109557.1| integration host factor beta subunit [Legionella drancourtii
LLAP12]
gi|254354122|gb|EET12794.1| integration host factor beta subunit [Legionella drancourtii
LLAP12]
Length = 105
Score = 98.7 bits (245), Expect = 2e-19, Method: Composition-based stats.
Identities = 38/92 (41%), Positives = 53/92 (57%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
MIKS LI IA + L + V +N +LE M+ AL R+EIRGFGSFS+ R R
Sbjct: 1 MIKSELIEHIAARMTHLTEKQVADGINRILELMSDALIKNQRIEIRGFGSFSLHYRPPRN 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
A P + + + K P F+ GK L+ER+++
Sbjct: 61 AHNPKTGEKVVTKAKYSPHFKPGKELRERVDA 92
>gi|34498009|ref|NP_902224.1| DNA-binding protein HU-beta [Chromobacterium violaceum ATCC
12472]
gi|34103864|gb|AAQ60224.1| DNA-binding protein hu-beta [Chromobacterium violaceum ATCC
12472]
Length = 89
Score = 98.7 bits (245), Expect = 2e-19, Method: Composition-based stats.
Identities = 33/90 (36%), Positives = 46/90 (51%), Gaps = 1/90 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI IA + ++ K ++ ++ +T AL G V + GFG+F V +RA R
Sbjct: 1 MNKSELIDAIAAE-ADISKAAAAKALDGMVAAVTSALKKGDTVTLVGFGTFYVGERAERS 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P I + P FRAGK LK+ L
Sbjct: 60 GRNPKTGATIKIPAARSPKFRAGKALKDAL 89
>gi|323526327|ref|YP_004228480.1| histone family protein DNA-binding protein [Burkholderia sp.
CCGE1001]
gi|323383329|gb|ADX55420.1| histone family protein DNA-binding protein [Burkholderia sp.
CCGE1001]
Length = 94
Score = 98.7 bits (245), Expect = 2e-19, Method: Composition-based stats.
Identities = 29/91 (31%), Positives = 45/91 (49%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K LI +A + + ++ ++ +T+A+ G V++ GFGSFS RAAR
Sbjct: 1 MNKQELIDAVASAT-GSSKSIAGEAIDAVIGAITEAVVKGDTVQLIGFGSFSQGTRAART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + IS+ F AGK K+ +N
Sbjct: 60 GRNPATGEEISIAAAKTVKFTAGKGFKDAVN 90
>gi|288553957|ref|YP_003425892.1| DNA-binding protein HU [Bacillus pseudofirmus OF4]
gi|288545117|gb|ADC49000.1| DNA-binding protein HU, Hbsu-like protein [Bacillus pseudofirmus
OF4]
Length = 90
Score = 98.7 bits (245), Expect = 2e-19, Method: Composition-based stats.
Identities = 31/91 (34%), Positives = 54/91 (59%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI +A++ +L+ +D VN + + +++ ++ G V++ GFG+F VR+RAAR
Sbjct: 1 MNKTELINEVAERT-QLSKKDAGNAVNEVFDVISETMSKGETVQLIGFGNFEVRERAARK 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + I + P F+AGK LK+ +
Sbjct: 60 GRNPQTGEEIDIPATKTPAFKAGKQLKDAVK 90
>gi|258513573|ref|YP_003189795.1| histone family protein DNA-binding protein [Desulfotomaculum
acetoxidans DSM 771]
gi|257777278|gb|ACV61172.1| histone family protein DNA-binding protein [Desulfotomaculum
acetoxidans DSM 771]
Length = 96
Score = 98.7 bits (245), Expect = 2e-19, Method: Composition-based stats.
Identities = 35/90 (38%), Positives = 58/90 (64%), Gaps = 1/90 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI ++A++ +L +D EK VN +L+ + ALA G +V++ GFG+F ++ R AR
Sbjct: 1 MNKADLISSVAEE-AELTKKDAEKAVNGVLKCIEMALAKGEKVQLVGFGTFDIKYRKARK 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P + I +E VP F+AGK+L++ +
Sbjct: 60 GRNPQTGEEIDIEAANVPVFKAGKDLRDAV 89
>gi|198283163|ref|YP_002219484.1| histone family protein DNA-binding protein [Acidithiobacillus
ferrooxidans ATCC 53993]
gi|218666540|ref|YP_002425392.1| DNA-binding protein HU [Acidithiobacillus ferrooxidans ATCC
23270]
gi|198247684|gb|ACH83277.1| histone family protein DNA-binding protein [Acidithiobacillus
ferrooxidans ATCC 53993]
gi|218518753|gb|ACK79339.1| DNA-binding protein HU [Acidithiobacillus ferrooxidans ATCC
23270]
Length = 90
Score = 98.7 bits (245), Expect = 2e-19, Method: Composition-based stats.
Identities = 32/91 (35%), Positives = 47/91 (51%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI IA++ + ++ L++ +T AL G +V + GFGSF V R AR
Sbjct: 1 MNKSELIEKIAEE-AGVTRAAAGHTLDALVKVVTDALKAGDQVTLVGFGSFLVSSREARK 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P I + P F+AGK L++ +N
Sbjct: 60 GRNPATGAEIMIAASRTPKFKAGKALRDAVN 90
>gi|77919476|ref|YP_357291.1| nucleoid DNA-binding protein [Pelobacter carbinolicus DSM 2380]
gi|77545559|gb|ABA89121.1| nucleoid DNA-binding protein [Pelobacter carbinolicus DSM 2380]
Length = 94
Score = 98.7 bits (245), Expect = 2e-19, Method: Composition-based stats.
Identities = 42/92 (45%), Positives = 60/92 (65%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI ++ N L+ ++ E +VN LL+ + AL G RVEIRGFGSF+VR R AR
Sbjct: 1 MTKSELIEELSYLNGILSKKESELVVNTLLDGIRDALVGGDRVEIRGFGSFTVRTREARE 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
AR P + +V+++ K FF+ GK L+ER++
Sbjct: 61 ARNPKSGEVVAIPAKKTAFFKTGKQLRERVDK 92
>gi|184155358|ref|YP_001843698.1| DNA-binding protein [Lactobacillus fermentum IFO 3956]
gi|227515172|ref|ZP_03945221.1| DNA-binding protein HU [Lactobacillus fermentum ATCC 14931]
gi|260662129|ref|ZP_05863025.1| DNA-binding protein [Lactobacillus fermentum 28-3-CHN]
gi|183226702|dbj|BAG27218.1| DNA-binding protein [Lactobacillus fermentum IFO 3956]
gi|227086504|gb|EEI21816.1| DNA-binding protein HU [Lactobacillus fermentum ATCC 14931]
gi|260553512|gb|EEX26404.1| DNA-binding protein [Lactobacillus fermentum 28-3-CHN]
Length = 91
Score = 98.7 bits (245), Expect = 2e-19, Method: Composition-based stats.
Identities = 30/90 (33%), Positives = 48/90 (53%), Gaps = 1/90 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ L+ +A L +D V+ + + +LA G +V++ GFG+F VR+RAAR
Sbjct: 3 NKAELVTNVATAT-GLTKKDATAAVDAVFSSIQASLAKGEKVQLIGFGNFEVRERAARKG 61
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + I + VP F+ GK LK+ +
Sbjct: 62 RNPQTGQEIQIPASKVPAFKPGKALKDAVK 91
>gi|57339942|gb|AAW49958.1| hypothetical protein FTT0627 [synthetic construct]
Length = 125
Score = 98.7 bits (245), Expect = 2e-19, Method: Composition-based stats.
Identities = 30/91 (32%), Positives = 49/91 (53%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS L+ IAK+ + + ++ + +T+AL NG V + GFG+F V++R+ R
Sbjct: 27 MNKSELVSAIAKE-ADVTKEVASNTLDATIAAVTKALKNGDSVTLVGFGTFQVKERSPRE 85
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + I + VP F+A K LK+ +
Sbjct: 86 GRNPKTGETIKIPASKVPSFKASKGLKDAVK 116
>gi|302878840|ref|YP_003847404.1| histone family protein DNA-binding protein [Gallionella
capsiferriformans ES-2]
gi|302581629|gb|ADL55640.1| histone family protein DNA-binding protein [Gallionella
capsiferriformans ES-2]
Length = 90
Score = 98.7 bits (245), Expect = 2e-19, Method: Composition-based stats.
Identities = 33/91 (36%), Positives = 51/91 (56%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS L+ IA + ++ + ++ L + AL NG V + GFG+F+V +RA R+
Sbjct: 1 MNKSDLVDAIAT-SADISKAAAGRALDGALNAIKTALKNGEEVSLVGFGAFTVGERAGRV 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P I+++ VP FRAGK LK+ +N
Sbjct: 60 GRNPQTGAAITIKAAKVPKFRAGKGLKDAVN 90
>gi|145630846|ref|ZP_01786623.1| integration host factor beta-subunit [Haemophilus influenzae
R3021]
gi|145639202|ref|ZP_01794809.1| integration host factor beta-subunit [Haemophilus influenzae
PittII]
gi|229845052|ref|ZP_04465188.1| hypothetical protein CGSHi6P18H1_00834 [Haemophilus influenzae
6P18H1]
gi|229846876|ref|ZP_04466983.1| hypothetical protein CGSHi7P49H1_02608 [Haemophilus influenzae
7P49H1]
gi|260582649|ref|ZP_05850438.1| integration host factor, beta subunit [Haemophilus influenzae
NT127]
gi|144983506|gb|EDJ90974.1| integration host factor beta-subunit [Haemophilus influenzae
R3021]
gi|145271764|gb|EDK11674.1| integration host factor beta-subunit [Haemophilus influenzae
PittII]
gi|229810365|gb|EEP46084.1| hypothetical protein CGSHi7P49H1_02608 [Haemophilus influenzae
7P49H1]
gi|229812024|gb|EEP47717.1| hypothetical protein CGSHi6P18H1_00834 [Haemophilus influenzae
6P18H1]
gi|260094321|gb|EEW78220.1| integration host factor, beta subunit [Haemophilus influenzae
NT127]
gi|309750778|gb|ADO80762.1| Integration host factor, beta-subunit [Haemophilus influenzae
R2866]
Length = 94
Score = 98.7 bits (245), Expect = 2e-19, Method: Composition-based stats.
Identities = 42/91 (46%), Positives = 59/91 (64%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI + K P L +++E +V +LE ++Q+L NG RVEIRGFGSFS+ R RL
Sbjct: 1 MTKSELIEKLLAKQPTLPAKEIENMVKDILEFISQSLENGDRVEIRGFGSFSLHHRQPRL 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P +++ K VP+F+AGK LK R++
Sbjct: 61 GRNPKTGDSVNLSAKSVPYFKAGKELKARVD 91
>gi|153835064|ref|ZP_01987731.1| DNA-binding protein HU-beta [Vibrio harveyi HY01]
gi|153838911|ref|ZP_01991578.1| DNA-binding protein HU-beta [Vibrio parahaemolyticus AQ3810]
gi|260902149|ref|ZP_05910544.1| DNA-binding protein HU-beta [Vibrio parahaemolyticus AQ4037]
gi|269959588|ref|ZP_06173969.1| DNA-binding protein HU [Vibrio harveyi 1DA3]
gi|148868460|gb|EDL67566.1| DNA-binding protein HU-beta [Vibrio harveyi HY01]
gi|149747619|gb|EDM58543.1| DNA-binding protein HU-beta [Vibrio parahaemolyticus AQ3810]
gi|269835646|gb|EEZ89724.1| DNA-binding protein HU [Vibrio harveyi 1DA3]
gi|308110155|gb|EFO47695.1| DNA-binding protein HU-beta [Vibrio parahaemolyticus AQ4037]
gi|328471094|gb|EGF42000.1| DNA-binding protein [Vibrio parahaemolyticus 10329]
Length = 90
Score = 98.7 bits (245), Expect = 2e-19, Method: Composition-based stats.
Identities = 37/91 (40%), Positives = 49/91 (53%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI IA+K L+ + + LE +T AL G +V++ GFG+F V RAAR
Sbjct: 1 MNKTQLIDFIAEK-ADLSKAQAKAALEATLEGVTGALKEGDQVQLIGFGTFKVNHRAART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P I + VP F AGK LKE +N
Sbjct: 60 GRNPKTGDEIQIAAANVPAFVAGKALKESVN 90
>gi|59801191|ref|YP_207903.1| DbhA [Neisseria gonorrhoeae FA 1090]
gi|194098662|ref|YP_002001724.1| DbhA [Neisseria gonorrhoeae NCCP11945]
gi|239998975|ref|ZP_04718899.1| DbhA [Neisseria gonorrhoeae 35/02]
gi|240014114|ref|ZP_04721027.1| DbhA [Neisseria gonorrhoeae DGI18]
gi|240016549|ref|ZP_04723089.1| DbhA [Neisseria gonorrhoeae FA6140]
gi|240080673|ref|ZP_04725216.1| DbhA [Neisseria gonorrhoeae FA19]
gi|240112961|ref|ZP_04727451.1| DbhA [Neisseria gonorrhoeae MS11]
gi|240115715|ref|ZP_04729777.1| DbhA [Neisseria gonorrhoeae PID18]
gi|240118011|ref|ZP_04732073.1| DbhA [Neisseria gonorrhoeae PID1]
gi|240121676|ref|ZP_04734638.1| DbhA [Neisseria gonorrhoeae PID24-1]
gi|240123565|ref|ZP_04736521.1| DbhA [Neisseria gonorrhoeae PID332]
gi|240125747|ref|ZP_04738633.1| DbhA [Neisseria gonorrhoeae SK-92-679]
gi|240128269|ref|ZP_04740930.1| DbhA [Neisseria gonorrhoeae SK-93-1035]
gi|254493764|ref|ZP_05106935.1| DNA-binding protein HU-beta [Neisseria gonorrhoeae 1291]
gi|260440472|ref|ZP_05794288.1| DbhA [Neisseria gonorrhoeae DGI2]
gi|268594821|ref|ZP_06128988.1| DNA-binding protein [Neisseria gonorrhoeae 35/02]
gi|268596797|ref|ZP_06130964.1| DNA-binding protein [Neisseria gonorrhoeae FA19]
gi|268599038|ref|ZP_06133205.1| DNA-binding protein HU-beta [Neisseria gonorrhoeae MS11]
gi|268601391|ref|ZP_06135558.1| DNA-binding protein HU-beta [Neisseria gonorrhoeae PID18]
gi|268603720|ref|ZP_06137887.1| DNA-binding protein HU-beta [Neisseria gonorrhoeae PID1]
gi|268682191|ref|ZP_06149053.1| DNA-binding protein HU-beta [Neisseria gonorrhoeae PID332]
gi|268684342|ref|ZP_06151204.1| DNA-binding protein HU-beta [Neisseria gonorrhoeae SK-92-679]
gi|268686663|ref|ZP_06153525.1| DNA-binding protein HU-beta [Neisseria gonorrhoeae SK-93-1035]
gi|291043776|ref|ZP_06569492.1| DNA-binding protein [Neisseria gonorrhoeae DGI2]
gi|293399057|ref|ZP_06643222.1| DNA-binding protein HU-beta [Neisseria gonorrhoeae F62]
gi|59718086|gb|AAW89491.1| putative DNA-binding protein Hu [Neisseria gonorrhoeae FA 1090]
gi|193933952|gb|ACF29776.1| DbhA [Neisseria gonorrhoeae NCCP11945]
gi|226512804|gb|EEH62149.1| DNA-binding protein HU-beta [Neisseria gonorrhoeae 1291]
gi|268548210|gb|EEZ43628.1| DNA-binding protein [Neisseria gonorrhoeae 35/02]
gi|268550585|gb|EEZ45604.1| DNA-binding protein [Neisseria gonorrhoeae FA19]
gi|268583169|gb|EEZ47845.1| DNA-binding protein HU-beta [Neisseria gonorrhoeae MS11]
gi|268585522|gb|EEZ50198.1| DNA-binding protein HU-beta [Neisseria gonorrhoeae PID18]
gi|268587851|gb|EEZ52527.1| DNA-binding protein HU-beta [Neisseria gonorrhoeae PID1]
gi|268622475|gb|EEZ54875.1| DNA-binding protein HU-beta [Neisseria gonorrhoeae PID332]
gi|268624626|gb|EEZ57026.1| DNA-binding protein HU-beta [Neisseria gonorrhoeae SK-92-679]
gi|268626947|gb|EEZ59347.1| DNA-binding protein HU-beta [Neisseria gonorrhoeae SK-93-1035]
gi|291012239|gb|EFE04228.1| DNA-binding protein [Neisseria gonorrhoeae DGI2]
gi|291610471|gb|EFF39581.1| DNA-binding protein HU-beta [Neisseria gonorrhoeae F62]
Length = 89
Score = 98.7 bits (245), Expect = 2e-19, Method: Composition-based stats.
Identities = 31/90 (34%), Positives = 47/90 (52%), Gaps = 1/90 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI IA++ ++ +K ++ +T AL G V + GFG+F V +RA R
Sbjct: 1 MNKSELIEAIAQE-ADISKAAAQKALDATTNAVTNALKQGDTVTLVGFGTFYVGERAERQ 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P + +++ FRAGK LK+ L
Sbjct: 60 GRNPKTGEPLTIAAAKTLKFRAGKALKDAL 89
>gi|242347958|ref|YP_002995519.1| DNA-binding protein HU-beta (NS1) (HU-1) [Aeromonas hydrophila]
gi|224831777|gb|ACN66908.1| DNA-binding protein HU-beta (NS1) (HU-1) [Aeromonas hydrophila]
Length = 90
Score = 98.7 bits (245), Expect = 2e-19, Method: Composition-based stats.
Identities = 35/91 (38%), Positives = 53/91 (58%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI +A+ + ++ E VN L+ +T+ L +GG V + GFG+F V+ RAAR
Sbjct: 1 MNKSELIMKVAE-DADISKAQAEAAVNALINSVTEELKSGGTVALTGFGTFHVKARAART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + I + +P F+AGK LK+ +N
Sbjct: 60 GRNPQTGENIQIAAANIPGFKAGKGLKDTVN 90
>gi|149186802|ref|ZP_01865112.1| histone-like protein [Erythrobacter sp. SD-21]
gi|148829469|gb|EDL47910.1| histone-like protein [Erythrobacter sp. SD-21]
Length = 90
Score = 98.7 bits (245), Expect = 2e-19, Method: Composition-based stats.
Identities = 32/91 (35%), Positives = 52/91 (57%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LIG +A+ + L+ D V + + +T++L+ G V + GFG+FSV KR A
Sbjct: 1 MNKNDLIGAVAEAS-GLSKSDASSAVEGVFDAITKSLSKGDEVRLVGFGTFSVAKRKAST 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + +++ P F+AGK LK+ +N
Sbjct: 60 GRNPRTGEPMNIPASNQPKFKAGKGLKDAVN 90
>gi|90962747|ref|YP_536662.1| DNA-binding protein HU [Lactobacillus salivarius UCC118]
gi|90821941|gb|ABE00579.1| DNA-binding protein HU [Lactobacillus salivarius UCC118]
Length = 91
Score = 98.7 bits (245), Expect = 2e-19, Method: Composition-based stats.
Identities = 36/92 (39%), Positives = 53/92 (57%), Gaps = 1/92 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ L+ IA+K ++ E V+ E + +AL +G +V+I GFG+F VR+RAAR
Sbjct: 1 MNKNELVEAIAEKM-GATKKEAEAAVSAFTETVKEALVDGKKVQIIGFGNFEVRERAARK 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P K I + VP F+ GK LK+ +N
Sbjct: 60 GRNPQTGKEIEIPASKVPAFKPGKGLKDAVNK 91
>gi|310829349|ref|YP_003961706.1| histone family protein DNA-binding protein [Eubacterium limosum
KIST612]
gi|308741083|gb|ADO38743.1| histone family protein DNA-binding protein [Eubacterium limosum
KIST612]
Length = 91
Score = 98.7 bits (245), Expect = 2e-19, Method: Composition-based stats.
Identities = 35/92 (38%), Positives = 54/92 (58%), Gaps = 1/92 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI +A+K+ L+ +D EK + ++ + AL +G +V + GFG+F VR+RAAR
Sbjct: 1 MNKSELIAAMAEKS-GLSKKDSEKALGAFMDTVVDALKDGDKVALVGFGTFDVRERAART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
P ++ I + P F+AGK K+ LN
Sbjct: 60 GLNPRTKEPIEIAASKAPAFKAGKAFKDELNK 91
>gi|83719600|ref|YP_440564.1| DNA-binding protein HU-alpha [Burkholderia thailandensis E264]
gi|83653425|gb|ABC37488.1| DNA-binding protein HU-alpha [Burkholderia thailandensis E264]
Length = 126
Score = 98.7 bits (245), Expect = 2e-19, Method: Composition-based stats.
Identities = 30/92 (32%), Positives = 46/92 (50%), Gaps = 1/92 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K LI +A + + + ++ LLE + +A++ G V++ GFGSF KRAAR
Sbjct: 35 MNKQELIDAVAAQT-GASKAQTGETLDTLLEVIKKAVSKGDSVQLIGFGSFGSGKRAART 93
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P + I + F AGK K+ +N
Sbjct: 94 GRNPKTGETIKIPAAKTVKFTAGKAFKDAVNK 125
>gi|42519018|ref|NP_964948.1| DNA-binding protein HU [Lactobacillus johnsonii NCC 533]
gi|227889872|ref|ZP_04007677.1| DNA-binding protein HU [Lactobacillus johnsonii ATCC 33200]
gi|268319592|ref|YP_003293248.1| DNA-binding protein HU [Lactobacillus johnsonii FI9785]
gi|41583305|gb|AAS08914.1| DNA-binding protein HU [Lactobacillus johnsonii NCC 533]
gi|227849736|gb|EEJ59822.1| DNA-binding protein HU [Lactobacillus johnsonii ATCC 33200]
gi|262397967|emb|CAX66981.1| DNA-binding protein HU [Lactobacillus johnsonii FI9785]
gi|329667447|gb|AEB93395.1| DNA-binding protein HU [Lactobacillus johnsonii DPC 6026]
Length = 91
Score = 98.7 bits (245), Expect = 2e-19, Method: Composition-based stats.
Identities = 31/90 (34%), Positives = 48/90 (53%), Gaps = 1/90 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ L+ +A K L ++V V+ + + + LA G +V++ GFG+F VR RAAR
Sbjct: 3 NKAELVSEVAAKT-DLTKKEVAAAVDAIFNSIQEDLAKGEKVQLIGFGTFEVRHRAARKG 61
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P I + VP F+ GK LK+ +
Sbjct: 62 RNPQTGAEIEIPASKVPAFKPGKALKDAVK 91
>gi|303239804|ref|ZP_07326328.1| histone family protein DNA-binding protein [Acetivibrio
cellulolyticus CD2]
gi|302592741|gb|EFL62465.1| histone family protein DNA-binding protein [Acetivibrio
cellulolyticus CD2]
Length = 91
Score = 98.7 bits (245), Expect = 3e-19, Method: Composition-based stats.
Identities = 35/92 (38%), Positives = 59/92 (64%), Gaps = 1/92 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ L+ ++A+K L+ +D EK +N +E + +AL+ G ++++ GFGSF VR+RAAR
Sbjct: 1 MNKTDLVASMAEK-GDLSKKDAEKALNAFIESVEEALSQGDKIQLVGFGSFEVRERAARK 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P ++ I++ P F+ GK LK+ +N
Sbjct: 60 GRNPQTKEEINIPATKAPIFKVGKGLKDLVNK 91
>gi|302391837|ref|YP_003827657.1| bacterial nucleoid protein Hbs [Acetohalobium arabaticum DSM
5501]
gi|302203914|gb|ADL12592.1| bacterial nucleoid protein Hbs [Acetohalobium arabaticum DSM
5501]
Length = 99
Score = 98.7 bits (245), Expect = 3e-19, Method: Composition-based stats.
Identities = 35/100 (35%), Positives = 53/100 (53%), Gaps = 9/100 (9%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANG--------GRVEIRGFGSFS 52
M K+ L+ IA K L +D ++ V+ E +T+ L +V++ GFGSF
Sbjct: 1 MTKTELVDRIADKT-GLTKKDTKETVDAFTEVVTETLQEEANKDEDERDKVQLIGFGSFE 59
Query: 53 VRKRAARLARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
VR R+AR R P + I + + VP F+AGK LKE ++
Sbjct: 60 VRDRSARKGRNPQTGEEIEIPARKVPAFKAGKGLKEAVDQ 99
>gi|332686553|ref|YP_004456327.1| DNA-binding protein HBsu [Melissococcus plutonius ATCC 35311]
gi|332370562|dbj|BAK21518.1| DNA-binding protein HBsu [Melissococcus plutonius ATCC 35311]
Length = 91
Score = 98.7 bits (245), Expect = 3e-19, Method: Composition-based stats.
Identities = 32/90 (35%), Positives = 50/90 (55%), Gaps = 1/90 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ LI +A L+ +D V+ + + ++LA G +V++ GFG+F VR+RAAR
Sbjct: 3 NKAELIDNVA-STTGLSKKDATSAVDAVFATIQESLAKGEKVQLIGFGNFEVRERAARKG 61
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P I +E VP F+ GK LK+ +
Sbjct: 62 RNPQTGDEIQIEASKVPAFKPGKALKDAVK 91
>gi|146329216|ref|YP_001209151.1| DNA-binding protein HU [Dichelobacter nodosus VCS1703A]
gi|146232686|gb|ABQ13664.1| DNA-binding protein Hu [Dichelobacter nodosus VCS1703A]
Length = 104
Score = 98.7 bits (245), Expect = 3e-19, Method: Composition-based stats.
Identities = 28/92 (30%), Positives = 51/92 (55%), Gaps = 1/92 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ L+ IA+ + K ++ + +T++L G +V + GFG+F R+R+AR+
Sbjct: 1 MNKTELVDVIAEA-AGITKAQAGKALDAFTDCVTESLVKGDKVTLIGFGTFETRERSARI 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
P ++ I++ P F+AGK LK+ +N
Sbjct: 60 GHNPRTREKINIAASTTPAFKAGKKLKDAVNQ 91
>gi|88857365|ref|ZP_01132008.1| DNA-binding protein HU-beta (NS1) (HU-1) [Pseudoalteromonas
tunicata D2]
gi|88820562|gb|EAR30374.1| DNA-binding protein HU-beta (NS1) (HU-1) [Pseudoalteromonas
tunicata D2]
Length = 91
Score = 98.7 bits (245), Expect = 3e-19, Method: Composition-based stats.
Identities = 29/91 (31%), Positives = 50/91 (54%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ L+ IA + +++ + ++ ++ +L G V + GFG+FSV+ RAAR
Sbjct: 1 MNKAQLVEKIAT-DAEISKAAASRALDAFTGAVSNSLKEGNSVALVGFGTFSVKARAART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + I + +P F+AGK LK+ +N
Sbjct: 60 GRNPQTGEEIQISAANIPSFKAGKGLKDSVN 90
>gi|212709049|ref|ZP_03317177.1| hypothetical protein PROVALCAL_00081 [Providencia alcalifaciens
DSM 30120]
gi|212688338|gb|EEB47866.1| hypothetical protein PROVALCAL_00081 [Providencia alcalifaciens
DSM 30120]
Length = 90
Score = 98.7 bits (245), Expect = 3e-19, Method: Composition-based stats.
Identities = 30/91 (32%), Positives = 47/91 (51%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ L+ IA+ + L + + L ++ +L +G V++ GFG+F V RAAR
Sbjct: 1 MNKTELVDAIAE-SADLTKTQAKAALEATLSAISDSLKSGEAVQLVGFGTFKVSHRAART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + I + VP F AGK LK+ +
Sbjct: 60 GRNPQTKAEIQIPATTVPAFSAGKALKDAVK 90
>gi|221135499|ref|ZP_03561802.1| HU family DNA-binding protein [Glaciecola sp. HTCC2999]
Length = 90
Score = 98.7 bits (245), Expect = 3e-19, Method: Composition-based stats.
Identities = 34/91 (37%), Positives = 48/91 (52%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI IA + + + ++ +E +T L G V++ GFG+F VR+RAAR
Sbjct: 1 MNKSELIEKIADA-ADIKKVEAGRALDAFIEAVTAELKADGTVQLVGFGTFQVRERAART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P I + VP F+AGK LK+ N
Sbjct: 60 GRNPQTGAEIQIAAAKVPAFKAGKALKDACN 90
>gi|294670876|ref|ZP_06735732.1| hypothetical protein NEIELOOT_02580 [Neisseria elongata subsp.
glycolytica ATCC 29315]
gi|291307363|gb|EFE48606.1| hypothetical protein NEIELOOT_02580 [Neisseria elongata subsp.
glycolytica ATCC 29315]
Length = 104
Score = 98.7 bits (245), Expect = 3e-19, Method: Composition-based stats.
Identities = 42/96 (43%), Positives = 58/96 (60%), Gaps = 5/96 (5%)
Query: 1 MIKSSLIGTIAK-----KNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRK 55
M KS L+ +A+ L +DVE V +L++ MT++LA G R+EIRGFGSF +
Sbjct: 1 MTKSELMVRLAEVFAQKNGTHLLAKDVEYSVKILVDTMTRSLARGQRIEIRGFGSFDLNH 60
Query: 56 RAARLARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R AR R P +SV EK VP F+ GK L+ER++
Sbjct: 61 RPARQGRNPKTGDKVSVPEKYVPHFKPGKELRERVD 96
>gi|56460462|ref|YP_155743.1| nucleoid DNA-binding protein, IHF beta subunit [Idiomarina
loihiensis L2TR]
gi|81678412|sp|Q5QZ46|IHFB_IDILO RecName: Full=Integration host factor subunit beta;
Short=IHF-beta
gi|56179472|gb|AAV82194.1| Bacterial nucleoid DNA-binding protein, IHF beta subunit
[Idiomarina loihiensis L2TR]
Length = 93
Score = 98.7 bits (245), Expect = 3e-19, Method: Composition-based stats.
Identities = 42/91 (46%), Positives = 59/91 (64%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI + K+ +L + VE V +LE+M Q+L+ G RVEIRGFGSFS+ RA R+
Sbjct: 1 MTKSELIERLTLKH-ELPPKQVEASVKEILEQMVQSLSQGKRVEIRGFGSFSLHYRAPRV 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + ++ K VP F+AGK L+ER++
Sbjct: 60 GRNPKTGDPVELDGKYVPHFKAGKELRERVD 90
>gi|187923899|ref|YP_001895541.1| histone family protein DNA-binding protein [Burkholderia
phytofirmans PsJN]
gi|187715093|gb|ACD16317.1| histone family protein DNA-binding protein [Burkholderia
phytofirmans PsJN]
Length = 90
Score = 98.7 bits (245), Expect = 3e-19, Method: Composition-based stats.
Identities = 31/91 (34%), Positives = 50/91 (54%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI +A++ ++ + ++ +++ + L GG V + GFG+F+V KR AR
Sbjct: 1 MNKTELIDHVAQQ-ADISKAAAGRALDAVIDGVKGTLKKGGSVTLVGFGTFAVGKRTART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P I ++ VP FR GK LK+ LN
Sbjct: 60 GRNPRTGAAIKIKAAKVPKFRPGKALKDALN 90
>gi|331268343|ref|YP_004394835.1| histone family protein DNA-binding protein [Clostridium botulinum
BKT015925]
gi|329124893|gb|AEB74838.1| histone family protein DNA-binding protein [Clostridium botulinum
BKT015925]
Length = 92
Score = 98.3 bits (244), Expect = 3e-19, Method: Composition-based stats.
Identities = 34/93 (36%), Positives = 58/93 (62%), Gaps = 1/93 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI ++A+K+ +L +D E + +E + +AL +G +V++ GFG+F R+RA R
Sbjct: 1 MNKAELITSMAEKS-QLTKKDAEVALKAFIESVEEALMDGDKVQLVGFGTFETRERAERK 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSP 93
R P ++ I++ VP F+AGK KE +N+
Sbjct: 60 GRNPRTKEEITIPAATVPVFKAGKEFKEIVNNK 92
>gi|254469062|ref|ZP_05082468.1| DNA-binding protein HU-beta [beta proteobacterium KB13]
gi|207087872|gb|EDZ65155.1| DNA-binding protein HU-beta [beta proteobacterium KB13]
Length = 90
Score = 98.3 bits (244), Expect = 3e-19, Method: Composition-based stats.
Identities = 33/91 (36%), Positives = 47/91 (51%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K LI IA D + ++ +E +T+AL G V + GFG+F V KRAAR
Sbjct: 1 MNKGELIEAIASAT-GSTKADAGRALDATIENITKALKKGDTVTLIGFGTFKVSKRAART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + + + VP F+AG LK+ +N
Sbjct: 60 GRNPQTGAELKIPARKVPSFKAGAGLKDAVN 90
>gi|254423790|ref|ZP_05037508.1| DNA-binding protein HU [Synechococcus sp. PCC 7335]
gi|196191279|gb|EDX86243.1| DNA-binding protein HU [Synechococcus sp. PCC 7335]
Length = 92
Score = 98.3 bits (244), Expect = 3e-19, Method: Composition-based stats.
Identities = 29/90 (32%), Positives = 51/90 (56%), Gaps = 1/90 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI +A+K ++ +D + ++ +++ + +++A G +V + GFGSF R R AR
Sbjct: 1 MNKAELIDMVAEK-ADVSKKDADVVLTAVIDSIMESVAKGDKVSLVGFGSFEPRDRKARD 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P + I + VP F AGK K+ +
Sbjct: 60 GRNPQTGETIKIPATTVPAFSAGKGFKQLV 89
>gi|54310488|ref|YP_131508.1| putative DNA-binding protein HU-alpha [Photobacterium profundum
SS9]
gi|46914931|emb|CAG21706.1| putative DNA-binding protein HU-alpha [Photobacterium profundum
SS9]
Length = 90
Score = 98.3 bits (244), Expect = 3e-19, Method: Composition-based stats.
Identities = 35/91 (38%), Positives = 50/91 (54%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI IA+K L+ + + LE +T AL +G +V++ GFG+F V RAAR
Sbjct: 1 MNKTQLIDQIAEK-ADLSKAQAKLALESTLEGITDALKDGDQVQLIGFGTFKVNHRAART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + I + VP F +GK LK+ L
Sbjct: 60 GRNPQTGQEIQIAAANVPAFVSGKALKDALK 90
>gi|15602665|ref|NP_245737.1| HimD [Pasteurella multocida subsp. multocida str. Pm70]
gi|14194850|sp|Q9CML8|IHFB_PASMU RecName: Full=Integration host factor subunit beta;
Short=IHF-beta
gi|12721104|gb|AAK02884.1| HimD [Pasteurella multocida subsp. multocida str. Pm70]
Length = 94
Score = 98.3 bits (244), Expect = 3e-19, Method: Composition-based stats.
Identities = 39/91 (42%), Positives = 59/91 (64%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI + +K + +DVE V +L++M+ AL +G R+E+RGFGSFS+ R RL
Sbjct: 1 MTKSELIERLVQKCHAVAAKDVENAVKEILDQMSFALESGKRIEVRGFGSFSLHYRQPRL 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + + ++ K VP F+AGK L+ER++
Sbjct: 61 GRNPKTGEQVKLDAKSVPHFKAGKELRERVD 91
>gi|283796888|ref|ZP_06346041.1| DNA-binding protein HU [Clostridium sp. M62/1]
gi|291075298|gb|EFE12662.1| DNA-binding protein HU [Clostridium sp. M62/1]
gi|295089874|emb|CBK75981.1| Bacterial nucleoid DNA-binding protein [Clostridium cf.
saccharolyticum K10]
Length = 91
Score = 98.3 bits (244), Expect = 3e-19, Method: Composition-based stats.
Identities = 32/92 (34%), Positives = 56/92 (60%), Gaps = 1/92 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI +A+K +L+ +D EK + + +++ L GG++++ GFG+F V +RAAR
Sbjct: 1 MNKTELIAAVAEK-AELSKKDAEKAIKAFTDTVSEELVKGGKIQLVGFGTFEVSERAARE 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P + + + P F+AGK LK+ +N+
Sbjct: 60 GRNPKTGETMPIAASKTPKFKAGKALKDMVNA 91
>gi|72382731|ref|YP_292086.1| histone-like DNA-binding protein [Prochlorococcus marinus str.
NATL2A]
gi|124026452|ref|YP_001015567.1| histone-like DNA-binding protein [Prochlorococcus marinus str.
NATL1A]
gi|72002581|gb|AAZ58383.1| bacterial nucleoid protein Hbs [Prochlorococcus marinus str.
NATL2A]
gi|123961520|gb|ABM76303.1| Bacterial histone-like DNA-binding protein [Prochlorococcus
marinus str. NATL1A]
Length = 91
Score = 98.3 bits (244), Expect = 3e-19, Method: Composition-based stats.
Identities = 31/90 (34%), Positives = 50/90 (55%), Gaps = 1/90 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ L+ +A + +L DV +V+ ++ + ++ G +V I GFGSF R R+AR
Sbjct: 1 MNKADLVNLVAART-ELTKTDVSLVVDAAIDTIIDSVVEGKKVSILGFGSFEPRDRSARQ 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
P + I++ K VP F AGK K+R+
Sbjct: 60 GLNPKTGEKIAIPAKRVPAFTAGKLFKDRV 89
>gi|28899685|ref|NP_799290.1| DNA-binding protein HU-2 [Vibrio parahaemolyticus RIMD 2210633]
gi|260364000|ref|ZP_05776734.1| DNA-binding protein HU-beta [Vibrio parahaemolyticus K5030]
gi|260878153|ref|ZP_05890508.1| DNA-binding protein HU-beta [Vibrio parahaemolyticus AN-5034]
gi|260897884|ref|ZP_05906380.1| DNA-binding protein HU-beta [Vibrio parahaemolyticus Peru-466]
gi|28807937|dbj|BAC61174.1| DNA-binding protein HU-2 [Vibrio parahaemolyticus RIMD 2210633]
gi|308085528|gb|EFO35223.1| DNA-binding protein HU-beta [Vibrio parahaemolyticus Peru-466]
gi|308090217|gb|EFO39912.1| DNA-binding protein HU-beta [Vibrio parahaemolyticus AN-5034]
gi|308115538|gb|EFO53078.1| DNA-binding protein HU-beta [Vibrio parahaemolyticus K5030]
Length = 91
Score = 98.3 bits (244), Expect = 3e-19, Method: Composition-based stats.
Identities = 37/91 (40%), Positives = 48/91 (52%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI IA+K L+ + + LE +T AL G +V++ GFG+F V RAAR
Sbjct: 1 MNKTQLIDFIAEK-ADLSKAQAKAALEATLEGVTGALKEGDQVQLIGFGTFKVNHRAART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P I + VP F AGK LKE N
Sbjct: 60 GRNPKTGDEIQIAAANVPAFVAGKALKEACN 90
>gi|170692398|ref|ZP_02883561.1| histone family protein DNA-binding protein [Burkholderia graminis
C4D1M]
gi|323526044|ref|YP_004228197.1| histone family protein DNA-binding protein [Burkholderia sp.
CCGE1001]
gi|170142828|gb|EDT10993.1| histone family protein DNA-binding protein [Burkholderia graminis
C4D1M]
gi|323383046|gb|ADX55137.1| histone family protein DNA-binding protein [Burkholderia sp.
CCGE1001]
Length = 90
Score = 98.3 bits (244), Expect = 3e-19, Method: Composition-based stats.
Identities = 32/91 (35%), Positives = 50/91 (54%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI IA++ +++ + ++ ++ + L GG V + GFG+F+V KR AR
Sbjct: 1 MNKTELIDHIAQQ-AEISKAAAGRALDAVIGGVKGTLKKGGSVTLVGFGTFAVGKRTART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P I ++ VP FR GK LK+ LN
Sbjct: 60 GRNPRTGDAIKIKAAKVPKFRPGKALKDALN 90
>gi|21230442|ref|NP_636359.1| histone-like protein [Xanthomonas campestris pv. campestris str.
ATCC 33913]
gi|21241841|ref|NP_641423.1| histone-like protein [Xanthomonas axonopodis pv. citri str. 306]
gi|66769564|ref|YP_244326.1| histone-like protein [Xanthomonas campestris pv. campestris str.
8004]
gi|84622592|ref|YP_449964.1| histone-like protein [Xanthomonas oryzae pv. oryzae MAFF 311018]
gi|166710932|ref|ZP_02242139.1| histone-like protein [Xanthomonas oryzae pv. oryzicola BLS256]
gi|188578368|ref|YP_001915297.1| DNA-binding protein HU [Xanthomonas oryzae pv. oryzae PXO99A]
gi|289664181|ref|ZP_06485762.1| histone-like protein [Xanthomonas campestris pv. vasculorum
NCPPB702]
gi|289668773|ref|ZP_06489848.1| histone-like protein [Xanthomonas campestris pv. musacearum
NCPPB4381]
gi|325914923|ref|ZP_08177255.1| bacterial nucleoid DNA-binding protein [Xanthomonas vesicatoria
ATCC 35937]
gi|325927444|ref|ZP_08188691.1| bacterial nucleoid DNA-binding protein [Xanthomonas perforans
91-118]
gi|21107221|gb|AAM35959.1| histone-like protein [Xanthomonas axonopodis pv. citri str. 306]
gi|21112004|gb|AAM40283.1| histone-like protein [Xanthomonas campestris pv. campestris str.
ATCC 33913]
gi|66574896|gb|AAY50306.1| histone-like protein [Xanthomonas campestris pv. campestris str.
8004]
gi|84366532|dbj|BAE67690.1| histone-like protein [Xanthomonas oryzae pv. oryzae MAFF 311018]
gi|188522820|gb|ACD60765.1| DNA-binding protein HU [Xanthomonas oryzae pv. oryzae PXO99A]
gi|325538816|gb|EGD10480.1| bacterial nucleoid DNA-binding protein [Xanthomonas vesicatoria
ATCC 35937]
gi|325542194|gb|EGD13689.1| bacterial nucleoid DNA-binding protein [Xanthomonas perforans
91-118]
Length = 90
Score = 98.3 bits (244), Expect = 3e-19, Method: Composition-based stats.
Identities = 32/91 (35%), Positives = 50/91 (54%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI +A ++ + + V+ ++ E+T+AL G V + GFG+F VR+RA R
Sbjct: 1 MNKTELIDGVAAA-ADISKAEAGRAVDAVVSEITKALKKGDAVTLVGFGTFQVRERAERT 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P I + P F+AGK LK+ +N
Sbjct: 60 GRNPKTGDSIKIAASKNPAFKAGKALKDAVN 90
>gi|296133003|ref|YP_003640250.1| histone family protein DNA-binding protein [Thermincola sp. JR]
gi|296031581|gb|ADG82349.1| histone family protein DNA-binding protein [Thermincola potens
JR]
Length = 94
Score = 98.3 bits (244), Expect = 3e-19, Method: Composition-based stats.
Identities = 35/94 (37%), Positives = 53/94 (56%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ L+ +A+K L +D EK VN + + + +ALA G + + GFG+F V++R AR
Sbjct: 1 MTKTDLVAQVAEKVSNLKKKDCEKAVNAVFQSIQEALARGEKAQFIGFGTFEVKQRKARK 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSPD 94
R P K I + VP F+AGK LK+ +
Sbjct: 61 GRNPQTGKEIKIPASKVPVFKAGKALKDAVAKKK 94
>gi|32472422|ref|NP_865416.1| DNA-binding protein HU [Rhodopirellula baltica SH 1]
gi|32443658|emb|CAD73100.1| probable DNA-binding protein HU [Rhodopirellula baltica SH 1]
gi|327538485|gb|EGF25149.1| DNA-binding protein HU [Rhodopirellula baltica WH47]
Length = 139
Score = 98.3 bits (244), Expect = 3e-19, Method: Composition-based stats.
Identities = 30/90 (33%), Positives = 52/90 (57%), Gaps = 1/90 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K ++ I+++ L Q+ +++V + + + L GR+E+R FG F V+ RAAR
Sbjct: 1 MTKKEIVRVISEEL-GLTQQETKEVVQRTFDSIVETLVREGRIELRNFGVFEVKPRAARK 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
AR P + + V EK V F+ GK +++R+
Sbjct: 60 ARNPKTGQQVDVPEKYVVTFKPGKVMEQRV 89
>gi|289163419|ref|YP_003453557.1| integration host factor, beta subunit [Legionella longbeachae
NSW150]
gi|288856592|emb|CBJ10397.1| putative integration host factor, beta subunit [Legionella
longbeachae NSW150]
Length = 102
Score = 98.3 bits (244), Expect = 3e-19, Method: Composition-based stats.
Identities = 39/96 (40%), Positives = 52/96 (54%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
MIKS LI IA + L + V VN +LE M+ AL R+EIRGFGSFS+ R R
Sbjct: 1 MIKSELIEHIASRMTHLTEKQVADGVNRILELMSDALIKNQRIEIRGFGSFSLHYRPPRN 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDST 96
A P + + K P F+ GK L+ER+++
Sbjct: 61 AHNPKTGEKVVTTAKYSPHFKPGKELRERVDASRDK 96
>gi|270158339|ref|ZP_06186996.1| integration host factor, beta subunit [Legionella longbeachae
D-4968]
gi|269990364|gb|EEZ96618.1| integration host factor, beta subunit [Legionella longbeachae
D-4968]
Length = 109
Score = 98.3 bits (244), Expect = 3e-19, Method: Composition-based stats.
Identities = 39/96 (40%), Positives = 52/96 (54%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
MIKS LI IA + L + V VN +LE M+ AL R+EIRGFGSFS+ R R
Sbjct: 8 MIKSELIEHIASRMTHLTEKQVADGVNRILELMSDALIKNQRIEIRGFGSFSLHYRPPRN 67
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDST 96
A P + + K P F+ GK L+ER+++
Sbjct: 68 AHNPKTGEKVVTTAKYSPHFKPGKELRERVDASRDK 103
>gi|260587366|ref|ZP_05853279.1| DNA-binding protein HU [Blautia hansenii DSM 20583]
gi|331083667|ref|ZP_08332778.1| DNA-binding protein HU [Lachnospiraceae bacterium 6_1_63FAA]
gi|260542233|gb|EEX22802.1| DNA-binding protein HU [Blautia hansenii DSM 20583]
gi|330403878|gb|EGG83430.1| DNA-binding protein HU [Lachnospiraceae bacterium 6_1_63FAA]
Length = 91
Score = 98.3 bits (244), Expect = 3e-19, Method: Composition-based stats.
Identities = 27/92 (29%), Positives = 56/92 (60%), Gaps = 1/92 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M ++ L+ +A+K +L+ +D + + ++ +++ + G +V++ GFG+F V +RAAR
Sbjct: 1 MNRTELVAAMAEKT-QLSKKDADLALKAFIDVVSEEMQKGEKVQLVGFGTFEVSERAARE 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P + +++ P F+AGK LK+ +N+
Sbjct: 60 GRNPQTGETMTIAASKSPKFKAGKALKDLVNA 91
>gi|169827490|ref|YP_001697648.1| DNA-binding protein HU [Lysinibacillus sphaericus C3-41]
gi|168991978|gb|ACA39518.1| DNA-binding protein HU (DNA-binding protein II) (HB)
[Lysinibacillus sphaericus C3-41]
Length = 93
Score = 98.3 bits (244), Expect = 3e-19, Method: Composition-based stats.
Identities = 33/90 (36%), Positives = 52/90 (57%), Gaps = 1/90 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ L+ ++A+ L+ +D K V + + + ALA G +V++ GFG+F VR+RAAR
Sbjct: 5 NKTELVNSVAEA-AGLSKKDASKAVEAVFDTIQDALAKGDKVQLIGFGNFEVRERAARKG 63
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P K I + VP F+ GK LK+ +
Sbjct: 64 RNPQTGKEIEIAASKVPAFKPGKALKDAVK 93
>gi|116618389|ref|YP_818760.1| nucleoid protein Hbs [Leuconostoc mesenteroides subsp.
mesenteroides ATCC 8293]
gi|227431692|ref|ZP_03913722.1| non-specific DNA-binding protein HBsu [Leuconostoc mesenteroides
subsp. cremoris ATCC 19254]
gi|116097236|gb|ABJ62387.1| bacterial nucleoid protein Hbs [Leuconostoc mesenteroides subsp.
mesenteroides ATCC 8293]
gi|227352516|gb|EEJ42712.1| non-specific DNA-binding protein HBsu [Leuconostoc mesenteroides
subsp. cremoris ATCC 19254]
Length = 91
Score = 98.3 bits (244), Expect = 3e-19, Method: Composition-based stats.
Identities = 32/90 (35%), Positives = 49/90 (54%), Gaps = 1/90 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K L+ ++AK L +D V+ + + +AL NG +V++ GFG+F VR RAAR
Sbjct: 3 NKQELVDSVAKAT-GLTKKDATASVDAVFASIEEALKNGEKVQLIGFGNFEVRDRAARKG 61
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + I + VP F+ GK LK+ +
Sbjct: 62 RNPQTGEEIQIAASKVPAFKPGKALKDAVK 91
>gi|68250247|ref|YP_249359.1| integration host factor subunit beta [Haemophilus influenzae
86-028NP]
gi|148825815|ref|YP_001290568.1| integration host factor subunit beta [Haemophilus influenzae
PittEE]
gi|81335332|sp|Q4QJU8|IHFB_HAEI8 RecName: Full=Integration host factor subunit beta;
Short=IHF-beta
gi|166918548|sp|A5UBN4|IHFB_HAEIE RecName: Full=Integration host factor subunit beta;
Short=IHF-beta
gi|68058446|gb|AAX88699.1| integration host factor beta-subunit [Haemophilus influenzae
86-028NP]
gi|148715975|gb|ABQ98185.1| integration host factor beta-subunit [Haemophilus influenzae
PittEE]
gi|309972959|gb|ADO96160.1| Integration host factor, beta-subunit [Haemophilus influenzae
R2846]
Length = 94
Score = 98.3 bits (244), Expect = 3e-19, Method: Composition-based stats.
Identities = 40/91 (43%), Positives = 61/91 (67%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS L+ ++ K P L+ +++E +V +LE ++Q+L NG RVE+RGFGSFS+ R RL
Sbjct: 1 MTKSELMEKLSAKQPTLSAKEIENMVKDILEFISQSLENGDRVEVRGFGSFSLHHRQPRL 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P +++ K VP+F+AGK LK R++
Sbjct: 61 GRNPKTGDSVNLSAKSVPYFKAGKELKARVD 91
>gi|294668835|ref|ZP_06733928.1| DNA-binding protein HU-beta [Neisseria elongata subsp.
glycolytica ATCC 29315]
gi|291309352|gb|EFE50595.1| DNA-binding protein HU-beta [Neisseria elongata subsp.
glycolytica ATCC 29315]
Length = 89
Score = 98.3 bits (244), Expect = 3e-19, Method: Composition-based stats.
Identities = 32/90 (35%), Positives = 51/90 (56%), Gaps = 1/90 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI +A++ ++ K ++ ++ +T+AL G V + GFGSF V +RA R
Sbjct: 1 MNKSELIEAMAQE-ADISKAAAAKALDGMVNAITEALKKGDTVTLVGFGSFYVGERAERQ 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P + +++ P FRAGK+LK+ L
Sbjct: 60 GRNPKTGEPLTIAAAKTPKFRAGKSLKDAL 89
>gi|323487339|ref|ZP_08092639.1| hypothetical protein HMPREF9474_04390 [Clostridium symbiosum
WAL-14163]
gi|323694222|ref|ZP_08108398.1| DNA-binding protein HU [Clostridium symbiosum WAL-14673]
gi|323399384|gb|EGA91782.1| hypothetical protein HMPREF9474_04390 [Clostridium symbiosum
WAL-14163]
gi|323501695|gb|EGB17581.1| DNA-binding protein HU [Clostridium symbiosum WAL-14673]
Length = 91
Score = 98.3 bits (244), Expect = 3e-19, Method: Composition-based stats.
Identities = 31/92 (33%), Positives = 54/92 (58%), Gaps = 1/92 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI +A+K +L+ +D EK + + ++ L G ++++ GFG+F V +RAAR
Sbjct: 1 MNKTELIAAVAEK-AELSKKDAEKAIKAFTDVVSDELVKGEKIQLVGFGTFEVAERAARE 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P + + + P F+AGK LK+ +N+
Sbjct: 60 GRNPKTGETMPIAASKTPKFKAGKALKDMVNA 91
>gi|85373566|ref|YP_457628.1| histone-like protein [Erythrobacter litoralis HTCC2594]
gi|84786649|gb|ABC62831.1| histone-like protein [Erythrobacter litoralis HTCC2594]
Length = 90
Score = 98.3 bits (244), Expect = 3e-19, Method: Composition-based stats.
Identities = 32/91 (35%), Positives = 52/91 (57%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI +A + L+ D V + + +T+AL+NG V + GFG+FSV +R A
Sbjct: 1 MNKNDLISAVADAS-GLSKSDASGAVEGVFDSITKALSNGDEVRLVGFGTFSVARRKAST 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + ++++ P F+AGK LK+ +N
Sbjct: 60 GRNPRTGEPMTIKASNQPKFKAGKGLKDAVN 90
>gi|161507461|ref|YP_001577415.1| DNA-binding protein II HB [Lactobacillus helveticus DPC 4571]
gi|260101627|ref|ZP_05751864.1| DNA-binding protein HU [Lactobacillus helveticus DSM 20075]
gi|160348450|gb|ABX27124.1| DNA-binding protein II HB [Lactobacillus helveticus DPC 4571]
gi|260084560|gb|EEW68680.1| DNA-binding protein HU [Lactobacillus helveticus DSM 20075]
Length = 91
Score = 98.3 bits (244), Expect = 3e-19, Method: Composition-based stats.
Identities = 33/89 (37%), Positives = 48/89 (53%), Gaps = 1/89 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ L+ +A K KL ++V V+ + + LA G +V++ GFG+F VR RAAR
Sbjct: 3 NKAELVSEVASKT-KLTKKEVAAAVDAIFGSIQDNLAKGEKVQLIGFGTFEVRHRAARKG 61
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P I + VP F+ GK LKE +
Sbjct: 62 RNPQTGDEIEIPASEVPAFKPGKALKEAV 90
>gi|325571136|ref|ZP_08146708.1| DNA-binding protein HU [Enterococcus casseliflavus ATCC 12755]
gi|325156221|gb|EGC68407.1| DNA-binding protein HU [Enterococcus casseliflavus ATCC 12755]
Length = 103
Score = 98.3 bits (244), Expect = 3e-19, Method: Composition-based stats.
Identities = 32/90 (35%), Positives = 47/90 (52%), Gaps = 1/90 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ LI +A L +D V+ + + ALANG +V++ GFG+F VR RA R
Sbjct: 15 NKAELIEKVAAAT-DLTKKDATAAVDAVFSTIQDALANGEKVQLIGFGNFEVRSRAERKG 73
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + I + VP F+ GK LK+ +
Sbjct: 74 RNPQTGEEIKIPASKVPAFKPGKALKDAVK 103
>gi|78358253|ref|YP_389702.1| histone-like DNA-binding protein [Desulfovibrio desulfuricans
subsp. desulfuricans str. G20]
gi|78220658|gb|ABB40007.1| histone-like DNA-binding protein [Desulfovibrio desulfuricans
subsp. desulfuricans str. G20]
Length = 91
Score = 98.3 bits (244), Expect = 3e-19, Method: Composition-based stats.
Identities = 36/91 (39%), Positives = 52/91 (57%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS L+ T+A+ L+ + +VN + + +AL G RVEIRGFGSF V++ +
Sbjct: 1 MNKSELVKTLAEDY-NLSQDEAVAVVNTFFDSVREALVAGDRVEIRGFGSFKVKEYKGYV 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + V K +P FRAGK +KE +N
Sbjct: 60 GRNPKTGDSVKVSPKRLPVFRAGKEMKELVN 90
>gi|313884094|ref|ZP_07817860.1| DNA-binding protein HU [Eremococcus coleocola ACS-139-V-Col8]
gi|312620541|gb|EFR31964.1| DNA-binding protein HU [Eremococcus coleocola ACS-139-V-Col8]
Length = 91
Score = 98.3 bits (244), Expect = 3e-19, Method: Composition-based stats.
Identities = 36/90 (40%), Positives = 52/90 (57%), Gaps = 1/90 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ L+ +A K L +DV V L E + + LANG +V++ GFG+F VR+RAAR
Sbjct: 3 NKAELVEQVAAKT-NLTKKDVTATVEALFETIQETLANGEKVQVIGFGTFEVRERAARKG 61
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + I + VP F+AGK LK+ +
Sbjct: 62 RNPQTGEEIEIAATKVPGFKAGKALKDAVK 91
>gi|294012154|ref|YP_003545614.1| DNA-binding protein HU-beta [Sphingobium japonicum UT26S]
gi|292675484|dbj|BAI97002.1| DNA-binding protein HU-beta [Sphingobium japonicum UT26S]
Length = 90
Score = 98.3 bits (244), Expect = 3e-19, Method: Composition-based stats.
Identities = 32/91 (35%), Positives = 50/91 (54%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K LI +A+ + L+ D K V + + +T AL G V + GFG+FSV +R A
Sbjct: 1 MNKQDLISAVAE-SSGLSKSDASKAVEGVFDAITGALKKGDEVRLVGFGTFSVSQRKAST 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + ++++ P F+AGK LK+ +N
Sbjct: 60 GRNPRTGETMTIKASAQPKFKAGKGLKDSVN 90
>gi|120603250|ref|YP_967650.1| histone family protein DNA-binding protein [Desulfovibrio
vulgaris DP4]
gi|46448590|gb|AAS95244.1| DNA-binding protein HU [Desulfovibrio vulgaris str.
Hildenborough]
gi|120563479|gb|ABM29223.1| histone family protein DNA-binding protein [Desulfovibrio
vulgaris DP4]
Length = 91
Score = 98.3 bits (244), Expect = 3e-19, Method: Composition-based stats.
Identities = 29/91 (31%), Positives = 40/91 (43%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ L+ I K E ++ + + A+A G V GFGSF V RAAR
Sbjct: 1 MTKAELVEKIHAKAGLATKAQAESALDATIAVLADAMAAGESVTFTGFGSFKVADRAARK 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + I + V F GK LK+ +
Sbjct: 61 GRNPRTGEEIVIPAGKVVKFTPGKLLKDAVK 91
>gi|168187043|ref|ZP_02621678.1| DNA-binding protein HU [Clostridium botulinum C str. Eklund]
gi|169295104|gb|EDS77237.1| DNA-binding protein HU [Clostridium botulinum C str. Eklund]
Length = 92
Score = 98.3 bits (244), Expect = 4e-19, Method: Composition-based stats.
Identities = 36/93 (38%), Positives = 59/93 (63%), Gaps = 1/93 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI ++A+K+ +L +DVE + +E + +AL +G +V++ GFG+F R+RA R
Sbjct: 1 MNKSELITSMAEKS-QLTKKDVEVALKAFIESVEEALMDGEKVQLVGFGTFETRERAERK 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSP 93
R P ++ I++ VP F+AGK KE +N+
Sbjct: 60 GRNPRTKEEITIPAATVPVFKAGKEFKEIVNNK 92
>gi|317484455|ref|ZP_07943367.1| bacterial DNA-binding protein [Bilophila wadsworthia 3_1_6]
gi|316924279|gb|EFV45453.1| bacterial DNA-binding protein [Bilophila wadsworthia 3_1_6]
Length = 110
Score = 97.9 bits (243), Expect = 4e-19, Method: Composition-based stats.
Identities = 31/92 (33%), Positives = 47/92 (51%), Gaps = 1/92 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ L+ IA + + E+ +N +LE + + LA G++ + GFG+F R R
Sbjct: 20 MTKADLVAQIAAR-ANMTKAAAERSLNAMLESVQEMLAEDGKLTLTGFGTFVAETRQERQ 78
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P VI++ V FR GK LK+ LN
Sbjct: 79 GRNPRTGDVITIAASKVVRFRPGKMLKDALNK 110
>gi|56751859|ref|YP_172560.1| DNA-binding protein HU [Synechococcus elongatus PCC 6301]
gi|81301057|ref|YP_401265.1| nucleoid protein Hbs [Synechococcus elongatus PCC 7942]
gi|56686818|dbj|BAD80040.1| DNA binding protein HU [Synechococcus elongatus PCC 6301]
gi|81169938|gb|ABB58278.1| bacterial nucleoid protein Hbs [Synechococcus elongatus PCC 7942]
Length = 91
Score = 97.9 bits (243), Expect = 4e-19, Method: Composition-based stats.
Identities = 29/90 (32%), Positives = 44/90 (48%), Gaps = 1/90 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K LI +A + L V ++ L++ + + G +V I GFG+F R+R+ R
Sbjct: 1 MNKGELIDQVAVRT-GLTKVQVAAAIDALVDVIVDTVVEGEKVSILGFGAFEARERSERQ 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
P I + K VP F AGK K+R+
Sbjct: 60 GLNPKTGDKILIPAKKVPAFTAGKLFKDRV 89
>gi|307292720|ref|ZP_07572566.1| histone family protein DNA-binding protein [Sphingobium
chlorophenolicum L-1]
gi|306880786|gb|EFN12002.1| histone family protein DNA-binding protein [Sphingobium
chlorophenolicum L-1]
Length = 90
Score = 97.9 bits (243), Expect = 4e-19, Method: Composition-based stats.
Identities = 33/91 (36%), Positives = 51/91 (56%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K LIG +A+ + L+ D K V + + +T AL G V + GFG+FSV +R A
Sbjct: 1 MNKQDLIGAVAE-SSGLSKSDASKAVEGVFDAITGALKKGDEVRLVGFGTFSVSQRKAST 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + ++++ P F+AGK LK+ +N
Sbjct: 60 GRNPRTGETMTIKASAQPKFKAGKGLKDSVN 90
>gi|331092508|ref|ZP_08341330.1| DNA-binding protein HU [Lachnospiraceae bacterium 2_1_46FAA]
gi|330400729|gb|EGG80332.1| DNA-binding protein HU [Lachnospiraceae bacterium 2_1_46FAA]
Length = 91
Score = 97.9 bits (243), Expect = 4e-19, Method: Composition-based stats.
Identities = 35/91 (38%), Positives = 56/91 (61%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI +A+ N +L+ +D EK + +E +T+ L G ++++ GFG+F V +RAAR
Sbjct: 1 MNKTELITAVAE-NAELSKKDAEKALKAFVEVVTEELKKGEKIQLVGFGTFEVSERAARE 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P K +S+ VP F+ GK LK+ +N
Sbjct: 60 GRNPQTGKTMSIAACKVPKFKVGKALKDAVN 90
>gi|329114632|ref|ZP_08243391.1| Integration host factor subunit beta [Acetobacter pomorum DM001]
gi|326696112|gb|EGE47794.1| Integration host factor subunit beta [Acetobacter pomorum DM001]
Length = 109
Score = 97.9 bits (243), Expect = 4e-19, Method: Composition-based stats.
Identities = 41/93 (44%), Positives = 62/93 (66%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M +S LI + +KNP L ++ ++VN++ +T +LA G RVE+RGFG+FSV++R R+
Sbjct: 6 MTRSELITALMQKNPHLQLKEATRLVNIVFGTITSSLAEGSRVELRGFGAFSVKERDPRV 65
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSP 93
R P + V +K+VPFF+ GK L +RLN P
Sbjct: 66 GRNPKTGVQVQVGKKLVPFFKTGKELHQRLNKP 98
>gi|52425530|ref|YP_088667.1| HimA protein [Mannheimia succiniciproducens MBEL55E]
gi|81691358|sp|Q65SH8|IHFB_MANSM RecName: Full=Integration host factor subunit beta;
Short=IHF-beta
gi|52307582|gb|AAU38082.1| HimA protein [Mannheimia succiniciproducens MBEL55E]
Length = 94
Score = 97.9 bits (243), Expect = 4e-19, Method: Composition-based stats.
Identities = 41/91 (45%), Positives = 60/91 (65%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI ++ +KN ++ + VE V +LE M+QAL +G R+EIRGFGSFS+ R R+
Sbjct: 1 MTKSELIESLVEKNHSISVKSVENAVKEILEHMSQALESGDRIEIRGFGSFSLHFRQPRV 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + ++ K VP F+AGK L+ER++
Sbjct: 61 GRNPKTGAQVKLDAKCVPHFKAGKELRERVD 91
>gi|237746607|ref|ZP_04577087.1| DNA-binding protein Hu-beta [Oxalobacter formigenes HOxBLS]
gi|229377958|gb|EEO28049.1| DNA-binding protein Hu-beta [Oxalobacter formigenes HOxBLS]
Length = 90
Score = 97.9 bits (243), Expect = 4e-19, Method: Composition-based stats.
Identities = 35/91 (38%), Positives = 54/91 (59%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI IA K+ ++ + ++ ++E +T+ L G V + GFG+FSV +RAAR
Sbjct: 1 MNKTELIEYIA-KSADISKAAAARSLDAVMEAITETLKKDGSVTLVGFGTFSVGERAARS 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + I ++ VP FRAGK LK+ +N
Sbjct: 60 GRNPRTGEEIKIKSARVPKFRAGKLLKDAVN 90
>gi|198449285|ref|YP_002221439.1| DNA binding protein HU-beta [Burkholderia phage KS10]
gi|206559950|ref|YP_002230714.1| histone-like DNA-binding phage protein [Burkholderia cenocepacia
J2315]
gi|197725446|gb|ACH72942.1| gp23 [Burkholderia phage KS10]
gi|198035991|emb|CAR51884.1| histone-like DNA-binding phage protein [Burkholderia cenocepacia
J2315]
Length = 90
Score = 97.9 bits (243), Expect = 4e-19, Method: Composition-based stats.
Identities = 31/91 (34%), Positives = 44/91 (48%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI +A KN +L + V +L + L G V + GFG+F+V R AR
Sbjct: 1 MNKSQLIDAVA-KNAELTKAQAAQSVEAVLNAIQLGLQEDGDVALSGFGTFAVAARKART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + I + F+ GK LK+ +N
Sbjct: 60 GRNPATGESIQIAASKAVKFKPGKALKDAVN 90
>gi|116333426|ref|YP_794953.1| nucleoid DNA-binding protein [Lactobacillus brevis ATCC 367]
gi|116098773|gb|ABJ63922.1| bacterial nucleoid protein Hbs [Lactobacillus brevis ATCC 367]
Length = 91
Score = 97.9 bits (243), Expect = 4e-19, Method: Composition-based stats.
Identities = 30/90 (33%), Positives = 48/90 (53%), Gaps = 1/90 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ L+ +A L +D V+ + + + LA G +V++ GFG+F VR+RAAR
Sbjct: 3 NKAQLVSDVATAT-GLTKKDATAAVDAVFDSVQATLAKGEKVQLIGFGNFEVRERAARKG 61
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + I + VP F+ GK LK+ +
Sbjct: 62 RNPQTGQEIQIPASKVPAFKPGKALKDAVK 91
>gi|37681329|ref|NP_935938.1| nucleoid DNA-binding protein [Vibrio vulnificus YJ016]
gi|37200080|dbj|BAC95909.1| bacterial nucleoid DNA-binding protein [Vibrio vulnificus YJ016]
Length = 101
Score = 97.9 bits (243), Expect = 4e-19, Method: Composition-based stats.
Identities = 36/91 (39%), Positives = 48/91 (52%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI IA+K L+ + + L +T AL G +V++ GFG+F V RAAR
Sbjct: 12 MNKTQLIDFIAEK-ADLSKAQAKAALEATLNGVTDALKEGDQVQLIGFGTFKVNHRAART 70
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P I + VP F AGK LKE +N
Sbjct: 71 GRNPKTGDEIQIAAANVPAFVAGKALKESVN 101
>gi|254780748|ref|YP_003065161.1| integration host factor, beta subunit [Candidatus Liberibacter
asiaticus str. psy62]
gi|254040425|gb|ACT57221.1| integration host factor, beta subunit [Candidatus Liberibacter
asiaticus str. psy62]
Length = 100
Score = 97.9 bits (243), Expect = 4e-19, Method: Composition-based stats.
Identities = 100/100 (100%), Positives = 100/100 (100%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL
Sbjct: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDSTLSNS 100
ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDSTLSNS
Sbjct: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDSTLSNS 100
>gi|16273140|ref|NP_439377.1| integration host factor subunit beta [Haemophilus influenzae Rd
KW20]
gi|260581140|ref|ZP_05848960.1| integration host factor, beta subunit [Haemophilus influenzae
RdAW]
gi|1170525|sp|P43724|IHFB_HAEIN RecName: Full=Integration host factor subunit beta;
Short=IHF-beta
gi|1574152|gb|AAC22874.1| integration host factor, beta-subunit (himD) [Haemophilus
influenzae Rd KW20]
gi|260092168|gb|EEW76111.1| integration host factor, beta subunit [Haemophilus influenzae
RdAW]
Length = 94
Score = 97.9 bits (243), Expect = 4e-19, Method: Composition-based stats.
Identities = 40/91 (43%), Positives = 60/91 (65%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS L+ ++ K P L +++E +V +LE ++Q+L NG RVE+RGFGSFS+ R RL
Sbjct: 1 MTKSELMEKLSAKQPTLPAKEIENMVKGILEFISQSLENGDRVEVRGFGSFSLHHRQPRL 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P +++ K VP+F+AGK LK R++
Sbjct: 61 GRNPKTGDSVNLSAKSVPYFKAGKELKARVD 91
>gi|330752075|emb|CBL80585.1| histone-like bacterial DNA-binding protein [uncultured
Leeuwenhoekiella sp.]
Length = 90
Score = 97.9 bits (243), Expect = 4e-19, Method: Composition-based stats.
Identities = 33/91 (36%), Positives = 51/91 (56%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI +A+ + + +K + L + ++L +G RV + GFGS+SV +RAAR
Sbjct: 1 MNKSDLIDAMAE-SAGITKAAAKKALESFLGNVEKSLKSGDRVSLVGFGSWSVSQRAARE 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P K I + K V F+AG +L + +N
Sbjct: 60 GRNPQTGKTIQIAAKNVVKFKAGSDLSDAVN 90
>gi|323143441|ref|ZP_08078124.1| DNA-binding protein HU-beta [Succinatimonas hippei YIT 12066]
gi|322416726|gb|EFY07377.1| DNA-binding protein HU-beta [Succinatimonas hippei YIT 12066]
Length = 91
Score = 97.9 bits (243), Expect = 4e-19, Method: Composition-based stats.
Identities = 35/91 (38%), Positives = 55/91 (60%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS L+ +IAK++ L+ +D +N LE + LA G + + GFG+F VR RAAR+
Sbjct: 1 MNKSQLVSSIAKQS-GLSLKDSNAALNAFLETVKDTLAKGDSISLVGFGTFLVRDRAARV 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P ++ + + VP F+AGK K+++N
Sbjct: 60 GRNPRTKEEVKIPAVKVPAFKAGKPFKDKVN 90
>gi|325294223|ref|YP_004280737.1| histone family protein DNA-binding protein [Desulfurobacterium
thermolithotrophum DSM 11699]
gi|325064671|gb|ADY72678.1| histone family protein DNA-binding protein [Desulfurobacterium
thermolithotrophum DSM 11699]
Length = 93
Score = 97.9 bits (243), Expect = 4e-19, Method: Composition-based stats.
Identities = 38/89 (42%), Positives = 58/89 (65%), Gaps = 1/89 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS L+ IA+K + +D E +N ++ +T+ALA G +VEIRGFG+F +++RA R+
Sbjct: 1 MTKSDLVAAIAEK-AGIRKKDAEAALNGFIDVVTEALAKGEKVEIRGFGTFLMKERAPRV 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKER 89
AR P + + V K+ P F+ GK+LKE
Sbjct: 60 ARNPRTGEKVEVPAKLSPAFKPGKDLKEA 88
>gi|116749538|ref|YP_846225.1| histone family protein DNA-binding protein [Syntrophobacter
fumaroxidans MPOB]
gi|116698602|gb|ABK17790.1| histone family protein DNA-binding protein [Syntrophobacter
fumaroxidans MPOB]
Length = 90
Score = 97.9 bits (243), Expect = 4e-19, Method: Composition-based stats.
Identities = 29/91 (31%), Positives = 48/91 (52%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ L+ IA + EK V+ + ++QAL+ G +V + GFG+FSV R+ R
Sbjct: 1 MTKADLVSKIAGA-GGITKAQAEKAVDGFVAAVSQALSTGEKVTLVGFGTFSVGSRSQRE 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + I + V F+ GK+L +++
Sbjct: 60 GRNPRTGEKIKIPASKVVKFKPGKSLSDKVK 90
>gi|123969052|ref|YP_001009910.1| histone-like DNA-binding protein [Prochlorococcus marinus str.
AS9601]
gi|126696845|ref|YP_001091731.1| histone-like DNA-binding protein [Prochlorococcus marinus str.
MIT 9301]
gi|157413883|ref|YP_001484749.1| histone-like DNA-binding protein [Prochlorococcus marinus str.
MIT 9215]
gi|254526156|ref|ZP_05138208.1| bacterial nucleoid DNA-binding protein [Prochlorococcus marinus
str. MIT 9202]
gi|91070374|gb|ABE11288.1| bacterial histone-like DNA-binding protein [uncultured
Prochlorococcus marinus clone HF10-88H9]
gi|123199162|gb|ABM70803.1| Bacterial histone-like DNA-binding protein [Prochlorococcus
marinus str. AS9601]
gi|126543888|gb|ABO18130.1| Bacterial histone-like DNA-binding protein [Prochlorococcus
marinus str. MIT 9301]
gi|157388458|gb|ABV51163.1| Histone-like DNA-binding protein [Prochlorococcus marinus str.
MIT 9215]
gi|221537580|gb|EEE40033.1| bacterial nucleoid DNA-binding protein [Prochlorococcus marinus
str. MIT 9202]
Length = 91
Score = 97.9 bits (243), Expect = 4e-19, Method: Composition-based stats.
Identities = 31/90 (34%), Positives = 50/90 (55%), Gaps = 1/90 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ L+ +A + +L DV +V+ +E + ++ G +V + GFGSF R R+AR
Sbjct: 1 MNKADLVNLVAART-ELTKTDVSLVVDAAIETIVDSVVEGKKVSLLGFGSFEPRDRSARQ 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
P + I++ K VP F AGK K+R+
Sbjct: 60 GLNPKTGEKIAIPAKRVPTFSAGKLFKDRV 89
>gi|53728750|ref|ZP_00135487.2| COG0776: Bacterial nucleoid DNA-binding protein [Actinobacillus
pleuropneumoniae serovar 1 str. 4074]
gi|126208219|ref|YP_001053444.1| integration host factor subunit beta [Actinobacillus
pleuropneumoniae L20]
gi|165976155|ref|YP_001651748.1| integration host factor subunit beta [Actinobacillus
pleuropneumoniae serovar 3 str. JL03]
gi|190150051|ref|YP_001968576.1| integration host factor beta-subunit [Actinobacillus
pleuropneumoniae serovar 7 str. AP76]
gi|303251469|ref|ZP_07337645.1| integration host factor, beta subunit [Actinobacillus
pleuropneumoniae serovar 6 str. Femo]
gi|303252342|ref|ZP_07338508.1| integration host factor, beta subunit [Actinobacillus
pleuropneumoniae serovar 2 str. 4226]
gi|307245599|ref|ZP_07527685.1| Integration host factor subunit beta [Actinobacillus
pleuropneumoniae serovar 1 str. 4074]
gi|307247719|ref|ZP_07529757.1| Integration host factor subunit beta [Actinobacillus
pleuropneumoniae serovar 2 str. S1536]
gi|307249952|ref|ZP_07531924.1| Integration host factor subunit beta [Actinobacillus
pleuropneumoniae serovar 4 str. M62]
gi|307252295|ref|ZP_07534192.1| Integration host factor subunit beta [Actinobacillus
pleuropneumoniae serovar 6 str. Femo]
gi|307254555|ref|ZP_07536389.1| Integration host factor subunit beta [Actinobacillus
pleuropneumoniae serovar 9 str. CVJ13261]
gi|307256762|ref|ZP_07538541.1| Integration host factor subunit beta [Actinobacillus
pleuropneumoniae serovar 10 str. D13039]
gi|307259009|ref|ZP_07540740.1| Integration host factor subunit beta [Actinobacillus
pleuropneumoniae serovar 11 str. 56153]
gi|307261205|ref|ZP_07542880.1| Integration host factor subunit beta [Actinobacillus
pleuropneumoniae serovar 12 str. 1096]
gi|307263384|ref|ZP_07545000.1| Integration host factor subunit beta [Actinobacillus
pleuropneumoniae serovar 13 str. N273]
gi|166918536|sp|A3N0A3|IHFB_ACTP2 RecName: Full=Integration host factor subunit beta;
Short=IHF-beta
gi|226709766|sp|B3GXH5|IHFB_ACTP7 RecName: Full=Integration host factor subunit beta;
Short=IHF-beta
gi|226709767|sp|B0BP19|IHFB_ACTPJ RecName: Full=Integration host factor subunit beta;
Short=IHF-beta
gi|126097011|gb|ABN73839.1| integration host factor beta-subunit [Actinobacillus
pleuropneumoniae serovar 5b str. L20]
gi|165876256|gb|ABY69304.1| integration host factor, beta subunit [Actinobacillus
pleuropneumoniae serovar 3 str. JL03]
gi|189915182|gb|ACE61434.1| integration host factor beta-subunit [Actinobacillus
pleuropneumoniae serovar 7 str. AP76]
gi|302648801|gb|EFL78991.1| integration host factor, beta subunit [Actinobacillus
pleuropneumoniae serovar 2 str. 4226]
gi|302649701|gb|EFL79881.1| integration host factor, beta subunit [Actinobacillus
pleuropneumoniae serovar 6 str. Femo]
gi|306853301|gb|EFM85520.1| Integration host factor subunit beta [Actinobacillus
pleuropneumoniae serovar 1 str. 4074]
gi|306855749|gb|EFM87914.1| Integration host factor subunit beta [Actinobacillus
pleuropneumoniae serovar 2 str. S1536]
gi|306858012|gb|EFM90096.1| Integration host factor subunit beta [Actinobacillus
pleuropneumoniae serovar 4 str. M62]
gi|306860217|gb|EFM92233.1| Integration host factor subunit beta [Actinobacillus
pleuropneumoniae serovar 6 str. Femo]
gi|306862492|gb|EFM94452.1| Integration host factor subunit beta [Actinobacillus
pleuropneumoniae serovar 9 str. CVJ13261]
gi|306864810|gb|EFM96714.1| Integration host factor subunit beta [Actinobacillus
pleuropneumoniae serovar 10 str. D13039]
gi|306867033|gb|EFM98890.1| Integration host factor subunit beta [Actinobacillus
pleuropneumoniae serovar 11 str. 56153]
gi|306868936|gb|EFN00738.1| Integration host factor subunit beta [Actinobacillus
pleuropneumoniae serovar 12 str. 1096]
gi|306871262|gb|EFN02990.1| Integration host factor subunit beta [Actinobacillus
pleuropneumoniae serovar 13 str. N273]
Length = 93
Score = 97.9 bits (243), Expect = 4e-19, Method: Composition-based stats.
Identities = 40/91 (43%), Positives = 56/91 (61%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI + NP L + VE V +LE++ L G RVE+RGFGSFS+ R R+
Sbjct: 1 MTKSELIENLVSLNPALQVKSVEDGVKEILEQIMLFLERGERVEVRGFGSFSLHYRQPRV 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + + ++ K VP F+AGK+LKER++
Sbjct: 61 GRNPKTGESVKLDAKYVPHFKAGKDLKERVD 91
>gi|149190645|ref|ZP_01868913.1| bacterial nucleoid DNA-binding protein [Vibrio shilonii AK1]
gi|148835528|gb|EDL52497.1| bacterial nucleoid DNA-binding protein [Vibrio shilonii AK1]
Length = 90
Score = 97.9 bits (243), Expect = 4e-19, Method: Composition-based stats.
Identities = 33/91 (36%), Positives = 49/91 (53%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI IA+K L+ + + L +++AL G +V++ GFG+F V RAAR
Sbjct: 1 MNKTQLIDFIAEK-ADLSKAQAKAALEATLSGVSEALTEGDQVQLIGFGTFKVNHRAART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + I + VP F AGK LK+ +
Sbjct: 60 GRNPKTGEEIQIAAANVPAFVAGKALKDAVK 90
>gi|328957353|ref|YP_004374739.1| non-specific DNA-binding protein HBsu; signal recognition
particle-like (SRP) component [Carnobacterium sp. 17-4]
gi|328673677|gb|AEB29723.1| non-specific DNA-binding protein HBsu; signal recognition
particle-like (SRP) component [Carnobacterium sp. 17-4]
Length = 91
Score = 97.9 bits (243), Expect = 4e-19, Method: Composition-based stats.
Identities = 32/90 (35%), Positives = 48/90 (53%), Gaps = 1/90 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ LI +A L +D V+ + E + +L+ G +V+I GFG+F VR RAAR
Sbjct: 3 NKAELIENVATST-GLTKKDATSAVDAVFESIQTSLSEGEKVQIIGFGNFEVRDRAARKG 61
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + I + VP F+ GK LK+ +
Sbjct: 62 RNPQTGEEIQIAASKVPAFKPGKALKDAVK 91
>gi|238021485|ref|ZP_04601911.1| hypothetical protein GCWU000324_01385 [Kingella oralis ATCC
51147]
gi|237868465|gb|EEP69471.1| hypothetical protein GCWU000324_01385 [Kingella oralis ATCC
51147]
Length = 101
Score = 97.9 bits (243), Expect = 4e-19, Method: Composition-based stats.
Identities = 33/88 (37%), Positives = 46/88 (52%), Gaps = 1/88 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI IA++ L D K V+ + AL +G + + GFG+F V +RAAR
Sbjct: 1 MNKSELIEAIAQQ-AGLTKTDAGKAVDAFTAVVKDALKSGDSIALVGFGTFKVAERAARQ 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKE 88
P ++ I + VP F AGK LK+
Sbjct: 60 GLNPRTKEAIKIPAARVPKFTAGKTLKD 87
>gi|332653755|ref|ZP_08419499.1| DNA-binding protein HU [Ruminococcaceae bacterium D16]
gi|332516841|gb|EGJ46446.1| DNA-binding protein HU [Ruminococcaceae bacterium D16]
Length = 91
Score = 97.9 bits (243), Expect = 4e-19, Method: Composition-based stats.
Identities = 33/90 (36%), Positives = 52/90 (57%), Gaps = 1/90 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI +A K +L+ +D E + +E + +AL +V++ GFGSF V+ RAAR+
Sbjct: 1 MNKTELINAVADKT-QLSKKDAEAAITATVEAIAEALTREEKVQLVGFGSFEVKTRAARV 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P I + + P F+AGK LK+ +
Sbjct: 60 GRNPKTGTEIEIPQTKTPVFKAGKALKDAV 89
>gi|291279805|ref|YP_003496640.1| integration host factor, subunit beta [Deferribacter
desulfuricans SSM1]
gi|290754507|dbj|BAI80884.1| integration host factor, beta subunit [Deferribacter
desulfuricans SSM1]
Length = 97
Score = 97.9 bits (243), Expect = 4e-19, Method: Composition-based stats.
Identities = 40/90 (44%), Positives = 58/90 (64%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI I +K PKL + +E IVN + + +AL NG VEIRGFGSF +R++ A++
Sbjct: 1 MTKSQLIEIITEKYPKLTKKQIEFIVNGVFNTIKEALKNGEPVEIRGFGSFKIRQKEAKV 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P + + + K VP+F+ GK +KE+L
Sbjct: 61 GRNPKTGETVQIPAKKVPYFKPGKEIKEQL 90
>gi|253996687|ref|YP_003048751.1| histone family protein DNA-binding protein [Methylotenera mobilis
JLW8]
gi|253983366|gb|ACT48224.1| histone family protein DNA-binding protein [Methylotenera mobilis
JLW8]
Length = 90
Score = 97.9 bits (243), Expect = 4e-19, Method: Composition-based stats.
Identities = 32/91 (35%), Positives = 47/91 (51%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI IA ++ + ++ +T+A+ G V + GFG+F V KR AR
Sbjct: 1 MNKSELIDEIASA-AGISKAAAGRALDATTAAITKAIKKGDLVTLIGFGTFYVGKREARN 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + I ++ P FRAGK LK+ +N
Sbjct: 60 GRNPRTGETIKIQAANSPKFRAGKALKDAVN 90
>gi|299065160|emb|CBJ36324.1| DNA-binding protein HU-beta, NS1 (HU-1), plays a role in DNA
replication and in rpo translation [Ralstonia
solanacearum CMR15]
Length = 92
Score = 97.9 bits (243), Expect = 4e-19, Method: Composition-based stats.
Identities = 31/92 (33%), Positives = 51/92 (55%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI IA L E+ +N+ L+ + +++ +G V + GFG+FS +RA R+
Sbjct: 1 MTKTELIDAIASGVDGLTKAKAEQALNVTLQAIMESVGSGDTVSLIGFGTFSQGERAERM 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
AR P + I VE F+AG+ K+ +N+
Sbjct: 61 ARNPRTGEEIKVEAAKTVKFKAGQKFKDAVNA 92
>gi|170017043|ref|YP_001727962.1| nucleoid DNA-binding protein [Leuconostoc citreum KM20]
gi|169803900|gb|ACA82518.1| Bacterial nucleoid DNA-binding protein [Leuconostoc citreum KM20]
Length = 91
Score = 97.9 bits (243), Expect = 4e-19, Method: Composition-based stats.
Identities = 33/90 (36%), Positives = 48/90 (53%), Gaps = 1/90 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K L+ ++AK L +D V+ + + +AL NG +V++ GFG+F VR RAAR
Sbjct: 3 NKQELVDSVAKAT-GLTKKDATASVDAVFASIEEALKNGEKVQLIGFGNFEVRDRAARKG 61
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P I + VP F+ GK LKE +
Sbjct: 62 RNPQTGAEIEIPASKVPAFKPGKALKEAVK 91
>gi|78046640|ref|YP_362815.1| histone-like protein [Xanthomonas campestris pv. vesicatoria str.
85-10]
gi|78035070|emb|CAJ22715.1| histone-like protein [Xanthomonas campestris pv. vesicatoria str.
85-10]
Length = 90
Score = 97.9 bits (243), Expect = 4e-19, Method: Composition-based stats.
Identities = 32/91 (35%), Positives = 50/91 (54%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI +A ++ + + V+ ++ E+T+AL G V + GFG+F VR+RA R
Sbjct: 1 MNKTELIDGVAAA-ADISKAEASRAVDAVVSEITKALKKGDAVTLVGFGTFQVRERAERT 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P I + P F+AGK LK+ +N
Sbjct: 60 GRNPKTGDSIKIAASKNPAFKAGKALKDAVN 90
>gi|154505532|ref|ZP_02042270.1| hypothetical protein RUMGNA_03069 [Ruminococcus gnavus ATCC
29149]
gi|153794190|gb|EDN76610.1| hypothetical protein RUMGNA_03069 [Ruminococcus gnavus ATCC
29149]
Length = 91
Score = 97.9 bits (243), Expect = 4e-19, Method: Composition-based stats.
Identities = 33/92 (35%), Positives = 56/92 (60%), Gaps = 1/92 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI IA++ +++ +D EK + ++ +T+ L G +V++ GFG+F V +RAAR
Sbjct: 1 MNKTELIAAIAEQ-AEISKKDAEKALKAFVDVVTEQLKEGEKVQLVGFGTFEVSERAARE 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P K + + P F+AGK LK+ +N+
Sbjct: 60 GRNPQTGKTMKIAACKAPKFKAGKALKDAVNA 91
>gi|73543074|ref|YP_297594.1| HU family DNA-binding protein [Ralstonia eutropha JMP134]
gi|72120487|gb|AAZ62750.1| HU family DNA-binding protein [Ralstonia eutropha JMP134]
Length = 92
Score = 97.9 bits (243), Expect = 4e-19, Method: Composition-based stats.
Identities = 32/92 (34%), Positives = 48/92 (52%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI IA L E+ +N+ L + A+ANG + + GFG+FS +R R+
Sbjct: 1 MTKTELIDAIAAGVDGLTKAKAEQALNVTLSAIMDAVANGDTLSLVGFGTFSKGERGERM 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
AR P + I VE F+AG+ K+ +N
Sbjct: 61 ARNPRTGEEIKVEAAKTVKFKAGQKFKDAVNQ 92
>gi|17548076|ref|NP_521478.1| histone-like DNA-binding protein HU-beta (NS1) [Ralstonia
solanacearum GMI1000]
gi|17430382|emb|CAD17147.1| probable histone-like dna-binding protein hu-beta (ns1)
[Ralstonia solanacearum GMI1000]
Length = 92
Score = 97.9 bits (243), Expect = 4e-19, Method: Composition-based stats.
Identities = 32/92 (34%), Positives = 51/92 (55%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI IA L E+ +N+ L+ + +++ NG V + GFG+FS +RA R+
Sbjct: 1 MTKTELIDAIASGVDGLTKAKAEQALNVTLQAIMESVGNGDTVSLIGFGTFSQGERAERM 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
AR P + I VE F+AG+ K+ +N+
Sbjct: 61 ARNPRTGEEIKVEAAKTVKFKAGQKFKDAVNA 92
>gi|332704210|ref|ZP_08424298.1| histone family protein DNA-binding protein [Desulfovibrio
africanus str. Walvis Bay]
gi|332554359|gb|EGJ51403.1| histone family protein DNA-binding protein [Desulfovibrio
africanus str. Walvis Bay]
Length = 90
Score = 97.9 bits (243), Expect = 4e-19, Method: Composition-based stats.
Identities = 28/91 (30%), Positives = 48/91 (52%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ L+ I++K ++ D E+ +N L+ + L G++ + GFG+F+V +R R
Sbjct: 1 MTKADLVAKISEKAA-ISKADAERSLNAFLDAVGSTLVGEGKLTLTGFGTFAVEERKERT 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + I + V FR GK LK+ +
Sbjct: 60 GRNPRTGEEIKIPATKVVKFRPGKLLKDAVK 90
>gi|145629273|ref|ZP_01785072.1| integration host factor beta-subunit [Haemophilus influenzae
22.1-21]
gi|145633319|ref|ZP_01789050.1| hypothetical protein CGSHi3655_03781 [Haemophilus influenzae
3655]
gi|145634450|ref|ZP_01790160.1| hypothetical protein CGSHiAA_06654 [Haemophilus influenzae
PittAA]
gi|145636917|ref|ZP_01792582.1| hypothetical protein CGSHiHH_01512 [Haemophilus influenzae
PittHH]
gi|145641112|ref|ZP_01796693.1| integration host factor beta-subunit [Haemophilus influenzae
R3021]
gi|148827069|ref|YP_001291822.1| integration host factor subunit beta [Haemophilus influenzae
PittGG]
gi|166918549|sp|A5UF83|IHFB_HAEIG RecName: Full=Integration host factor subunit beta;
Short=IHF-beta
gi|144978776|gb|EDJ88499.1| integration host factor beta-subunit [Haemophilus influenzae
22.1-21]
gi|144986165|gb|EDJ92755.1| hypothetical protein CGSHi3655_03781 [Haemophilus influenzae
3655]
gi|145268430|gb|EDK08424.1| hypothetical protein CGSHiAA_06654 [Haemophilus influenzae
PittAA]
gi|145269998|gb|EDK09936.1| hypothetical protein CGSHiHH_01512 [Haemophilus influenzae
PittHH]
gi|145274273|gb|EDK14138.1| integration host factor beta-subunit [Haemophilus influenzae
22.4-21]
gi|148718311|gb|ABQ99438.1| hypothetical protein CGSHiGG_01900 [Haemophilus influenzae
PittGG]
gi|301169962|emb|CBW29566.1| integration host factor (IHF), DNA-binding protein, beta subunit
[Haemophilus influenzae 10810]
Length = 94
Score = 97.9 bits (243), Expect = 4e-19, Method: Composition-based stats.
Identities = 40/91 (43%), Positives = 60/91 (65%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS L+ ++ K P L +++E +V +LE ++Q+L NG RVE+RGFGSFS+ R RL
Sbjct: 1 MTKSELMEKLSAKQPTLPAKEIENMVKDILEFISQSLENGDRVEVRGFGSFSLHHRQPRL 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P +++ K VP+F+AGK LK R++
Sbjct: 61 GRNPKTGDSVNLSAKSVPYFKAGKELKARVD 91
>gi|261377756|ref|ZP_05982329.1| integration host factor, beta subunit [Neisseria cinerea ATCC
14685]
gi|269146042|gb|EEZ72460.1| integration host factor, beta subunit [Neisseria cinerea ATCC
14685]
Length = 104
Score = 97.9 bits (243), Expect = 5e-19, Method: Composition-based stats.
Identities = 41/96 (42%), Positives = 58/96 (60%), Gaps = 5/96 (5%)
Query: 1 MIKSSLIGTIAK-----KNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRK 55
M KS L+ +A+ L +DVE V +L++ MT++LA G R+EIRGFGSF +
Sbjct: 1 MTKSELMVRLAEVFAAKNGTHLLAKDVEYSVKVLVDTMTRSLARGQRIEIRGFGSFDLNH 60
Query: 56 RAARLARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R AR+ R P + V EK VP F+ GK L+ER++
Sbjct: 61 RPARIGRNPKTGDRVEVPEKHVPHFKPGKELRERVD 96
>gi|108759809|ref|YP_631785.1| integration host factor subunit alpha [Myxococcus xanthus DK
1622]
gi|14194862|sp|Q9K4Q3|IHFA_MYXXA RecName: Full=Integration host factor subunit alpha;
Short=IHF-alpha
gi|123247723|sp|Q1D6D8|IHFA_MYXXD RecName: Full=Integration host factor subunit alpha;
Short=IHF-alpha
gi|9663772|emb|CAC01236.1| integration host factor alpha subunit [Myxococcus xanthus]
gi|108463689|gb|ABF88874.1| integration host factor, alpha subunit [Myxococcus xanthus DK
1622]
Length = 129
Score = 97.9 bits (243), Expect = 5e-19, Method: Composition-based stats.
Identities = 28/93 (30%), Positives = 51/93 (54%), Gaps = 1/93 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ +I + +K + ++ +IV ++ + + + L G +++I GFG+F VR++ AR+
Sbjct: 1 MTKADIIEGVYEK-VGFSKKESAEIVELVFDTLKETLERGDKIKISGFGNFQVRQKKARV 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSP 93
R P K I + + V FR + LK LN
Sbjct: 60 GRNPQTGKEIEISARRVLTFRPSQVLKSALNGE 92
>gi|229086297|ref|ZP_04218475.1| DNA-binding protein HU [Bacillus cereus Rock3-44]
gi|228696992|gb|EEL49799.1| DNA-binding protein HU [Bacillus cereus Rock3-44]
Length = 90
Score = 97.5 bits (242), Expect = 5e-19, Method: Composition-based stats.
Identities = 32/91 (35%), Positives = 55/91 (60%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI +A + +++ ++ +V +++ +T LA G +V++ GFG+F VR+RAAR
Sbjct: 1 MNKTELIKNVA-QTAEISQKEATVVVQSVVDSITNTLAAGEKVQLIGFGTFEVRERAART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + + + VP F+AGK LKE +
Sbjct: 60 GRNPQTGEEMQIAASKVPAFKAGKELKEAVK 90
>gi|302388378|ref|YP_003824200.1| histone family protein DNA-binding protein [Clostridium
saccharolyticum WM1]
gi|302199006|gb|ADL06577.1| histone family protein DNA-binding protein [Clostridium
saccharolyticum WM1]
Length = 91
Score = 97.5 bits (242), Expect = 5e-19, Method: Composition-based stats.
Identities = 34/92 (36%), Positives = 59/92 (64%), Gaps = 1/92 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI +A+K +L+ +D EK V L + +++ L G ++++ GFG+F V +RAAR
Sbjct: 1 MNKAELIAAVAEK-AELSKKDAEKAVKALTDVISEELVKGEKIQLVGFGTFEVSERAARE 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P + +V+++ P F+AGK LK+ +N+
Sbjct: 60 GRNPKSGEVMNIPASKTPKFKAGKALKDMVNA 91
>gi|283784266|ref|YP_003364131.1| DNA-binding protein HU-beta [Citrobacter rodentium ICC168]
gi|282947720|emb|CBG87275.1| DNA-binding protein HU-beta [Citrobacter rodentium ICC168]
Length = 95
Score = 97.5 bits (242), Expect = 5e-19, Method: Composition-based stats.
Identities = 34/90 (37%), Positives = 52/90 (57%), Gaps = 1/90 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
KS LI IA ++ + ++ ++ +T++L G V + GFG+FSV++RAAR
Sbjct: 7 NKSQLIDKIAA-GADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFSVKERAARTG 65
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P K I++ VP FRAGK LK+ +N
Sbjct: 66 RNPQTGKEITIAAAKVPGFRAGKALKDAVN 95
>gi|90419402|ref|ZP_01227312.1| DNA-binding protein [Aurantimonas manganoxydans SI85-9A1]
gi|90336339|gb|EAS50080.1| DNA-binding protein [Aurantimonas manganoxydans SI85-9A1]
Length = 92
Score = 97.5 bits (242), Expect = 5e-19, Method: Composition-based stats.
Identities = 32/93 (34%), Positives = 51/93 (54%), Gaps = 1/93 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI +++K +L+ QD V+ + E + +A G + + GFG+FSV RAA
Sbjct: 1 MNKNELIAAVSEK-AELSKQDASSAVDAVFETLQATMAKGDDIRLVGFGTFSVSHRAASK 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSP 93
R P + + + VP F AGK LK+ +N+
Sbjct: 60 GRNPSTGAEVDIPARNVPKFAAGKGLKDAVNNK 92
>gi|94987336|ref|YP_595269.1| nucleoid DNA-binding protein [Lawsonia intracellularis
PHE/MN1-00]
gi|94731585|emb|CAJ54948.1| Bacterial nucleoid DNA-binding protein [Lawsonia intracellularis
PHE/MN1-00]
Length = 91
Score = 97.5 bits (242), Expect = 5e-19, Method: Composition-based stats.
Identities = 37/92 (40%), Positives = 58/92 (63%), Gaps = 1/92 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS L+ +++++ ++ + +VN ++ M ++L GGRVE+RGFGSF V++
Sbjct: 1 MNKSELVKSLSEQ-ANISLDEATLVVNTFVDSMKESLLKGGRVEVRGFGSFKVKEYEGYA 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P + + V+ K +PFFRAGK LKE LNS
Sbjct: 60 GRNPRTGEKVVVQPKRLPFFRAGKELKEYLNS 91
>gi|325922711|ref|ZP_08184451.1| bacterial nucleoid DNA-binding protein [Xanthomonas gardneri ATCC
19865]
gi|325546828|gb|EGD17942.1| bacterial nucleoid DNA-binding protein [Xanthomonas gardneri ATCC
19865]
Length = 90
Score = 97.5 bits (242), Expect = 5e-19, Method: Composition-based stats.
Identities = 32/91 (35%), Positives = 50/91 (54%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI +A ++ + + V+ ++ E+T+AL G V + GFG+F VR+RA R
Sbjct: 1 MNKTELIDGVAAA-ADISKAEAGRAVDAVVSEITKALKKGEAVTLVGFGTFQVRERAERT 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P I + P F+AGK LK+ +N
Sbjct: 60 GRNPKTGDSIKIAASKNPAFKAGKALKDAVN 90
>gi|302388697|ref|YP_003824518.1| bacterial nucleoid protein Hbs [Thermosediminibacter oceani DSM
16646]
gi|302199325|gb|ADL06895.1| bacterial nucleoid protein Hbs [Thermosediminibacter oceani DSM
16646]
Length = 91
Score = 97.5 bits (242), Expect = 5e-19, Method: Composition-based stats.
Identities = 33/92 (35%), Positives = 57/92 (61%), Gaps = 1/92 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ L+ +A+K+ L +D EK +N +E +++AL+ +V++ GFG+F VR+R+ R
Sbjct: 1 MNKAELVSVMAEKS-GLTKKDSEKALNAFIEAVSEALSKRDKVQLVGFGTFEVRERSQRK 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P + I + +P F+AGK LK+ +N
Sbjct: 60 GRNPQTGEEIDIPAASIPAFKAGKALKDSINK 91
>gi|295704900|ref|YP_003597975.1| DNA-binding protein HU [Bacillus megaterium DSM 319]
gi|294802559|gb|ADF39625.1| DNA-binding protein HU [Bacillus megaterium DSM 319]
Length = 90
Score = 97.5 bits (242), Expect = 5e-19, Method: Composition-based stats.
Identities = 37/91 (40%), Positives = 56/91 (61%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI +A K+ +L QD +K V+ L E ++ LAN ++++ GFG+F VR+RAAR
Sbjct: 1 MKKAELIDAVATKS-ELTKQDTKKAVDALFETISNTLANEEKIQLIGFGTFEVRERAART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + +++ VP F+ GK LKE L
Sbjct: 60 GRNPQTGEEMTIPASKVPAFKPGKELKEALK 90
>gi|254506390|ref|ZP_05118532.1| DNA-binding protein HU-alpha [Vibrio parahaemolyticus 16]
gi|219550564|gb|EED27547.1| DNA-binding protein HU-alpha [Vibrio parahaemolyticus 16]
Length = 90
Score = 97.5 bits (242), Expect = 5e-19, Method: Composition-based stats.
Identities = 33/91 (36%), Positives = 49/91 (53%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI IA+K L+ + + L+ +T AL G +V++ GFG+F V RAAR
Sbjct: 1 MNKTQLIDFIAEK-ADLSKAQAKAALEATLDGVTDALKEGDQVQLIGFGTFKVNHRAART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + I + VP F +GK LK+ +
Sbjct: 60 GRNPKTGEEIQIAAANVPAFVSGKALKDAVK 90
>gi|228994303|ref|ZP_04154194.1| DNA-binding protein HU [Bacillus pseudomycoides DSM 12442]
gi|228765453|gb|EEM14116.1| DNA-binding protein HU [Bacillus pseudomycoides DSM 12442]
Length = 93
Score = 97.5 bits (242), Expect = 5e-19, Method: Composition-based stats.
Identities = 32/91 (35%), Positives = 52/91 (57%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI ++A + ++ ++ V + + + AL G +V++ GFG+F VR+RAAR
Sbjct: 4 MNKTELIKSVA-QTADISQKEASAAVQSVFDTIANALQTGDKVQLIGFGTFEVRERAART 62
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + I + VP F+AGK LKE +
Sbjct: 63 GRNPQTGEEIQIAAGKVPAFKAGKELKEAVK 93
>gi|192359929|ref|YP_001980677.1| DNA-binding protein HU [Cellvibrio japonicus Ueda107]
gi|190686094|gb|ACE83772.1| DNA-binding protein HU [Cellvibrio japonicus Ueda107]
Length = 91
Score = 97.5 bits (242), Expect = 5e-19, Method: Composition-based stats.
Identities = 32/92 (34%), Positives = 51/92 (55%), Gaps = 1/92 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ ++ +A +L+ + +V+ +E++T ALA G V + GFGSF V +RAAR
Sbjct: 1 MNKTDIVVAVAN-TVELSAHKADLVVSAFVEQITNALARGESVALLGFGSFQVSERAART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P + I + F+AGK LK+ +N
Sbjct: 60 GRNPQTGEAIQIAASKSVSFKAGKALKDAVNE 91
>gi|260583468|ref|ZP_05851216.1| DNA-binding protein HU [Granulicatella elegans ATCC 700633]
gi|260158094|gb|EEW93162.1| DNA-binding protein HU [Granulicatella elegans ATCC 700633]
Length = 92
Score = 97.5 bits (242), Expect = 5e-19, Method: Composition-based stats.
Identities = 37/91 (40%), Positives = 57/91 (62%), Gaps = 1/91 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ L+ +AKK +L +DV V+ L E + +AL G +V++ GFG+F VR+RAAR
Sbjct: 3 NKAELVDRVAKKT-QLTKKDVSAAVDALFETIQEALQAGEKVQVIGFGNFEVRERAARKG 61
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P + + I +E VP F+AGK LK+ + +
Sbjct: 62 RNPQSGEEIQIEASKVPAFKAGKALKDAVKN 92
>gi|229025157|ref|ZP_04181581.1| DNA-binding protein HU [Bacillus cereus AH1272]
gi|228736090|gb|EEL86661.1| DNA-binding protein HU [Bacillus cereus AH1272]
Length = 90
Score = 97.5 bits (242), Expect = 5e-19, Method: Composition-based stats.
Identities = 35/91 (38%), Positives = 57/91 (62%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI +A +N +++ ++ +V ++E +T ALA G +V++ GFG+F VR+RAAR
Sbjct: 1 MNKTELIKNVA-QNAEISQKEATVVVQTVVESITNALAAGEKVQLIGFGTFEVRERAART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + + + VP F+AGK LKE +
Sbjct: 60 GRNPQTGEEMQIAASKVPAFKAGKELKEAVK 90
>gi|110598177|ref|ZP_01386454.1| Histone-like bacterial DNA-binding protein [Chlorobium
ferrooxidans DSM 13031]
gi|110340191|gb|EAT58689.1| Histone-like bacterial DNA-binding protein [Chlorobium
ferrooxidans DSM 13031]
Length = 91
Score = 97.5 bits (242), Expect = 5e-19, Method: Composition-based stats.
Identities = 33/90 (36%), Positives = 49/90 (54%), Gaps = 1/90 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI IA + KL D ++ + + + +L NG V + GFG+F+ RAAR
Sbjct: 1 MSKAELIEKIAAQ-AKLTKADADRALTAFIGIVKASLKNGNDVPLAGFGTFATVDRAARQ 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P K I++ K V FR GK+LK+ +
Sbjct: 60 GRNPQTGKTITIAAKKVVKFRPGKSLKDEV 89
>gi|134290950|ref|YP_001114719.1| histone family protein DNA-binding protein [Burkholderia
vietnamiensis G4]
gi|134134139|gb|ABO58464.1| histone family protein DNA-binding protein [Burkholderia
vietnamiensis G4]
Length = 92
Score = 97.5 bits (242), Expect = 5e-19, Method: Composition-based stats.
Identities = 29/91 (31%), Positives = 47/91 (51%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K LI +A ++ D K V +L+ +T A++ V++ GFG+FS +R+AR
Sbjct: 1 MNKQELIDAVAA-GAGVSKSDASKTVQAVLDAITDAVSRDEAVQLIGFGAFSRGQRSART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + I++ F AGK K+ +N
Sbjct: 60 GRNPTTGEEIAIAAANTVKFAAGKAFKDAVN 90
>gi|262273289|ref|ZP_06051104.1| DNA-binding protein HU-alpha [Grimontia hollisae CIP 101886]
gi|262222662|gb|EEY73972.1| DNA-binding protein HU-alpha [Grimontia hollisae CIP 101886]
Length = 90
Score = 97.5 bits (242), Expect = 5e-19, Method: Composition-based stats.
Identities = 33/91 (36%), Positives = 49/91 (53%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K++LI IA+K L+ + + L + AL +G +V++ GFG+F V RAAR
Sbjct: 1 MNKTNLIDLIAEK-ADLSKAQAKAALEATLAGIEGALKDGDQVQLIGFGTFKVNHRAART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + I + VP F AGK LK+ +
Sbjct: 60 GRNPQTGQEIQIAAANVPAFVAGKALKDAVK 90
>gi|291542886|emb|CBL15996.1| bacterial nucleoid protein Hbs [Ruminococcus bromii L2-63]
Length = 91
Score = 97.5 bits (242), Expect = 5e-19, Method: Composition-based stats.
Identities = 32/92 (34%), Positives = 53/92 (57%), Gaps = 1/92 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI +A+++ L+ +D EK V+ ++ + +A G +++I GFG+F R+R AR
Sbjct: 1 MNKTELIAAVAEQS-GLSKKDAEKAVSSTIDTIINTVAEGEKIQIAGFGTFEQRQRNART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
P K I + VP F+AGK K+ +N
Sbjct: 60 GCDPRTGKSIEIPASKVPAFKAGKGFKDVVNK 91
>gi|163750455|ref|ZP_02157694.1| DNA-binding protein, HU family [Shewanella benthica KT99]
gi|161329776|gb|EDQ00764.1| DNA-binding protein, HU family [Shewanella benthica KT99]
Length = 91
Score = 97.5 bits (242), Expect = 5e-19, Method: Composition-based stats.
Identities = 34/92 (36%), Positives = 50/92 (54%), Gaps = 1/92 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ L+ +A+ N L + + + E +T AL +G ++ I GFGSF RAAR+
Sbjct: 1 MNKTELVAKMAE-NADLTKTEAARALKSFEETITAALKSGDKISIIGFGSFETTNRAARI 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P K I + VP F+AGK LK+ +N
Sbjct: 60 GRNPQTGKEIQIPAATVPKFKAGKTLKDSVNQ 91
>gi|288958412|ref|YP_003448753.1| DNA-binding protein HU-beta [Azospirillum sp. B510]
gi|288910720|dbj|BAI72209.1| DNA-binding protein HU-beta [Azospirillum sp. B510]
Length = 91
Score = 97.5 bits (242), Expect = 5e-19, Method: Composition-based stats.
Identities = 31/91 (34%), Positives = 49/91 (53%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M ++ LI T+A N + D K+V + E ++ AL G V + GFG F V +RAAR
Sbjct: 1 MNQAELIETVAT-NAGIKKADAAKVVQAVFEGISGALGRGEDVRLAGFGIFEVAERAARE 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P +V+++ P F+ K L++ +N
Sbjct: 60 GRNPRTGEVVAIAASKAPKFKPAKQLRDLVN 90
>gi|48696914|ref|YP_024677.1| gp04 [Burkholderia phage BcepMu]
gi|197295397|ref|YP_002153938.1| HU DNA-binding protein [Burkholderia cenocepacia J2315]
gi|44829477|gb|AAS47844.1| gp04 [Burkholderia phage BcepMu]
gi|195944876|emb|CAR57482.1| HU DNA-binding protein [Burkholderia cenocepacia J2315]
Length = 90
Score = 97.5 bits (242), Expect = 5e-19, Method: Composition-based stats.
Identities = 33/91 (36%), Positives = 47/91 (51%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI +A + + D + +LE +T++L G V + GFG FSV RAAR
Sbjct: 1 MNKSDLINHVAAET-GMTKTDSGFALEAVLEGITKSLRKGDTVTLTGFGVFSVGARAART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + I + P F+AGK LK+ +
Sbjct: 60 GRNPATGEEIKIPASKAPKFKAGKGLKDAVK 90
>gi|226312045|ref|YP_002771939.1| DNA-binding protein HU [Brevibacillus brevis NBRC 100599]
gi|226094993|dbj|BAH43435.1| DNA-binding protein HU [Brevibacillus brevis NBRC 100599]
Length = 90
Score = 97.5 bits (242), Expect = 5e-19, Method: Composition-based stats.
Identities = 34/91 (37%), Positives = 53/91 (58%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI +A+ +L +D K V+ +L+ + AL G +V++ GFG+F VR+RAAR
Sbjct: 1 MNKTELIAKVAE-TTELTKKDATKAVDAVLDAIADALKTGDKVQLIGFGNFEVRERAARK 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + I + VP F+ GK LK+ +
Sbjct: 60 GRNPQTGEEIEIASSKVPAFKPGKQLKDSIK 90
>gi|1094409|prf||2106156A DNA-binding protein HU
Length = 90
Score = 97.5 bits (242), Expect = 5e-19, Method: Composition-based stats.
Identities = 32/92 (34%), Positives = 53/92 (57%), Gaps = 3/92 (3%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI +A+ L+ +D K V+ + + +T+AL G +V++ GFG+F R+RAAR
Sbjct: 1 MNKTELINAVAE-TSGLSKKDATKAVDAVFDSITEALRKGDKVQLIGFGNFE-RERAARK 58
Query: 61 AR-APLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + + + VP F+ GK LK+ +
Sbjct: 59 GRVNPQTGEEMEIPASKVPAFKPGKALKDAVK 90
>gi|209521455|ref|ZP_03270163.1| histone family protein DNA-binding protein [Burkholderia sp.
H160]
gi|295676520|ref|YP_003605044.1| histone family protein DNA-binding protein [Burkholderia sp.
CCGE1002]
gi|209498111|gb|EDZ98258.1| histone family protein DNA-binding protein [Burkholderia sp.
H160]
gi|295436363|gb|ADG15533.1| histone family protein DNA-binding protein [Burkholderia sp.
CCGE1002]
Length = 90
Score = 97.5 bits (242), Expect = 5e-19, Method: Composition-based stats.
Identities = 32/91 (35%), Positives = 49/91 (53%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI IA++ ++ + ++ ++ + L GG V + GFG+F+V KR AR
Sbjct: 1 MNKTELIDHIAQQ-ADISKAAAGRALDAVIAGVKSTLKKGGSVTLVGFGTFAVGKRTART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P I ++ VP FR GK LK+ LN
Sbjct: 60 GRNPRTGAAIKIKAAKVPKFRPGKALKDALN 90
>gi|163814658|ref|ZP_02206047.1| hypothetical protein COPEUT_00809 [Coprococcus eutactus ATCC
27759]
gi|158450293|gb|EDP27288.1| hypothetical protein COPEUT_00809 [Coprococcus eutactus ATCC
27759]
Length = 90
Score = 97.5 bits (242), Expect = 5e-19, Method: Composition-based stats.
Identities = 30/91 (32%), Positives = 51/91 (56%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ L+ IA+K KL+ +D E + + + L G ++++ GFG+F V +R AR
Sbjct: 1 MNKTELVAAIAEKT-KLSKKDAEAALKAFTDVVADELKKGEKIQLVGFGTFEVSERPARE 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + +++ P F+AGK LK+ +N
Sbjct: 60 GRNPRTGETMTIAASKAPKFKAGKALKDSIN 90
>gi|156972573|ref|YP_001443480.1| DNA-binding protein [Vibrio harveyi ATCC BAA-1116]
gi|156524167|gb|ABU69253.1| hypothetical protein VIBHAR_00213 [Vibrio harveyi ATCC BAA-1116]
Length = 101
Score = 97.5 bits (242), Expect = 6e-19, Method: Composition-based stats.
Identities = 37/91 (40%), Positives = 49/91 (53%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI IA+K L+ + + LE +T AL G +V++ GFG+F V RAAR
Sbjct: 12 MNKTQLIDFIAEK-ADLSKAQAKAALEATLEGVTGALKEGDQVQLIGFGTFKVNHRAART 70
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P I + VP F AGK LKE +N
Sbjct: 71 GRNPKTGDEIQIAAANVPAFVAGKALKESVN 101
>gi|148975855|ref|ZP_01812644.1| DNA-binding protein HU-beta [Vibrionales bacterium SWAT-3]
gi|145964600|gb|EDK29853.1| DNA-binding protein HU-beta [Vibrionales bacterium SWAT-3]
Length = 91
Score = 97.5 bits (242), Expect = 6e-19, Method: Composition-based stats.
Identities = 37/91 (40%), Positives = 49/91 (53%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS L+ IA + ++ + +N L+E ++ LANG V I GFGSF V RAAR
Sbjct: 1 MNKSQLVEHIAT-SADISKEQAGNALNALVEGISTTLANGDEVAILGFGSFKVNTRAART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + I + P F+AGK LKE N
Sbjct: 60 GRNPRTGEEIQIAASKTPAFKAGKALKEACN 90
>gi|304569686|ref|YP_009985.2| DNA-binding protein HU [Desulfovibrio vulgaris str. Hildenborough]
Length = 101
Score = 97.5 bits (242), Expect = 6e-19, Method: Composition-based stats.
Identities = 29/91 (31%), Positives = 40/91 (43%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ L+ I K E ++ + + A+A G V GFGSF V RAAR
Sbjct: 11 MTKAELVEKIHAKAGLATKAQAESALDATIAVLADAMAAGESVTFTGFGSFKVADRAARK 70
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + I + V F GK LK+ +
Sbjct: 71 GRNPRTGEEIVIPAGKVVKFTPGKLLKDAVK 101
>gi|118260|sp|P28080|DBHA_VIBPR RecName: Full=DNA-binding protein HU-alpha
gi|141878|gb|AAA21939.1| histone-like protein [Vibrio proteolyticus]
Length = 90
Score = 97.5 bits (242), Expect = 6e-19, Method: Composition-based stats.
Identities = 34/91 (37%), Positives = 48/91 (52%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI IA+K L+ + + L+ +T AL G +V++ GFG+F V RAAR
Sbjct: 1 MNKTQLIDFIAEK-ADLSKAQAKAALEATLDGVTDALKEGDQVQLIGFGTFKVNHRAART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P I + VP F AGK LK+ +
Sbjct: 60 GRNPKTGAEIQIAAANVPAFVAGKALKDAVK 90
>gi|295109533|emb|CBL23486.1| Bacterial nucleoid DNA-binding protein [Ruminococcus obeum
A2-162]
Length = 91
Score = 97.5 bits (242), Expect = 6e-19, Method: Composition-based stats.
Identities = 31/92 (33%), Positives = 55/92 (59%), Gaps = 1/92 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ L+ +AK+ L+ +DVE ++ + + L GG++++ GFG+F V +RAAR
Sbjct: 1 MNKTELVAAMAKET-NLSKKDVEAVLKSFTDVVADELKKGGKIQLVGFGTFEVSERAARE 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P + +++ P F+AGK LK+ +N+
Sbjct: 60 GRNPQTGETMTIAASKAPKFKAGKALKDMVNA 91
>gi|84393074|ref|ZP_00991840.1| Bacterial nucleoid DNA-binding protein [Vibrio splendidus 12B01]
gi|86147879|ref|ZP_01066184.1| Bacterial nucleoid DNA-binding protein [Vibrio sp. MED222]
gi|148981204|ref|ZP_01816330.1| bacterial nucleoid DNA-binding protein [Vibrionales bacterium
SWAT-3]
gi|84376326|gb|EAP93208.1| Bacterial nucleoid DNA-binding protein [Vibrio splendidus 12B01]
gi|85834306|gb|EAQ52459.1| Bacterial nucleoid DNA-binding protein [Vibrio sp. MED222]
gi|145960960|gb|EDK26286.1| bacterial nucleoid DNA-binding protein [Vibrionales bacterium
SWAT-3]
Length = 90
Score = 97.5 bits (242), Expect = 6e-19, Method: Composition-based stats.
Identities = 34/91 (37%), Positives = 48/91 (52%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI IA+K L+ + + L +T AL +G +V++ GFG+F V RAAR
Sbjct: 1 MNKTQLIDFIAEK-ADLSKAQAKAALEATLGGVTDALKDGDQVQLIGFGTFKVNHRAART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P I + VP F AGK LK+ +
Sbjct: 60 GRNPKTGDEIQIAAANVPAFVAGKALKDSVK 90
>gi|118579611|ref|YP_900861.1| histone family protein DNA-binding protein [Pelobacter
propionicus DSM 2379]
gi|118502321|gb|ABK98803.1| bacterial nucleoid protein Hbs [Pelobacter propionicus DSM 2379]
Length = 92
Score = 97.5 bits (242), Expect = 6e-19, Method: Composition-based stats.
Identities = 33/93 (35%), Positives = 54/93 (58%), Gaps = 1/93 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI +A+++ L D EK ++ + +T+AL G ++ + GFG+F KRAAR
Sbjct: 1 MTKAELISAVAEES-GLKKVDAEKALSAFISTVTEALKQGDKLSLVGFGTFCTSKRAARK 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSP 93
+ P K I++ +P FR GK LK+ +N+
Sbjct: 60 GQNPQTGKKINIPAATIPKFRPGKTLKDAVNAK 92
>gi|46201963|ref|ZP_00054041.2| COG0776: Bacterial nucleoid DNA-binding protein [Magnetospirillum
magnetotacticum MS-1]
Length = 91
Score = 97.5 bits (242), Expect = 6e-19, Method: Composition-based stats.
Identities = 31/91 (34%), Positives = 46/91 (50%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K L+ +A+ L+ + +++ +T AL G V + GFGSFSV +RAA+
Sbjct: 1 MNKQDLVNKVAE-LSGLSKAAADNVIDATFAAITSALKAGDDVRLVGFGSFSVTQRAAKE 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P I + P F AGK LK+ +N
Sbjct: 60 GRNPRTGATIKIAASKAPKFTAGKGLKDAVN 90
>gi|262276275|ref|ZP_06054084.1| DNA-binding protein HU-beta [Grimontia hollisae CIP 101886]
gi|262220083|gb|EEY71399.1| DNA-binding protein HU-beta [Grimontia hollisae CIP 101886]
Length = 93
Score = 97.5 bits (242), Expect = 6e-19, Method: Composition-based stats.
Identities = 35/90 (38%), Positives = 53/90 (58%), Gaps = 1/90 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
KS LI IA+ N L+ + ++ L+E ++ +L G +V + GFG+FSVR+R+AR
Sbjct: 5 NKSQLIDKIAE-NADLSKAAAGRALDALIEAVSDSLKEGEQVALVGFGTFSVRERSARTG 63
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P I + VP F+AGK LK+ +N
Sbjct: 64 RNPQTGAEIKIAAAKVPGFKAGKALKDAVN 93
>gi|228997443|ref|ZP_04157062.1| DNA-binding protein HU [Bacillus mycoides Rock3-17]
gi|229005088|ref|ZP_04162812.1| DNA-binding protein HU [Bacillus mycoides Rock1-4]
gi|228756190|gb|EEM05511.1| DNA-binding protein HU [Bacillus mycoides Rock1-4]
gi|228762319|gb|EEM11246.1| DNA-binding protein HU [Bacillus mycoides Rock3-17]
Length = 93
Score = 97.5 bits (242), Expect = 6e-19, Method: Composition-based stats.
Identities = 32/91 (35%), Positives = 51/91 (56%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI +A + ++ ++ V + + + AL G +V++ GFG+F VR+RAAR
Sbjct: 4 MNKTELIKNVA-QTADISQKEASAAVQSVFDTIANALQTGDKVQLIGFGTFEVRERAART 62
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + I + VP F+AGK LKE +
Sbjct: 63 GRNPQTGEEIQIAAGKVPAFKAGKELKEAVK 93
>gi|194595686|gb|ACF77129.1| bacterial nucleoid DNA-binding protein [Azospirillum brasilense]
Length = 90
Score = 97.1 bits (241), Expect = 6e-19, Method: Composition-based stats.
Identities = 30/91 (32%), Positives = 48/91 (52%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ L+ +A L+ D K V+ + + + +L NG V + GFG+F+V +RAA
Sbjct: 1 MNKNDLVAHVADA-VGLSKTDATKAVDAIFDGIADSLKNGEEVRLVGFGTFAVSERAASE 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + I++ P F+ GK LK+ L
Sbjct: 60 GRNPRTGEKIAIPASKQPKFKPGKTLKDGLK 90
>gi|183597477|ref|ZP_02958970.1| hypothetical protein PROSTU_00752 [Providencia stuartii ATCC
25827]
gi|188023227|gb|EDU61267.1| hypothetical protein PROSTU_00752 [Providencia stuartii ATCC
25827]
Length = 90
Score = 97.1 bits (241), Expect = 6e-19, Method: Composition-based stats.
Identities = 30/91 (32%), Positives = 48/91 (52%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ L+ IA+ + L + + L +++ L G +V++ GFG+F V RA R
Sbjct: 1 MNKTELVDAIAE-SADLTKVQAKAALESTLNAISETLKKGEQVQLVGFGTFKVSHRAERT 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P ++ I++ VP F AGK LKE +
Sbjct: 60 GRNPQTREEITIPATNVPAFSAGKALKEAVK 90
>gi|332969967|gb|EGK08967.1| DNA-binding protein HU-beta [Kingella kingae ATCC 23330]
Length = 122
Score = 97.1 bits (241), Expect = 6e-19, Method: Composition-based stats.
Identities = 31/90 (34%), Positives = 44/90 (48%), Gaps = 1/90 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI IA ++ L D K ++ E + L G + + GFG+F V RA R
Sbjct: 23 MNKSELIDAIATES-GLTKTDASKALDAFTEVVKNTLKTGDSITLVGFGTFKVADRAERQ 81
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
P ++ I++ VP F GK LK+ L
Sbjct: 82 GLNPKTKEAITIPAARVPKFTPGKALKDVL 111
>gi|172057810|ref|YP_001814270.1| histone family protein DNA-binding protein [Exiguobacterium
sibiricum 255-15]
gi|171990331|gb|ACB61253.1| histone family protein DNA-binding protein [Exiguobacterium
sibiricum 255-15]
Length = 90
Score = 97.1 bits (241), Expect = 6e-19, Method: Composition-based stats.
Identities = 35/91 (38%), Positives = 55/91 (60%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI + +K+ L +DV K+V E +T+ L +G +V++ GFG+F VR+RAAR
Sbjct: 1 MNKTELIQAVVEKS-GLTKKDVTKVVESTFESITETLQSGEKVQLIGFGNFEVRERAARK 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P ++ I + VP F+ GK LK+ +
Sbjct: 60 GRNPRTKEDIEIPASKVPAFKPGKALKDAVK 90
>gi|311233014|gb|ADP85868.1| histone family protein DNA-binding protein [Desulfovibrio vulgaris
RCH1]
Length = 132
Score = 97.1 bits (241), Expect = 6e-19, Method: Composition-based stats.
Identities = 29/91 (31%), Positives = 40/91 (43%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ L+ I K E ++ + + A+A G V GFGSF V RAAR
Sbjct: 42 MTKAELVEKIHAKAGLATKAQAESALDATIAVLADAMAAGESVTFTGFGSFKVADRAARK 101
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + I + V F GK LK+ +
Sbjct: 102 GRNPRTGEEIVIPAGKVVKFTPGKLLKDAVK 132
>gi|15672484|ref|NP_266658.1| HU like DNA-binding protein [Lactococcus lactis subsp. lactis
Il1403]
gi|116511328|ref|YP_808544.1| nucleoid protein Hbs [Lactococcus lactis subsp. cremoris SK11]
gi|125623363|ref|YP_001031846.1| HU-like DNA-binding protein [Lactococcus lactis subsp. cremoris
MG1363]
gi|281490996|ref|YP_003352976.1| DNA-binding protein HU [Lactococcus lactis subsp. lactis KF147]
gi|14194595|sp|Q9CI64|DBH_LACLA RecName: Full=DNA-binding protein HU
gi|12723384|gb|AAK04600.1|AE006285_8 HU like DNA-binding protein [Lactococcus lactis subsp. lactis
Il1403]
gi|12830838|gb|AAK08212.1|AF320913_2 HllA [Lactococcus lactis]
gi|12830846|gb|AAK08218.1|AF320915_2 HllA [Lactococcus lactis subsp. cremoris MG1363]
gi|12830851|gb|AAK08222.1|AF320916_3 HllA [Lactococcus lactis]
gi|116106982|gb|ABJ72122.1| bacterial nucleoid protein Hbs [Lactococcus lactis subsp.
cremoris SK11]
gi|124492171|emb|CAL97100.1| HU-like DNA-binding protein [Lactococcus lactis subsp. cremoris
MG1363]
gi|281374754|gb|ADA64274.1| DNA-binding protein HU, histone-like protein [Lactococcus lactis
subsp. lactis KF147]
gi|300070111|gb|ADJ59511.1| DNA-binding protein HU, histone-like protein [Lactococcus lactis
subsp. cremoris NZ9000]
gi|326406030|gb|ADZ63101.1| DNA-binding protein HU-beta [Lactococcus lactis subsp. lactis
CV56]
Length = 91
Score = 97.1 bits (241), Expect = 6e-19, Method: Composition-based stats.
Identities = 37/90 (41%), Positives = 52/90 (57%), Gaps = 1/90 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K LI +A K L +D EK VN E +T+ LA G +V++ GFG+F R+RAAR
Sbjct: 3 NKQDLIAEVAAKT-GLTKKDSEKAVNAFGEVVTEFLAKGEKVQLIGFGTFETRERAAREG 61
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + I + +VP F+AGK LK+ +
Sbjct: 62 RNPQTGEAIKIAATVVPAFKAGKALKDAVK 91
>gi|187934552|ref|YP_001884411.1| DNA-binding protein HU [Clostridium botulinum B str. Eklund 17B]
gi|188590511|ref|YP_001919603.1| DNA-binding protein HU [Clostridium botulinum E3 str. Alaska E43]
gi|251781035|ref|ZP_04823955.1| DNA-binding protein HU [Clostridium botulinum E1 str. 'BoNT E
Beluga']
gi|187722705|gb|ACD23926.1| DNA-binding protein HU [Clostridium botulinum B str. Eklund 17B]
gi|188500792|gb|ACD53928.1| DNA-binding protein HU [Clostridium botulinum E3 str. Alaska E43]
gi|243085350|gb|EES51240.1| DNA-binding protein HU [Clostridium botulinum E1 str. 'BoNT E
Beluga']
Length = 92
Score = 97.1 bits (241), Expect = 6e-19, Method: Composition-based stats.
Identities = 35/93 (37%), Positives = 60/93 (64%), Gaps = 1/93 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI ++A+K+ KL +D E + +E + +AL +G +V++ GFG+F R+RAAR
Sbjct: 1 MNKAELITSMAEKS-KLTKKDAELALKSFIESVEEALESGEKVQLVGFGTFETRERAARE 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSP 93
R P ++VI++ VP F+ GK K+++N+
Sbjct: 60 GRNPRTKEVINIPATTVPVFKPGKEFKDKVNNK 92
>gi|33861877|ref|NP_893438.1| histone-like DNA-binding protein [Prochlorococcus marinus subsp.
pastoris str. CCMP1986]
gi|78779803|ref|YP_397915.1| histone-like DNA-binding protein [Prochlorococcus marinus str.
MIT 9312]
gi|123966715|ref|YP_001011796.1| histone-like DNA-binding protein [Prochlorococcus marinus str.
MIT 9515]
gi|33640245|emb|CAE19780.1| Bacterial histone-like DNA-binding protein [Prochlorococcus
marinus subsp. pastoris str. CCMP1986]
gi|78713302|gb|ABB50479.1| bacterial nucleoid protein Hbs [Prochlorococcus marinus str. MIT
9312]
gi|123201081|gb|ABM72689.1| Bacterial histone-like DNA-binding protein [Prochlorococcus
marinus str. MIT 9515]
Length = 91
Score = 97.1 bits (241), Expect = 6e-19, Method: Composition-based stats.
Identities = 32/90 (35%), Positives = 50/90 (55%), Gaps = 1/90 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ L+ +A + +L DV +V+ +E + ++ G +V I GFGSF R R+AR
Sbjct: 1 MNKADLVNLVAART-ELTKTDVSLVVDAAIETIVDSVVEGKKVSILGFGSFEPRDRSARQ 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
P + I++ K VP F AGK K+R+
Sbjct: 60 GLNPKTGEKIAIPAKRVPTFSAGKLFKDRV 89
>gi|257464686|ref|ZP_05629057.1| integration host factor subunit beta [Actinobacillus minor 202]
gi|257450346|gb|EEV24389.1| integration host factor subunit beta [Actinobacillus minor 202]
Length = 93
Score = 97.1 bits (241), Expect = 6e-19, Method: Composition-based stats.
Identities = 43/91 (47%), Positives = 59/91 (64%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI + +NP L+ VE V +LE++ +L NG R+EIRGFGSFS+ R AR+
Sbjct: 1 MTKSELIDNLFSQNPSLHLSMVEDGVREILEKIMFSLENGERIEIRGFGSFSLHHRDARV 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + + +E K VP F+AGK LKER++
Sbjct: 61 GRNPKTGESVKLEAKSVPHFKAGKELKERVD 91
>gi|253996481|ref|YP_003048545.1| histone family protein DNA-binding protein [Methylotenera mobilis
JLW8]
gi|253983160|gb|ACT48018.1| histone family protein DNA-binding protein [Methylotenera mobilis
JLW8]
Length = 90
Score = 97.1 bits (241), Expect = 6e-19, Method: Composition-based stats.
Identities = 30/91 (32%), Positives = 51/91 (56%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS L+ +A + + D ++++ ++ + +AL G V + GFG+F V K+AAR
Sbjct: 1 MNKSELVAKVAAE-AGVTQADTNRVLDAIINTVGEALKAGDNVALVGFGTFQVTKKAARS 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P I + + P F+AGK LK+++N
Sbjct: 60 GRNPSTGATIQIAARNAPVFKAGKTLKDKVN 90
>gi|163856951|ref|YP_001631249.1| integration host factor subunit alpha [Bordetella petrii DSM 12804]
gi|163260679|emb|CAP42981.1| integration host factor alpha-subunit [Bordetella petrii]
Length = 107
Score = 97.1 bits (241), Expect = 6e-19, Method: Composition-based stats.
Identities = 30/98 (30%), Positives = 50/98 (51%), Gaps = 1/98 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ L + ++ LN ++ + IV+ EE+ ALA G V++ GFG+F VR + R
Sbjct: 9 TKAELAELLFER-VGLNKREAKDIVDTFFEEIRDALARGDSVKLSGFGNFQVRNKPPRPG 67
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDSTLSN 99
R P + I + + V F A + LK + DS ++
Sbjct: 68 RNPKTGETIPIAARRVVTFHASQKLKSVVEQADSANNS 105
>gi|83814878|ref|YP_445501.1| DNA-binding protein HU [Salinibacter ruber DSM 13855]
gi|83756272|gb|ABC44385.1| DNA-binding protein HU [Salinibacter ruber DSM 13855]
Length = 100
Score = 97.1 bits (241), Expect = 6e-19, Method: Composition-based stats.
Identities = 28/99 (28%), Positives = 45/99 (45%), Gaps = 1/99 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI IA L + +V + + A+ G R+E+R FG F V+ RA R
Sbjct: 3 MTKADLIDQIAD-GTGLTKIETRAVVEGFMTAVRGAMKEGRRIELREFGVFEVQHRAPRT 61
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDSTLSN 99
R P + + +E++ P FR L E +++
Sbjct: 62 GRNPQTNEPVEIEDRYKPVFRPSDKLSEAVDAAHKADEE 100
>gi|215778378|ref|YP_002261518.1| DNA-binding protein HU-alpha [Aliivibrio salmonicida LFI1238]
gi|208011423|emb|CAQ81887.1| DNA-binding protein HU-alpha [Aliivibrio salmonicida LFI1238]
Length = 91
Score = 97.1 bits (241), Expect = 7e-19, Method: Composition-based stats.
Identities = 36/92 (39%), Positives = 48/92 (52%), Gaps = 1/92 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K L+ IA L+ Q+ +N +E +T AL NG V + GFG+F V RAAR
Sbjct: 1 MNKKDLVSHIAD-IADLSQQEATAALNATVESITNALKNGEEVTLIGFGTFKVNPRAARE 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P I + +P F+AGK LKE +N
Sbjct: 60 GRNPKTGDTIQIAASNMPAFKAGKALKEAVNE 91
>gi|307729641|ref|YP_003906865.1| histone family protein DNA-binding protein [Burkholderia sp.
CCGE1003]
gi|307584176|gb|ADN57574.1| histone family protein DNA-binding protein [Burkholderia sp.
CCGE1003]
Length = 90
Score = 97.1 bits (241), Expect = 7e-19, Method: Composition-based stats.
Identities = 32/91 (35%), Positives = 49/91 (53%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI IA++ +++ + + ++ + L GG V + GFG+F+V KR AR
Sbjct: 1 MNKTELIDHIAQQ-AEISKAAAGRALEAVIGGVKGTLKKGGSVTLVGFGTFAVGKRTART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P I ++ VP FR GK LK+ LN
Sbjct: 60 GRNPRTGDAIKIKAAKVPKFRPGKALKDALN 90
>gi|310642570|ref|YP_003947328.1| DNA-binding protein hu-alpha (histone-like protein)
[Paenibacillus polymyxa SC2]
gi|309247520|gb|ADO57087.1| DNA-binding protein HU-alpha (Histone-like protein)
[Paenibacillus polymyxa SC2]
Length = 91
Score = 97.1 bits (241), Expect = 7e-19, Method: Composition-based stats.
Identities = 31/90 (34%), Positives = 54/90 (60%), Gaps = 1/90 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ LI +++ +L+ +DV K ++ + E + AL NG +V++ GFG+F VR+R+AR
Sbjct: 3 NKTDLINQVSEST-ELSKKDVTKAIDAVFEAIAGALQNGDKVQLVGFGNFEVRERSARKG 61
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + I + +P F+ GK LK+ +
Sbjct: 62 RNPQTGEEIEIPASKIPAFKPGKALKDGIK 91
>gi|308049131|ref|YP_003912697.1| histone family protein DNA-binding protein [Ferrimonas balearica
DSM 9799]
gi|307631321|gb|ADN75623.1| histone family protein DNA-binding protein [Ferrimonas balearica
DSM 9799]
Length = 93
Score = 97.1 bits (241), Expect = 7e-19, Method: Composition-based stats.
Identities = 24/90 (26%), Positives = 43/90 (47%), Gaps = 1/90 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M + LI +A+ +++ + ++++ L + QAL G V + G F VR R
Sbjct: 1 MNRQQLIKRMAE-LSEMSQAECKRVLAALENTIAQALHEGETVYLPPLGVFEVRHHLPRT 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P + I + + VP F+A LK+ +
Sbjct: 60 GRNPQTGETIEIPLRTVPAFKAAAPLKKAV 89
>gi|227892085|ref|ZP_04009890.1| DNA-binding protein HU [Lactobacillus salivarius ATCC 11741]
gi|227866124|gb|EEJ73545.1| DNA-binding protein HU [Lactobacillus salivarius ATCC 11741]
Length = 91
Score = 97.1 bits (241), Expect = 7e-19, Method: Composition-based stats.
Identities = 35/92 (38%), Positives = 56/92 (60%), Gaps = 1/92 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS L+ IA+K ++ ++ E N + ++ AL G ++++ GFG+F VR+RAAR
Sbjct: 1 MNKSELVSVIAEKM-GVSKKEAEIATNAFISTVSTALTEGRKIQLVGFGTFEVRERAARK 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P K + + + VP F+AGK+LKE +N
Sbjct: 60 GRNPQTGKEMLLPGRNVPVFKAGKSLKEAVNK 91
>gi|149919502|ref|ZP_01907982.1| integration host factor, alpha subunit [Plesiocystis pacifica
SIR-1]
gi|149819627|gb|EDM79054.1| integration host factor, alpha subunit [Plesiocystis pacifica
SIR-1]
Length = 94
Score = 97.1 bits (241), Expect = 7e-19, Method: Composition-based stats.
Identities = 26/94 (27%), Positives = 48/94 (51%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ ++ + + + ++ +V+ + + M Q L G +++I GFG+F VR + R
Sbjct: 1 MTKADIVDKVCDRVGGFSKKEAADLVDQVFDTMKQVLETGEKIKISGFGNFVVRDKKPRP 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSPD 94
R P I++E + V F+ LK LNS +
Sbjct: 61 GRNPQTGDEITIEARRVLTFKPSNVLKVALNSGE 94
>gi|258542769|ref|YP_003188202.1| integration host factor DNA-binding subunit beta [Acetobacter
pasteurianus IFO 3283-01]
gi|256633847|dbj|BAH99822.1| integration host factor DNA-binding beta subunit [Acetobacter
pasteurianus IFO 3283-01]
gi|256636906|dbj|BAI02875.1| integration host factor DNA-binding beta subunit [Acetobacter
pasteurianus IFO 3283-03]
gi|256639959|dbj|BAI05921.1| integration host factor DNA-binding beta subunit [Acetobacter
pasteurianus IFO 3283-07]
gi|256643015|dbj|BAI08970.1| integration host factor DNA-binding beta subunit [Acetobacter
pasteurianus IFO 3283-22]
gi|256646070|dbj|BAI12018.1| integration host factor DNA-binding beta subunit [Acetobacter
pasteurianus IFO 3283-26]
gi|256649123|dbj|BAI15064.1| integration host factor DNA-binding beta subunit [Acetobacter
pasteurianus IFO 3283-32]
gi|256652110|dbj|BAI18044.1| integration host factor DNA-binding beta subunit [Acetobacter
pasteurianus IFO 3283-01-42C]
gi|256655167|dbj|BAI21094.1| integration host factor DNA-binding beta subunit [Acetobacter
pasteurianus IFO 3283-12]
Length = 104
Score = 97.1 bits (241), Expect = 7e-19, Method: Composition-based stats.
Identities = 41/93 (44%), Positives = 62/93 (66%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M +S LI + +KNP L ++ ++VN++ +T +LA G RVE+RGFG+FSV++R R+
Sbjct: 1 MTRSELITALMQKNPHLQLKEATRLVNIVFGTITSSLAEGSRVELRGFGAFSVKERDPRI 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSP 93
R P + V +K+VPFF+ GK L +RLN P
Sbjct: 61 GRNPKTGVQVKVGKKLVPFFKTGKELHQRLNKP 93
>gi|187930619|ref|YP_001901106.1| histone family protein DNA-binding protein [Ralstonia pickettii
12J]
gi|241664809|ref|YP_002983169.1| histone family protein DNA-binding protein [Ralstonia pickettii
12D]
gi|309780383|ref|ZP_07675134.1| DNA-binding protein HU-beta [Ralstonia sp. 5_7_47FAA]
gi|187727509|gb|ACD28674.1| histone family protein DNA-binding protein [Ralstonia pickettii
12J]
gi|240866836|gb|ACS64497.1| histone family protein DNA-binding protein [Ralstonia pickettii
12D]
gi|308921086|gb|EFP66732.1| DNA-binding protein HU-beta [Ralstonia sp. 5_7_47FAA]
Length = 92
Score = 97.1 bits (241), Expect = 7e-19, Method: Composition-based stats.
Identities = 31/92 (33%), Positives = 50/92 (54%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI IA L E+ +N+ L+ + +++ G V + GFG+FS +RA R+
Sbjct: 1 MTKTELIDAIASGVDGLTKAKAEQALNVTLQAIMESVGKGDAVSLIGFGTFSQGERAERM 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
AR P + I VE F+AG+ K+ +N+
Sbjct: 61 ARNPRTGEEIKVEAAKTVKFKAGQKFKDAVNA 92
>gi|71907290|ref|YP_284877.1| histone-like DNA-binding protein [Dechloromonas aromatica RCB]
gi|71846911|gb|AAZ46407.1| Histone-like bacterial DNA-binding protein [Dechloromonas
aromatica RCB]
Length = 94
Score = 97.1 bits (241), Expect = 7e-19, Method: Composition-based stats.
Identities = 36/90 (40%), Positives = 57/90 (63%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
+++S L + ++ P+LN D++ V +L + Q LA GGRVE+RGFGSF++ R RL
Sbjct: 2 IVRSELSQRLHQRFPQLNRGDIDVAVGEILGAIGQQLAKGGRVEVRGFGSFALNYRPPRL 61
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P+ + ++V K P F+AGK L+E +
Sbjct: 62 GRNPMTGERVAVPAKWTPHFKAGKELRELV 91
>gi|59713004|ref|YP_205780.1| HU, DNA-binding transcriptional regulator, alpha subunit [Vibrio
fischeri ES114]
gi|197336341|ref|YP_002157189.1| DNA-binding protein HU-beta [Vibrio fischeri MJ11]
gi|59481105|gb|AAW86892.1| HU, DNA-binding transcriptional regulator, alpha subunit [Vibrio
fischeri ES114]
gi|197317831|gb|ACH67278.1| DNA-binding protein HU-beta [Vibrio fischeri MJ11]
Length = 90
Score = 97.1 bits (241), Expect = 7e-19, Method: Composition-based stats.
Identities = 37/91 (40%), Positives = 52/91 (57%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI IA+K L+ + + LE +T AL +G +V++ GFG+F V RAAR
Sbjct: 1 MNKTQLIDAIAEK-ADLSKAQAKAALEATLEGVTGALKDGEQVQLIGFGTFKVNNRAART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + I ++ VP F AGK LKE +N
Sbjct: 60 GRNPKTGEEIQIKAAKVPAFVAGKALKESVN 90
>gi|83749477|ref|ZP_00946468.1| DNA-binding protein HU [Ralstonia solanacearum UW551]
gi|207722088|ref|YP_002252526.1| histone-like dna-binding protein hu-beta (ns1) [Ralstonia
solanacearum MolK2]
gi|207744856|ref|YP_002261248.1| histone-like dna-binding protein hu-beta (ns1) [Ralstonia
solanacearum IPO1609]
gi|300689790|ref|YP_003750785.1| DNA-binding protein HU-beta, NS1 (HU-1), plays a role in DNA
replication and in rpo translation [Ralstonia
solanacearum PSI07]
gi|300702469|ref|YP_003744069.1| DNA-binding protein hu-beta, ns1 (hu-1), plays a role in DNA
replication and in rpo translation [Ralstonia
solanacearum CFBP2957]
gi|83723874|gb|EAP71061.1| DNA-binding protein HU [Ralstonia solanacearum UW551]
gi|206587262|emb|CAQ17846.1| histone-like dna-binding protein hu-beta (ns1) [Ralstonia
solanacearum MolK2]
gi|206596266|emb|CAQ63193.1| histone-like dna-binding protein hu-beta (ns1) [Ralstonia
solanacearum IPO1609]
gi|299070130|emb|CBJ41420.1| DNA-binding protein HU-beta, NS1 (HU-1), plays a role in DNA
replication and in rpo translation [Ralstonia
solanacearum CFBP2957]
gi|299076850|emb|CBJ49462.1| DNA-binding protein HU-beta, NS1 (HU-1), plays a role in DNA
replication and in rpo translation [Ralstonia
solanacearum PSI07]
Length = 92
Score = 97.1 bits (241), Expect = 7e-19, Method: Composition-based stats.
Identities = 31/91 (34%), Positives = 49/91 (53%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI IA L E+ +N+ L+ + +++ G V + GFG+FS +RA R+
Sbjct: 1 MTKTELIDAIASGVDGLTKAKAEQALNVTLQAIMESVGKGDAVSLIGFGTFSQGERAERM 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
AR P + I VE F+AG+ K+ +N
Sbjct: 61 ARNPRTGEEIKVEAAKTVKFKAGQKFKDAVN 91
>gi|117925417|ref|YP_866034.1| histone family protein DNA-binding protein [Magnetococcus sp.
MC-1]
gi|117609173|gb|ABK44628.1| histone family protein DNA-binding protein [Magnetococcus sp.
MC-1]
Length = 91
Score = 97.1 bits (241), Expect = 7e-19, Method: Composition-based stats.
Identities = 42/91 (46%), Positives = 62/91 (68%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI IA+++ L+ Q+ E V+++L E+ +A+ G RVE+RGFG F VR R +R
Sbjct: 1 MTKSQLIQMIAEQH-NLSKQNAELAVSLVLGEIVKAMERGERVELRGFGVFEVRHRQSRQ 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
AR P ++V EK VPFF+AGK ++ER++
Sbjct: 60 ARNPKTGDSVAVSEKRVPFFKAGKEMRERVD 90
>gi|270700801|ref|ZP_06223048.1| integration host factor, beta subunit [Haemophilus influenzae
HK1212]
gi|319896915|ref|YP_004135110.1| integration host factor beta-subunit [Haemophilus influenzae
F3031]
gi|329123270|ref|ZP_08251838.1| integration host factor beta subunit [Haemophilus aegyptius ATCC
11116]
gi|270315863|gb|EFA27957.1| integration host factor, beta subunit [Haemophilus influenzae
HK1212]
gi|317432419|emb|CBY80774.1| Integration host factor beta-subunit [Haemophilus influenzae
F3031]
gi|327471479|gb|EGF16927.1| integration host factor beta subunit [Haemophilus aegyptius ATCC
11116]
Length = 94
Score = 97.1 bits (241), Expect = 7e-19, Method: Composition-based stats.
Identities = 39/91 (42%), Positives = 59/91 (64%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS L+ ++ K P L +++E +V +LE ++Q+L G RVE+RGFGSFS+ R RL
Sbjct: 1 MTKSELMEKLSAKQPTLPAKEIENMVKDILEFISQSLEKGDRVEVRGFGSFSLHHRQPRL 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P +++ K VP+F+AGK LK R++
Sbjct: 61 GRNPKTGDSVNLSAKSVPYFKAGKELKARVD 91
>gi|227893493|ref|ZP_04011298.1| DNA-binding protein HU [Lactobacillus ultunensis DSM 16047]
gi|227864718|gb|EEJ72139.1| DNA-binding protein HU [Lactobacillus ultunensis DSM 16047]
Length = 91
Score = 97.1 bits (241), Expect = 7e-19, Method: Composition-based stats.
Identities = 33/90 (36%), Positives = 48/90 (53%), Gaps = 1/90 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ L+ +A K KL ++V V+ + + LA G +V++ GFG+F VR RAAR
Sbjct: 3 NKAELVSEVASKT-KLTKKEVAAAVDAIFGSIQDNLAKGEKVQLIGFGTFEVRHRAARKG 61
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P I + VP F+ GK LKE +
Sbjct: 62 RNPQTGDEIQIPASEVPAFKPGKALKEAVK 91
>gi|225420306|ref|ZP_03762609.1| hypothetical protein CLOSTASPAR_06649 [Clostridium asparagiforme
DSM 15981]
gi|225041123|gb|EEG51369.1| hypothetical protein CLOSTASPAR_06649 [Clostridium asparagiforme
DSM 15981]
Length = 91
Score = 97.1 bits (241), Expect = 7e-19, Method: Composition-based stats.
Identities = 37/92 (40%), Positives = 58/92 (63%), Gaps = 1/92 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI +A+K +L+ +D EK V + +T+ L G +V++ GFG+F V RAAR+
Sbjct: 1 MNKTELIAAVAEK-AELSKKDAEKAVKAFTDVVTEELVKGEKVQLVGFGNFEVSARAARV 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
AR P + ++VE P F+AGK LK+ +N+
Sbjct: 60 ARNPKTGEPMNVEASKTPKFKAGKALKDAVNN 91
>gi|86146200|ref|ZP_01064525.1| DNA-binding protein HU-beta [Vibrio sp. MED222]
gi|218709724|ref|YP_002417345.1| DNA-binding protein HU-beta [Vibrio splendidus LGP32]
gi|85835911|gb|EAQ54044.1| DNA-binding protein HU-beta [Vibrio sp. MED222]
gi|218322743|emb|CAV18920.1| DNA-binding protein HU-beta [Vibrio splendidus LGP32]
Length = 91
Score = 97.1 bits (241), Expect = 7e-19, Method: Composition-based stats.
Identities = 37/91 (40%), Positives = 49/91 (53%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS L+ IA + ++ + +N L+E ++ LANG V I GFGSF V RAAR
Sbjct: 1 MNKSQLVEHIAT-SADISKEQAGTALNALVEGISTTLANGDDVSILGFGSFKVNSRAART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + I + P F+AGK LKE N
Sbjct: 60 GRNPRTGEEIQISASKTPAFKAGKALKETCN 90
>gi|229829761|ref|ZP_04455830.1| hypothetical protein GCWU000342_01858 [Shuttleworthia satelles DSM
14600]
gi|229791750|gb|EEP27864.1| hypothetical protein GCWU000342_01858 [Shuttleworthia satelles DSM
14600]
Length = 122
Score = 97.1 bits (241), Expect = 7e-19, Method: Composition-based stats.
Identities = 30/92 (32%), Positives = 53/92 (57%), Gaps = 1/92 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ L+ IA++ L+ +D E + + ++++L G ++++ GFG+F V KR+AR
Sbjct: 32 MNKTELVAAIAEQ-ADLSKKDAEAALKAFTDVVSKSLKKGEKIQLVGFGTFEVSKRSART 90
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P K + + P F+AGK LK+ +N
Sbjct: 91 GRNPQTGKTMKIAASKAPKFKAGKALKDAVNK 122
>gi|328467367|gb|EGF38445.1| DNA-binding protein II HB [Lactobacillus helveticus MTCC 5463]
Length = 91
Score = 97.1 bits (241), Expect = 7e-19, Method: Composition-based stats.
Identities = 32/89 (35%), Positives = 48/89 (53%), Gaps = 1/89 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ L+ +A K KL ++V ++ + + LA G +V++ GFG+F VR RAAR
Sbjct: 3 NKAELVSEVASKT-KLTKKEVAAAIDAIFGSIQDNLAKGEKVQLIGFGTFEVRHRAARKG 61
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P I + VP F+ GK LKE +
Sbjct: 62 RNPQTGDEIEIPASEVPAFKPGKALKEAV 90
>gi|302876598|ref|YP_003845231.1| histone family protein DNA-binding protein [Clostridium
cellulovorans 743B]
gi|307687272|ref|ZP_07629718.1| histone family protein DNA-binding protein [Clostridium
cellulovorans 743B]
gi|302579455|gb|ADL53467.1| histone family protein DNA-binding protein [Clostridium
cellulovorans 743B]
Length = 91
Score = 97.1 bits (241), Expect = 7e-19, Method: Composition-based stats.
Identities = 35/92 (38%), Positives = 56/92 (60%), Gaps = 1/92 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI +IA+K+ L +D E + +E + +AL +V++ GFG+F V++RA R
Sbjct: 1 MNKTELISSIAEKS-GLTKKDAEAALKGFMESIQEALEKKEKVQLVGFGTFEVKERAERT 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P ++ I + VP F+AGK LK+R+N
Sbjct: 60 GRNPRTKEEIKIPASSVPSFKAGKELKDRVNK 91
>gi|225023874|ref|ZP_03713066.1| hypothetical protein EIKCOROL_00740 [Eikenella corrodens ATCC
23834]
gi|224943348|gb|EEG24557.1| hypothetical protein EIKCOROL_00740 [Eikenella corrodens ATCC
23834]
Length = 146
Score = 97.1 bits (241), Expect = 7e-19, Method: Composition-based stats.
Identities = 33/89 (37%), Positives = 46/89 (51%), Gaps = 1/89 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
KS LI IAK+ ++ K ++ + +T AL G V + GFG+F V +RA R
Sbjct: 59 NKSELIEAIAKE-ADISKAAAGKALDGFTKAVTTALKKGDTVTLVGFGTFYVGERAERKG 117
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P K + + P FRAGK LK+ L
Sbjct: 118 RNPQTGKELIIPAAKSPKFRAGKALKDAL 146
>gi|212702487|ref|ZP_03310615.1| hypothetical protein DESPIG_00504 [Desulfovibrio piger ATCC
29098]
gi|212674148|gb|EEB34631.1| hypothetical protein DESPIG_00504 [Desulfovibrio piger ATCC
29098]
Length = 91
Score = 97.1 bits (241), Expect = 7e-19, Method: Composition-based stats.
Identities = 38/92 (41%), Positives = 56/92 (60%), Gaps = 1/92 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI +A+++ L + D +VN ++ M +L G R+EIRGFGSF +++ +
Sbjct: 1 MNKSELIKALAEES-NLPFDDASLVVNTFIDAMKDSLIAGDRIEIRGFGSFKIKEYSGYA 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P + +SV K +PFFRAGK LKE +N
Sbjct: 60 GRNPKTGESVSVVPKRLPFFRAGKELKEYINQ 91
>gi|269468161|gb|EEZ79863.1| DNA-binding protein HU [uncultured SUP05 cluster bacterium]
Length = 91
Score = 97.1 bits (241), Expect = 7e-19, Method: Composition-based stats.
Identities = 38/92 (41%), Positives = 49/92 (53%), Gaps = 1/92 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI IA L+ D K +N + +T A+A G V+I GFGSF R RAAR
Sbjct: 1 MNKTELIEAIASA-AGLSKADAGKALNATTDAITGAMAKGDGVQITGFGSFITRARAARS 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P I ++ V F+AGK LKE +N
Sbjct: 60 GRNPQTGATIQIKASTVAAFKAGKALKEAVNK 91
>gi|239629128|ref|ZP_04672159.1| conserved hypothetical protein [Clostridiales bacterium
1_7_47_FAA]
gi|239519274|gb|EEQ59140.1| conserved hypothetical protein [Clostridiales bacterium
1_7_47FAA]
Length = 91
Score = 97.1 bits (241), Expect = 7e-19, Method: Composition-based stats.
Identities = 34/92 (36%), Positives = 53/92 (57%), Gaps = 1/92 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI +A+K +L+ +D EK V + + + L GG+V++ GFG+F V +RAAR
Sbjct: 1 MNKTELIAAVAEK-AELSKKDAEKAVKAFTDAVAEELVKGGKVQLVGFGTFEVAERAARE 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P + + P F+AGK LK+ +N
Sbjct: 60 GRNPKTGNAMPIPASKTPKFKAGKALKDEVNK 91
>gi|33240850|ref|NP_875792.1| histone-like DNA-binding protein [Prochlorococcus marinus subsp.
marinus str. CCMP1375]
gi|33238379|gb|AAQ00445.1| Bacterial nucleoid DNA-binding protein [Prochlorococcus marinus
subsp. marinus str. CCMP1375]
Length = 91
Score = 97.1 bits (241), Expect = 7e-19, Method: Composition-based stats.
Identities = 32/90 (35%), Positives = 49/90 (54%), Gaps = 1/90 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ L+ +A + +L DV +V+ +E + ++ G +V I GFGSF R R+AR
Sbjct: 1 MNKADLVNLVAART-ELTKTDVALVVDAAIETIVDSVVEGKKVSILGFGSFEPRDRSARQ 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
P + I + K VP F AGK K+R+
Sbjct: 60 GLNPKTGEKIKIPAKRVPAFTAGKLFKDRV 89
>gi|134104523|pdb|2IIF|A Chain A, Single Chain Integration Host Factor Mutant Protein
(Scihf2- K45ae) In Complex With Dna
Length = 204
Score = 97.1 bits (241), Expect = 7e-19, Method: Composition-based stats.
Identities = 29/91 (31%), Positives = 51/91 (56%), Gaps = 1/91 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ + + K L+ +D +++V + EE+ +AL NG +VE+ GFG+F +R + R
Sbjct: 48 TKAEMSEYLFDKL-GLSKRDAKELVELFFEEIRRALENGEQVELSGFGNFDLRDKNQRPG 106
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P + I + + V FR G+ LK R+ +
Sbjct: 107 RNPKTGEDIPITARRVVTFRPGQKLKSRVEN 137
Score = 70.6 bits (172), Expect = 7e-11, Method: Composition-based stats.
Identities = 26/52 (50%), Positives = 33/52 (63%)
Query: 40 GGRVEIRGFGSFSVRKRAARLARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
G R+EIRGFGSFS+ RA R R P + +E K VP F+ GK L++R N
Sbjct: 141 GERIEIRGFGSFSLHYRAPRTGRNPKTGDKVELEGKYVPHFKPGKELRDRAN 192
>gi|115375494|ref|ZP_01462754.1| integration host factor, alpha subunit [Stigmatella aurantiaca
DW4/3-1]
gi|310821386|ref|YP_003953744.1| integration host factor subunit alpha [Stigmatella aurantiaca
DW4/3-1]
gi|115367537|gb|EAU66512.1| integration host factor, alpha subunit [Stigmatella aurantiaca
DW4/3-1]
gi|309394458|gb|ADO71917.1| Integration host factor subunit alpha [Stigmatella aurantiaca
DW4/3-1]
Length = 134
Score = 97.1 bits (241), Expect = 7e-19, Method: Composition-based stats.
Identities = 28/93 (30%), Positives = 51/93 (54%), Gaps = 1/93 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ +I + +K + ++ +IV ++ + + + L G +++I GFG+F VR++ AR+
Sbjct: 1 MTKADIIEGVYEK-VGFSKKESAEIVELVFDTLKETLERGDKIKISGFGNFQVRQKKARV 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSP 93
R P K I + + V FR + LK LN
Sbjct: 60 GRNPQTGKEIEISARRVLTFRPSQVLKSALNGE 92
>gi|94264784|ref|ZP_01288562.1| Histone-like bacterial DNA-binding protein [delta proteobacterium
MLMS-1]
gi|93454773|gb|EAT05028.1| Histone-like bacterial DNA-binding protein [delta proteobacterium
MLMS-1]
Length = 91
Score = 97.1 bits (241), Expect = 7e-19, Method: Composition-based stats.
Identities = 32/92 (34%), Positives = 52/92 (56%), Gaps = 1/92 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K L+ +A + K+ D +++V ++L MT +L NG ++ I GFG+F VR+RAA+
Sbjct: 1 MNKGELVDKVAAE-GKITKADADRLVKVVLGSMTDSLTNGEKITIPGFGTFEVRERAAKQ 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P + + + F+ GK LK+ LN
Sbjct: 60 GRNPQTGATVEIPARKAVAFKPGKTLKDVLNK 91
>gi|13476997|ref|NP_108567.1| DNA-binding protein HRm [Mesorhizobium loti MAFF303099]
gi|260460894|ref|ZP_05809144.1| histone family protein DNA-binding protein [Mesorhizobium
opportunistum WSM2075]
gi|319784101|ref|YP_004143577.1| histone family protein DNA-binding protein [Mesorhizobium ciceri
biovar biserrulae WSM1271]
gi|14027760|dbj|BAB54353.1| DNA-binding protein; HRm [Mesorhizobium loti MAFF303099]
gi|259033471|gb|EEW34732.1| histone family protein DNA-binding protein [Mesorhizobium
opportunistum WSM2075]
gi|317169989|gb|ADV13527.1| histone family protein DNA-binding protein [Mesorhizobium ciceri
biovar biserrulae WSM1271]
Length = 90
Score = 97.1 bits (241), Expect = 7e-19, Method: Composition-based stats.
Identities = 31/91 (34%), Positives = 48/91 (52%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ L+ +A ++ D + V+ + +T L GG V + GFG+F+V KRAA
Sbjct: 1 MNKNELVSAVADA-ASISKGDAQSAVDAVFSVITGELKKGGDVRLVGFGNFTVSKRAAST 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + + + VP F AGK LK+ +N
Sbjct: 60 GRNPQTGAEVKIPARTVPKFSAGKGLKDAVN 90
>gi|329119849|ref|ZP_08248523.1| DNA-binding protein HU-beta [Neisseria bacilliformis ATCC
BAA-1200]
gi|327464005|gb|EGF10316.1| DNA-binding protein HU-beta [Neisseria bacilliformis ATCC
BAA-1200]
Length = 89
Score = 97.1 bits (241), Expect = 7e-19, Method: Composition-based stats.
Identities = 32/90 (35%), Positives = 49/90 (54%), Gaps = 1/90 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI +A++ ++ K ++ ++ +T AL G V + GFGSF V +RA R
Sbjct: 1 MNKSELIEAMAQE-ADISKAAAAKALDGMVNAITAALKKGDTVTVVGFGSFYVGERAERQ 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P + +++ P FRAGK LK+ L
Sbjct: 60 GRNPKTGEPLTIAAAKTPKFRAGKTLKDAL 89
>gi|319654516|ref|ZP_08008600.1| non-specific DNA-binding protein [Bacillus sp. 2_A_57_CT2]
gi|317393826|gb|EFV74580.1| non-specific DNA-binding protein [Bacillus sp. 2_A_57_CT2]
Length = 92
Score = 97.1 bits (241), Expect = 7e-19, Method: Composition-based stats.
Identities = 32/92 (34%), Positives = 53/92 (57%), Gaps = 1/92 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ L+ +A+++ +L+ +D K V+ + E +T L G + + GFG+F VR+RAAR
Sbjct: 1 MNKTELVNAVAERS-ELSKKDASKAVDAVFEAVTNVLKEGKKAQFLGFGNFEVRERAARK 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P + I + VP F GK LK+ + +
Sbjct: 60 GRNPQTGEEIEIAASKVPAFSPGKALKDAVKN 91
>gi|228994795|ref|ZP_04154593.1| DNA-binding protein HU [Bacillus pseudomycoides DSM 12442]
gi|228998490|ref|ZP_04158078.1| DNA-binding protein HU [Bacillus mycoides Rock3-17]
gi|229005965|ref|ZP_04163656.1| DNA-binding protein HU [Bacillus mycoides Rock1-4]
gi|228755282|gb|EEM04636.1| DNA-binding protein HU [Bacillus mycoides Rock1-4]
gi|228761215|gb|EEM10173.1| DNA-binding protein HU [Bacillus mycoides Rock3-17]
gi|228764903|gb|EEM13659.1| DNA-binding protein HU [Bacillus pseudomycoides DSM 12442]
Length = 90
Score = 97.1 bits (241), Expect = 7e-19, Method: Composition-based stats.
Identities = 33/91 (36%), Positives = 55/91 (60%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI +A + +++ ++ +V ++E +T LA G +V++ GFG+F VR+RAAR
Sbjct: 1 MNKTELIKNVA-QTAEISQKEATVVVQSVVESITNTLAAGEKVQLIGFGTFEVRERAART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + + + VP F+AGK LKE +
Sbjct: 60 GRNPQTGEEMQIAASKVPAFKAGKELKEAVK 90
>gi|239817235|ref|YP_002946145.1| histone family protein DNA-binding protein [Variovorax paradoxus
S110]
gi|239803812|gb|ACS20879.1| histone family protein DNA-binding protein [Variovorax paradoxus
S110]
Length = 93
Score = 97.1 bits (241), Expect = 8e-19, Method: Composition-based stats.
Identities = 33/92 (35%), Positives = 51/92 (55%), Gaps = 1/92 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI IA+ L+ D + + LE++++AL G V++ GFG+FSV RA R
Sbjct: 1 MNKTELIAAIAEDT-NLSKADAGRAFDSALEQLSRALVRGETVQLIGFGTFSVADRAERT 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P + I+++ F AGK LK+ +N
Sbjct: 60 GRNPSTGEQITIKASKSAKFAAGKALKDAINQ 91
>gi|123430771|ref|XP_001307951.1| DNA-binding protein HU [Trichomonas vaginalis G3]
gi|121889606|gb|EAX95021.1| DNA-binding protein HU, putative [Trichomonas vaginalis G3]
Length = 92
Score = 97.1 bits (241), Expect = 8e-19, Method: Composition-based stats.
Identities = 37/93 (39%), Positives = 57/93 (61%), Gaps = 2/93 (2%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS L+ +IA+K+ L +D E+ +N + + +ALA+G +V++ GFG+F VR+R AR
Sbjct: 1 MNKSELVASIAEKS-GLTKKDAEQALNGFITSVQEALADGEKVQLVGFGTFEVRQRKARE 59
Query: 61 ARAPLAQKV-ISVEEKMVPFFRAGKNLKERLNS 92
R P + I + P FR+GK LKE +N
Sbjct: 60 GRNPRNPEEVIKIPASKAPVFRSGKALKEAVNK 92
>gi|163943398|ref|YP_001642628.1| histone family protein DNA-binding protein [Bacillus
weihenstephanensis KBAB4]
gi|163865595|gb|ABY46653.1| histone family protein DNA-binding protein [Bacillus
weihenstephanensis KBAB4]
Length = 90
Score = 97.1 bits (241), Expect = 8e-19, Method: Composition-based stats.
Identities = 35/91 (38%), Positives = 52/91 (57%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ L +A+K +L +D LL+ +T ALANG +V+ GFG+F VR+R+AR
Sbjct: 1 MNKTELTKVVAEK-AELTQKDAAAATQALLDTITNALANGDKVQTLGFGTFEVRERSART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + + + P F+AGK LKE +
Sbjct: 60 GRNPQTGEEMQIAASKAPAFKAGKELKEAVK 90
>gi|30021822|ref|NP_833453.1| DNA-binding protein HU [Bacillus cereus ATCC 14579]
gi|30263731|ref|NP_846108.1| DNA-binding protein HU [Bacillus anthracis str. Ames]
gi|42782806|ref|NP_980053.1| DNA-binding protein HU [Bacillus cereus ATCC 10987]
gi|47529146|ref|YP_020495.1| DNA-binding protein HU [Bacillus anthracis str. 'Ames Ancestor']
gi|47568219|ref|ZP_00238922.1| DNA-binding protein HU [Bacillus cereus G9241]
gi|49186575|ref|YP_029827.1| DNA-binding protein HU [Bacillus anthracis str. Sterne]
gi|49479195|ref|YP_037793.1| DNA-binding protein HU [Bacillus thuringiensis serovar konkukian
str. 97-27]
gi|52141761|ref|YP_085068.1| DNA-binding protein HU [Bacillus cereus E33L]
gi|167636022|ref|ZP_02394328.1| DNA-binding protein HU [Bacillus anthracis str. A0442]
gi|167639780|ref|ZP_02398049.1| DNA-binding protein HU [Bacillus anthracis str. A0193]
gi|170706770|ref|ZP_02897228.1| DNA-binding protein HU [Bacillus anthracis str. A0389]
gi|177652045|ref|ZP_02934591.1| DNA-binding protein HU [Bacillus anthracis str. A0174]
gi|190568477|ref|ZP_03021384.1| DNA-binding protein HU [Bacillus anthracis Tsiankovskii-I]
gi|196034180|ref|ZP_03101590.1| DNA-binding protein HU [Bacillus cereus W]
gi|196038306|ref|ZP_03105615.1| DNA-binding protein HU [Bacillus cereus NVH0597-99]
gi|196044455|ref|ZP_03111690.1| DNA-binding protein HU [Bacillus cereus 03BB108]
gi|206968651|ref|ZP_03229606.1| DNA-binding protein HU [Bacillus cereus AH1134]
gi|217961152|ref|YP_002339720.1| DNA-binding protein HU [Bacillus cereus AH187]
gi|218235888|ref|YP_002368531.1| DNA-binding protein HU [Bacillus cereus B4264]
gi|218898826|ref|YP_002447237.1| DNA-binding protein HU [Bacillus cereus G9842]
gi|218904856|ref|YP_002452690.1| DNA-binding protein HU [Bacillus cereus AH820]
gi|222097183|ref|YP_002531240.1| DNA-binding protein hu [Bacillus cereus Q1]
gi|225865703|ref|YP_002751081.1| DNA-binding protein HU [Bacillus cereus 03BB102]
gi|227813371|ref|YP_002813380.1| DNA-binding protein HU [Bacillus anthracis str. CDC 684]
gi|228922442|ref|ZP_04085744.1| DNA-binding protein HU [Bacillus thuringiensis serovar
huazhongensis BGSC 4BD1]
gi|228928776|ref|ZP_04091810.1| DNA-binding protein HU [Bacillus thuringiensis serovar
pondicheriensis BGSC 4BA1]
gi|229157305|ref|ZP_04285383.1| DNA-binding protein HU [Bacillus cereus ATCC 4342]
gi|229162660|ref|ZP_04290617.1| DNA-binding protein HU [Bacillus cereus R309803]
gi|229604479|ref|YP_002867967.1| DNA-binding protein HU [Bacillus anthracis str. A0248]
gi|254683564|ref|ZP_05147424.1| HU family DNA-binding protein [Bacillus anthracis str.
CNEVA-9066]
gi|254721154|ref|ZP_05182945.1| HU family DNA-binding protein [Bacillus anthracis str. A1055]
gi|254735764|ref|ZP_05193470.1| HU family DNA-binding protein [Bacillus anthracis str. Western
North America USA6153]
gi|254739537|ref|ZP_05197232.1| HU family DNA-binding protein [Bacillus anthracis str. Kruger B]
gi|254751106|ref|ZP_05203145.1| HU family DNA-binding protein [Bacillus anthracis str. Vollum]
gi|254759423|ref|ZP_05211448.1| HU family DNA-binding protein [Bacillus anthracis str. Australia
94]
gi|296504231|ref|YP_003665931.1| DNA-binding protein HU [Bacillus thuringiensis BMB171]
gi|301055218|ref|YP_003793429.1| histone family protein DNA-binding protein [Bacillus anthracis
CI]
gi|29897378|gb|AAP10654.1| DNA-binding protein HU [Bacillus cereus ATCC 14579]
gi|30258375|gb|AAP27594.1| DNA-binding protein HU [Bacillus anthracis str. Ames]
gi|42738733|gb|AAS42661.1| DNA-binding protein HU [Bacillus cereus ATCC 10987]
gi|47504294|gb|AAT32970.1| DNA-binding protein HU [Bacillus anthracis str. 'Ames Ancestor']
gi|47555047|gb|EAL13395.1| DNA-binding protein HU [Bacillus cereus G9241]
gi|49180502|gb|AAT55878.1| DNA-binding protein HU [Bacillus anthracis str. Sterne]
gi|49330751|gb|AAT61397.1| DNA-binding protein HU [Bacillus thuringiensis serovar konkukian
str. 97-27]
gi|51975230|gb|AAU16780.1| DNA-binding protein HU [Bacillus cereus E33L]
gi|167512181|gb|EDR87558.1| DNA-binding protein HU [Bacillus anthracis str. A0193]
gi|167528534|gb|EDR91296.1| DNA-binding protein HU [Bacillus anthracis str. A0442]
gi|170128188|gb|EDS97057.1| DNA-binding protein HU [Bacillus anthracis str. A0389]
gi|172082414|gb|EDT67479.1| DNA-binding protein HU [Bacillus anthracis str. A0174]
gi|190560481|gb|EDV14459.1| DNA-binding protein HU [Bacillus anthracis Tsiankovskii-I]
gi|195993254|gb|EDX57212.1| DNA-binding protein HU [Bacillus cereus W]
gi|196024490|gb|EDX63162.1| DNA-binding protein HU [Bacillus cereus 03BB108]
gi|196030714|gb|EDX69312.1| DNA-binding protein HU [Bacillus cereus NVH0597-99]
gi|206735692|gb|EDZ52850.1| DNA-binding protein HU [Bacillus cereus AH1134]
gi|217063322|gb|ACJ77572.1| DNA-binding protein HU [Bacillus cereus AH187]
gi|218163845|gb|ACK63837.1| DNA-binding protein HU [Bacillus cereus B4264]
gi|218538783|gb|ACK91181.1| DNA-binding protein HU [Bacillus cereus AH820]
gi|218545282|gb|ACK97676.1| DNA-binding protein HU [Bacillus cereus G9842]
gi|221241241|gb|ACM13951.1| DNA-binding protein HU [Bacillus cereus Q1]
gi|225787211|gb|ACO27428.1| DNA-binding protein HU [Bacillus cereus 03BB102]
gi|227004634|gb|ACP14377.1| DNA-binding protein HU [Bacillus anthracis str. CDC 684]
gi|228620542|gb|EEK77411.1| DNA-binding protein HU [Bacillus cereus R309803]
gi|228626032|gb|EEK82781.1| DNA-binding protein HU [Bacillus cereus ATCC 4342]
gi|228830861|gb|EEM76464.1| DNA-binding protein HU [Bacillus thuringiensis serovar
pondicheriensis BGSC 4BA1]
gi|228837156|gb|EEM82495.1| DNA-binding protein HU [Bacillus thuringiensis serovar
huazhongensis BGSC 4BD1]
gi|229268887|gb|ACQ50524.1| DNA-binding protein HU [Bacillus anthracis str. A0248]
gi|296325283|gb|ADH08211.1| DNA-binding protein HU [Bacillus thuringiensis BMB171]
gi|300377387|gb|ADK06291.1| histone family protein DNA-binding protein [Bacillus cereus
biovar anthracis str. CI]
gi|324327620|gb|ADY22880.1| HU family DNA-binding protein [Bacillus thuringiensis serovar
finitimus YBT-020]
gi|326941437|gb|AEA17333.1| DNA-binding protein HU [Bacillus thuringiensis serovar chinensis
CT-43]
Length = 90
Score = 97.1 bits (241), Expect = 8e-19, Method: Composition-based stats.
Identities = 34/91 (37%), Positives = 56/91 (61%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI +A +N +++ ++ +V ++E +T LA G +V++ GFG+F VR+RAAR
Sbjct: 1 MNKTELIKNVA-QNAEISQKEATVVVQTVVESITNTLAAGEKVQLIGFGTFEVRERAART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + + + VP F+AGK LKE +
Sbjct: 60 GRNPQTGEEMQIAASKVPAFKAGKELKEAVK 90
>gi|253987885|ref|YP_003039241.1| DNA binding protein hu-alpha [Photorhabdus asymbiotica subsp.
asymbiotica ATCC 43949]
gi|253779335|emb|CAQ82496.1| dna-binding protein hu-alpha (ns2) (hu-2) [Photorhabdus
asymbiotica]
Length = 90
Score = 97.1 bits (241), Expect = 8e-19, Method: Composition-based stats.
Identities = 31/91 (34%), Positives = 46/91 (50%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ L+ IA+ L + + L +T++L G V++ GFG+F V RA R
Sbjct: 1 MNKTELVDAIAEST-DLTKAQAKAALESTLNAITESLKAGDSVQLVGFGTFKVNHRAERT 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P K I++ VP F AGK LK+ +
Sbjct: 60 GRNPQTGKEITIAAANVPAFSAGKALKDAVK 90
>gi|188591467|ref|YP_001796066.1| HU, DNA-binding transcriptional regulator, beta subunit
[Cupriavidus taiwanensis]
gi|170938862|emb|CAP63863.1| HU, DNA-binding transcriptional regulator, beta subunit
[Cupriavidus taiwanensis LMG 19424]
Length = 92
Score = 96.8 bits (240), Expect = 8e-19, Method: Composition-based stats.
Identities = 31/92 (33%), Positives = 46/92 (50%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI IA L E+ +N+ L + +A G + + GFGSFS +R R+
Sbjct: 1 MTKSELIDAIAAGVDGLTKAKAEQALNVTLSAIMDTVARGDALNLVGFGSFSKGERGERI 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
AR P + I+V+ FR G+ K+ N+
Sbjct: 61 ARNPRTGEKITVDAAKTVKFRPGQKFKDAANA 92
>gi|218290666|ref|ZP_03494757.1| histone family protein DNA-binding protein [Alicyclobacillus
acidocaldarius LAA1]
gi|258510204|ref|YP_003183638.1| histone family protein DNA-binding protein [Alicyclobacillus
acidocaldarius subsp. acidocaldarius DSM 446]
gi|218239331|gb|EED06529.1| histone family protein DNA-binding protein [Alicyclobacillus
acidocaldarius LAA1]
gi|257476930|gb|ACV57249.1| histone family protein DNA-binding protein [Alicyclobacillus
acidocaldarius subsp. acidocaldarius DSM 446]
Length = 90
Score = 96.8 bits (240), Expect = 8e-19, Method: Composition-based stats.
Identities = 39/88 (44%), Positives = 51/88 (57%), Gaps = 1/88 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K LI +A+K L +D E VN + E + +ALANG +V+I GFG+F R RAAR
Sbjct: 1 MNKMELINRVAEKT-NLKKKDAESAVNAVFEIIEEALANGEKVQIIGFGTFETRSRAARS 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKE 88
R P +VI + VP F+ G LKE
Sbjct: 60 GRNPQTGEVIEIPASTVPAFKPGNKLKE 87
>gi|169335876|ref|ZP_02863069.1| hypothetical protein ANASTE_02309 [Anaerofustis stercorihominis
DSM 17244]
gi|169258614|gb|EDS72580.1| hypothetical protein ANASTE_02309 [Anaerofustis stercorihominis
DSM 17244]
Length = 90
Score = 96.8 bits (240), Expect = 8e-19, Method: Composition-based stats.
Identities = 29/91 (31%), Positives = 51/91 (56%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS L+ +++K L ++ + + +E +T+ L +V + GFG+F V++RA R
Sbjct: 1 MNKSELVSALSEKT-GLTKKECDNCLGAFIETITETLQKQDKVSLVGFGTFEVKERAERQ 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
P ++ I++ P F+AGK LK+ LN
Sbjct: 60 GINPQTKEKITIPASNAPVFKAGKALKDSLN 90
>gi|104773912|ref|YP_618892.1| histone-like DNA-binding protein [Lactobacillus delbrueckii
subsp. bulgaricus ATCC 11842]
gi|300812170|ref|ZP_07092614.1| DNA-binding protein HU [Lactobacillus delbrueckii subsp.
bulgaricus PB2003/044-T3-4]
gi|313123538|ref|YP_004033797.1| histone-like DNA-binding protein [Lactobacillus delbrueckii
subsp. bulgaricus ND02]
gi|21633223|gb|AAM22485.1| HlbA [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842]
gi|103422993|emb|CAI97675.1| Histone-like DNA-binding protein [Lactobacillus delbrueckii
subsp. bulgaricus ATCC 11842]
gi|300496855|gb|EFK31933.1| DNA-binding protein HU [Lactobacillus delbrueckii subsp.
bulgaricus PB2003/044-T3-4]
gi|312280101|gb|ADQ60820.1| Histone-like DNA-binding protein [Lactobacillus delbrueckii
subsp. bulgaricus ND02]
gi|325684299|gb|EGD26472.1| DNA-binding protein HU [Lactobacillus delbrueckii subsp. lactis
DSM 20072]
Length = 91
Score = 96.8 bits (240), Expect = 8e-19, Method: Composition-based stats.
Identities = 34/90 (37%), Positives = 51/90 (56%), Gaps = 1/90 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ L+ +A K KL +DV + V+ + E + + LA G +V++ GFG+F VR RAAR
Sbjct: 3 NKAELVSEVAAKT-KLTKKDVSEAVDAVFEAIQEDLAKGEKVQLIGFGTFEVRDRAARKG 61
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P I + VP F+ GK LK+ +
Sbjct: 62 RNPQTGAEIEIPASKVPAFKPGKALKDAVK 91
>gi|163941411|ref|YP_001646295.1| histone family protein DNA-binding protein [Bacillus
weihenstephanensis KBAB4]
gi|229012904|ref|ZP_04170069.1| DNA-binding protein HU [Bacillus mycoides DSM 2048]
gi|229065846|ref|ZP_04201044.1| DNA-binding protein HU [Bacillus cereus AH603]
gi|229134528|ref|ZP_04263339.1| DNA-binding protein HU [Bacillus cereus BDRD-ST196]
gi|163863608|gb|ABY44667.1| histone family protein DNA-binding protein [Bacillus
weihenstephanensis KBAB4]
gi|228648921|gb|EEL04945.1| DNA-binding protein HU [Bacillus cereus BDRD-ST196]
gi|228715422|gb|EEL67252.1| DNA-binding protein HU [Bacillus cereus AH603]
gi|228748158|gb|EEL98018.1| DNA-binding protein HU [Bacillus mycoides DSM 2048]
Length = 90
Score = 96.8 bits (240), Expect = 8e-19, Method: Composition-based stats.
Identities = 33/91 (36%), Positives = 57/91 (62%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI +A +N +++ ++ ++ ++E +T +LA G +V++ GFG+F VR+RAAR
Sbjct: 1 MNKTELIKNVA-QNAEISQKEATVVLQTVVESITNSLAAGEKVQLIGFGTFEVRERAART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + + + VP F+AGK LKE +
Sbjct: 60 GRNPQTGEEMQIAASKVPAFKAGKELKEAVK 90
>gi|307545110|ref|YP_003897589.1| integration host factor subunit alpha [Halomonas elongata DSM 2581]
gi|307217134|emb|CBV42404.1| integration host factor subunit alpha [Halomonas elongata DSM 2581]
Length = 122
Score = 96.8 bits (240), Expect = 8e-19, Method: Composition-based stats.
Identities = 24/97 (24%), Positives = 46/97 (47%), Gaps = 1/97 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ L + + L+ ++ + +V EE+ L +V++ GFG+F +R + R
Sbjct: 27 TKAELAEHLHAEL-GLSKREAKSMVESFFEEIRGCLRENEQVKLSGFGNFDLRDKRERPG 85
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDSTLS 98
R P + I + + V FR G+ LK ++ + S
Sbjct: 86 RNPKTGEEIPISARRVVTFRPGQKLKSQVEAYTGDQS 122
>gi|291561223|emb|CBL40022.1| Bacterial nucleoid DNA-binding protein [butyrate-producing
bacterium SS3/4]
Length = 91
Score = 96.8 bits (240), Expect = 8e-19, Method: Composition-based stats.
Identities = 32/92 (34%), Positives = 54/92 (58%), Gaps = 1/92 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI +A++ +L+ +D EK + + + L G +V++ GFG+F V +R AR
Sbjct: 1 MNKTELIAAVAEQ-AELSKKDAEKALKAFTDVIAAELVKGEKVQLVGFGTFEVSEREARE 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R PL + I++ P F+AGK LK+ +N+
Sbjct: 60 GRNPLTGEKITIAASKNPKFKAGKALKDMVNA 91
>gi|327398825|ref|YP_004339694.1| histone family protein DNA-binding protein [Hippea maritima DSM
10411]
gi|327181454|gb|AEA33635.1| histone family protein DNA-binding protein [Hippea maritima DSM
10411]
Length = 404
Score = 96.8 bits (240), Expect = 8e-19, Method: Composition-based stats.
Identities = 32/91 (35%), Positives = 51/91 (56%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS L+ IA+K + + VN ++ +++AL +G V I GFG F V +R R
Sbjct: 314 MTKSELVEAIARKM-GSSVKGANAFVNAFVDVVSEALKSGKSVSITGFGKFYVSQRGERT 372
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P +VI ++ +P F+AG+ LK+ +N
Sbjct: 373 GRNPQTGEVIKIKPHKIPAFKAGQVLKQTIN 403
>gi|313889131|ref|ZP_07822787.1| DNA-binding protein HU [Peptoniphilus harei ACS-146-V-Sch2b]
gi|312844871|gb|EFR32276.1| DNA-binding protein HU [Peptoniphilus harei ACS-146-V-Sch2b]
Length = 92
Score = 96.8 bits (240), Expect = 8e-19, Method: Composition-based stats.
Identities = 37/93 (39%), Positives = 57/93 (61%), Gaps = 2/93 (2%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS L+ +IA+K+ L +D E+ +N + + +ALA+G +V++ GFG+F VR+R AR
Sbjct: 1 MNKSELVASIAEKS-GLTKKDAEQALNGFISSVQEALADGEKVQLVGFGTFEVRQRKARE 59
Query: 61 ARAPLAQKV-ISVEEKMVPFFRAGKNLKERLNS 92
R P + I + P FR+GK LKE +N
Sbjct: 60 GRNPRNPEEVIKIPASKAPVFRSGKALKEAVNK 92
>gi|293604706|ref|ZP_06687106.1| integration host factor subunit alpha [Achromobacter piechaudii
ATCC 43553]
gi|292816875|gb|EFF75956.1| integration host factor subunit alpha [Achromobacter piechaudii
ATCC 43553]
Length = 113
Score = 96.8 bits (240), Expect = 8e-19, Method: Composition-based stats.
Identities = 28/89 (31%), Positives = 46/89 (51%), Gaps = 1/89 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ L + ++ LN ++ + IV+ EE+ ALA G V++ GFG+F VR + R
Sbjct: 14 TKAELAELLFER-VGLNKREAKDIVDTFFEEIRDALARGDSVKLSGFGNFQVRDKPPRPG 72
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P + I + + V F A + LK +
Sbjct: 73 RNPKTGETIPIAARRVVTFHASQKLKSVV 101
>gi|114327968|ref|YP_745125.1| DNA-binding protein HU [Granulibacter bethesdensis CGDNIH1]
gi|114316142|gb|ABI62202.1| DNA-binding protein HU [Granulibacter bethesdensis CGDNIH1]
Length = 97
Score = 96.8 bits (240), Expect = 8e-19, Method: Composition-based stats.
Identities = 33/96 (34%), Positives = 49/96 (51%), Gaps = 1/96 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K LI +A + +L + V+ +L + AL V + GFGSFSV R A +
Sbjct: 1 MNKMELITAVADEL-ELPRSRAAQAVDAVLGSIESALKRHEEVRLVGFGSFSVASRKASV 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDST 96
R P + I++ + F+AGK LK+ LN DS+
Sbjct: 60 GRNPRTGEEIAIPPALSVRFKAGKTLKDALNEQDSS 95
>gi|153004748|ref|YP_001379073.1| integration host factor subunit alpha [Anaeromyxobacter sp.
Fw109-5]
gi|166918497|sp|A7HBJ3|IHFA_ANADF RecName: Full=Integration host factor subunit alpha;
Short=IHF-alpha
gi|152028321|gb|ABS26089.1| integration host factor, alpha subunit [Anaeromyxobacter sp.
Fw109-5]
Length = 99
Score = 96.8 bits (240), Expect = 9e-19, Method: Composition-based stats.
Identities = 27/91 (29%), Positives = 52/91 (57%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ +I ++ +K + ++ +IV M+ + + + L G +++I GFG+F VR++ +R+
Sbjct: 1 MTKADIIESVYEK-VGFSKKEAAEIVEMVFDTIKETLERGEKIKISGFGNFIVREKKSRV 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + I + + V FR + LK LN
Sbjct: 60 GRNPQTGEEIEISARRVLTFRPSQVLKNALN 90
>gi|296112017|ref|YP_003622399.1| DNA-binding protein II [Leuconostoc kimchii IMSNU 11154]
gi|300173423|ref|YP_003772589.1| DNA-binding protein HU [Leuconostoc gasicomitatum LMG 18811]
gi|295833549|gb|ADG41430.1| DNA-binding protein II [Leuconostoc kimchii IMSNU 11154]
gi|299887802|emb|CBL91770.1| DNA-binding protein HU [Leuconostoc gasicomitatum LMG 18811]
Length = 91
Score = 96.8 bits (240), Expect = 9e-19, Method: Composition-based stats.
Identities = 33/90 (36%), Positives = 47/90 (52%), Gaps = 1/90 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K L+ ++AK L +D V+ + + AL NG +V++ GFG+F VR RAAR
Sbjct: 3 NKQELVDSVAKAT-GLTKKDATASVDAVFASIEAALKNGEKVQLIGFGNFEVRDRAARKG 61
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P I + VP F+ GK LKE +
Sbjct: 62 RNPQTGAEIEIPASKVPAFKPGKALKEAVK 91
>gi|118602405|ref|YP_903620.1| histone family protein DNA-binding protein [Candidatus Ruthia
magnifica str. Cm (Calyptogena magnifica)]
gi|118567344|gb|ABL02149.1| histone family protein DNA-binding protein [Candidatus Ruthia
magnifica str. Cm (Calyptogena magnifica)]
Length = 91
Score = 96.8 bits (240), Expect = 9e-19, Method: Composition-based stats.
Identities = 37/92 (40%), Positives = 50/92 (54%), Gaps = 1/92 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI IA L+ D + +N + +T A+A+ V++ GFGSF VR RAAR
Sbjct: 1 MNKSELIDAIALA-ANLSKVDASRALNATTDAITGAMASSDGVQLTGFGSFVVRNRAART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P I ++ V F+AGK LKE +N
Sbjct: 60 GRNPQTGATIQIKASKVAAFKAGKALKEAVNK 91
>gi|218848087|ref|YP_002454740.1| DNA-binding protein HU [Bacillus cereus G9842]
gi|218546218|gb|ACK98611.1| DNA-binding protein HU [Bacillus cereus G9842]
Length = 90
Score = 96.8 bits (240), Expect = 9e-19, Method: Composition-based stats.
Identities = 34/91 (37%), Positives = 55/91 (60%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K++LI +A+ + +L +D +L+ +T+AL NG +V++ GFG+F VR+RAAR
Sbjct: 1 MNKTALIKHVAE-HTELTQKDASAATQAVLDTITEALMNGEKVQLIGFGTFEVRERAART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + + + VP F+AGK LK +
Sbjct: 60 GRNPQTGEEMHIAASKVPAFKAGKELKVAVK 90
>gi|270160386|ref|ZP_06189035.1| DNA-binding protein HU-beta [Legionella longbeachae D-4968]
gi|308051556|ref|YP_003915130.1| HU, DNA-binding transcriptional regulator, beta subunit
[Legionella longbeachae NSW150]
gi|269987096|gb|EEZ93358.1| DNA-binding protein HU-beta [Legionella longbeachae D-4968]
gi|288859981|emb|CBJ13969.1| HU, DNA-binding transcriptional regulator, beta subunit
[Legionella longbeachae NSW150]
Length = 92
Score = 96.8 bits (240), Expect = 9e-19, Method: Composition-based stats.
Identities = 30/91 (32%), Positives = 45/91 (49%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K LI I+ L+ D E +N ++ +T+ LA G + + GF S SV++ AR
Sbjct: 1 MNKKELIAAISN-TSGLSKTDSETALNAVISCLTELLAKGDSIVLPGFASLSVKEHPART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + I + V F+ G LKE +N
Sbjct: 60 GRNPSTGQPIEIAASKVVSFKTGTKLKEAIN 90
>gi|84387165|ref|ZP_00990187.1| DNA-binding protein HU-beta [Vibrio splendidus 12B01]
gi|84378026|gb|EAP94887.1| DNA-binding protein HU-beta [Vibrio splendidus 12B01]
Length = 91
Score = 96.8 bits (240), Expect = 9e-19, Method: Composition-based stats.
Identities = 36/92 (39%), Positives = 48/92 (52%), Gaps = 1/92 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS L+ IA + ++ +N L+E ++ LA G V I GFGSF V RAAR
Sbjct: 1 MNKSQLVEHIAT-SADISKDQAGSALNALVEGISNTLAKGDDVAILGFGSFKVNSRAART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P + I + P F+AGK LKE N+
Sbjct: 60 GRNPRTGEEIQISASKTPAFKAGKALKESCNA 91
>gi|298528155|ref|ZP_07015559.1| histone family protein DNA-binding protein [Desulfonatronospira
thiodismutans ASO3-1]
gi|298511807|gb|EFI35709.1| histone family protein DNA-binding protein [Desulfonatronospira
thiodismutans ASO3-1]
Length = 91
Score = 96.8 bits (240), Expect = 9e-19, Method: Composition-based stats.
Identities = 41/91 (45%), Positives = 57/91 (62%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI +A++ L+ ++ +IV + + M +AL NG RVEIRGFGSF +++
Sbjct: 1 MNKSELIKRLAEER-DLSLEEATEIVTIFFDSMKEALQNGDRVEIRGFGSFKIKEYDGYQ 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P K ++V K +PFFRAGK LKE LN
Sbjct: 60 GRNPKTGKPVNVSPKRLPFFRAGKELKEYLN 90
>gi|317968906|ref|ZP_07970296.1| DNA-binding protein HU [Synechococcus sp. CB0205]
Length = 91
Score = 96.8 bits (240), Expect = 9e-19, Method: Composition-based stats.
Identities = 31/90 (34%), Positives = 51/90 (56%), Gaps = 1/90 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ L+ +A + +L DV ++V+ ++ + ++ G +V I GFGSF R+R+AR
Sbjct: 1 MNKADLVNLVAART-ELTKTDVAQVVDAAIDTIIDSVVEGKKVSILGFGSFEPRERSARQ 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
P + I + K VP F AGK K+R+
Sbjct: 60 GLNPKTGQKIKIPAKRVPAFTAGKLFKDRV 89
>gi|332850673|ref|ZP_08432920.1| DNA-binding protein HU-beta [Acinetobacter baumannii 6013150]
gi|332867047|ref|ZP_08437344.1| DNA-binding protein HU-beta [Acinetobacter baumannii 6013113]
gi|332730510|gb|EGJ61826.1| DNA-binding protein HU-beta [Acinetobacter baumannii 6013150]
gi|332734240|gb|EGJ65369.1| DNA-binding protein HU-beta [Acinetobacter baumannii 6013113]
Length = 90
Score = 96.8 bits (240), Expect = 9e-19, Method: Composition-based stats.
Identities = 35/91 (38%), Positives = 50/91 (54%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI IA + L +N + +++ALA G V + GFG+FSV++RAAR
Sbjct: 1 MNKSELIKHIA-SSASLTQAQATAALNAVESGISKALAAGEDVALIGFGTFSVKERAART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + + + VP F+AGK LKE +
Sbjct: 60 GRNPKTGEELQIAASKVPSFKAGKALKEAVK 90
>gi|240949275|ref|ZP_04753619.1| integration host factor subunit beta [Actinobacillus minor NM305]
gi|240296391|gb|EER47035.1| integration host factor subunit beta [Actinobacillus minor NM305]
Length = 93
Score = 96.8 bits (240), Expect = 9e-19, Method: Composition-based stats.
Identities = 43/91 (47%), Positives = 59/91 (64%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI + +NP L+ VE V +LE++ +L NG R+EIRGFGSFS+ R AR+
Sbjct: 1 MTKSELIDNLFSQNPSLHLSMVEDGVKEILEKIMFSLENGERIEIRGFGSFSLHHRDARV 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + + +E K VP F+AGK LKER++
Sbjct: 61 GRNPKTGESVKLEAKSVPHFKAGKELKERVD 91
>gi|228899754|ref|ZP_04064001.1| DNA-binding protein HU [Bacillus thuringiensis IBL 4222]
gi|228912379|ref|ZP_04076069.1| DNA-binding protein HU [Bacillus thuringiensis IBL 200]
gi|228847234|gb|EEM92198.1| DNA-binding protein HU [Bacillus thuringiensis IBL 200]
gi|228859868|gb|EEN04281.1| DNA-binding protein HU [Bacillus thuringiensis IBL 4222]
Length = 90
Score = 96.8 bits (240), Expect = 9e-19, Method: Composition-based stats.
Identities = 33/91 (36%), Positives = 53/91 (58%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI +++K L ++ V +L+++TQ+L V++ GFG+F VRKR+AR
Sbjct: 1 MNKTELINQVSEKTS-LTKKEATASVQAILDQITQSLQKEESVQLIGFGTFEVRKRSART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + + + VP F+AGK LKE +
Sbjct: 60 GRNPQTGEEMHIPGGKVPGFKAGKALKEAVK 90
>gi|150020327|ref|YP_001305681.1| histone family protein DNA-binding protein [Thermosipho
melanesiensis BI429]
gi|149792848|gb|ABR30296.1| histone family protein DNA-binding protein [Thermosipho
melanesiensis BI429]
Length = 92
Score = 96.8 bits (240), Expect = 9e-19, Method: Composition-based stats.
Identities = 35/92 (38%), Positives = 58/92 (63%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K L+ +A+K P+L +D++ +++ + E ++ ALANG RV++ GFG+F VRK R
Sbjct: 1 MSKKELVNMVAEKMPELKKKDIKAVIDAVFEAISDALANGERVQLIGFGTFEVRKAEERT 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
P ++ I + + VP F+ GK LKE++N
Sbjct: 61 GVNPRTREKIKIPARKVPKFKPGKELKEKVNK 92
>gi|114330676|ref|YP_746898.1| histone family protein DNA-binding protein [Nitrosomonas eutropha
C91]
gi|114307690|gb|ABI58933.1| histone family protein DNA-binding protein [Nitrosomonas eutropha
C91]
Length = 90
Score = 96.8 bits (240), Expect = 9e-19, Method: Composition-based stats.
Identities = 32/91 (35%), Positives = 47/91 (51%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI IA ++ + + ++ L + AL+ V + GFG+F V +RAAR
Sbjct: 1 MNKSELIEAIA-RHADITKAEAGNALDGALSAIKDALSKNDSVTLVGFGTFKVGERAART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P I ++ VP F AGK LK+ +N
Sbjct: 60 GRNPRTGAEIKIKAAKVPKFTAGKALKDAVN 90
>gi|297205895|ref|ZP_06923290.1| DNA-binding protein HU [Lactobacillus jensenii JV-V16]
gi|297149021|gb|EFH29319.1| DNA-binding protein HU [Lactobacillus jensenii JV-V16]
Length = 91
Score = 96.8 bits (240), Expect = 1e-18, Method: Composition-based stats.
Identities = 33/90 (36%), Positives = 48/90 (53%), Gaps = 1/90 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ L+ +A K KL +DV V+ + + LA G +V++ GFG+F VR RAAR
Sbjct: 3 NKAELVAEVAAKT-KLTKKDVAAAVDAIFASIQDDLAKGEKVQLIGFGTFEVRNRAARKG 61
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P I + VP F+ GK LK+ +
Sbjct: 62 RNPQTGVEIEIPASKVPAFKPGKALKDAVK 91
>gi|58337267|ref|YP_193852.1| DNA-binding protein II HB [Lactobacillus acidophilus NCFM]
gi|227903852|ref|ZP_04021657.1| DNA-binding protein HU [Lactobacillus acidophilus ATCC 4796]
gi|315038200|ref|YP_004031768.1| DNA-binding protein II HB [Lactobacillus amylovorus GRL 1112]
gi|325956652|ref|YP_004292064.1| DNA-binding protein II HB [Lactobacillus acidophilus 30SC]
gi|58254584|gb|AAV42821.1| DNA-binding protein II HB [Lactobacillus acidophilus NCFM]
gi|227868739|gb|EEJ76160.1| DNA-binding protein HU [Lactobacillus acidophilus ATCC 4796]
gi|312276333|gb|ADQ58973.1| DNA-binding protein II HB [Lactobacillus amylovorus GRL 1112]
gi|323466655|gb|ADX70342.1| Integration host factor, beta subunit [Lactobacillus helveticus
H10]
gi|325333217|gb|ADZ07125.1| DNA-binding protein II HB [Lactobacillus acidophilus 30SC]
gi|327183477|gb|AEA31924.1| DNA-binding protein II HB [Lactobacillus amylovorus GRL 1118]
Length = 91
Score = 96.8 bits (240), Expect = 1e-18, Method: Composition-based stats.
Identities = 33/90 (36%), Positives = 48/90 (53%), Gaps = 1/90 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ L+ +A K KL ++V V+ + + LA G +V++ GFG+F VR RAAR
Sbjct: 3 NKAELVSEVASKT-KLTKKEVAAAVDAIFGSIQDNLAKGEKVQLIGFGTFEVRHRAARKG 61
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P I + VP F+ GK LKE +
Sbjct: 62 RNPQTGDEIEIPASEVPAFKPGKALKEAVK 91
>gi|78357101|ref|YP_388550.1| histone-like DNA-binding protein [Desulfovibrio desulfuricans
subsp. desulfuricans str. G20]
gi|78219506|gb|ABB38855.1| histone-like DNA-binding protein [Desulfovibrio desulfuricans
subsp. desulfuricans str. G20]
Length = 90
Score = 96.8 bits (240), Expect = 1e-18, Method: Composition-based stats.
Identities = 30/91 (32%), Positives = 44/91 (48%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ L+ IA+K L + E+ +N LE + L G++ + GFG+F V R R
Sbjct: 1 MTKADLVEKIAEK-ANLTKANAERSLNAFLESVEDVLVKEGKLTLTGFGTFMVETRQERQ 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P I + V FR GK LK+ +
Sbjct: 60 GRNPRTGDPIVIPAAKVVKFRPGKLLKDAVK 90
>gi|220904362|ref|YP_002479674.1| histone family protein DNA-binding protein [Desulfovibrio
desulfuricans subsp. desulfuricans str. ATCC 27774]
gi|219868661|gb|ACL48996.1| histone family protein DNA-binding protein [Desulfovibrio
desulfuricans subsp. desulfuricans str. ATCC 27774]
Length = 90
Score = 96.8 bits (240), Expect = 1e-18, Method: Composition-based stats.
Identities = 30/91 (32%), Positives = 45/91 (49%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ L+ IA K L E+ +N L + AL ++ + GFG+F+V R AR
Sbjct: 1 MTKADLVEKIAAK-ANLTKAAAERTLNAFLASVEDALVKESKLTLTGFGTFAVEHRKARQ 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P +++ + FR GK LK+ LN
Sbjct: 60 GRNPRTGDTLTIPACKIIKFRPGKILKDSLN 90
>gi|83748303|ref|ZP_00945328.1| Integration host factor alpha-subunit [Ralstonia solanacearum
UW551]
gi|83725035|gb|EAP72188.1| Integration host factor alpha-subunit [Ralstonia solanacearum
UW551]
Length = 175
Score = 96.8 bits (240), Expect = 1e-18, Method: Composition-based stats.
Identities = 23/89 (25%), Positives = 45/89 (50%), Gaps = 1/89 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ L + ++ LN ++ + +V + + +AL G V++ GFG+F +R + R
Sbjct: 76 TKAELAEMLFEQ-VGLNKRESKDMVEAFFDVIREALEQGDSVKLSGFGNFQLRDKPQRPG 134
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P ++I + + V F A + LK +
Sbjct: 135 RNPKTGEIIPITARRVVTFHASQKLKALV 163
>gi|329666305|pdb|3RHI|A Chain A, Dna-Binding Protein Hu From Bacillus Anthracis
gi|329666306|pdb|3RHI|B Chain B, Dna-Binding Protein Hu From Bacillus Anthracis
gi|329666307|pdb|3RHI|C Chain C, Dna-Binding Protein Hu From Bacillus Anthracis
gi|329666308|pdb|3RHI|D Chain D, Dna-Binding Protein Hu From Bacillus Anthracis
Length = 93
Score = 96.8 bits (240), Expect = 1e-18, Method: Composition-based stats.
Identities = 34/91 (37%), Positives = 56/91 (61%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI +A +N +++ ++ +V ++E +T LA G +V++ GFG+F VR+RAAR
Sbjct: 4 MNKTELIKNVA-QNAEISQKEATVVVQTVVESITNTLAAGEKVQLIGFGTFEVRERAART 62
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + + + VP F+AGK LKE +
Sbjct: 63 GRNPQTGEEMQIAASKVPAFKAGKELKEAVK 93
>gi|240144365|ref|ZP_04742966.1| DNA-binding protein HU [Roseburia intestinalis L1-82]
gi|257203616|gb|EEV01901.1| DNA-binding protein HU [Roseburia intestinalis L1-82]
gi|291535593|emb|CBL08705.1| Bacterial nucleoid DNA-binding protein [Roseburia intestinalis
M50/1]
gi|291540838|emb|CBL13949.1| Bacterial nucleoid DNA-binding protein [Roseburia intestinalis
XB6B4]
Length = 91
Score = 96.8 bits (240), Expect = 1e-18, Method: Composition-based stats.
Identities = 29/92 (31%), Positives = 53/92 (57%), Gaps = 1/92 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ L+ +A+K +L+ +D E + + + + L G ++++ GFG+F V +RA R
Sbjct: 1 MNKAELVAAMAEKT-ELSKKDAEAALKAFTDVVAEELKKGEKIQLVGFGTFEVSERAERT 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P + K + + P F+AGK LK+ +N+
Sbjct: 60 GRNPQSGKEMVIPASKAPKFKAGKALKDMVNA 91
>gi|311105461|ref|YP_003978314.1| integration host factor subunit alpha [Achromobacter xylosoxidans
A8]
gi|310760150|gb|ADP15599.1| integration host factor, alpha subunit [Achromobacter
xylosoxidans A8]
Length = 112
Score = 96.8 bits (240), Expect = 1e-18, Method: Composition-based stats.
Identities = 28/89 (31%), Positives = 46/89 (51%), Gaps = 1/89 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ L + ++ LN ++ + IV+ EE+ ALA G V++ GFG+F VR + R
Sbjct: 10 TKAELAELLFER-VGLNKREAKDIVDTFFEEIRDALARGDSVKLSGFGNFQVRDKPPRPG 68
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P + I + + V F A + LK +
Sbjct: 69 RNPKTGETIPIAARRVVTFHASQKLKSVV 97
>gi|292669443|ref|ZP_06602869.1| DNA-binding protein HU-beta [Selenomonas noxia ATCC 43541]
gi|292648896|gb|EFF66868.1| DNA-binding protein HU-beta [Selenomonas noxia ATCC 43541]
Length = 111
Score = 96.8 bits (240), Expect = 1e-18, Method: Composition-based stats.
Identities = 33/90 (36%), Positives = 52/90 (57%), Gaps = 1/90 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K L+ +A++ L +D EK VN + E + AL+ G ++++ GFG+F V+ R AR
Sbjct: 23 NKQELVANVAEQ-AGLTKKDAEKAVNAVFETVKGALSKGDKIQLIGFGTFEVKARKARKG 81
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P K I++ P F+AGK LK+ +N
Sbjct: 82 RNPQTGKEINIPASKNPVFKAGKALKDSVN 111
>gi|326385528|ref|ZP_08207167.1| histone-like DNA-binding protein [Novosphingobium nitrogenifigens
DSM 19370]
gi|326210067|gb|EGD60845.1| histone-like DNA-binding protein [Novosphingobium nitrogenifigens
DSM 19370]
Length = 90
Score = 96.8 bits (240), Expect = 1e-18, Method: Composition-based stats.
Identities = 34/91 (37%), Positives = 51/91 (56%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI +A + L+ D K V + + +T +LA G V + GFG+FSV KR A
Sbjct: 1 MNKNDLISAVADAS-GLSKGDATKAVEAVFDSITGSLAKGDEVRLVGFGTFSVAKRKAST 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + +S++ P F+AGK LK+ +N
Sbjct: 60 GRNPRTGEPMSIKASAQPKFKAGKGLKDAVN 90
>gi|170728675|ref|YP_001762701.1| histone family protein DNA-binding protein [Shewanella woodyi
ATCC 51908]
gi|169814022|gb|ACA88606.1| histone family protein DNA-binding protein [Shewanella woodyi
ATCC 51908]
Length = 90
Score = 96.8 bits (240), Expect = 1e-18, Method: Composition-based stats.
Identities = 33/91 (36%), Positives = 51/91 (56%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ L+ +A+ + +L + + + E +T+A+ NG ++ I GFGSF RAAR
Sbjct: 1 MNKTELVAKMAE-HAELTKAEAARALKSFEETVTEAMKNGDKISIVGFGSFETSSRAART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P K I + VP F+AGK LK+ +N
Sbjct: 60 GRNPQTGKEIQIPAATVPKFKAGKTLKDSVN 90
>gi|94312469|ref|YP_585679.1| HU family DNA-binding protein [Cupriavidus metallidurans CH34]
gi|93356321|gb|ABF10410.1| histone-like DNA-binding protein (HU) [Cupriavidus metallidurans
CH34]
Length = 92
Score = 96.8 bits (240), Expect = 1e-18, Method: Composition-based stats.
Identities = 31/92 (33%), Positives = 47/92 (51%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI IA L E+ +N+ L + A+A G + + GFG+FS +R R+
Sbjct: 1 MTKTELIDAIAAGVDGLTKAKAEQALNVTLGAIMDAVAKGETLSLIGFGTFSKGERGERM 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
AR P + I VE F+AG+ K+ +N
Sbjct: 61 ARNPRTGEEIKVEAAKTVKFKAGQKFKDAVNQ 92
>gi|91792020|ref|YP_561671.1| histone-like DNA-binding protein [Shewanella denitrificans OS217]
gi|91714022|gb|ABE53948.1| histone-like DNA-binding protein [Shewanella denitrificans OS217]
Length = 90
Score = 96.4 bits (239), Expect = 1e-18, Method: Composition-based stats.
Identities = 36/91 (39%), Positives = 49/91 (53%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI IA+ N L + + + +T+A+ NG ++ I GFGSF RAAR
Sbjct: 1 MNKSELIAKIAE-NADLTKAEAGRALKSFETAVTEAMKNGDKISIVGFGSFETTSRAART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P K I + VP F+AGK LK+ +N
Sbjct: 60 GRNPQTGKEIQIAAATVPKFKAGKTLKDSVN 90
>gi|159903915|ref|YP_001551259.1| histone-like DNA-binding protein [Prochlorococcus marinus str.
MIT 9211]
gi|159889091|gb|ABX09305.1| Bacterial histone-like DNA-binding protein [Prochlorococcus
marinus str. MIT 9211]
Length = 92
Score = 96.4 bits (239), Expect = 1e-18, Method: Composition-based stats.
Identities = 30/90 (33%), Positives = 49/90 (54%), Gaps = 1/90 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ L+ +A + +L DV +++ ++ + ++ G +V I GFGSF R R+AR
Sbjct: 1 MNKADLVNLVAART-ELTKTDVALVIDAAIDTIIDSVVEGKKVSILGFGSFEPRDRSARQ 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
P + I + K VP F AGK K+R+
Sbjct: 60 GLNPKTGEKIKIPAKRVPAFTAGKLFKDRV 89
>gi|290476984|ref|YP_003469895.1| DNA-binding protein HU-alpha [Xenorhabdus bovienii SS-2004]
gi|289176328|emb|CBJ83133.1| DNA-binding protein HU-alpha (HU-2), plays a role in DNA
replication and in rpo translation [Xenorhabdus
bovienii SS-2004]
Length = 90
Score = 96.4 bits (239), Expect = 1e-18, Method: Composition-based stats.
Identities = 31/91 (34%), Positives = 46/91 (50%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ L+ IA++ L + + L +T++L NG V++ GFG+F V RA R
Sbjct: 1 MNKTELVDAIAEQ-AGLTKTQAKTALESTLNAITESLRNGDSVQLVGFGTFKVNHRAERT 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P I + VP F AGK LK+ +
Sbjct: 60 GRNPQTGNEIKIAAANVPAFSAGKALKDAVK 90
>gi|332637851|ref|ZP_08416714.1| DNA-binding protein HU [Weissella cibaria KACC 11862]
Length = 91
Score = 96.4 bits (239), Expect = 1e-18, Method: Composition-based stats.
Identities = 29/90 (32%), Positives = 45/90 (50%), Gaps = 1/90 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K L+ +A L +D V+ + + LA G +V++ GFG+F VR RAAR
Sbjct: 3 NKQELVNDVAT-TTGLTKKDATAAVDAVFASIQDTLAKGDKVQLIGFGNFEVRTRAARKG 61
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + I + +P F+ GK LK+ +
Sbjct: 62 RNPQTGEEIEIAASKIPAFKPGKALKDAIK 91
>gi|291548185|emb|CBL21293.1| Bacterial nucleoid DNA-binding protein [Ruminococcus sp. SR1/5]
Length = 92
Score = 96.4 bits (239), Expect = 1e-18, Method: Composition-based stats.
Identities = 32/93 (34%), Positives = 55/93 (59%), Gaps = 1/93 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ L+ +A K+ L+ +DVE ++ ++ +T L G ++++ GFG+F V RAAR
Sbjct: 1 MNKTELVAAMA-KDTNLSKKDVEAVLKSFIDVVTDELKKGEKIQLVGFGTFEVSTRAARE 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSP 93
R P + +++E P F+AGK LK+ +N
Sbjct: 60 GRNPQTGETMTIEASKSPKFKAGKALKDVVNGK 92
>gi|317403230|gb|EFV83749.1| integration host factor subunit alpha [Achromobacter xylosoxidans
C54]
Length = 112
Score = 96.4 bits (239), Expect = 1e-18, Method: Composition-based stats.
Identities = 28/89 (31%), Positives = 46/89 (51%), Gaps = 1/89 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ L + ++ LN ++ + IV+ EE+ ALA G V++ GFG+F VR + R
Sbjct: 13 TKAELAELLFER-VGLNKREAKDIVDTFFEEIRDALARGDSVKLSGFGNFQVRDKPPRPG 71
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P + I + + V F A + LK +
Sbjct: 72 RNPKTGETIPIAARRVVTFHASQKLKSVV 100
>gi|304437105|ref|ZP_07397068.1| DNA-binding protein HU [Selenomonas sp. oral taxon 149 str.
67H29BP]
gi|304370056|gb|EFM23718.1| DNA-binding protein HU [Selenomonas sp. oral taxon 149 str.
67H29BP]
Length = 100
Score = 96.4 bits (239), Expect = 1e-18, Method: Composition-based stats.
Identities = 35/90 (38%), Positives = 52/90 (57%), Gaps = 1/90 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K L+ +A++ L +D EK VN L E + AL+ G ++++ GFG+F V+ RAAR
Sbjct: 12 NKQELVANVAEQ-ASLTKKDAEKAVNALFETIKGALSEGDKIQLIGFGTFEVKDRAARKG 70
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P K I + P F+AGK LK+ +N
Sbjct: 71 RNPQTGKEIEIAASRNPVFKAGKALKDAVN 100
>gi|52424240|ref|YP_087377.1| HimA protein [Mannheimia succiniciproducens MBEL55E]
gi|52306292|gb|AAU36792.1| HimA protein [Mannheimia succiniciproducens MBEL55E]
Length = 91
Score = 96.4 bits (239), Expect = 1e-18, Method: Composition-based stats.
Identities = 32/91 (35%), Positives = 48/91 (52%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI IA +LN + + + L+ +T +L G V++ GFG+F V +R AR
Sbjct: 1 MNKTDLIDAIASA-AELNKKQAKAALEATLDAITASLKAGDSVQLIGFGTFKVSERKART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P I + VP F +GK LK+ +N
Sbjct: 60 GRNPQTGAEIQIAASKVPAFVSGKALKDAVN 90
>gi|78184156|ref|YP_376591.1| histone-like DNA-binding protein [Synechococcus sp. CC9902]
gi|78213608|ref|YP_382387.1| nucleoid protein Hbs [Synechococcus sp. CC9605]
gi|116071206|ref|ZP_01468475.1| Histone-like DNA-binding protein [Synechococcus sp. BL107]
gi|260435607|ref|ZP_05789577.1| DNA-binding protein HU 1 [Synechococcus sp. WH 8109]
gi|78168450|gb|ABB25547.1| bacterial nucleoid protein Hbs [Synechococcus sp. CC9902]
gi|78198067|gb|ABB35832.1| Histone-like DNA-binding protein [Synechococcus sp. CC9605]
gi|116066611|gb|EAU72368.1| Histone-like DNA-binding protein [Synechococcus sp. BL107]
gi|260413481|gb|EEX06777.1| DNA-binding protein HU 1 [Synechococcus sp. WH 8109]
Length = 91
Score = 96.4 bits (239), Expect = 1e-18, Method: Composition-based stats.
Identities = 31/90 (34%), Positives = 51/90 (56%), Gaps = 1/90 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ L+ +A + +L DV +V+ ++ + ++ G +V I GFGSF R+R+AR
Sbjct: 1 MNKADLVNLVAART-ELTKTDVSMVVDAAIDTIIDSVVEGKKVSILGFGSFEPRERSARQ 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
P + I++ K VP F AGK K+R+
Sbjct: 60 GLNPKTGEKIAIPAKRVPAFTAGKMFKDRV 89
>gi|261250477|ref|ZP_05943052.1| DNA-binding protein HU-alpha [Vibrio orientalis CIP 102891]
gi|260939046|gb|EEX95033.1| DNA-binding protein HU-alpha [Vibrio orientalis CIP 102891]
Length = 90
Score = 96.4 bits (239), Expect = 1e-18, Method: Composition-based stats.
Identities = 35/91 (38%), Positives = 48/91 (52%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI IA+K L+ + + LE +T AL G +V++ GFG+F V RAAR
Sbjct: 1 MNKTQLIDFIAEK-ADLSKAQAKAALEATLEGVTGALKEGDQVQLIGFGTFKVNHRAART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P I + VP F AGK LK+ +
Sbjct: 60 GRNPKTGDEIQIAAANVPAFVAGKALKDAVK 90
>gi|77919056|ref|YP_356871.1| BHL, histone-like protein [Pelobacter carbinolicus DSM 2380]
gi|77545139|gb|ABA88701.1| BHL, histone-like protein [Pelobacter carbinolicus DSM 2380]
Length = 92
Score = 96.4 bits (239), Expect = 1e-18, Method: Composition-based stats.
Identities = 42/92 (45%), Positives = 59/92 (64%), Gaps = 1/92 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI +A+K L Y+ E+IVN++L+ M+ L GGR+EIRGFGS V+ A +
Sbjct: 1 MNKSELIDALAEK-KGLTYKRAEEIVNIVLDTMSDTLVEGGRIEIRGFGSLVVKDYKAYI 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P + I V+ K +PFF+ GK L+ER+N
Sbjct: 60 GRNPKTGEEIEVKPKKLPFFKVGKELRERINK 91
>gi|114564684|ref|YP_752198.1| histone family protein DNA-binding protein [Shewanella
frigidimarina NCIMB 400]
gi|114335977|gb|ABI73359.1| histone family protein DNA-binding protein [Shewanella
frigidimarina NCIMB 400]
Length = 90
Score = 96.4 bits (239), Expect = 1e-18, Method: Composition-based stats.
Identities = 37/91 (40%), Positives = 52/91 (57%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI IA+ N +L + + + E +T+A+ NG ++ I GFGSF +RAAR
Sbjct: 1 MNKSELIAKIAE-NAELTKAEAGRALKSFEEAVTEAMKNGDKISIVGFGSFETTQRAART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P K I + VP F+AGK LK+ +N
Sbjct: 60 GRNPQTGKEIQIAAATVPKFKAGKTLKDSVN 90
>gi|170718718|ref|YP_001783908.1| histone family protein DNA-binding protein [Haemophilus somnus
2336]
gi|168826847|gb|ACA32218.1| histone family protein DNA-binding protein [Haemophilus somnus
2336]
Length = 91
Score = 96.4 bits (239), Expect = 1e-18, Method: Composition-based stats.
Identities = 33/92 (35%), Positives = 47/92 (51%), Gaps = 1/92 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI IA +LN + + + L + +L G V++ GFG+F V +R AR
Sbjct: 1 MNKTDLIDAIAGA-AELNKKQAKAALEATLGAIAGSLKAGEAVQLIGFGTFKVNERKART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P I + VP F AGK LK+ +NS
Sbjct: 60 GRNPQTGAEIQIAASKVPAFVAGKALKDSVNS 91
>gi|261344361|ref|ZP_05972005.1| DNA-binding protein HU [Providencia rustigianii DSM 4541]
gi|282567632|gb|EFB73167.1| DNA-binding protein HU [Providencia rustigianii DSM 4541]
Length = 90
Score = 96.4 bits (239), Expect = 1e-18, Method: Composition-based stats.
Identities = 30/91 (32%), Positives = 45/91 (49%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ L+ IA+ L + + L ++ +L G V++ GFG+F V RAAR
Sbjct: 1 MNKTELVDAIAEST-DLTKTQAKSALEATLSAISDSLKKGEAVQLVGFGTFKVSHRAART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + I + VP F AGK LK+ +
Sbjct: 60 GRNPQTKAEIQIPATTVPAFSAGKALKDAVK 90
>gi|197302366|ref|ZP_03167423.1| hypothetical protein RUMLAC_01095 [Ruminococcus lactaris ATCC
29176]
gi|197298545|gb|EDY33088.1| hypothetical protein RUMLAC_01095 [Ruminococcus lactaris ATCC
29176]
Length = 90
Score = 96.4 bits (239), Expect = 1e-18, Method: Composition-based stats.
Identities = 30/91 (32%), Positives = 54/91 (59%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ I +A+K +++ +D EK + ++ + + L G +V++ GFG+F V +RAAR
Sbjct: 1 MNKTEFIAAVAEK-AEISKKDSEKALKAFVDVVAEQLKAGDKVQLVGFGTFEVSERAARE 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + +++ P F+AGK LK+ +N
Sbjct: 60 GRNPQTGETMTIAACKAPKFKAGKALKDAIN 90
>gi|86141624|ref|ZP_01060170.1| DNA-binding protein HU-beta (NS1) (HU-1) [Leeuwenhoekiella
blandensis MED217]
gi|85832183|gb|EAQ50638.1| DNA-binding protein HU-beta (NS1) (HU-1) [Leeuwenhoekiella
blandensis MED217]
Length = 90
Score = 96.4 bits (239), Expect = 1e-18, Method: Composition-based stats.
Identities = 34/91 (37%), Positives = 50/91 (54%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI +A+ + + +K + L + ++L G RV + GFGS+SV KRAAR
Sbjct: 1 MNKSDLIDAMAE-DAGITKAAAKKALESFLGNIEKSLKGGDRVSLVGFGSWSVSKRAARE 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P K I + K V F+AG +L + +N
Sbjct: 60 GRNPQTGKTIQIAAKNVVKFKAGSDLSDAVN 90
>gi|90413395|ref|ZP_01221388.1| putative DNA-binding protein HU-alpha [Photobacterium profundum
3TCK]
gi|90325637|gb|EAS42106.1| putative DNA-binding protein HU-alpha [Photobacterium profundum
3TCK]
Length = 90
Score = 96.4 bits (239), Expect = 1e-18, Method: Composition-based stats.
Identities = 35/91 (38%), Positives = 49/91 (53%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI IA+K L+ + + LE +T AL G +V++ GFG+F V RAAR
Sbjct: 1 MNKTQLIDLIAEK-ADLSKAQAKLALESTLEGITGALKEGDQVQLIGFGTFKVNHRAART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + I + VP F +GK LK+ L
Sbjct: 60 GRNPQTGQEIQIAAANVPAFVSGKALKDALK 90
>gi|313905493|ref|ZP_07838857.1| histone family protein DNA-binding protein [Eubacterium
cellulosolvens 6]
gi|313469677|gb|EFR65015.1| histone family protein DNA-binding protein [Eubacterium
cellulosolvens 6]
Length = 90
Score = 96.4 bits (239), Expect = 1e-18, Method: Composition-based stats.
Identities = 30/91 (32%), Positives = 50/91 (54%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI I+++ L + E+ + ++ + AL G +V++ GFG+F V +RAAR
Sbjct: 1 MNKTELIAAISEQT-DLTKKQSEEALKAFVDVVADALKKGDKVQLVGFGTFEVSERAART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + I + P F+AGK LK+ +
Sbjct: 60 GRNPRTNETIEIAASKTPKFKAGKALKDLIK 90
>gi|194291213|ref|YP_002007120.1| DNA-binding protein hu-beta, ns1 (hu-1), plays a role in DNA
replication and in rpo translation [Cupriavidus
taiwanensis LMG 19424]
gi|193225048|emb|CAQ71059.1| DNA-binding protein HU-beta, NS1 (HU-1), plays a role in DNA
replication and in rpo translation [Cupriavidus
taiwanensis LMG 19424]
Length = 92
Score = 96.4 bits (239), Expect = 1e-18, Method: Composition-based stats.
Identities = 31/92 (33%), Positives = 47/92 (51%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI IA L E+ +N+ L + A+A G + + GFG+FS +R R+
Sbjct: 1 MTKTELIDAIAAGVDGLTKAKAEQALNVTLSAIMDAVAKGDTLSLIGFGTFSKGERGERM 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
AR P + I VE F+AG+ K+ +N
Sbjct: 61 ARNPRTGEEIKVEAAKTVKFKAGQKFKDAVNQ 92
>gi|319776106|ref|YP_004138594.1| Integration host factor beta-subunit [Haemophilus influenzae
F3047]
gi|317450697|emb|CBY86917.1| Integration host factor beta-subunit [Haemophilus influenzae
F3047]
Length = 94
Score = 96.4 bits (239), Expect = 1e-18, Method: Composition-based stats.
Identities = 38/91 (41%), Positives = 58/91 (63%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS L+ ++ K P L +++E +V +LE ++Q+L G RVE+RGFGSFS+ R RL
Sbjct: 1 MTKSELMEKLSAKQPTLPAKEIENMVKDILEFISQSLEKGDRVEVRGFGSFSLHHRQPRL 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P +++ K VP+F+AGK LK ++
Sbjct: 61 GRNPKTGDSVNLSAKSVPYFKAGKELKALVD 91
>gi|125975139|ref|YP_001039049.1| nucleoid protein Hbs [Clostridium thermocellum ATCC 27405]
gi|256003205|ref|ZP_05428197.1| histone family protein DNA-binding protein [Clostridium
thermocellum DSM 2360]
gi|281418440|ref|ZP_06249459.1| histone family protein DNA-binding protein [Clostridium
thermocellum JW20]
gi|125715364|gb|ABN53856.1| bacterial nucleoid protein Hbs [Clostridium thermocellum ATCC
27405]
gi|255992896|gb|EEU02986.1| histone family protein DNA-binding protein [Clostridium
thermocellum DSM 2360]
gi|281407524|gb|EFB37783.1| histone family protein DNA-binding protein [Clostridium
thermocellum JW20]
gi|316939306|gb|ADU73340.1| histone family protein DNA-binding protein [Clostridium
thermocellum DSM 1313]
Length = 91
Score = 96.4 bits (239), Expect = 1e-18, Method: Composition-based stats.
Identities = 37/92 (40%), Positives = 59/92 (64%), Gaps = 1/92 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI ++A+K+ +L+ +D EK +N +E + +ALA G ++++ GFGSF VR+RA R
Sbjct: 1 MNKTELIASMAEKS-QLSKKDAEKALNAFIESVEEALAKGDKIQLVGFGSFEVRERAERK 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P ++ I + P F+ GK LKE +N
Sbjct: 60 GRNPQTKEEIVIPATKTPIFKVGKGLKELVNK 91
>gi|309378123|emb|CBX23232.1| DNA-binding protein HU-beta [Neisseria lactamica Y92-1009]
Length = 94
Score = 96.4 bits (239), Expect = 1e-18, Method: Composition-based stats.
Identities = 31/89 (34%), Positives = 47/89 (52%), Gaps = 1/89 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
KS LI IA++ ++ +K ++ +T AL G V + GFG+F V +RA R
Sbjct: 7 NKSELIEAIAQE-AGISKAAAQKALDATTNAVTDALKKGDTVTLVGFGTFYVGERAERQG 65
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P + +++ P FRAGK LK+ L
Sbjct: 66 RNPKTGEPLTIAAAKTPKFRAGKALKDAL 94
>gi|229008753|ref|ZP_04166148.1| DNA-binding protein HU [Bacillus mycoides Rock1-4]
gi|228752514|gb|EEM02147.1| DNA-binding protein HU [Bacillus mycoides Rock1-4]
Length = 90
Score = 96.4 bits (239), Expect = 1e-18, Method: Composition-based stats.
Identities = 34/91 (37%), Positives = 55/91 (60%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI +A K+ L+ +D V +L+++T+AL V++ GFG+F VR+R+AR
Sbjct: 1 MNKTELINQVAVKSS-LSKKDATASVQAILDQITKALQKEESVQLIGFGTFEVRERSART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + + + VP F+AGK+LKE +
Sbjct: 60 GRNPQTGEEMHIPGGKVPGFKAGKSLKEAVK 90
>gi|225375853|ref|ZP_03753074.1| hypothetical protein ROSEINA2194_01485 [Roseburia inulinivorans
DSM 16841]
gi|225212288|gb|EEG94642.1| hypothetical protein ROSEINA2194_01485 [Roseburia inulinivorans
DSM 16841]
Length = 91
Score = 96.4 bits (239), Expect = 1e-18, Method: Composition-based stats.
Identities = 29/92 (31%), Positives = 53/92 (57%), Gaps = 1/92 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ L+ +A+K +L+ +D E + + + + L G ++++ GFG+F V +RA R
Sbjct: 1 MNKAELVAAMAEK-AELSKKDAEAALKAFTDVVAEELKKGEKIQLVGFGTFEVSERAERT 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P + K + + P F+AGK LK+ +N+
Sbjct: 60 GRNPQSGKEMVIPASKAPKFKAGKALKDMVNA 91
>gi|94497483|ref|ZP_01304053.1| histone-like DNA-binding protein [Sphingomonas sp. SKA58]
gi|94423114|gb|EAT08145.1| histone-like DNA-binding protein [Sphingomonas sp. SKA58]
Length = 90
Score = 96.4 bits (239), Expect = 1e-18, Method: Composition-based stats.
Identities = 33/91 (36%), Positives = 51/91 (56%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K LI T+A+ + L+ D K V + + +T AL G V + GFG+FSV +R A
Sbjct: 1 MNKQDLISTVAE-SSGLSKNDATKAVEGVFDAITGALKKGDEVRLVGFGTFSVSQRKAST 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + ++++ P F+AGK LK+ +N
Sbjct: 60 GRNPRTGETMTIKASAQPKFKAGKGLKDSVN 90
>gi|118579779|ref|YP_901029.1| histone family protein DNA-binding protein [Pelobacter
propionicus DSM 2379]
gi|118502489|gb|ABK98971.1| histone family protein DNA-binding protein [Pelobacter
propionicus DSM 2379]
Length = 92
Score = 96.4 bits (239), Expect = 1e-18, Method: Composition-based stats.
Identities = 41/91 (45%), Positives = 61/91 (67%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI + +++ LN + E +VN + + + AL G +VEIRGFGSF++R+R R
Sbjct: 1 MTKSELIEKVVQEHAVLNMKVSEMLVNTVFDSIEDALRAGDKVEIRGFGSFTIRERTGRE 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
AR P + +V+S+ K PFF+ GK+LKER+N
Sbjct: 61 ARNPKSGEVVSIPAKKTPFFKTGKDLKERVN 91
>gi|118602049|ref|YP_908749.1| DNA-binding protein HU-beta, NS1 (HU-1) [Photobacterium damselae
subsp. piscicida]
gi|118614789|ref|YP_908572.1| DNA-binding protein HU-beta, NS1 (HU-1) [Photobacterium damselae
subsp. piscicida]
gi|134044455|ref|YP_001101716.1| DNA-binding protein HU [Yersinia ruckeri]
gi|134044925|ref|YP_001102091.1| DNA-binding protein HU [Yersinia pestis biovar Orientalis str.
IP275]
gi|134047232|ref|YP_001101901.1| DNA-binding protein HU [Salmonella enterica subsp. enterica
serovar Newport str. SL254]
gi|165937926|ref|ZP_02226486.1| DNA-binding protein HU-beta [Yersinia pestis biovar Orientalis
str. IP275]
gi|229516100|ref|ZP_04405550.1| DNA-binding protein HU-beta [Vibrio cholerae RC9]
gi|237640210|ref|YP_002891065.1| hypothetical protein peH4H_0022 [Escherichia coli]
gi|237809930|ref|YP_002894369.1| hypothetical protein pAR060302_0023 [Escherichia coli]
gi|237810119|ref|YP_002894558.1| hypothetical protein pAM04528_0022 [Salmonella enterica]
gi|300925740|ref|ZP_07141598.1| DNA-binding protein HU [Escherichia coli MS 182-1]
gi|118596880|dbj|BAF38184.1| DNA-binding protein HU-beta, NS1 (HU-1) [Photobacterium damselae
subsp. piscicida]
gi|118597058|dbj|BAF38361.1| DNA-binding protein HU-beta, NS1 (HU-1) [Photobacterium damselae
subsp. piscicida]
gi|133904818|gb|ABO40835.1| DNA-binding protein HU [Yersinia ruckeri]
gi|133905151|gb|ABO41166.1| DNA-binding protein HU [Salmonella enterica subsp. enterica
serovar Newport str. SL254]
gi|133905459|gb|ABO42221.1| DNA-binding protein HU [Yersinia pestis biovar Orientalis str.
IP275]
gi|165913949|gb|EDR32566.1| DNA-binding protein HU-beta [Yersinia pestis biovar Orientalis
str. IP275]
gi|229346880|gb|EEO11848.1| DNA-binding protein HU-beta [Vibrio cholerae RC9]
gi|229561429|gb|ACQ77632.1| conserved hypothetical protein [Escherichia coli]
gi|229561603|gb|ACQ77805.1| conserved hypothetical protein [Salmonella enterica]
gi|229561785|gb|ACQ77986.1| conserved hypothetical protein [Escherichia coli]
gi|300418162|gb|EFK01473.1| DNA-binding protein HU [Escherichia coli MS 182-1]
gi|324007578|gb|EGB76797.1| DNA-binding protein HU [Escherichia coli MS 57-2]
gi|327536459|gb|AEA95292.1| DNA-binding protein HU-beta [Salmonella enterica subsp. enterica
serovar Dublin]
gi|332144534|dbj|BAK19754.1| conserved hypothetical protein [Salmonella enterica subsp.
enterica serovar Typhimurium]
Length = 90
Score = 96.4 bits (239), Expect = 1e-18, Method: Composition-based stats.
Identities = 35/91 (38%), Positives = 53/91 (58%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI +A+ + ++ E VN L+ +T+ L GG V + GFG+F V++RAAR
Sbjct: 1 MNKSELIMKVAE-DADISKAKAEAAVNALINSVTEELKAGGTVALTGFGTFHVKERAART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + I + +P F+AGK LK+ +N
Sbjct: 60 GRNPQTGENIQIAAANIPGFKAGKGLKDSVN 90
>gi|325917703|ref|ZP_08179894.1| integration host factor, alpha subunit [Xanthomonas vesicatoria
ATCC 35937]
gi|325536097|gb|EGD07902.1| integration host factor, alpha subunit [Xanthomonas vesicatoria
ATCC 35937]
Length = 99
Score = 96.4 bits (239), Expect = 1e-18, Method: Composition-based stats.
Identities = 25/89 (28%), Positives = 47/89 (52%), Gaps = 1/89 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ + + + LN ++ ++ V+ + + AL G +V++ GFG+F +R + R
Sbjct: 4 TKAEMAERLFDE-VGLNKREAKEFVDAFFDVLRDALEQGRQVKLSGFGNFDLRPKNQRPG 62
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P + I + + V FR G+ LKER+
Sbjct: 63 RNPKTGEEIPISARTVVTFRPGQKLKERV 91
>gi|85708103|ref|ZP_01039169.1| hypothetical protein NAP1_02670 [Erythrobacter sp. NAP1]
gi|85689637|gb|EAQ29640.1| hypothetical protein NAP1_02670 [Erythrobacter sp. NAP1]
Length = 90
Score = 96.4 bits (239), Expect = 1e-18, Method: Composition-based stats.
Identities = 32/91 (35%), Positives = 51/91 (56%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI +A+ N L D V + + + +ALA+G V + GFG+F+V KR A +
Sbjct: 1 MNKNDLISAVAE-NSGLTKSDAANAVEGVFDAIQKALADGDEVRLVGFGTFAVAKRKASM 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + + ++ P F+AGK LK+ +N
Sbjct: 60 GRNPRTGEPMPIKASNQPKFKAGKGLKDAVN 90
>gi|317486543|ref|ZP_07945366.1| bacterial DNA-binding protein [Bilophila wadsworthia 3_1_6]
gi|316922218|gb|EFV43481.1| bacterial DNA-binding protein [Bilophila wadsworthia 3_1_6]
Length = 91
Score = 96.4 bits (239), Expect = 1e-18, Method: Composition-based stats.
Identities = 27/91 (29%), Positives = 43/91 (47%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ L+ I K E+ ++ + +++ +ANG +V GFGSF V +R+ R
Sbjct: 1 MTKADLVDKIHAKAGLGTKAATEQFLDAAISVLSETIANGEQVSFTGFGSFKVVERSERK 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + + V F GK LKE +
Sbjct: 61 GRNPRTGEECLIPASRVVKFTPGKALKEAVK 91
>gi|535709|gb|AAA65948.1| HU protein [Pseudomonas aeruginosa]
Length = 89
Score = 96.4 bits (239), Expect = 1e-18, Method: Composition-based stats.
Identities = 34/91 (37%), Positives = 52/91 (57%), Gaps = 2/91 (2%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI IA + + + ++ ++E +T AL G V + GFG+F+V++ AAR
Sbjct: 1 MNKSELIDAIAA-SADIPKDVAGRALDAVIESVTGALKAGDSVVLVGFGTFAVKEPAART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P K I + K +P F+AGK LK+ +N
Sbjct: 60 GRNPQTGKPIKIAAK-IPGFKAGKALKDAVN 89
>gi|291523826|emb|CBK89413.1| Bacterial nucleoid DNA-binding protein [Eubacterium rectale DSM
17629]
gi|291528706|emb|CBK94292.1| Bacterial nucleoid DNA-binding protein [Eubacterium rectale
M104/1]
Length = 90
Score = 96.4 bits (239), Expect = 1e-18, Method: Composition-based stats.
Identities = 29/91 (31%), Positives = 51/91 (56%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ L+ +A+K ++ +D E + + + + L G ++++ GFG+F V +RAAR
Sbjct: 1 MNKADLVAAMAEK-AGVSKKDAEASLKAFTDVVAEELKKGEKIQLVGFGTFEVSERAART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P +++ P F+AGK LK+ LN
Sbjct: 60 GRNPQTGAEMTIAASKAPKFKAGKALKDSLN 90
>gi|154502285|ref|ZP_02039345.1| hypothetical protein RUMGNA_00096 [Ruminococcus gnavus ATCC
29149]
gi|153797164|gb|EDN79584.1| hypothetical protein RUMGNA_00096 [Ruminococcus gnavus ATCC
29149]
Length = 92
Score = 96.4 bits (239), Expect = 1e-18, Method: Composition-based stats.
Identities = 36/92 (39%), Positives = 54/92 (58%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M +S LI TIA+K + + ++IV + L+ + AL G +V+ GFGSF VR+RA R
Sbjct: 1 MTRSDLIKTIAEKVDGVTQEKAKEIVAVTLDSIADALTAGDKVQFVGFGSFEVRERAGRT 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P I +E F+AGK LK+++N+
Sbjct: 61 GRNPQDGSEIYIEPSKNVKFKAGKELKDKVNA 92
>gi|318042379|ref|ZP_07974335.1| DNA-binding protein HU [Synechococcus sp. CB0101]
Length = 91
Score = 96.4 bits (239), Expect = 1e-18, Method: Composition-based stats.
Identities = 31/90 (34%), Positives = 50/90 (55%), Gaps = 1/90 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ L+ +A + +L DV ++V+ ++ + ++ G +V I GFGSF R+R+AR
Sbjct: 1 MNKADLVNLVAART-ELTKTDVAQVVDAAIDTIIDSVVEGKKVSILGFGSFEPRERSARQ 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
P I + K VP F AGK K+R+
Sbjct: 60 GLNPKTGDKIKIPAKRVPAFTAGKLFKDRV 89
>gi|157373740|ref|YP_001472340.1| histone family protein DNA-binding protein [Shewanella sediminis
HAW-EB3]
gi|157316114|gb|ABV35212.1| histone family protein DNA-binding protein [Shewanella sediminis
HAW-EB3]
Length = 90
Score = 96.4 bits (239), Expect = 1e-18, Method: Composition-based stats.
Identities = 35/91 (38%), Positives = 51/91 (56%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ L+ IA+ N +L + + + E +T+A+ NG ++ I GFGSF RAAR
Sbjct: 1 MNKTELVAKIAE-NAELTKAEAARALKSFEETVTEAMKNGDKISIVGFGSFETSNRAART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P K I + VP F+AGK LK+ +N
Sbjct: 60 GRNPQTGKEIQIPAATVPKFKAGKTLKDSVN 90
>gi|332971083|gb|EGK10053.1| DNA-binding protein HU [Desmospora sp. 8437]
Length = 90
Score = 96.4 bits (239), Expect = 1e-18, Method: Composition-based stats.
Identities = 41/91 (45%), Positives = 57/91 (62%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI IA+K+ + +DVE +VN LEE+T AL +G +V++ GFG+F RKR+ R
Sbjct: 1 MNKNDLIHNIAQKS-GMTKKDVETVVNGFLEEVTHALGSGEKVQLIGFGTFETRKRSGRS 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P VI + E VP F+AG LKE +
Sbjct: 60 GRNPQTGAVIEIPESTVPAFKAGTRLKEAVK 90
>gi|260779568|ref|ZP_05888458.1| DNA-binding protein HU-alpha [Vibrio coralliilyticus ATCC
BAA-450]
gi|260604377|gb|EEX30681.1| DNA-binding protein HU-alpha [Vibrio coralliilyticus ATCC
BAA-450]
Length = 90
Score = 96.4 bits (239), Expect = 1e-18, Method: Composition-based stats.
Identities = 33/91 (36%), Positives = 48/91 (52%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI IA+K L+ + + L+ +T AL G +V++ GFG+F V RAAR
Sbjct: 1 MNKTQLIDFIAEK-ADLSKAQAKAALEATLDGVTDALKEGDQVQLIGFGTFKVNHRAART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P I + VP F +GK LK+ +
Sbjct: 60 GRNPKTGDEIQIAAANVPAFVSGKALKDAVK 90
>gi|167629351|ref|YP_001679850.1| DNA-binding protein hu [Heliobacterium modesticaldum Ice1]
gi|167592091|gb|ABZ83839.1| DNA-binding protein hu [Heliobacterium modesticaldum Ice1]
Length = 91
Score = 96.4 bits (239), Expect = 1e-18, Method: Composition-based stats.
Identities = 32/90 (35%), Positives = 53/90 (58%), Gaps = 1/90 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ L+ +A+K +L +D +K VN + +AL G V++ GFG+F VR+R AR
Sbjct: 1 MNKAELVSAVAEK-AQLTEEDAKKAVNAFFAVVQEALKAGDTVQLLGFGTFKVRERTARE 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P + I ++ P F+AGK+L++ +
Sbjct: 60 GRNPQTGETIIIKASKTPTFKAGKSLRDAM 89
>gi|86157126|ref|YP_463911.1| histone-like DNA-binding protein [Anaeromyxobacter dehalogenans
2CP-C]
gi|85773637|gb|ABC80474.1| Histone-like DNA-binding protein [Anaeromyxobacter dehalogenans
2CP-C]
Length = 116
Score = 96.4 bits (239), Expect = 1e-18, Method: Composition-based stats.
Identities = 32/94 (34%), Positives = 48/94 (51%), Gaps = 1/94 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M+KS LI + K + + E + + + M AL G +EIRG G+F V+
Sbjct: 1 MLKSDLINILVVKR-GVTQKQAEATIETIFDSMKDALCKGENIEIRGLGAFHVKHYDGYQ 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSPD 94
R P +VI V+ K FR GK L++R+N P+
Sbjct: 60 GRNPKTGEVIPVKPKRGILFRTGKELRDRVNRPE 93
>gi|113953503|ref|YP_731390.1| DNA-binding protein HU [Synechococcus sp. CC9311]
gi|113880854|gb|ABI45812.1| DNA-binding protein HU [Synechococcus sp. CC9311]
Length = 91
Score = 96.0 bits (238), Expect = 1e-18, Method: Composition-based stats.
Identities = 31/90 (34%), Positives = 50/90 (55%), Gaps = 1/90 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ L+ +A + +L DV +V+ ++ + ++ G +V I GFGSF R+R+AR
Sbjct: 1 MNKADLVNLVAART-ELTKTDVSLVVDAAIDTIIDSVVEGKKVSILGFGSFEPRERSARQ 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
P + I + K VP F AGK K+R+
Sbjct: 60 GLNPKTGEKIKIPAKRVPAFTAGKMFKDRV 89
>gi|291287359|ref|YP_003504175.1| histone family protein DNA-binding protein [Denitrovibrio
acetiphilus DSM 12809]
gi|290884519|gb|ADD68219.1| histone family protein DNA-binding protein [Denitrovibrio
acetiphilus DSM 12809]
Length = 94
Score = 96.0 bits (238), Expect = 1e-18, Method: Composition-based stats.
Identities = 38/90 (42%), Positives = 55/90 (61%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI I+ +N +L + VE IVN + + AL G +VEIRGFGSF +R++ +++
Sbjct: 1 MTKSELIEVISTQNQELTKKQVEFIVNGVFSSIKDALKTGDKVEIRGFGSFKIREKNSKV 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P + V K VP+F+ GK +KE L
Sbjct: 61 GRNPKTGDKVEVPSKNVPYFKPGKEIKELL 90
>gi|238855192|ref|ZP_04645511.1| DNA-binding protein HU [Lactobacillus jensenii 269-3]
gi|260664555|ref|ZP_05865407.1| integration host factor, beta subunit [Lactobacillus jensenii
SJ-7A-US]
gi|282932514|ref|ZP_06337939.1| DNA-binding protein HU [Lactobacillus jensenii 208-1]
gi|313471979|ref|ZP_07812471.1| DNA-binding protein HU [Lactobacillus jensenii 1153]
gi|238832084|gb|EEQ24402.1| DNA-binding protein HU [Lactobacillus jensenii 269-3]
gi|239529089|gb|EEQ68090.1| DNA-binding protein HU [Lactobacillus jensenii 1153]
gi|260561620|gb|EEX27592.1| integration host factor, beta subunit [Lactobacillus jensenii
SJ-7A-US]
gi|281303463|gb|EFA95640.1| DNA-binding protein HU [Lactobacillus jensenii 208-1]
Length = 91
Score = 96.0 bits (238), Expect = 1e-18, Method: Composition-based stats.
Identities = 33/90 (36%), Positives = 49/90 (54%), Gaps = 1/90 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ L+ +A K KL +DV V+ + + + LA G +V++ GFG+F VR RAAR
Sbjct: 3 NKAELVAEVAAKT-KLTKKDVAAAVDAIFASIQEDLAKGEKVQLIGFGTFEVRNRAARKG 61
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P I + VP F+ GK LK+ +
Sbjct: 62 RNPQTGVEIEIPASKVPAFKPGKALKDAVK 91
>gi|167562961|ref|ZP_02355877.1| integration host factor subunit alpha [Burkholderia oklahomensis
EO147]
gi|167570150|ref|ZP_02363024.1| integration host factor subunit alpha [Burkholderia oklahomensis
C6786]
Length = 134
Score = 96.0 bits (238), Expect = 1e-18, Method: Composition-based stats.
Identities = 26/96 (27%), Positives = 46/96 (47%), Gaps = 1/96 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ L + + LN ++ + +V E + AL NG V++ GFG+F +R + R
Sbjct: 37 TKAELAELLFD-SVGLNKREAKDMVEAFFEVIRDALENGESVKLSGFGNFQLRDKPQRPG 95
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDSTL 97
R P + I + + V F A + LK + + D +
Sbjct: 96 RNPKTGEAIPIAARRVVTFHASQKLKALVENGDESD 131
>gi|146344069|ref|YP_001201925.1| putative DNA-binding protein HU [Pseudomonas fluorescens SBW25]
gi|146187881|emb|CAM96210.1| putative DNA-binding protein Hu [Pseudomonas fluorescens SBW25]
Length = 92
Score = 96.0 bits (238), Expect = 1e-18, Method: Composition-based stats.
Identities = 31/89 (34%), Positives = 48/89 (53%), Gaps = 1/89 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
KS + +A+K+ L D ++ V+ +LE +T L G V GFG+FSV++ A R
Sbjct: 4 NKSEFVDAVAEKS-GLTKADTQRAVDAVLETITDTLRKGDAVSFVGFGNFSVKQTAERQG 62
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P I++ P F AGK+LK+ +
Sbjct: 63 RNPSTGAPITIAAAKKPHFAAGKSLKDAI 91
>gi|220929825|ref|YP_002506734.1| histone family protein DNA-binding protein [Clostridium
cellulolyticum H10]
gi|220000153|gb|ACL76754.1| histone family protein DNA-binding protein [Clostridium
cellulolyticum H10]
Length = 91
Score = 96.0 bits (238), Expect = 1e-18, Method: Composition-based stats.
Identities = 36/91 (39%), Positives = 55/91 (60%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI +IA K+ LN ++ E +N + + + L G +V + GFG+F VR+RAAR
Sbjct: 1 MNKSDLINSIATKS-GLNKKNSEAALNAFISSVEETLKAGDKVTLVGFGTFEVRERAARK 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P ++ I++ P F+AGK LK+ +N
Sbjct: 60 GRNPQTKEEITIPASKAPVFKAGKGLKDNVN 90
>gi|303327383|ref|ZP_07357824.1| DNA-binding protein HU [Desulfovibrio sp. 3_1_syn3]
gi|302862323|gb|EFL85256.1| DNA-binding protein HU [Desulfovibrio sp. 3_1_syn3]
Length = 90
Score = 96.0 bits (238), Expect = 1e-18, Method: Composition-based stats.
Identities = 29/91 (31%), Positives = 46/91 (50%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ L+ IA K L E+ +N L + +L+ ++ + GFG+F+V R AR
Sbjct: 1 MTKADLVEKIAAK-ANLTKAAAERALNAFLASVEDSLSKEAKLTLTGFGTFAVESRKARQ 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P +++ + FR GK LK+ LN
Sbjct: 60 GRNPRTGATLTIPACKMVKFRPGKMLKDALN 90
>gi|326204212|ref|ZP_08194072.1| histone family protein DNA-binding protein [Clostridium
papyrosolvens DSM 2782]
gi|325985723|gb|EGD46559.1| histone family protein DNA-binding protein [Clostridium
papyrosolvens DSM 2782]
Length = 91
Score = 96.0 bits (238), Expect = 1e-18, Method: Composition-based stats.
Identities = 36/92 (39%), Positives = 56/92 (60%), Gaps = 1/92 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI +IA K+ LN ++ E +N + + + L G +V + GFG+F VR+RAAR
Sbjct: 1 MNKSDLINSIATKS-GLNKKNSEAALNAFISSVEETLKAGDKVTLVGFGTFEVRERAARK 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P ++ I++ P F+AGK LK+ +N+
Sbjct: 60 GRNPQTKEEITIPASKAPVFKAGKGLKDNVNA 91
>gi|197122315|ref|YP_002134266.1| integration host factor subunit alpha [Anaeromyxobacter sp. K]
gi|220917097|ref|YP_002492401.1| integration host factor, alpha subunit [Anaeromyxobacter
dehalogenans 2CP-1]
gi|226707369|sp|B4UAP1|IHFA_ANASK RecName: Full=Integration host factor subunit alpha;
Short=IHF-alpha
gi|254803509|sp|B8J836|IHFA_ANAD2 RecName: Full=Integration host factor subunit alpha;
Short=IHF-alpha
gi|196172164|gb|ACG73137.1| integration host factor, alpha subunit [Anaeromyxobacter sp. K]
gi|219954951|gb|ACL65335.1| integration host factor, alpha subunit [Anaeromyxobacter
dehalogenans 2CP-1]
Length = 113
Score = 96.0 bits (238), Expect = 1e-18, Method: Composition-based stats.
Identities = 27/93 (29%), Positives = 51/93 (54%), Gaps = 1/93 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ +I ++ +K + ++ +IV M+ + + + L G +++I GFG+F VR + +R+
Sbjct: 1 MTKADIIESVYEK-VGFSKKEAAEIVEMVFDTIKETLERGEKIKISGFGNFIVRDKKSRV 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSP 93
R P + I + + V FR + LK LN
Sbjct: 60 GRNPQTGEEIEISARRVLTFRPSQVLKNALNGE 92
>gi|160894582|ref|ZP_02075358.1| hypothetical protein CLOL250_02134 [Clostridium sp. L2-50]
gi|156863893|gb|EDO57324.1| hypothetical protein CLOL250_02134 [Clostridium sp. L2-50]
Length = 90
Score = 96.0 bits (238), Expect = 1e-18, Method: Composition-based stats.
Identities = 31/91 (34%), Positives = 53/91 (58%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ L+ +A+K +L+ +D EK + + + + L G +V++ GFG+F V +R AR
Sbjct: 1 MNKTELVAAMAEKT-ELSKKDAEKALKAFTDVVAEELKKGEKVQLVGFGTFEVAEREARE 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + +++ P F+AGK LK+ LN
Sbjct: 60 GRNPRTGETMTIAASKSPKFKAGKALKDSLN 90
>gi|37524501|ref|NP_927845.1| Na-binding protein HU-alpha (NS2) (HU-2) [Photorhabdus
luminescens subsp. laumondii TTO1]
gi|36783925|emb|CAE12787.1| NA-binding protein HU-alpha (NS2) (HU-2) [Photorhabdus
luminescens subsp. laumondii TTO1]
Length = 90
Score = 96.0 bits (238), Expect = 1e-18, Method: Composition-based stats.
Identities = 31/91 (34%), Positives = 47/91 (51%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ L+ IA+ +L + + L +T++L G V++ GFG+F V RA R
Sbjct: 1 MNKTELVDAIAEST-ELTKAQAKAALESTLNAITESLKAGDSVQLVGFGTFKVNHRAERT 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P K I++ VP F AGK LK+ +
Sbjct: 60 GRNPQTGKEITIAAANVPAFSAGKALKDAVK 90
>gi|254432410|ref|ZP_05046113.1| DNA-binding protein HU [Cyanobium sp. PCC 7001]
gi|197626863|gb|EDY39422.1| DNA-binding protein HU [Cyanobium sp. PCC 7001]
Length = 91
Score = 96.0 bits (238), Expect = 1e-18, Method: Composition-based stats.
Identities = 32/90 (35%), Positives = 51/90 (56%), Gaps = 1/90 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ L+ +A + +L DV ++V+ +E + ++ G +V I GFGSF R+R+AR
Sbjct: 1 MNKADLVNLVAART-ELTKTDVSQVVDAAIETIIDSVVEGKKVSILGFGSFEPRERSARQ 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
P + I + K VP F AGK K+R+
Sbjct: 60 GLNPKTGEKIKIPAKRVPAFTAGKMFKDRV 89
>gi|42523574|ref|NP_968954.1| DNA-binding protein HU-alpha (HU-2) [Bdellovibrio bacteriovorus
HD100]
gi|39575780|emb|CAE79947.1| DNA-binding protein HU-alpha (HU-2) [Bdellovibrio bacteriovorus
HD100]
Length = 90
Score = 96.0 bits (238), Expect = 1e-18, Method: Composition-based stats.
Identities = 32/91 (35%), Positives = 51/91 (56%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ L+ +A+K K E I++ LE + +AL +G V++ GFG+FS R AR
Sbjct: 1 MNKAQLVELVAEKT-KTTKSQSELILDATLEAIQEALKDGDEVKLVGFGTFSRSSRKARQ 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + + + +P F+ GK+LK+ LN
Sbjct: 60 GRNPKTGETVKIPSAYIPKFKPGKDLKDALN 90
>gi|300857295|ref|YP_003782279.1| putative DNA-binding protein HU [Clostridium ljungdahlii DSM
13528]
gi|300437410|gb|ADK17177.1| predicted DNA-binding protein HU [Clostridium ljungdahlii DSM
13528]
Length = 91
Score = 96.0 bits (238), Expect = 1e-18, Method: Composition-based stats.
Identities = 39/92 (42%), Positives = 57/92 (61%), Gaps = 1/92 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI IA+K+ KL +DVE + +E + + L G +V++ GFG+F RKRA R+
Sbjct: 1 MNKSELIAGIAEKS-KLTKKDVEAALKGFIESVEETLEKGDKVQLVGFGTFETRKRAERI 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P ++ I + E VP F+AGK K+R+N
Sbjct: 60 GRNPRTKEEIKIPESTVPVFKAGKEFKDRVNK 91
>gi|89072100|ref|ZP_01158696.1| DNA-binding protein HU [Photobacterium sp. SKA34]
gi|90580382|ref|ZP_01236188.1| DNA-binding protein HU [Vibrio angustum S14]
gi|89052201|gb|EAR57652.1| DNA-binding protein HU [Photobacterium sp. SKA34]
gi|90438291|gb|EAS63476.1| DNA-binding protein HU [Vibrio angustum S14]
Length = 91
Score = 96.0 bits (238), Expect = 2e-18, Method: Composition-based stats.
Identities = 33/91 (36%), Positives = 51/91 (56%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K L+ IA++ +N + +N ++E +T AL +G V + GFG+F V RAAR+
Sbjct: 1 MNKKDLVSHIAEQ-ADINKEHATAALNAIVESITSALIDGNDVSLVGFGTFKVTHRAARI 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + I + P F+AGK LK ++N
Sbjct: 60 GRNPKTGEAIQIAASKSPTFKAGKELKAQVN 90
>gi|256851012|ref|ZP_05556401.1| integration host factor, beta subunit [Lactobacillus jensenii
27-2-CHN]
gi|260661224|ref|ZP_05862138.1| integration host factor, beta subunit [Lactobacillus jensenii
115-3-CHN]
gi|282932035|ref|ZP_06337493.1| DNA-binding protein HU [Lactobacillus jensenii 208-1]
gi|256616074|gb|EEU21262.1| integration host factor, beta subunit [Lactobacillus jensenii
27-2-CHN]
gi|260548161|gb|EEX24137.1| integration host factor, beta subunit [Lactobacillus jensenii
115-3-CHN]
gi|281303802|gb|EFA95946.1| DNA-binding protein HU [Lactobacillus jensenii 208-1]
Length = 91
Score = 96.0 bits (238), Expect = 2e-18, Method: Composition-based stats.
Identities = 34/90 (37%), Positives = 49/90 (54%), Gaps = 1/90 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ L+ +A K KL +DV V+ + + Q LA G +V++ GFG+F VR RAAR
Sbjct: 3 NKAELVAEVAAKT-KLTKKDVAAAVDAIFASIQQDLAKGEKVQLIGFGTFEVRNRAARKG 61
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P I + VP F+ GK LK+ +
Sbjct: 62 RNPQTGVEIEIPASKVPAFKPGKALKDAVK 91
>gi|226227080|ref|YP_002761186.1| DNA-binding protein [Gemmatimonas aurantiaca T-27]
gi|226090271|dbj|BAH38716.1| DNA-binding protein [Gemmatimonas aurantiaca T-27]
Length = 110
Score = 96.0 bits (238), Expect = 2e-18, Method: Composition-based stats.
Identities = 26/95 (27%), Positives = 51/95 (53%), Gaps = 5/95 (5%)
Query: 1 MIKSSLIGTIAKKNPK-----LNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRK 55
M K+ L+ + + + ++ +D ++V+ L+ + +AL +E+RGFG+F +R+
Sbjct: 1 MTKADLVENVTARIAQTAGPTISKKDCARVVDAFLDAIKEALQEQKNIEVRGFGTFKIRQ 60
Query: 56 RAARLARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R R+AR P + V + VP F+ K L+ +
Sbjct: 61 RKTRMARNPRTGSPVEVSARPVPVFKPSKELRAMV 95
>gi|288575052|ref|ZP_06393409.1| histone family protein DNA-binding protein [Dethiosulfovibrio
peptidovorans DSM 11002]
gi|288570793|gb|EFC92350.1| histone family protein DNA-binding protein [Dethiosulfovibrio
peptidovorans DSM 11002]
Length = 91
Score = 96.0 bits (238), Expect = 2e-18, Method: Composition-based stats.
Identities = 38/92 (41%), Positives = 58/92 (63%), Gaps = 2/92 (2%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI +A K+ +L+ + + V+ +LE + +AL G +V++ GFG+F VR+RAAR
Sbjct: 1 MTKTELIEAVA-KSAELSKKAAGEAVSAVLESVEEALVKGEKVQLVGFGTFEVRERAART 59
Query: 61 ARAPLAQKV-ISVEEKMVPFFRAGKNLKERLN 91
R P + I + K VP FR GK LK+R+N
Sbjct: 60 GRNPQDPEKTIEIPAKKVPVFRPGKALKDRVN 91
>gi|229170488|ref|ZP_04298139.1| DNA-binding protein HU [Bacillus cereus AH621]
gi|228612958|gb|EEK70132.1| DNA-binding protein HU [Bacillus cereus AH621]
Length = 90
Score = 96.0 bits (238), Expect = 2e-18, Method: Composition-based stats.
Identities = 36/91 (39%), Positives = 53/91 (58%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ L +A+K +L +D LL+ +T ALANG +V+I GFG+F VR+R+AR
Sbjct: 1 MNKTELTKVVAEK-AELTQKDAAAATQALLDTITNALANGEKVQILGFGTFEVRERSART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + + + P F+AGK LKE +
Sbjct: 60 GRNPQTGEEMQIAASKAPAFKAGKELKEAVK 90
>gi|221067986|ref|ZP_03544091.1| histone family protein DNA-binding protein [Comamonas
testosteroni KF-1]
gi|221068049|ref|ZP_03544154.1| histone family protein DNA-binding protein [Comamonas
testosteroni KF-1]
gi|220713009|gb|EED68377.1| histone family protein DNA-binding protein [Comamonas
testosteroni KF-1]
gi|220713072|gb|EED68440.1| histone family protein DNA-binding protein [Comamonas
testosteroni KF-1]
Length = 90
Score = 96.0 bits (238), Expect = 2e-18, Method: Composition-based stats.
Identities = 33/91 (36%), Positives = 55/91 (60%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI I+ K+ +++ Q ++ ++ L+ + QAL G V+I GFG+FSV +RA R
Sbjct: 1 MNKSDLIEHIS-KSAEVSKQAADRALSATLDGIRQALKKGKVVQIIGFGTFSVGRRAGRT 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + +++ V F+ GK+LK+ +N
Sbjct: 60 GRNPRTGEKVTIAATRVAKFKPGKHLKDAVN 90
>gi|42522297|ref|NP_967677.1| DNA-binding protein HU [Bdellovibrio bacteriovorus HD100]
gi|39574828|emb|CAE78670.1| DNA-binding protein HU [Bdellovibrio bacteriovorus HD100]
Length = 97
Score = 96.0 bits (238), Expect = 2e-18, Method: Composition-based stats.
Identities = 38/91 (41%), Positives = 55/91 (60%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI I++K + E +VN + + M +AL R+EIRGFGSF R+ A
Sbjct: 1 MTKADLINLISEK-AGITRVKAETVVNTIFDSMVEALMRDDRIEIRGFGSFVNRQYGAYK 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P ++I+V+EK +PFF+ GK LKE +N
Sbjct: 60 GRNPRTGEIINVDEKKLPFFKVGKELKEDIN 90
>gi|116491040|ref|YP_810584.1| nucleoid protein Hbs [Oenococcus oeni PSU-1]
gi|290890520|ref|ZP_06553595.1| hypothetical protein AWRIB429_0985 [Oenococcus oeni AWRIB429]
gi|116091765|gb|ABJ56919.1| bacterial nucleoid protein Hbs [Oenococcus oeni PSU-1]
gi|290479916|gb|EFD88565.1| hypothetical protein AWRIB429_0985 [Oenococcus oeni AWRIB429]
Length = 91
Score = 96.0 bits (238), Expect = 2e-18, Method: Composition-based stats.
Identities = 30/90 (33%), Positives = 46/90 (51%), Gaps = 1/90 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K L+ ++AK L +D V+ + + + L G +V++ GFG+F VR RAAR
Sbjct: 3 NKQELVDSVAKAT-DLTKKDATAAVDAVFDSIASYLKKGEKVQLIGFGNFEVRDRAARTG 61
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P I + VP F+ GK LK+ +
Sbjct: 62 RNPQTGAEIKIPASKVPAFKPGKALKDTVK 91
>gi|30250139|ref|NP_842209.1| histone-like DNA-binding protein [Nitrosomonas europaea ATCC
19718]
gi|30139246|emb|CAD86119.1| Bacterial histone-like DNA-binding protein [Nitrosomonas europaea
ATCC 19718]
Length = 90
Score = 96.0 bits (238), Expect = 2e-18, Method: Composition-based stats.
Identities = 34/91 (37%), Positives = 45/91 (49%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI IA ++ L ++ L + AL V + GFG+F V KRAAR
Sbjct: 1 MNKSDLIDVIA-QSADLTKAQAGNALDGALSAIKDALGKNDSVTLVGFGTFKVGKRAART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P I ++ VP F AGK LK+ +N
Sbjct: 60 GRNPRTGAEIKIKAAKVPKFTAGKALKDAVN 90
>gi|124267145|ref|YP_001021149.1| nucleoid protein Hbs [Methylibium petroleiphilum PM1]
gi|124259920|gb|ABM94914.1| bacterial nucleoid protein Hbs [Methylibium petroleiphilum PM1]
Length = 90
Score = 96.0 bits (238), Expect = 2e-18, Method: Composition-based stats.
Identities = 35/91 (38%), Positives = 48/91 (52%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI IA K ++ + + L+ + L GG V + GFG+F+V KRAAR
Sbjct: 1 MNKTELIEHIA-KQADISKAAATRALEALIGGVRTTLKKGGSVSLVGFGTFAVTKRAARS 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P I ++ VP FR GK LK+ LN
Sbjct: 60 GRNPRTGDTIKIKAAKVPKFRPGKALKDALN 90
>gi|255524045|ref|ZP_05391007.1| histone family protein DNA-binding protein [Clostridium
carboxidivorans P7]
gi|296186901|ref|ZP_06855302.1| putative integration host factor, beta subunit [Clostridium
carboxidivorans P7]
gi|255512332|gb|EET88610.1| histone family protein DNA-binding protein [Clostridium
carboxidivorans P7]
gi|296048615|gb|EFG88048.1| putative integration host factor, beta subunit [Clostridium
carboxidivorans P7]
Length = 91
Score = 96.0 bits (238), Expect = 2e-18, Method: Composition-based stats.
Identities = 39/92 (42%), Positives = 60/92 (65%), Gaps = 1/92 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI +IA+K+ KL +DVE ++ +E + + L G +V++ GFG+F RKRAAR+
Sbjct: 1 MNKSELIASIAEKS-KLTKKDVEVVLKGFIESVEETLEKGDKVQLVGFGTFETRKRAARV 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P ++ I + E VP F+AGK K+++N
Sbjct: 60 GRNPRTKEEIEIPESTVPVFKAGKEFKDKVNK 91
>gi|33865121|ref|NP_896680.1| DNA binding protein HU [Synechococcus sp. WH 8102]
gi|33638805|emb|CAE07102.1| DNA binding protein HU [Synechococcus sp. WH 8102]
Length = 91
Score = 96.0 bits (238), Expect = 2e-18, Method: Composition-based stats.
Identities = 32/90 (35%), Positives = 51/90 (56%), Gaps = 1/90 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ L+ +A + +L DV +V+ +E + ++ G +V I GFGSF R+R+AR
Sbjct: 1 MNKADLVNLVAART-ELTKTDVSMVVDAAIETIIDSVVEGKKVSILGFGSFEPRERSARQ 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
P + I++ K VP F AGK K+R+
Sbjct: 60 GLNPKTGEKIAIPAKRVPAFTAGKMFKDRV 89
>gi|323495666|ref|ZP_08100737.1| integration host factor subunit alpha [Vibrio sinaloensis DSM
21326]
gi|323319301|gb|EGA72241.1| integration host factor subunit alpha [Vibrio sinaloensis DSM
21326]
Length = 98
Score = 96.0 bits (238), Expect = 2e-18, Method: Composition-based stats.
Identities = 27/91 (29%), Positives = 49/91 (53%), Gaps = 1/91 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ L + +K+ + +D ++ V EE+ +AL G +V++ GFG+F +R + R
Sbjct: 4 TKADLAENLFEKH-GFSKRDAKETVEAFFEEIRKALEGGEQVKLSGFGNFDLRDKNERPG 62
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P + I + + V FR G+ LK R+ +
Sbjct: 63 RNPKTGEDIPISARRVVTFRPGQKLKARVEN 93
>gi|86158392|ref|YP_465177.1| integration host factor subunit alpha [Anaeromyxobacter
dehalogenans 2CP-C]
gi|123723043|sp|Q2IJA7|IHFA_ANADE RecName: Full=Integration host factor subunit alpha;
Short=IHF-alpha
gi|85774903|gb|ABC81740.1| integration host factor, alpha subunit [Anaeromyxobacter
dehalogenans 2CP-C]
Length = 113
Score = 96.0 bits (238), Expect = 2e-18, Method: Composition-based stats.
Identities = 27/91 (29%), Positives = 51/91 (56%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ +I ++ +K + ++ +IV M+ + + + L G +++I GFG+F VR + +R+
Sbjct: 1 MTKADIIESVYEK-VGFSKKEAAEIVEMVFDTIKETLERGEKIKISGFGNFIVRDKKSRV 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + I + + V FR + LK LN
Sbjct: 60 GRNPQTGEEIEISARRVLTFRPSQVLKNALN 90
>gi|323492062|ref|ZP_08097224.1| nucleoid DNA-binding protein [Vibrio brasiliensis LMG 20546]
gi|323313623|gb|EGA66725.1| nucleoid DNA-binding protein [Vibrio brasiliensis LMG 20546]
Length = 90
Score = 96.0 bits (238), Expect = 2e-18, Method: Composition-based stats.
Identities = 35/91 (38%), Positives = 48/91 (52%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI IA+K L+ + + LE +T AL G +V++ GFG+F V RAAR
Sbjct: 1 MNKTQLIDFIAEK-ADLSKAQAKAALEATLEGVTDALKEGDQVQLIGFGTFKVNHRAART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P I + VP F AGK LK+ +
Sbjct: 60 GRNPKTGAEIQIAAANVPAFVAGKALKDSVK 90
>gi|145596669|ref|YP_001160966.1| histone family protein DNA-binding protein [Salinispora tropica
CNB-440]
gi|145306006|gb|ABP56588.1| histone family protein DNA-binding protein [Salinispora tropica
CNB-440]
Length = 91
Score = 96.0 bits (238), Expect = 2e-18, Method: Composition-based stats.
Identities = 29/90 (32%), Positives = 48/90 (53%), Gaps = 1/90 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K +L+ T+A K L E ++ ++E ++ ALA+G +V I GFG+F V+ R AR
Sbjct: 1 MNKRTLVETVAAK-AGLTKTAAESALDAMVEAISDALADGEKVAIPGFGTFEVKDRPART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P + + + + P F+ LK +
Sbjct: 60 GRNPRTGETMEIAARKAPGFKPATALKNEV 89
>gi|187478558|ref|YP_786582.1| integration host factor subunit alpha [Bordetella avium 197N]
gi|123752290|sp|Q2KZM3|IHFA_BORA1 RecName: Full=Integration host factor subunit alpha;
Short=IHF-alpha
gi|115423144|emb|CAJ49675.1| integration host factor alpha-subunit [Bordetella avium 197N]
Length = 116
Score = 96.0 bits (238), Expect = 2e-18, Method: Composition-based stats.
Identities = 28/89 (31%), Positives = 47/89 (52%), Gaps = 1/89 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ L + ++ LN ++ + IV+ EE+ +ALA G V++ GFG+F VR + R
Sbjct: 13 TKAELAELLFER-VGLNKREAKDIVDTFFEEIREALARGDSVKLSGFGNFQVRDKPPRPG 71
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P + I + + V F A + LK +
Sbjct: 72 RNPKTGETIPIAARRVVTFHASQKLKSTV 100
>gi|222055458|ref|YP_002537820.1| histone family protein DNA-binding protein [Geobacter sp. FRC-32]
gi|221564747|gb|ACM20719.1| histone family protein DNA-binding protein [Geobacter sp. FRC-32]
Length = 93
Score = 96.0 bits (238), Expect = 2e-18, Method: Composition-based stats.
Identities = 39/91 (42%), Positives = 62/91 (68%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI + + N L+ ++ E I++++ + M+ AL +G +VEIRGFGSF++R R AR
Sbjct: 1 MTKSELIDKLVEANSVLSRKESEAIISIVFDSMSDALKSGEKVEIRGFGSFTIRARDARE 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
AR P + +++ + K PFF+ GK L+ER+N
Sbjct: 61 ARNPKSGELVKIPSKKTPFFKTGKELRERVN 91
>gi|270291292|ref|ZP_06197514.1| DNA-binding protein HU-beta [Pediococcus acidilactici 7_4]
gi|304385040|ref|ZP_07367386.1| DNA-binding protein HU [Pediococcus acidilactici DSM 20284]
gi|270280138|gb|EFA25974.1| DNA-binding protein HU-beta [Pediococcus acidilactici 7_4]
gi|304329234|gb|EFL96454.1| DNA-binding protein HU [Pediococcus acidilactici DSM 20284]
Length = 91
Score = 96.0 bits (238), Expect = 2e-18, Method: Composition-based stats.
Identities = 32/90 (35%), Positives = 46/90 (51%), Gaps = 1/90 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ L+ +AKK L +D V + + L G +V++ GFG+F VR RAAR
Sbjct: 3 NKAELVENVAKKT-GLTKKDATAAVEAVFGSIQDDLKKGDKVQLIGFGTFEVRNRAARKG 61
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P K I + VP F+ GK LK+ +
Sbjct: 62 RNPQTGKEIEIAASKVPAFKPGKALKDAVK 91
>gi|261855913|ref|YP_003263196.1| integration host factor, subunit alpha [Halothiobacillus
neapolitanus c2]
gi|261836382|gb|ACX96149.1| integration host factor, alpha subunit [Halothiobacillus
neapolitanus c2]
Length = 100
Score = 96.0 bits (238), Expect = 2e-18, Method: Composition-based stats.
Identities = 28/98 (28%), Positives = 54/98 (55%), Gaps = 1/98 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ L+ + + LN ++ + V++ EE+ L +G +++ GFG+F +R + R
Sbjct: 4 TKADLVEKLHAEL-GLNKREAKDFVDIFFEELRATLESGEEIKLSGFGNFQLRDKNERPG 62
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDSTLSN 99
R P ++I V + V FRAG+ LK + + D T+++
Sbjct: 63 RNPRTGEMIPVSARRVVTFRAGQKLKAMVEAYDGTVAS 100
>gi|294787730|ref|ZP_06752974.1| integration host factor, beta subunit [Simonsiella muelleri ATCC
29453]
gi|294484023|gb|EFG31706.1| integration host factor, beta subunit [Simonsiella muelleri ATCC
29453]
Length = 101
Score = 95.6 bits (237), Expect = 2e-18, Method: Composition-based stats.
Identities = 39/97 (40%), Positives = 60/97 (61%), Gaps = 6/97 (6%)
Query: 1 MIKSSLIGTIAK------KNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVR 54
M KS L+ +A+ + +L +D+E V +L++ MT++LA G R+EIRGFGSF +
Sbjct: 1 MTKSELMTRLAEVFVEKNSDTELQTKDIEYSVKVLVDTMTRSLAKGQRIEIRGFGSFDLN 60
Query: 55 KRAARLARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R AR+ R P + + V K VP F+ GK L+ER++
Sbjct: 61 DRPARVGRNPKTGERVEVPAKRVPHFKPGKELRERVD 97
>gi|168335347|ref|ZP_02693443.1| Bacterial nucleoid DNA-binding protein [Epulopiscium sp. 'N.t.
morphotype B']
Length = 93
Score = 95.6 bits (237), Expect = 2e-18, Method: Composition-based stats.
Identities = 34/91 (37%), Positives = 55/91 (60%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ L+ ++A+K+ L +D EK + E + L +GG++++ GFG+F V R AR+
Sbjct: 1 MNKTELVASMAEKS-GLTKKDTEKALKAFEESVMDELKSGGKIQLVGFGTFEVTNRKARV 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + I + E VP F+AGK LK+ +N
Sbjct: 60 GRNPKTNEEIHIPESNVPKFKAGKALKDMVN 90
>gi|326335932|ref|ZP_08202109.1| DNA-binding protein HU [Capnocytophaga sp. oral taxon 338 str.
F0234]
gi|325691896|gb|EGD33858.1| DNA-binding protein HU [Capnocytophaga sp. oral taxon 338 str.
F0234]
Length = 90
Score = 95.6 bits (237), Expect = 2e-18, Method: Composition-based stats.
Identities = 32/91 (35%), Positives = 48/91 (52%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI IA++ L D +K + L + + L G ++ + GFGS+SV ++AAR
Sbjct: 1 MNKTELIDAIAEE-AGLTKADAKKALEAFLACVEKTLKKGDKISLVGFGSWSVAEKAARE 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P K I + K V F+AG L +N
Sbjct: 60 GRNPQTGKTIKIPAKKVVKFKAGTELSNAVN 90
>gi|320354725|ref|YP_004196064.1| histone family protein DNA-binding protein [Desulfobulbus
propionicus DSM 2032]
gi|320123227|gb|ADW18773.1| histone family protein DNA-binding protein [Desulfobulbus
propionicus DSM 2032]
Length = 92
Score = 95.6 bits (237), Expect = 2e-18, Method: Composition-based stats.
Identities = 33/90 (36%), Positives = 50/90 (55%), Gaps = 1/90 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI +IA + +++ E+ +N LL ++ A+ G RV + GFGSFSV RA R
Sbjct: 1 MNKSDLIESIA-HSAQISKIAAERGLNGLLSTLSAAITEGKRVTLVGFGSFSVVDRAPRK 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P + + + + V FR GK L ++
Sbjct: 60 GRNPKTGETVPIPPRRVVKFRPGKELAGKI 89
>gi|294666559|ref|ZP_06731800.1| histone-like protein [Xanthomonas fuscans subsp. aurantifolii str.
ICPB 10535]
gi|292603703|gb|EFF47113.1| histone-like protein [Xanthomonas fuscans subsp. aurantifolii str.
ICPB 10535]
Length = 122
Score = 95.6 bits (237), Expect = 2e-18, Method: Composition-based stats.
Identities = 30/90 (33%), Positives = 48/90 (53%), Gaps = 1/90 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI +A ++ + + V+ ++ E+T+AL G V + GFG+F VR+RA R
Sbjct: 33 MNKTELIDGVAAA-ADISKAEAGRAVDAVVSEITKALKKGDAVTLVGFGTFQVRERAERT 91
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P I + P F+AGK K+ +
Sbjct: 92 GRNPKTGDSIKIAASKNPAFKAGKAPKDAV 121
>gi|312879957|ref|ZP_07739757.1| bacterial nucleoid protein Hbs [Aminomonas paucivorans DSM 12260]
gi|310783248|gb|EFQ23646.1| bacterial nucleoid protein Hbs [Aminomonas paucivorans DSM 12260]
Length = 93
Score = 95.6 bits (237), Expect = 2e-18, Method: Composition-based stats.
Identities = 39/93 (41%), Positives = 57/93 (61%), Gaps = 1/93 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ L+ +AK L + +IV+ L E + ALA G +V++ GFG+F V++RAAR
Sbjct: 1 MTKADLVNELAKAVEDLTKKKAAEIVDALFETVQGALAKGDKVQVVGFGTFEVQRRAARQ 60
Query: 61 ARAPL-AQKVISVEEKMVPFFRAGKNLKERLNS 92
R P +K I++ K VP FRAGK LK+ +N
Sbjct: 61 GRNPQDPKKTINIPAKNVPVFRAGKALKDLVNK 93
>gi|225571163|ref|ZP_03780161.1| hypothetical protein CLOHYLEM_07251 [Clostridium hylemonae DSM
15053]
gi|225159994|gb|EEG72613.1| hypothetical protein CLOHYLEM_07251 [Clostridium hylemonae DSM
15053]
Length = 91
Score = 95.6 bits (237), Expect = 2e-18, Method: Composition-based stats.
Identities = 32/92 (34%), Positives = 55/92 (59%), Gaps = 1/92 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ L+ IA++ +L+ +D EK + ++ +T L G ++++ GFG+F V +RAAR
Sbjct: 1 MNKTELVAAIAEQ-AELSKKDSEKALKAFVDVITAELKKGEKIQLVGFGTFEVSERAARE 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P K + + P F+AGK LK+ +N+
Sbjct: 60 GRNPQTGKTMKIAACKAPKFKAGKALKDAVNA 91
>gi|332973006|gb|EGK10945.1| integration host factor beta subunit [Psychrobacter sp.
1501(2011)]
Length = 99
Score = 95.6 bits (237), Expect = 2e-18, Method: Composition-based stats.
Identities = 29/93 (31%), Positives = 54/93 (58%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
+ KS LI ++ + ++ +V+ V ++E +++ L R+E+RGFG+F + R AR
Sbjct: 5 INKSDLIQDVSARCDYISETEVDDAVREIIELLSEKLIENNRIEVRGFGTFCLHHREARQ 64
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSP 93
R P +++ V +K +P F+ GK L+E +N
Sbjct: 65 GRNPKTGEMVMVPQKSIPHFKPGKALREGVNDK 97
>gi|228918712|ref|ZP_04082132.1| DNA-binding protein HU 1 [Bacillus thuringiensis serovar
pulsiensis BGSC 4CC1]
gi|228840929|gb|EEM86151.1| DNA-binding protein HU 1 [Bacillus thuringiensis serovar
pulsiensis BGSC 4CC1]
Length = 93
Score = 95.6 bits (237), Expect = 2e-18, Method: Composition-based stats.
Identities = 36/91 (39%), Positives = 53/91 (58%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ L IA+K +L +D +L+ +T ALANG +V+I GFG+F VR+R+ R
Sbjct: 4 MNKTELTKVIAEK-AELTQKDAATATQAVLDTITNALANGDKVQILGFGTFEVRERSERT 62
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + + + VP F+AGK LKE +
Sbjct: 63 GRNPQTGEEMQIAASKVPAFKAGKELKEAVK 93
>gi|210613799|ref|ZP_03289913.1| hypothetical protein CLONEX_02124 [Clostridium nexile DSM 1787]
gi|210151008|gb|EEA82016.1| hypothetical protein CLONEX_02124 [Clostridium nexile DSM 1787]
Length = 91
Score = 95.6 bits (237), Expect = 2e-18, Method: Composition-based stats.
Identities = 32/92 (34%), Positives = 54/92 (58%), Gaps = 1/92 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ I IA+K +L+ +D EK + + + + L G ++++ GFG+F V +RAAR
Sbjct: 1 MNKTEFISAIAEK-AELSKKDAEKALKAFTDVVEEELKKGEKIQLVGFGTFEVSERAARE 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P + + +E P F+AGK LK+ +N+
Sbjct: 60 GRNPQTGETMKIEACKAPKFKAGKALKDAVNA 91
>gi|163759320|ref|ZP_02166406.1| histone-like protein [Hoeflea phototrophica DFL-43]
gi|162283724|gb|EDQ34009.1| histone-like protein [Hoeflea phototrophica DFL-43]
Length = 90
Score = 95.6 bits (237), Expect = 2e-18, Method: Composition-based stats.
Identities = 33/91 (36%), Positives = 50/91 (54%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ L+ +A+K+ ++ D V + E +T L NGG V + GFG+F+V +R A
Sbjct: 1 MNKNELVAAVAEKS-GISKGDATSAVEAVFETITGELKNGGDVRLIGFGNFTVSRREASK 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P K + + + VP F AGK LK+ N
Sbjct: 60 GRNPQTGKEVDIPARNVPKFSAGKGLKDACN 90
>gi|152976119|ref|YP_001375636.1| histone family protein DNA-binding protein [Bacillus cereus
subsp. cytotoxis NVH 391-98]
gi|152024871|gb|ABS22641.1| histone family protein DNA-binding protein [Bacillus cytotoxicus
NVH 391-98]
Length = 90
Score = 95.6 bits (237), Expect = 2e-18, Method: Composition-based stats.
Identities = 34/91 (37%), Positives = 57/91 (62%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI ++A+K +++ ++ +V ++E +T LA G +V++ GFG+F VR+RAAR
Sbjct: 1 MNKTELIKSVAQK-AEISQKEATVVVQSVVESITNTLAAGEKVQLIGFGTFEVRERAART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + + + VP F+AGK LKE +
Sbjct: 60 GRNPQTGEEMQIAASKVPAFKAGKELKEAVK 90
>gi|157963543|ref|YP_001503577.1| histone family protein DNA-binding protein [Shewanella pealeana
ATCC 700345]
gi|157848543|gb|ABV89042.1| histone family protein DNA-binding protein [Shewanella pealeana
ATCC 700345]
Length = 90
Score = 95.6 bits (237), Expect = 2e-18, Method: Composition-based stats.
Identities = 32/91 (35%), Positives = 51/91 (56%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ L+ +A+ + +L + + + E + +A+ NG ++ I GFGSF +RAAR
Sbjct: 1 MNKTELVAKMAE-SAELTKAEAARALKSFEETVAEAMKNGDKISIVGFGSFETTQRAART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P K I + VP F+AGK LK+ +N
Sbjct: 60 GRNPQTGKEIQIPAATVPKFKAGKTLKDSVN 90
>gi|260774395|ref|ZP_05883309.1| DNA-binding protein HU-alpha [Vibrio metschnikovii CIP 69.14]
gi|260610522|gb|EEX35727.1| DNA-binding protein HU-alpha [Vibrio metschnikovii CIP 69.14]
Length = 90
Score = 95.6 bits (237), Expect = 2e-18, Method: Composition-based stats.
Identities = 34/91 (37%), Positives = 47/91 (51%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI IA+K L+ + + L + AL G +V++ GFG+F V RAAR
Sbjct: 1 MNKTQLIDFIAEK-ADLSKVQAKAALEATLGAVEGALKEGDQVQLIGFGTFKVNHRAART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + I + VP F AGK LK+ L
Sbjct: 60 GRNPKTGEEIQISAANVPAFVAGKALKDSLK 90
>gi|167747374|ref|ZP_02419501.1| hypothetical protein ANACAC_02093 [Anaerostipes caccae DSM 14662]
gi|317471104|ref|ZP_07930476.1| DNA-binding protein [Anaerostipes sp. 3_2_56FAA]
gi|167653352|gb|EDR97481.1| hypothetical protein ANACAC_02093 [Anaerostipes caccae DSM 14662]
gi|316901418|gb|EFV23360.1| DNA-binding protein [Anaerostipes sp. 3_2_56FAA]
Length = 92
Score = 95.6 bits (237), Expect = 2e-18, Method: Composition-based stats.
Identities = 32/93 (34%), Positives = 55/93 (59%), Gaps = 1/93 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ L+ IA K +L+ +D EK + + + + L G ++++ GFG+F V +RAAR
Sbjct: 1 MNKTELVAAIASKT-ELSKKDAEKALKAFTDVIAEELKKGEKIQLVGFGTFEVSERAARE 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSP 93
R P + +V+++ P F+AGK LK+ +N
Sbjct: 60 GRNPRSGEVMNIPASKAPKFKAGKALKDIVNEK 92
>gi|156564019|ref|YP_001429759.1| DNA-binding HU protein [Bacillus phage 0305phi8-36]
gi|154622716|gb|ABS83596.1| DNA-binding HU protein [Bacillus phage 0305phi8-36]
Length = 111
Score = 95.6 bits (237), Expect = 2e-18, Method: Composition-based stats.
Identities = 34/91 (37%), Positives = 52/91 (57%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI +A+ +++ +D K V+ + +T ALA G +V++ GFG+F R RAAR
Sbjct: 22 MNKTELINHVAE-TAEISKKDATKAVDAVFGGITNALAEGNKVQLIGFGTFETRDRAARK 80
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + I + VP F+AGK LK +
Sbjct: 81 GRNPQTGEEIEIAATKVPAFKAGKELKTAVK 111
>gi|298529692|ref|ZP_07017095.1| histone family protein DNA-binding protein [Desulfonatronospira
thiodismutans ASO3-1]
gi|298511128|gb|EFI35031.1| histone family protein DNA-binding protein [Desulfonatronospira
thiodismutans ASO3-1]
Length = 90
Score = 95.6 bits (237), Expect = 2e-18, Method: Composition-based stats.
Identities = 30/91 (32%), Positives = 48/91 (52%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ L+ +A+K L D EK +N L+ + L G++ + GFG+F+V +R +R
Sbjct: 1 MTKADLVSKMAEK-ASLTKADSEKALNAFLDSVQDTLVKEGKLTLTGFGTFAVEERKSRN 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + I + V FR GK LK+ +
Sbjct: 60 GRNPRTGEEIKIPACKVVKFRPGKILKDAVK 90
>gi|218710870|ref|YP_002418491.1| DNA-binding protein HU-alpha [Vibrio splendidus LGP32]
gi|218323889|emb|CAV20250.1| DNA-binding protein HU-alpha [Vibrio splendidus LGP32]
Length = 110
Score = 95.6 bits (237), Expect = 2e-18, Method: Composition-based stats.
Identities = 34/91 (37%), Positives = 48/91 (52%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI IA+K L+ + + L +T AL +G +V++ GFG+F V RAAR
Sbjct: 21 MNKTQLIDFIAEK-ADLSKAQAKAALEATLGGVTDALKDGDQVQLIGFGTFKVNHRAART 79
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P I + VP F AGK LK+ +
Sbjct: 80 GRNPKTGDEIQIAAANVPAFVAGKALKDSVK 110
>gi|194476545|ref|YP_002048724.1| DNA binding protein HU [Paulinella chromatophora]
gi|171191552|gb|ACB42514.1| DNA binding protein HU [Paulinella chromatophora]
Length = 91
Score = 95.6 bits (237), Expect = 2e-18, Method: Composition-based stats.
Identities = 32/90 (35%), Positives = 50/90 (55%), Gaps = 1/90 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ L+ +A + +L DV +V+ +E + ++ G +V I GFGSF R+R+AR
Sbjct: 1 MNKADLVNLVAART-ELTKTDVSLVVDAAIETIIDSVVEGKKVSILGFGSFEPRERSARQ 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
P + I + K VP F AGK K+R+
Sbjct: 60 GLNPKTGEKIKIPAKRVPTFTAGKMFKDRV 89
>gi|21231892|ref|NP_637809.1| integration host factor subunit alpha [Xanthomonas campestris pv.
campestris str. ATCC 33913]
gi|21243319|ref|NP_642901.1| integration host factor subunit alpha [Xanthomonas axonopodis pv.
citri str. 306]
gi|58582804|ref|YP_201820.1| integration host factor subunit alpha [Xanthomonas oryzae pv.
oryzae KACC10331]
gi|66767980|ref|YP_242742.1| integration host factor subunit alpha [Xanthomonas campestris pv.
campestris str. 8004]
gi|78048345|ref|YP_364520.1| integration host factor subunit alpha [Xanthomonas campestris pv.
vesicatoria str. 85-10]
gi|84624678|ref|YP_452050.1| integration host factor subunit alpha [Xanthomonas oryzae pv.
oryzae MAFF 311018]
gi|166711594|ref|ZP_02242801.1| integration host factor subunit alpha [Xanthomonas oryzae pv.
oryzicola BLS256]
gi|188991106|ref|YP_001903116.1| integration host factor subunit alpha [Xanthomonas campestris pv.
campestris str. B100]
gi|289661755|ref|ZP_06483336.1| integration host factor subunit alpha [Xanthomonas campestris pv.
vasculorum NCPPB702]
gi|289668707|ref|ZP_06489782.1| integration host factor subunit alpha [Xanthomonas campestris pv.
musacearum NCPPB4381]
gi|325919872|ref|ZP_08181862.1| integration host factor, alpha subunit [Xanthomonas gardneri ATCC
19865]
gi|325927163|ref|ZP_08188426.1| integration host factor, alpha subunit [Xanthomonas perforans
91-118]
gi|59799768|sp|P0A0T9|IHFA_XANCP RecName: Full=Integration host factor subunit alpha;
Short=IHF-alpha
gi|59799769|sp|P0A0U0|IHFA_XANAC RecName: Full=Integration host factor subunit alpha;
Short=IHF-alpha
gi|75508131|sp|Q5GXY6|IHFA_XANOR RecName: Full=Integration host factor subunit alpha;
Short=IHF-alpha
gi|81306043|sp|Q4UW51|IHFA_XANC8 RecName: Full=Integration host factor subunit alpha;
Short=IHF-alpha
gi|123730273|sp|Q3BRU3|IHFA_XANC5 RecName: Full=Integration host factor subunit alpha;
Short=IHF-alpha
gi|123739069|sp|Q2P101|IHFA_XANOM RecName: Full=Integration host factor subunit alpha;
Short=IHF-alpha
gi|226709759|sp|B0RRH5|IHFA_XANCB RecName: Full=Integration host factor subunit alpha;
Short=IHF-alpha
gi|1172091|gb|AAA86369.1| GumA [Xanthomonas campestris]
gi|21108861|gb|AAM37437.1| integration host factor alpha subunit [Xanthomonas axonopodis pv.
citri str. 306]
gi|21113616|gb|AAM41733.1| integration host factor alpha chain [Xanthomonas campestris pv.
campestris str. ATCC 33913]
gi|58427398|gb|AAW76435.1| integration host factor alpha subunit [Xanthomonas oryzae pv.
oryzae KACC10331]
gi|66573312|gb|AAY48722.1| integration host factor alpha chain [Xanthomonas campestris pv.
campestris str. 8004]
gi|78036775|emb|CAJ24468.1| Integration host factor alpha subunit [Xanthomonas campestris pv.
vesicatoria str. 85-10]
gi|84368618|dbj|BAE69776.1| Integration host factor alpha-subunit [Xanthomonas oryzae pv.
oryzae MAFF 311018]
gi|167732866|emb|CAP51060.1| integration host factor alpha chain [Xanthomonas campestris pv.
campestris]
gi|325542476|gb|EGD13955.1| integration host factor, alpha subunit [Xanthomonas perforans
91-118]
gi|325549656|gb|EGD20520.1| integration host factor, alpha subunit [Xanthomonas gardneri ATCC
19865]
Length = 99
Score = 95.6 bits (237), Expect = 2e-18, Method: Composition-based stats.
Identities = 25/89 (28%), Positives = 48/89 (53%), Gaps = 1/89 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ + + + LN ++ ++ V+ + + AL G +V++ GFG+F +R++ R
Sbjct: 4 TKAEMAERLFDE-VGLNKREAKEFVDAFFDVLRDALEQGRQVKLSGFGNFDLRRKNQRPG 62
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P + I + + V FR G+ LKER+
Sbjct: 63 RNPKTGEEIPISARTVVTFRPGQKLKERV 91
>gi|74317692|ref|YP_315432.1| histone-like DNA-binding protein [Thiobacillus denitrificans ATCC
25259]
gi|74057187|gb|AAZ97627.1| Histone-like DNA-binding protein [Thiobacillus denitrificans ATCC
25259]
Length = 90
Score = 95.6 bits (237), Expect = 2e-18, Method: Composition-based stats.
Identities = 36/91 (39%), Positives = 49/91 (53%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI IA + ++ + + ++ + +AL G V + GFGSF V KRAAR
Sbjct: 1 MNKSELIDAIAD-SADVSKAAAGRALEATVDAVKKALKKGDIVTLVGFGSFYVGKRAARS 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P I ++ VP FRAGK LK+ LN
Sbjct: 60 GRNPRTGASIKIKAAKVPKFRAGKGLKDALN 90
>gi|296491988|ref|YP_003662455.1| DNA-binding protein HU-beta [Xenorhabdus nematophila ATCC 19061]
gi|289176875|emb|CBJ93046.1| DNA-binding protein HU-beta, NS1 (HU-1), plays a role in DNA
replication and in rpo translation [Xenorhabdus
nematophila ATCC 19061]
Length = 90
Score = 95.6 bits (237), Expect = 2e-18, Method: Composition-based stats.
Identities = 35/91 (38%), Positives = 53/91 (58%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI +A+ + ++ E VN L+ +T+ L GG V + GFG+F V++RAAR
Sbjct: 1 MNKSELIMKVAE-DADISKAKAEAAVNALINSVTEELKAGGTVALTGFGTFQVKERAART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + I + +P F+AGK LK+ +N
Sbjct: 60 GRNPQTGENIQIAAAKIPGFKAGKGLKDSVN 90
>gi|119896606|ref|YP_931819.1| DNA-binding protein HU [Azoarcus sp. BH72]
gi|119669019|emb|CAL92932.1| DNA-binding protein HU (DNA-binding protein II) [Azoarcus sp.
BH72]
Length = 91
Score = 95.6 bits (237), Expect = 2e-18, Method: Composition-based stats.
Identities = 28/92 (30%), Positives = 46/92 (50%), Gaps = 1/92 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K + +A + ++ ++ ++ +L+ +++ L G +V GFGSF V +RAAR
Sbjct: 1 MNKGEFVEALADRL-DVSRAQADRALSAVLDIISEQLGKGEKVAFTGFGSFEVSERAART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P I + VP F AG LK +N
Sbjct: 60 GRNPQTGATIDIAASSVPKFTAGATLKAAVNK 91
>gi|134104519|pdb|2IIE|A Chain A, Single Chain Integration Host Factor Protein (Scihf2) In
Complex With Dna
Length = 204
Score = 95.6 bits (237), Expect = 2e-18, Method: Composition-based stats.
Identities = 28/91 (30%), Positives = 51/91 (56%), Gaps = 1/91 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ + + K L+ +D +++V + EE+ +AL NG +V++ GFG+F +R + R
Sbjct: 48 TKAEMSEYLFDKL-GLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 106
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P + I + + V FR G+ LK R+ +
Sbjct: 107 RNPKTGEDIPITARRVVTFRPGQKLKSRVEN 137
Score = 70.2 bits (171), Expect = 1e-10, Method: Composition-based stats.
Identities = 26/52 (50%), Positives = 33/52 (63%)
Query: 40 GGRVEIRGFGSFSVRKRAARLARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
G R+EIRGFGSFS+ RA R R P + +E K VP F+ GK L++R N
Sbjct: 141 GERIEIRGFGSFSLHYRAPRTGRNPKTGDKVELEGKYVPHFKPGKELRDRAN 192
>gi|23013445|ref|ZP_00053339.1| COG0776: Bacterial nucleoid DNA-binding protein [Magnetospirillum
magnetotacticum MS-1]
Length = 90
Score = 95.6 bits (237), Expect = 2e-18, Method: Composition-based stats.
Identities = 32/90 (35%), Positives = 47/90 (52%), Gaps = 1/90 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ L+ +A L+ D K V+ + E +T AL G V + GFG+F+V RAA
Sbjct: 1 MNKNDLVTAVAGA-AGLSKADAAKAVDGVFEAITSALKGGDEVRLVGFGTFAVASRAASE 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P + I + P F+AGK LK+ +
Sbjct: 60 GRNPRTGEKIKIPASKQPKFKAGKGLKDGI 89
>gi|296284719|ref|ZP_06862717.1| histone-like protein [Citromicrobium bathyomarinum JL354]
Length = 90
Score = 95.6 bits (237), Expect = 2e-18, Method: Composition-based stats.
Identities = 35/91 (38%), Positives = 53/91 (58%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LIGT+A+ + L+ D V + + + +ALANG V + GFG+FSV KR A
Sbjct: 1 MNKNELIGTVAE-SCGLSKSDASNAVEGVFDAIQKALANGDEVRLVGFGTFSVAKRKAST 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + + ++ P F+AGK LK+ +N
Sbjct: 60 GRNPRTGEPMEIKASNQPKFKAGKGLKDAVN 90
>gi|87123689|ref|ZP_01079539.1| DNA binding protein HU [Synechococcus sp. RS9917]
gi|88807469|ref|ZP_01122981.1| DNA binding protein HU [Synechococcus sp. WH 7805]
gi|116073586|ref|ZP_01470848.1| DNA binding protein HU [Synechococcus sp. RS9916]
gi|148240264|ref|YP_001225651.1| DNA-binding protein HU [Synechococcus sp. WH 7803]
gi|86168258|gb|EAQ69515.1| DNA binding protein HU [Synechococcus sp. RS9917]
gi|88788683|gb|EAR19838.1| DNA binding protein HU [Synechococcus sp. WH 7805]
gi|116068891|gb|EAU74643.1| DNA binding protein HU [Synechococcus sp. RS9916]
gi|147848803|emb|CAK24354.1| DNA-binding protein HU [Synechococcus sp. WH 7803]
Length = 91
Score = 95.6 bits (237), Expect = 2e-18, Method: Composition-based stats.
Identities = 32/90 (35%), Positives = 50/90 (55%), Gaps = 1/90 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ L+ +A + +L DV +V+ +E + ++ G +V I GFGSF R+R+AR
Sbjct: 1 MNKADLVNLVAART-ELTKTDVSLVVDAAIETIIDSVVEGKKVSILGFGSFEPRERSARQ 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
P + I + K VP F AGK K+R+
Sbjct: 60 GLNPKTGEKIKIPAKRVPAFTAGKMFKDRV 89
>gi|197121150|ref|YP_002133101.1| histone family protein DNA-binding protein [Anaeromyxobacter sp.
K]
gi|220915851|ref|YP_002491155.1| histone family protein DNA-binding protein [Anaeromyxobacter
dehalogenans 2CP-1]
gi|196170999|gb|ACG71972.1| histone family protein DNA-binding protein [Anaeromyxobacter sp.
K]
gi|219953705|gb|ACL64089.1| histone family protein DNA-binding protein [Anaeromyxobacter
dehalogenans 2CP-1]
Length = 115
Score = 95.6 bits (237), Expect = 2e-18, Method: Composition-based stats.
Identities = 32/94 (34%), Positives = 48/94 (51%), Gaps = 1/94 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M+KS LI + K + + E + + + M AL G +EIRG G+F V+
Sbjct: 1 MLKSDLINILVVKR-GVTQKQAEATIETIFDSMKDALCKGENIEIRGLGAFHVKHYDGYQ 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSPD 94
R P +VI V+ K FR GK L++R+N P+
Sbjct: 60 GRNPKTGEVIPVKPKRGILFRTGKELRDRVNRPE 93
>gi|117617689|ref|YP_858134.1| DNA-binding protein HU-alpha [Aeromonas hydrophila subsp.
hydrophila ATCC 7966]
gi|145300512|ref|YP_001143353.1| DNA-binding protein HU alpha [Aeromonas salmonicida subsp.
salmonicida A449]
gi|7288222|gb|AAF45030.1|AF146598_1 putative DNA-binding protein HU [Aeromonas hydrophila]
gi|42768703|gb|AAS45567.1| putative DNA-binding protein HU [Aeromonas hydrophila]
gi|117559096|gb|ABK36044.1| DNA-binding protein HU-alpha [Aeromonas hydrophila subsp.
hydrophila ATCC 7966]
gi|142853284|gb|ABO91605.1| DNA-binding protein HU alpha [Aeromonas salmonicida subsp.
salmonicida A449]
Length = 98
Score = 95.6 bits (237), Expect = 2e-18, Method: Composition-based stats.
Identities = 32/91 (35%), Positives = 47/91 (51%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ L+ IA K L+ + + ++ +TQ+L G V++ GFG+F V RA R
Sbjct: 9 MNKAQLVDAIAAK-ADLSKAQAKVALEEIINGITQSLKEGDAVQLVGFGTFKVNHRAGRT 67
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P K I + VP F AGK LK+ +
Sbjct: 68 GRNPQTGKEIQIAAANVPSFVAGKALKDAVK 98
>gi|330831142|ref|YP_004394094.1| integration host factor subunit beta [Aeromonas veronii B565]
gi|328806278|gb|AEB51477.1| Integration host factor, beta subunit [Aeromonas veronii B565]
Length = 90
Score = 95.6 bits (237), Expect = 2e-18, Method: Composition-based stats.
Identities = 32/91 (35%), Positives = 47/91 (51%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ L+ IA K L+ + + ++ +TQ+L G V++ GFG+F V RA R
Sbjct: 1 MNKAQLVDAIAAK-ADLSKAQAKVALEEIINGITQSLKEGDAVQLVGFGTFKVTHRAGRT 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P K I + VP F AGK LK+ +
Sbjct: 60 GRNPQTGKEIQIAAANVPSFVAGKALKDAVK 90
>gi|113461674|ref|YP_719743.1| DNA-binding protein HU [Haemophilus somnus 129PT]
gi|112823717|gb|ABI25806.1| DNA-binding protein HU [Haemophilus somnus 129PT]
Length = 91
Score = 95.6 bits (237), Expect = 2e-18, Method: Composition-based stats.
Identities = 34/92 (36%), Positives = 49/92 (53%), Gaps = 1/92 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI IA +LN + + + LE ++ +L G V++ GFG+F V +R AR
Sbjct: 1 MNKTDLIDAIASA-AELNKKQAKAALEATLEAISGSLKAGEAVQLIGFGTFKVNERKART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P I + VP F AGK LK+ +NS
Sbjct: 60 GRNPQTGAEIQIAASKVPAFVAGKALKDSVNS 91
>gi|61658219|gb|AAX49386.1| DNA-binding protein HU [Aeromonas hydrophila]
Length = 98
Score = 95.6 bits (237), Expect = 2e-18, Method: Composition-based stats.
Identities = 33/91 (36%), Positives = 48/91 (52%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ L+ IA K L+ + + ++ +TQ+L GG V++ GFG+F V RA R
Sbjct: 9 MNKAQLVDAIAAK-ADLSKAQAKVALEEIINGITQSLKEGGAVQLVGFGTFKVNHRAGRT 67
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P K I + VP F AGK LK+ +
Sbjct: 68 GRNPQTGKEIQIAAANVPSFVAGKALKDAVK 98
>gi|187478614|ref|YP_786638.1| DNA-binding protein Hu-beta [Bordetella avium 197N]
gi|115423200|emb|CAJ49731.1| DNA-binding protein Hu-beta [Bordetella avium 197N]
Length = 90
Score = 95.6 bits (237), Expect = 2e-18, Method: Composition-based stats.
Identities = 33/91 (36%), Positives = 50/91 (54%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI IA K ++ + ++ L+ + L GG V + GFG+F+V RAAR
Sbjct: 1 MNKTELIDHIASK-ADISKAAAGRTLDALIGAVKTTLKKGGTVTLVGFGTFAVSSRAART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + I +++ VP FR GK LK+ +N
Sbjct: 60 GRNPRTGETIKIKKAKVPKFRPGKALKDAVN 90
>gi|116492840|ref|YP_804575.1| nucleoid protein Hbs [Pediococcus pentosaceus ATCC 25745]
gi|116102990|gb|ABJ68133.1| bacterial nucleoid protein Hbs [Pediococcus pentosaceus ATCC
25745]
Length = 91
Score = 95.6 bits (237), Expect = 2e-18, Method: Composition-based stats.
Identities = 31/90 (34%), Positives = 46/90 (51%), Gaps = 1/90 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ L+ +A K L +D V+ + + L G +V++ GFG+F VR RAAR
Sbjct: 3 NKAELVDNVA-KVTGLTKKDATAAVDAVFSSIQDDLKKGEKVQLIGFGTFEVRNRAARKG 61
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P K I + VP F+ GK LK+ +
Sbjct: 62 RNPQTGKEIEIAASKVPAFKPGKALKDAVK 91
>gi|329906686|ref|ZP_08274482.1| Integration host factor beta subunit [Oxalobacteraceae bacterium
IMCC9480]
gi|327547181|gb|EGF32042.1| Integration host factor beta subunit [Oxalobacteraceae bacterium
IMCC9480]
Length = 92
Score = 95.6 bits (237), Expect = 2e-18, Method: Composition-based stats.
Identities = 36/83 (43%), Positives = 55/83 (66%)
Query: 10 IAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLARAPLAQKV 69
+A++ P+L +D + V +L+ M ALA G R+EIRGFGSFS+ R R+ R P + +
Sbjct: 1 MAERYPQLVAKDADYAVKTILDAMIDALATGQRIEIRGFGSFSLNSRPPRIGRNPKSGEK 60
Query: 70 ISVEEKMVPFFRAGKNLKERLNS 92
+ V EK VP F+ GK L+ER+++
Sbjct: 61 VMVPEKRVPHFKPGKELRERVDA 83
>gi|332981382|ref|YP_004462823.1| nucleoid protein Hbs [Mahella australiensis 50-1 BON]
gi|332699060|gb|AEE96001.1| bacterial nucleoid protein Hbs [Mahella australiensis 50-1 BON]
Length = 91
Score = 95.6 bits (237), Expect = 2e-18, Method: Composition-based stats.
Identities = 36/91 (39%), Positives = 55/91 (60%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI +A+K ++ +D EK +N ++ +T+AL NG V++ GFG+F V R+AR
Sbjct: 1 MNKAELIAKMAEK-GEMTKKDAEKALNAFVDAVTEALVNGDTVQLVGFGTFRVSPRSARK 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P QK I + P F+AGK LK+ +
Sbjct: 60 GRDPQTQKEIMIPASKAPVFKAGKALKDAVK 90
>gi|226324137|ref|ZP_03799655.1| hypothetical protein COPCOM_01915 [Coprococcus comes ATCC 27758]
gi|225207686|gb|EEG90040.1| hypothetical protein COPCOM_01915 [Coprococcus comes ATCC 27758]
Length = 91
Score = 95.6 bits (237), Expect = 2e-18, Method: Composition-based stats.
Identities = 31/92 (33%), Positives = 57/92 (61%), Gaps = 1/92 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ L+ +A++ ++ +D EK++ ++ +T+ + G +V++ GFG+F V +RAAR
Sbjct: 1 MNKTELVAAVAEQ-ADISKKDAEKVLKAFVDVVTEEMKKGEKVQLVGFGTFEVSERAARE 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P K + +E P F+AGK LK+ +N+
Sbjct: 60 GRNPQTGKTMKIEACKAPKFKAGKALKDAVNA 91
>gi|322507540|gb|ADX02994.1| Putative bacterial nucleoid DNA-binding protein [Acinetobacter
baumannii 1656-2]
Length = 94
Score = 95.6 bits (237), Expect = 2e-18, Method: Composition-based stats.
Identities = 33/90 (36%), Positives = 50/90 (55%), Gaps = 1/90 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K + TIAKK ++ E+ +N + +LA+G +V + GFG+F+V+ RAAR
Sbjct: 5 TKKHIAETIAKK-VGISKSQAEEALNTFESIIQGSLADGDQVTLVGFGTFAVKDRAARKG 63
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + I + VP F+ GK LKE +N
Sbjct: 64 RNPKTGEEIQIAATKVPTFKPGKALKEAVN 93
>gi|78356842|ref|YP_388291.1| histone-like DNA-binding protein [Desulfovibrio desulfuricans
subsp. desulfuricans str. G20]
gi|78219247|gb|ABB38596.1| histone-like DNA-binding protein [Desulfovibrio desulfuricans
subsp. desulfuricans str. G20]
Length = 91
Score = 95.6 bits (237), Expect = 2e-18, Method: Composition-based stats.
Identities = 39/91 (42%), Positives = 58/91 (63%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI ++++N ++ ++ +V ++ M ALA G RVEIRGFGSF V++
Sbjct: 1 MNKSELIKVLSEEN-NISIEEATLVVTTFVDSMKDALAEGDRVEIRGFGSFKVKQYEGYS 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P ++++V+ K +PFFRAGK LKE LN
Sbjct: 60 GRNPKTGEIVNVQPKQLPFFRAGKELKEFLN 90
>gi|319787633|ref|YP_004147108.1| histone family protein DNA-binding protein [Pseudoxanthomonas
suwonensis 11-1]
gi|317466145|gb|ADV27877.1| histone family protein DNA-binding protein [Pseudoxanthomonas
suwonensis 11-1]
Length = 90
Score = 95.2 bits (236), Expect = 2e-18, Method: Composition-based stats.
Identities = 33/91 (36%), Positives = 53/91 (58%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI +A + ++ + + V+ ++ +T+AL G V + GFG+F VRKRAAR
Sbjct: 1 MNKTDLIDAVASE-AEITKAEASRAVDAVVNSVTKALKKGDAVTLVGFGTFQVRKRAART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + I ++ P F+AGK LK+ +N
Sbjct: 60 GRNPKTGETIKIKASKNPAFKAGKALKDAVN 90
>gi|218887884|ref|YP_002437205.1| histone family protein DNA-binding protein [Desulfovibrio
vulgaris str. 'Miyazaki F']
gi|218758838|gb|ACL09737.1| histone family protein DNA-binding protein [Desulfovibrio
vulgaris str. 'Miyazaki F']
Length = 91
Score = 95.2 bits (236), Expect = 2e-18, Method: Composition-based stats.
Identities = 30/91 (32%), Positives = 43/91 (47%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ L+ I K + E ++ + + ALA G V GFGSF V +RAAR
Sbjct: 1 MTKAELVEKIRAKAGLASKVQAEGALDATIAVLADALAAGESVTFTGFGSFKVTERAARK 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + I++ V F GK LK+ +
Sbjct: 61 GRNPRTGEEITIPSGKVVKFTPGKLLKDSVK 91
>gi|49073542|gb|AAT49327.1| PA5348 [synthetic construct]
Length = 91
Score = 95.2 bits (236), Expect = 2e-18, Method: Composition-based stats.
Identities = 29/91 (31%), Positives = 47/91 (51%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K L IA+K L + +++N LL+E+T AL V + GFG+F R R AR
Sbjct: 1 MRKPELAAAIAEK-ADLTKEQANRVLNALLDEITGALNRKDSVTLVGFGTFLQRHRGART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
+ P + + ++ F+ GK L++ +N
Sbjct: 60 GKNPQTGQPVKIKASNTVAFKPGKALRDAVN 90
>gi|220905203|ref|YP_002480515.1| histone family protein DNA-binding protein [Desulfovibrio
desulfuricans subsp. desulfuricans str. ATCC 27774]
gi|219869502|gb|ACL49837.1| histone family protein DNA-binding protein [Desulfovibrio
desulfuricans subsp. desulfuricans str. ATCC 27774]
Length = 91
Score = 95.2 bits (236), Expect = 2e-18, Method: Composition-based stats.
Identities = 37/92 (40%), Positives = 53/92 (57%), Gaps = 1/92 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI +A + + + D +VN + M Q+L G R+EIRGFGSF +++
Sbjct: 1 MNKSELIKALADET-NIPFDDASMVVNTFFDAMKQSLLAGERIEIRGFGSFKIKEYEGYA 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P + ++V K +PFFRAGK LKE +N
Sbjct: 60 GRNPKTGESVTVASKRLPFFRAGKELKEFINQ 91
>gi|207742952|ref|YP_002259344.1| integration host factor alpha-subunit (ihf-alpha) protein
[Ralstonia solanacearum IPO1609]
gi|206594347|emb|CAQ61274.1| probable integration host factor alpha-subunit (ihf-alpha) protein
[Ralstonia solanacearum IPO1609]
Length = 140
Score = 95.2 bits (236), Expect = 2e-18, Method: Composition-based stats.
Identities = 23/89 (25%), Positives = 45/89 (50%), Gaps = 1/89 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ L + ++ LN ++ + +V + + +AL G V++ GFG+F +R + R
Sbjct: 41 TKAELAEMLFEQ-VGLNKRESKDMVEAFFDVIREALEQGDSVKLSGFGNFQLRDKPQRPG 99
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P ++I + + V F A + LK +
Sbjct: 100 RNPKTGEIIPITARRVVTFHASQKLKALV 128
>gi|108759553|ref|YP_633781.1| integration host factor subunit beta [Myxococcus xanthus DK 1622]
gi|108463433|gb|ABF88618.1| integration host factor, beta subunit [Myxococcus xanthus DK 1622]
Length = 117
Score = 95.2 bits (236), Expect = 2e-18, Method: Composition-based stats.
Identities = 33/100 (33%), Positives = 49/100 (49%), Gaps = 1/100 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M+KS LI + K + + E + + E M AL G +EIRG G+F V+
Sbjct: 1 MLKSDLINILVAKR-GVTQKQAEATIETIFESMKDALCRGENIEIRGLGAFHVKNYQGYQ 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDSTLSNS 100
R P +VI V+ K FR GK L++R+N P + +
Sbjct: 60 GRNPKTGQVIPVKPKRGLLFRTGKELRDRVNRPAPQQAQT 99
>gi|33863662|ref|NP_895222.1| histone-like DNA-binding protein [Prochlorococcus marinus str.
MIT 9313]
gi|124022281|ref|YP_001016588.1| histone-like DNA-binding protein [Prochlorococcus marinus str.
MIT 9303]
gi|33635245|emb|CAE21570.1| Bacterial DNA-binding protein [Prochlorococcus marinus str. MIT
9313]
gi|123962567|gb|ABM77323.1| Bacterial histone-like DNA-binding protein [Prochlorococcus
marinus str. MIT 9303]
Length = 91
Score = 95.2 bits (236), Expect = 2e-18, Method: Composition-based stats.
Identities = 31/90 (34%), Positives = 49/90 (54%), Gaps = 1/90 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ L+ +A + +L DV +V+ ++ + ++ G +V I GFGSF R R+AR
Sbjct: 1 MNKADLVNLVAART-ELTKTDVSLVVDAAIDTIIDSVVEGKKVSILGFGSFEPRDRSARQ 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
P + I + K VP F AGK K+R+
Sbjct: 60 GLNPKTGQKIKIPAKRVPAFTAGKMFKDRV 89
>gi|194098875|ref|YP_002001939.1| integration host factor subunit beta [Neisseria gonorrhoeae
NCCP11945]
gi|240115896|ref|ZP_04729958.1| integration host factor subunit beta [Neisseria gonorrhoeae
PID18]
gi|260440289|ref|ZP_05794105.1| integration host factor subunit beta [Neisseria gonorrhoeae DGI2]
gi|193934165|gb|ACF29989.1| integration host factor beta-subunit [Neisseria gonorrhoeae
NCCP11945]
Length = 92
Score = 95.2 bits (236), Expect = 2e-18, Method: Composition-based stats.
Identities = 41/92 (44%), Positives = 58/92 (63%), Gaps = 3/92 (3%)
Query: 1 MIKSSLIGTIAKKNP-KLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAAR 59
M++ L A KN L +DVE V +L++ MT++LA G R+EIRGFGSF + R AR
Sbjct: 1 MVR--LAEVFAAKNGTHLLAKDVEYSVKVLVDTMTRSLARGQRIEIRGFGSFDLNHRPAR 58
Query: 60 LARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
+ R P + + V EK VP F+ GK L+ER++
Sbjct: 59 IGRNPKTGERVEVPEKHVPHFKPGKELRERVD 90
>gi|167855819|ref|ZP_02478571.1| DNA-binding protein HU [Haemophilus parasuis 29755]
gi|219871002|ref|YP_002475377.1| DNA-binding protein HU/transcriptional regulator [Haemophilus
parasuis SH0165]
gi|167853032|gb|EDS24294.1| DNA-binding protein HU [Haemophilus parasuis 29755]
gi|219691206|gb|ACL32429.1| DNA-binding protein HU/transcriptional regulator [Haemophilus
parasuis SH0165]
Length = 90
Score = 95.2 bits (236), Expect = 2e-18, Method: Composition-based stats.
Identities = 30/91 (32%), Positives = 47/91 (51%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ L+ IA L+ +D + + L ++++L G V++ GFG+F V R AR
Sbjct: 1 MNKTELVDAIAA-GADLSKKDAKAALEATLNAISESLKKGDSVQLIGFGTFKVNHRKART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + I + VP F AGK LK+ +
Sbjct: 60 GRNPKTNEAIEIPAANVPAFVAGKALKDLVK 90
>gi|256828814|ref|YP_003157542.1| histone family protein DNA-binding protein [Desulfomicrobium
baculatum DSM 4028]
gi|256577990|gb|ACU89126.1| histone family protein DNA-binding protein [Desulfomicrobium
baculatum DSM 4028]
Length = 91
Score = 95.2 bits (236), Expect = 2e-18, Method: Composition-based stats.
Identities = 36/91 (39%), Positives = 55/91 (60%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI ++A+K K++ + IV+ + M AL G R+EIRGFGSF +++ +
Sbjct: 1 MNKSELIQSLAEKI-KISNDEASTIVDSFFDSMRDALLRGDRIEIRGFGSFKIKQYEGYI 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + + V+ K +PFF+AGK L + LN
Sbjct: 60 GRNPKTGESVQVKPKKMPFFKAGKGLLDYLN 90
>gi|55821216|ref|YP_139658.1| histone-like DNA-binding protein [Streptococcus thermophilus LMG
18311]
gi|55823128|ref|YP_141569.1| histone-like DNA-binding protein [Streptococcus thermophilus
CNRZ1066]
gi|116627943|ref|YP_820562.1| histone-like DNA-binding protein [Streptococcus thermophilus
LMD-9]
gi|3334160|sp|P96045|DBH_STRTR RecName: Full=DNA-binding protein HU
gi|1850896|emb|CAA72098.1| hsth [Streptococcus thermophilus]
gi|55737201|gb|AAV60843.1| histone-like DNA-binding protein [Streptococcus thermophilus LMG
18311]
gi|55739113|gb|AAV62754.1| histone-like DNA-binding protein [Streptococcus thermophilus
CNRZ1066]
gi|116101220|gb|ABJ66366.1| bacterial nucleoid protein Hbs [Streptococcus thermophilus LMD-9]
gi|312278530|gb|ADQ63187.1| Histone-like DNA binding protein [Streptococcus thermophilus
ND03]
Length = 91
Score = 95.2 bits (236), Expect = 2e-18, Method: Composition-based stats.
Identities = 33/90 (36%), Positives = 51/90 (56%), Gaps = 1/90 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K LI +A+ +L +D V+ + + + LA G +V++ GFG+F VR+RAAR
Sbjct: 3 NKQDLIAKVAEAT-ELTKKDSAAAVDAVFASIEEFLAAGEKVQLIGFGNFEVRERAARQG 61
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + IS+ VP F+AGK LK+ +
Sbjct: 62 RNPQTGETISIAASKVPAFKAGKALKDAVK 91
>gi|326943503|gb|AEA19396.1| DNA-binding protein HU [Bacillus thuringiensis serovar chinensis
CT-43]
Length = 90
Score = 95.2 bits (236), Expect = 3e-18, Method: Composition-based stats.
Identities = 36/91 (39%), Positives = 53/91 (58%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ L IA+K +L +D +L+ +T ALANG +V+I GFG+F VR+R+AR
Sbjct: 1 MNKTELTKVIAEK-AELTQKDAAAATQAVLDTITNALANGEKVQILGFGTFEVRERSART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + + + P F+AGK LKE +
Sbjct: 60 GRNPQTGEEMQIAASKAPAFKAGKELKEAVK 90
>gi|126701120|ref|YP_001090017.1| DNA-binding protein HU [Clostridium difficile 630]
gi|254977121|ref|ZP_05273593.1| DNA-binding protein HU [Clostridium difficile QCD-66c26]
gi|255094450|ref|ZP_05323928.1| DNA-binding protein HU [Clostridium difficile CIP 107932]
gi|255102706|ref|ZP_05331683.1| DNA-binding protein HU [Clostridium difficile QCD-63q42]
gi|255308527|ref|ZP_05352698.1| DNA-binding protein HU [Clostridium difficile ATCC 43255]
gi|255316201|ref|ZP_05357784.1| DNA-binding protein HU [Clostridium difficile QCD-76w55]
gi|255518863|ref|ZP_05386539.1| DNA-binding protein HU [Clostridium difficile QCD-97b34]
gi|255652042|ref|ZP_05398944.1| DNA-binding protein HU [Clostridium difficile QCD-37x79]
gi|255657453|ref|ZP_05402862.1| DNA-binding protein HU [Clostridium difficile QCD-23m63]
gi|260685016|ref|YP_003216301.1| DNA-binding protein HU [Clostridium difficile CD196]
gi|260688674|ref|YP_003219808.1| DNA-binding protein HU [Clostridium difficile R20291]
gi|296449048|ref|ZP_06890838.1| DNA-binding protein HU [Clostridium difficile NAP08]
gi|296879871|ref|ZP_06903844.1| DNA-binding protein HU [Clostridium difficile NAP07]
gi|115252557|emb|CAJ70400.1| Non-specific DNA-binding protein HBsu; signal recognition
particle-like (SRP) component [Clostridium difficile]
gi|260211179|emb|CBA66647.1| DNA-binding protein HU [Clostridium difficile CD196]
gi|260214691|emb|CBE07338.1| DNA-binding protein HU [Clostridium difficile R20291]
gi|296262141|gb|EFH08946.1| DNA-binding protein HU [Clostridium difficile NAP08]
gi|296429160|gb|EFH15034.1| DNA-binding protein HU [Clostridium difficile NAP07]
Length = 92
Score = 95.2 bits (236), Expect = 3e-18, Method: Composition-based stats.
Identities = 32/92 (34%), Positives = 52/92 (56%), Gaps = 2/92 (2%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ L+ +A+K+ L ++ E +N + + AL N +V++ GFG+F R+RAAR
Sbjct: 1 MNKAELVSKMAEKS-GLTKKEAEAALNAFMSSVQDALVNNEKVQLVGFGTFETRERAARQ 59
Query: 61 ARAPLAQKV-ISVEEKMVPFFRAGKNLKERLN 91
R P + I + P F+AGK LK+ +N
Sbjct: 60 GRNPRDPEQVIDIPASKAPVFKAGKGLKDIIN 91
>gi|238018754|ref|ZP_04599180.1| hypothetical protein VEIDISOL_00612 [Veillonella dispar ATCC
17748]
gi|237864520|gb|EEP65810.1| hypothetical protein VEIDISOL_00612 [Veillonella dispar ATCC
17748]
Length = 99
Score = 95.2 bits (236), Expect = 3e-18, Method: Composition-based stats.
Identities = 39/91 (42%), Positives = 59/91 (64%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI ++A+K +L +D EK V + + + + LA GG+V++ GFG+F VR+RAAR
Sbjct: 1 MNKTELIASVAQKT-ELTKKDAEKAVKAVFDTVAEELAAGGKVQVIGFGTFEVRERAARE 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P K I++ P F+AGK LKE++N
Sbjct: 60 GRNPQNGKTITIAASKSPAFKAGKGLKEQVN 90
>gi|226946415|ref|YP_002801488.1| histone-like DNA-binding protein [Azotobacter vinelandii DJ]
gi|226721342|gb|ACO80513.1| histone-like bacterial DNA-binding protein, hupB family
[Azotobacter vinelandii DJ]
Length = 90
Score = 95.2 bits (236), Expect = 3e-18, Method: Composition-based stats.
Identities = 39/91 (42%), Positives = 53/91 (58%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI +++ + L+ K+VN LLE +T L G V + GFG+FSV++RAAR
Sbjct: 1 MNKSELIASVST-HADLDKNTATKVVNALLETITAELKAGHEVGLIGFGTFSVKERAART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P K I + P F+AGK LKE +N
Sbjct: 60 GRNPQTGKEIEIAAAKTPGFKAGKGLKEAVN 90
>gi|218885662|ref|YP_002434983.1| histone family protein DNA-binding protein [Desulfovibrio
vulgaris str. 'Miyazaki F']
gi|218756616|gb|ACL07515.1| histone family protein DNA-binding protein [Desulfovibrio
vulgaris str. 'Miyazaki F']
Length = 91
Score = 95.2 bits (236), Expect = 3e-18, Method: Composition-based stats.
Identities = 40/91 (43%), Positives = 57/91 (62%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI T++++ + ++ +VN ++ M +ALA+G RVEIRGFGSF V+
Sbjct: 1 MNKSELIKTLSEET-NIPIEEAAMVVNTFVDNMKEALADGDRVEIRGFGSFKVKDYGGYS 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P ++ V+ K +PFFRAGK LKE LN
Sbjct: 60 GRNPKTGDMVVVQPKRLPFFRAGKELKEFLN 90
>gi|32034579|ref|ZP_00134735.1| COG0776: Bacterial nucleoid DNA-binding protein [Actinobacillus
pleuropneumoniae serovar 1 str. 4074]
gi|126207602|ref|YP_001052827.1| DNA-binding protein HU [Actinobacillus pleuropneumoniae L20]
gi|165975570|ref|YP_001651163.1| DNA-binding protein HU [Actinobacillus pleuropneumoniae serovar 3
str. JL03]
gi|190149383|ref|YP_001967908.1| DNA-binding protein HU [Actinobacillus pleuropneumoniae serovar 7
str. AP76]
gi|303249818|ref|ZP_07336022.1| DNA-binding protein HU [Actinobacillus pleuropneumoniae serovar 6
str. Femo]
gi|303251938|ref|ZP_07338109.1| DNA-binding protein HU [Actinobacillus pleuropneumoniae serovar 2
str. 4226]
gi|307244922|ref|ZP_07527019.1| DNA-binding protein HU [Actinobacillus pleuropneumoniae serovar 1
str. 4074]
gi|307247097|ref|ZP_07529149.1| DNA-binding protein HU [Actinobacillus pleuropneumoniae serovar 2
str. S1536]
gi|307249318|ref|ZP_07531312.1| DNA-binding protein HU [Actinobacillus pleuropneumoniae serovar 4
str. M62]
gi|307251641|ref|ZP_07533546.1| DNA-binding protein HU [Actinobacillus pleuropneumoniae serovar 6
str. Femo]
gi|307253876|ref|ZP_07535728.1| DNA-binding protein HU [Actinobacillus pleuropneumoniae serovar 9
str. CVJ13261]
gi|307256139|ref|ZP_07537926.1| DNA-binding protein HU [Actinobacillus pleuropneumoniae serovar
10 str. D13039]
gi|307258330|ref|ZP_07540071.1| DNA-binding protein HU [Actinobacillus pleuropneumoniae serovar
11 str. 56153]
gi|307260571|ref|ZP_07542263.1| DNA-binding protein HU [Actinobacillus pleuropneumoniae serovar
12 str. 1096]
gi|307262701|ref|ZP_07544329.1| DNA-binding protein HU [Actinobacillus pleuropneumoniae serovar
13 str. N273]
gi|126096394|gb|ABN73222.1| DNA-binding protein HU [Actinobacillus pleuropneumoniae serovar
5b str. L20]
gi|165875671|gb|ABY68719.1| DNA-binding protein HU [Actinobacillus pleuropneumoniae serovar 3
str. JL03]
gi|189914514|gb|ACE60766.1| DNA-binding protein HU [Actinobacillus pleuropneumoniae serovar 7
str. AP76]
gi|302649368|gb|EFL79553.1| DNA-binding protein HU [Actinobacillus pleuropneumoniae serovar 2
str. 4226]
gi|302651385|gb|EFL81537.1| DNA-binding protein HU [Actinobacillus pleuropneumoniae serovar 6
str. Femo]
gi|306854087|gb|EFM86295.1| DNA-binding protein HU [Actinobacillus pleuropneumoniae serovar 1
str. 4074]
gi|306856346|gb|EFM88497.1| DNA-binding protein HU [Actinobacillus pleuropneumoniae serovar 2
str. S1536]
gi|306858612|gb|EFM90674.1| DNA-binding protein HU [Actinobacillus pleuropneumoniae serovar 4
str. M62]
gi|306860838|gb|EFM92846.1| DNA-binding protein HU [Actinobacillus pleuropneumoniae serovar 6
str. Femo]
gi|306863080|gb|EFM95022.1| DNA-binding protein HU [Actinobacillus pleuropneumoniae serovar 9
str. CVJ13261]
gi|306865320|gb|EFM97216.1| DNA-binding protein HU [Actinobacillus pleuropneumoniae serovar
10 str. D13039]
gi|306867514|gb|EFM99361.1| DNA-binding protein HU [Actinobacillus pleuropneumoniae serovar
11 str. 56153]
gi|306869648|gb|EFN01433.1| DNA-binding protein HU [Actinobacillus pleuropneumoniae serovar
12 str. 1096]
gi|306871956|gb|EFN03672.1| DNA-binding protein HU [Actinobacillus pleuropneumoniae serovar
13 str. N273]
Length = 90
Score = 95.2 bits (236), Expect = 3e-18, Method: Composition-based stats.
Identities = 32/91 (35%), Positives = 50/91 (54%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI IA +L+ +D + + L ++++L NG V++ GFG+F V +R AR
Sbjct: 1 MNKTELIDAIAA-GAELSKKDAKAALEATLNAISESLKNGDTVQLIGFGTFKVNERNART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + I + VP F AGK LK+ +
Sbjct: 60 GRNPRTGEEIKIAASKVPAFVAGKALKDLVK 90
>gi|207724057|ref|YP_002254455.1| integration host factor alpha-subunit (ihf-alpha) protein
[Ralstonia solanacearum MolK2]
gi|206589266|emb|CAQ36228.1| integration host factor alpha-subunit (ihf-alpha) protein
[Ralstonia solanacearum MolK2]
Length = 140
Score = 95.2 bits (236), Expect = 3e-18, Method: Composition-based stats.
Identities = 23/89 (25%), Positives = 45/89 (50%), Gaps = 1/89 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ L + ++ LN ++ + +V + + +AL G V++ GFG+F +R + R
Sbjct: 41 TKAELAEMLFEQ-VGLNKRESKDMVEAFFDVIREALEQGDSVKLSGFGNFQLRDKPQRPG 99
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P ++I + + V F A + LK +
Sbjct: 100 RNPKTGEIIPITARRVVTFHASQKLKALV 128
>gi|268593005|ref|ZP_06127226.1| DNA-binding protein HU [Providencia rettgeri DSM 1131]
gi|291311478|gb|EFE51931.1| DNA-binding protein HU [Providencia rettgeri DSM 1131]
Length = 90
Score = 95.2 bits (236), Expect = 3e-18, Method: Composition-based stats.
Identities = 31/91 (34%), Positives = 47/91 (51%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ L+ IA+ + L + + L +++ L G +V++ GFG+F V RAAR
Sbjct: 1 MNKTELVDAIAE-SADLTKVQAKAALESTLNAISETLKKGEQVQLVGFGTFKVSHRAART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + I + VP F AGK LKE +
Sbjct: 60 GRNPQTKAEIQIPATTVPAFSAGKALKEAVK 90
>gi|269798417|ref|YP_003312317.1| histone family protein DNA-binding protein [Veillonella parvula
DSM 2008]
gi|282850654|ref|ZP_06260033.1| DNA-binding protein HU [Veillonella parvula ATCC 17745]
gi|294792285|ref|ZP_06757433.1| DNA-binding protein HU [Veillonella sp. 6_1_27]
gi|294794144|ref|ZP_06759281.1| DNA-binding protein HU [Veillonella sp. 3_1_44]
gi|269095046|gb|ACZ25037.1| histone family protein DNA-binding protein [Veillonella parvula
DSM 2008]
gi|282580147|gb|EFB85551.1| DNA-binding protein HU [Veillonella parvula ATCC 17745]
gi|294455714|gb|EFG24086.1| DNA-binding protein HU [Veillonella sp. 3_1_44]
gi|294457515|gb|EFG25877.1| DNA-binding protein HU [Veillonella sp. 6_1_27]
Length = 99
Score = 95.2 bits (236), Expect = 3e-18, Method: Composition-based stats.
Identities = 40/91 (43%), Positives = 59/91 (64%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI ++A+K +L +D EK V + + + Q LA GG+V++ GFG+F VR+RAAR
Sbjct: 1 MNKTELIASVAQKT-ELTKKDAEKAVKAVFDTVAQELAAGGKVQVIGFGTFEVRERAARE 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P K I++ P F+AGK LKE++N
Sbjct: 60 GRNPQNGKTITIAASKSPAFKAGKGLKEQVN 90
>gi|285017870|ref|YP_003375581.1| integration host factor alpha-subunit (ihf-alpha) protein
[Xanthomonas albilineans GPE PC73]
gi|283473088|emb|CBA15593.1| putative integration host factor alpha-subunit (ihf-alpha)
protein [Xanthomonas albilineans]
Length = 99
Score = 95.2 bits (236), Expect = 3e-18, Method: Composition-based stats.
Identities = 25/89 (28%), Positives = 49/89 (55%), Gaps = 1/89 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ + + + LN ++ ++ V+ + + +AL G +V++ GFG+F +R++ R
Sbjct: 4 TKAEMAERLFDE-VGLNKREAKEFVDAFFDVLREALEQGRQVKLSGFGNFDLRRKNQRPG 62
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P + I + + V FR G+ LKER+
Sbjct: 63 RNPKTGEEIPISARTVVTFRPGQKLKERV 91
>gi|113869620|ref|YP_728109.1| HU family DNA-binding protein [Ralstonia eutropha H16]
gi|113528396|emb|CAJ94741.1| DNA-binding protein HU family [Ralstonia eutropha H16]
Length = 92
Score = 95.2 bits (236), Expect = 3e-18, Method: Composition-based stats.
Identities = 31/92 (33%), Positives = 47/92 (51%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI IA L E+ +N+ L + A+A G + + GFG+FS +R R+
Sbjct: 1 MTKTELIDAIAAGVDGLTKSKAEQALNVTLSAIMDAVAKGETLSLIGFGTFSKGERGERM 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
AR P + I VE F+AG+ K+ +N
Sbjct: 61 ARNPRTGEEIKVEAAKTVKFKAGQKFKDAVNQ 92
>gi|228911916|ref|ZP_04075657.1| DNA-binding protein HU 1 [Bacillus thuringiensis IBL 200]
gi|228924999|ref|ZP_04088129.1| DNA-binding protein HU 1 [Bacillus thuringiensis serovar
huazhongensis BGSC 4BD1]
gi|228834662|gb|EEM80171.1| DNA-binding protein HU 1 [Bacillus thuringiensis serovar
huazhongensis BGSC 4BD1]
gi|228847725|gb|EEM92638.1| DNA-binding protein HU 1 [Bacillus thuringiensis IBL 200]
Length = 93
Score = 95.2 bits (236), Expect = 3e-18, Method: Composition-based stats.
Identities = 36/91 (39%), Positives = 53/91 (58%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ L +A+K +L +D LL+ +T ALANG +V+I GFG+F VR+R+AR
Sbjct: 4 MNKTELTKVVAEK-AELTQKDAAAATQALLDTITNALANGDKVQILGFGTFEVRERSART 62
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + + + P F+AGK LKE +
Sbjct: 63 GRNPQTGEEMQIAASKAPAFKAGKELKEAVK 93
>gi|149926883|ref|ZP_01915142.1| Integration host factor, alpha subunit [Limnobacter sp. MED105]
gi|149824435|gb|EDM83653.1| Integration host factor, alpha subunit [Limnobacter sp. MED105]
Length = 122
Score = 95.2 bits (236), Expect = 3e-18, Method: Composition-based stats.
Identities = 22/89 (24%), Positives = 41/89 (46%), Gaps = 1/89 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ L + LN ++ + V+ +E+ L +G V++ GFG+F +R + R
Sbjct: 34 TKAELAEMLFDSL-GLNKREAKDFVDAFFDEIRTTLESGDSVKLSGFGNFQLRDKPQRPG 92
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P + I + + V F + LK +
Sbjct: 93 RNPKTGEEIPIAARRVVTFHPSQKLKALV 121
>gi|328951805|ref|YP_004369139.1| histone family protein DNA-binding protein [Desulfobacca
acetoxidans DSM 11109]
gi|328452129|gb|AEB07958.1| histone family protein DNA-binding protein [Desulfobacca
acetoxidans DSM 11109]
Length = 90
Score = 95.2 bits (236), Expect = 3e-18, Method: Composition-based stats.
Identities = 31/90 (34%), Positives = 47/90 (52%), Gaps = 1/90 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI +A + L + EK +N L+ MT +L G++ I G G FSV +RA R
Sbjct: 1 MTKADLISAMAAQ-ANLTKAETEKTLNALITVMTSSLQTDGKLSIPGLGVFSVNERAERT 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P + + + + F+ GK LKE +
Sbjct: 60 GRNPRTGEPMQIAASKMVKFKPGKALKEAV 89
>gi|229018912|ref|ZP_04175755.1| DNA-binding protein HU [Bacillus cereus AH1273]
gi|229098192|ref|ZP_04229139.1| DNA-binding protein HU [Bacillus cereus Rock3-29]
gi|229104286|ref|ZP_04234955.1| DNA-binding protein HU [Bacillus cereus Rock3-28]
gi|229117210|ref|ZP_04246588.1| DNA-binding protein HU [Bacillus cereus Rock1-3]
gi|228666110|gb|EEL21574.1| DNA-binding protein HU [Bacillus cereus Rock1-3]
gi|228678984|gb|EEL33192.1| DNA-binding protein HU [Bacillus cereus Rock3-28]
gi|228685090|gb|EEL39021.1| DNA-binding protein HU [Bacillus cereus Rock3-29]
gi|228742355|gb|EEL92512.1| DNA-binding protein HU [Bacillus cereus AH1273]
Length = 93
Score = 95.2 bits (236), Expect = 3e-18, Method: Composition-based stats.
Identities = 35/91 (38%), Positives = 57/91 (62%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI +A +N +++ ++ +V ++E +T ALA G +V++ GFG+F VR+RAAR
Sbjct: 4 MNKTELIKNVA-QNAEISQKEATVVVQTVVESITNALAAGEKVQLIGFGTFEVRERAART 62
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + + + VP F+AGK LKE +
Sbjct: 63 GRNPQTGEEMQIAASKVPAFKAGKELKEAVK 93
>gi|148284257|ref|YP_001248347.1| histone-like DNA-binding protein HU [Orientia tsutsugamushi str.
Boryong]
gi|146739696|emb|CAM79506.1| histone-like DNA-binding protein HU [Orientia tsutsugamushi str.
Boryong]
Length = 125
Score = 95.2 bits (236), Expect = 3e-18, Method: Composition-based stats.
Identities = 32/91 (35%), Positives = 48/91 (52%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ + I K N + D+E+ +N++L + +A+ NG + I GFGSF VR RAAR
Sbjct: 35 NKAEFVNFIHKNNTNMTKADIERALNLILRGVEKAIENGHDINIVGFGSFCVRFRAARDG 94
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
P I + E F+ GK LK+ N+
Sbjct: 95 HNPKTGAKIIIPESYQVVFKPGKTLKDACNN 125
>gi|94263644|ref|ZP_01287453.1| Histone-like bacterial DNA-binding protein [delta proteobacterium
MLMS-1]
gi|94267151|ref|ZP_01290783.1| Histone-like bacterial DNA-binding protein [delta proteobacterium
MLMS-1]
gi|93452119|gb|EAT02793.1| Histone-like bacterial DNA-binding protein [delta proteobacterium
MLMS-1]
gi|93455949|gb|EAT06104.1| Histone-like bacterial DNA-binding protein [delta proteobacterium
MLMS-1]
Length = 92
Score = 95.2 bits (236), Expect = 3e-18, Method: Composition-based stats.
Identities = 36/93 (38%), Positives = 54/93 (58%), Gaps = 1/93 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI +A + ++ ++ I +L M AL++G +EIRGFGSF+V++ +
Sbjct: 1 MNKSDLIEALATAS-EIPNREAAAITRTILAAMGDALSDGDNIEIRGFGSFTVKEYDSYY 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSP 93
R P + I V K +PFF+ GK L+ERLN
Sbjct: 60 GRNPKTGEKIRVAPKRMPFFKMGKELRERLNQE 92
>gi|14194654|sp|Q9LA96|DBHA_AERHY RecName: Full=DNA-binding protein HU-alpha
Length = 90
Score = 95.2 bits (236), Expect = 3e-18, Method: Composition-based stats.
Identities = 32/91 (35%), Positives = 47/91 (51%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ L+ IA K L+ + + ++ +TQ+L G V++ GFG+F V RA R
Sbjct: 1 MNKAQLVDAIAAK-ADLSKAQAKVALEEIINGITQSLKEGDAVQLVGFGTFKVNHRAGRT 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P K I + VP F AGK LK+ +
Sbjct: 60 GRNPQTGKEIQIAAANVPSFVAGKALKDAVK 90
>gi|127511364|ref|YP_001092561.1| histone family protein DNA-binding protein [Shewanella loihica
PV-4]
gi|126636659|gb|ABO22302.1| histone family protein DNA-binding protein [Shewanella loihica
PV-4]
Length = 90
Score = 95.2 bits (236), Expect = 3e-18, Method: Composition-based stats.
Identities = 33/91 (36%), Positives = 51/91 (56%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ L+ IA+ + +L + + + E + +A+ NG ++ I GFGSF RAAR
Sbjct: 1 MNKTELVAKIAE-SAELTKAEAARALKSFEETVAEAMKNGEKISIVGFGSFETTSRAART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P K I + +VP F+AGK LK+ +N
Sbjct: 60 GRNPQTGKEIQIPAAVVPKFKAGKTLKDSVN 90
>gi|312862684|ref|ZP_07722924.1| DNA-binding protein HU-beta [Streptococcus vestibularis F0396]
gi|322516639|ref|ZP_08069553.1| DNA-binding protein HU [Streptococcus vestibularis ATCC 49124]
gi|311101544|gb|EFQ59747.1| DNA-binding protein HU-beta [Streptococcus vestibularis F0396]
gi|322124909|gb|EFX96333.1| DNA-binding protein HU [Streptococcus vestibularis ATCC 49124]
Length = 91
Score = 95.2 bits (236), Expect = 3e-18, Method: Composition-based stats.
Identities = 33/90 (36%), Positives = 51/90 (56%), Gaps = 1/90 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K LI +A+ +L +D V+ + + + LA G +V++ GFG+F VR+RAAR
Sbjct: 3 NKQDLIAKVAEAT-ELTKKDSAAAVDAVFASIEEFLATGEKVQLIGFGNFEVRERAARQG 61
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + IS+ VP F+AGK LK+ +
Sbjct: 62 RNPQTGETISIAASKVPAFKAGKALKDAVK 91
>gi|310766847|gb|ADP11797.1| HopD, DNA-binding protein HU-beta (Synonym HupB) [Erwinia sp.
Ejp617]
Length = 90
Score = 95.2 bits (236), Expect = 3e-18, Method: Composition-based stats.
Identities = 34/91 (37%), Positives = 52/91 (57%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI IA + ++ V +I+ ++ +T++L G V + FG+FSVR+RA R
Sbjct: 1 MNKSQLIEKIAA-DADVSKAAVGRILEAFIDTVTKSLQAGEEVALLNFGTFSVRERAERP 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P K I++ + V FRAGK L+E +
Sbjct: 60 GRNPQTGKEITIAARKVAGFRAGKELREAVK 90
>gi|307825166|ref|ZP_07655387.1| histone family protein DNA-binding protein [Methylobacter
tundripaludum SV96]
gi|307733914|gb|EFO04770.1| histone family protein DNA-binding protein [Methylobacter
tundripaludum SV96]
Length = 103
Score = 95.2 bits (236), Expect = 3e-18, Method: Composition-based stats.
Identities = 34/91 (37%), Positives = 55/91 (60%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI +AKK P L ++VE V ++E+M++AL R+EIRGFGSFS+
Sbjct: 1 MTKSKLIDLLAKKWPHLERKEVELAVGCMIEQMSKALMANDRIEIRGFGSFSLHYHPPFT 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + ++ + P+F+ G+ L++R++
Sbjct: 61 GRNPRTGAELKLQARYSPYFKPGRELRQRVD 91
>gi|217076815|ref|YP_002334531.1| DNA-binding protein HU 1 [Thermosipho africanus TCF52B]
gi|217036668|gb|ACJ75190.1| DNA-binding protein HU 1 [Thermosipho africanus TCF52B]
Length = 92
Score = 95.2 bits (236), Expect = 3e-18, Method: Composition-based stats.
Identities = 35/92 (38%), Positives = 57/92 (61%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K L+ IA+K P+L +D++ +V+ + E ++ ALA G +V++ GFG+F VRK R
Sbjct: 1 MSKKELVNMIAEKIPELKKKDIKAVVDAVFESISDALAKGEKVQLIGFGTFEVRKAEERT 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
P ++ I + + VP F+ GK LKE++N
Sbjct: 61 GVNPRTREKIKIPARKVPKFKPGKELKEKVNK 92
>gi|152979211|ref|YP_001344840.1| integration host factor, beta subunit [Actinobacillus
succinogenes 130Z]
gi|171704341|sp|A6VPK8|IHFB_ACTSZ RecName: Full=Integration host factor subunit beta;
Short=IHF-beta
gi|150840934|gb|ABR74905.1| integration host factor, beta subunit [Actinobacillus
succinogenes 130Z]
Length = 94
Score = 95.2 bits (236), Expect = 3e-18, Method: Composition-based stats.
Identities = 44/91 (48%), Positives = 61/91 (67%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI +AKKNP ++ + VE V +LE+M+ +L N R+EIRGFGSFS+ R RL
Sbjct: 1 MTKSELIELLAKKNPSISTKIVENSVKEILEQMSGSLENSDRIEIRGFGSFSLHYRQPRL 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + + ++ K VP F+AGK LKER++
Sbjct: 61 GRNPKTGESVKLDAKCVPHFKAGKELKERVD 91
>gi|148241580|ref|YP_001226737.1| DNA-binding protein HU [Synechococcus sp. RCC307]
gi|147849890|emb|CAK27384.1| DNA-binding protein HU [Synechococcus sp. RCC307]
Length = 91
Score = 95.2 bits (236), Expect = 3e-18, Method: Composition-based stats.
Identities = 32/90 (35%), Positives = 52/90 (57%), Gaps = 1/90 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ L+ +A + +L DV ++V+ +E + ++ G +V I GFGSF R+R+AR
Sbjct: 1 MNKADLVNLVAART-ELTKTDVSQVVDAAIETIIDSVVEGKKVSILGFGSFESRERSARQ 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
P + I++ K VP F AGK K+R+
Sbjct: 60 GLNPKTGEKIAIPAKKVPAFTAGKMFKDRV 89
>gi|83310091|ref|YP_420355.1| nucleoid DNA-binding protein [Magnetospirillum magneticum AMB-1]
gi|82944932|dbj|BAE49796.1| Bacterial nucleoid DNA-binding protein [Magnetospirillum magneticum
AMB-1]
Length = 110
Score = 95.2 bits (236), Expect = 3e-18, Method: Composition-based stats.
Identities = 32/91 (35%), Positives = 47/91 (51%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI +A + D ++ + E +T A+ +G V + GFGSFSV R AR
Sbjct: 19 MNKSELIAAVAD-GANMTKADAASAIDAVFEAVTAAMKSGDDVRLVGFGSFSVSARPARE 77
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P K +++ F AGK+LK+ +N
Sbjct: 78 GRNPQTGKTLTIAASKSAKFTAGKSLKDTIN 108
>gi|33594401|ref|NP_882045.1| DNA-binding protein HU-beta [Bordetella pertussis Tohama I]
gi|33597120|ref|NP_884763.1| DNA-binding protein HU-beta [Bordetella parapertussis 12822]
gi|33600964|ref|NP_888524.1| DNA-binding protein HU-beta [Bordetella bronchiseptica RB50]
gi|163857015|ref|YP_001631313.1| DNA-binding protein HU-beta [Bordetella petrii DSM 12804]
gi|293604392|ref|ZP_06686799.1| HU family DNA-binding protein [Achromobacter piechaudii ATCC
43553]
gi|311105151|ref|YP_003978004.1| DNA-binding protein HU-beta [Achromobacter xylosoxidans A8]
gi|5777374|emb|CAB53382.1| DNA-binding protein Hu-beta [Bordetella pertussis]
gi|5777382|emb|CAB53380.1| Hu-beta [Bordetella bronchiseptica]
gi|33564476|emb|CAE43789.1| DNA-binding protein Hu-beta [Bordetella pertussis Tohama I]
gi|33566571|emb|CAE37828.1| DNA-binding protein Hu-beta [Bordetella parapertussis]
gi|33575399|emb|CAE32476.1| DNA-binding protein Hu-beta [Bordetella bronchiseptica RB50]
gi|163260743|emb|CAP43045.1| DNA-binding protein Hu-beta [Bordetella petrii]
gi|292817269|gb|EFF76343.1| HU family DNA-binding protein [Achromobacter piechaudii ATCC
43553]
gi|310759840|gb|ADP15289.1| DNA-binding protein HU-beta [Achromobacter xylosoxidans A8]
gi|317402747|gb|EFV83294.1| DNA-binding protein Hu-beta [Achromobacter xylosoxidans C54]
gi|332383812|gb|AEE68659.1| DNA-binding protein HU-beta [Bordetella pertussis CS]
Length = 90
Score = 95.2 bits (236), Expect = 3e-18, Method: Composition-based stats.
Identities = 33/91 (36%), Positives = 50/91 (54%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI IA K ++ + ++ L+ + L GG V + GFG+F+V RAAR
Sbjct: 1 MNKTELIDHIASK-ADISKAAAGRSLDALIGAVKTTLKKGGTVTLVGFGTFAVSARAART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + I +++ VP FR GK LK+ +N
Sbjct: 60 GRNPRTGETIKIKKAKVPKFRPGKALKDAVN 90
>gi|148266417|ref|YP_001233123.1| histone family protein DNA-binding protein [Geobacter
uraniireducens Rf4]
gi|222056893|ref|YP_002539255.1| histone family protein DNA-binding protein [Geobacter sp. FRC-32]
gi|146399917|gb|ABQ28550.1| histone family protein DNA-binding protein [Geobacter
uraniireducens Rf4]
gi|221566182|gb|ACM22154.1| histone family protein DNA-binding protein [Geobacter sp. FRC-32]
Length = 94
Score = 95.2 bits (236), Expect = 3e-18, Method: Composition-based stats.
Identities = 36/95 (37%), Positives = 47/95 (49%), Gaps = 1/95 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ L+ +A K+ L EK V + ++ AL G RV + GFGSF V R AR
Sbjct: 1 MTKAELVEAVA-KSASLTKGAAEKAVGAFISTVSGALKKGDRVTLVGFGSFEVASRKART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDS 95
R P K I + VP FR GK LK+ + S
Sbjct: 60 GRNPQTGKEIKIAAAKVPKFRPGKALKDAVASKKK 94
>gi|120597447|ref|YP_962021.1| histone family protein DNA-binding protein [Shewanella sp.
W3-18-1]
gi|126172756|ref|YP_001048905.1| histone family protein DNA-binding protein [Shewanella baltica
OS155]
gi|146294412|ref|YP_001184836.1| histone family protein DNA-binding protein [Shewanella
putrefaciens CN-32]
gi|153002323|ref|YP_001368004.1| histone family protein DNA-binding protein [Shewanella baltica
OS185]
gi|160877047|ref|YP_001556363.1| histone family protein DNA-binding protein [Shewanella baltica
OS195]
gi|217974911|ref|YP_002359662.1| histone family protein DNA-binding protein [Shewanella baltica
OS223]
gi|304410864|ref|ZP_07392481.1| histone family protein DNA-binding protein [Shewanella baltica
OS183]
gi|307304965|ref|ZP_07584715.1| histone family protein DNA-binding protein [Shewanella baltica
BA175]
gi|120557540|gb|ABM23467.1| histone family protein DNA-binding protein [Shewanella sp.
W3-18-1]
gi|125995961|gb|ABN60036.1| histone family protein DNA-binding protein [Shewanella baltica
OS155]
gi|145566102|gb|ABP77037.1| histone family protein DNA-binding protein [Shewanella
putrefaciens CN-32]
gi|151366941|gb|ABS09941.1| histone family protein DNA-binding protein [Shewanella baltica
OS185]
gi|160862569|gb|ABX51103.1| histone family protein DNA-binding protein [Shewanella baltica
OS195]
gi|217500046|gb|ACK48239.1| histone family protein DNA-binding protein [Shewanella baltica
OS223]
gi|304350761|gb|EFM15162.1| histone family protein DNA-binding protein [Shewanella baltica
OS183]
gi|306912367|gb|EFN42791.1| histone family protein DNA-binding protein [Shewanella baltica
BA175]
gi|315269251|gb|ADT96104.1| histone family protein DNA-binding protein [Shewanella baltica
OS678]
gi|319427766|gb|ADV55840.1| histone family protein DNA-binding protein [Shewanella
putrefaciens 200]
Length = 90
Score = 95.2 bits (236), Expect = 3e-18, Method: Composition-based stats.
Identities = 34/91 (37%), Positives = 50/91 (54%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI IA+ N L + + + +T+++ NG ++ I GFGSF RAAR
Sbjct: 1 MNKTELIAKIAE-NADLTKVEAARALKSFEAAITESMKNGDKISIVGFGSFETATRAART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P K I + E VP F+AGK L++ +N
Sbjct: 60 GRNPQTGKEIQIAEATVPKFKAGKTLRDSVN 90
>gi|332879942|ref|ZP_08447627.1| DNA-binding protein HU-beta [Capnocytophaga sp. oral taxon 329
str. F0087]
gi|332682153|gb|EGJ55065.1| DNA-binding protein HU-beta [Capnocytophaga sp. oral taxon 329
str. F0087]
Length = 91
Score = 95.2 bits (236), Expect = 3e-18, Method: Composition-based stats.
Identities = 36/92 (39%), Positives = 51/92 (55%), Gaps = 1/92 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI IA + L+ D +K V + +AL NG +V I GFG++SV ++ AR
Sbjct: 1 MNKTELIDAIAAE-AGLSKVDAKKAVEAFFSSVEKALTNGDKVSIVGFGAWSVAEKEARD 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
AR P +VI V K V F+AG L + +N
Sbjct: 60 ARNPRTGEVIKVPAKKVVKFKAGTELADAVNK 91
>gi|331004374|ref|ZP_08327847.1| hypothetical protein HMPREF0491_02709 [Lachnospiraceae oral taxon
107 str. F0167]
gi|330411104|gb|EGG90523.1| hypothetical protein HMPREF0491_02709 [Lachnospiraceae oral taxon
107 str. F0167]
Length = 93
Score = 95.2 bits (236), Expect = 3e-18, Method: Composition-based stats.
Identities = 29/93 (31%), Positives = 55/93 (59%), Gaps = 1/93 (1%)
Query: 1 MIKSSLIGTIAKKNPK-LNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAAR 59
M ++ L+ +AKK + ++VE + ++ +T+ L+N G++++ GFG+F R AR
Sbjct: 1 MNRTELVDAMAKKMGNSVTKKEVESALKSFVDVVTEELSNKGKIQLVGFGTFETSVRPAR 60
Query: 60 LARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P + + + E +VP F+ GK LK+ +N+
Sbjct: 61 EGRNPRTGETMKIAESVVPKFKPGKALKDAVNN 93
>gi|312194920|ref|YP_004014981.1| histone family protein DNA-binding protein [Frankia sp. EuI1c]
gi|311226256|gb|ADP79111.1| histone family protein DNA-binding protein [Frankia sp. EuI1c]
Length = 93
Score = 95.2 bits (236), Expect = 3e-18, Method: Composition-based stats.
Identities = 29/93 (31%), Positives = 46/93 (49%), Gaps = 1/93 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS L+ IA++ + K V+ + + +A++ G +V I GFG F +RA R
Sbjct: 1 MNKSQLVDRIAQQIEG-GRSNATKAVDAVFHAIQEAVSAGEKVTITGFGVFERVERAERT 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSP 93
R P + + V +VP FR G K ++S
Sbjct: 60 GRNPATGEPVHVPASVVPKFRPGSEFKSSVSSN 92
>gi|212703905|ref|ZP_03312033.1| hypothetical protein DESPIG_01958 [Desulfovibrio piger ATCC
29098]
gi|212672608|gb|EEB33091.1| hypothetical protein DESPIG_01958 [Desulfovibrio piger ATCC
29098]
Length = 91
Score = 95.2 bits (236), Expect = 3e-18, Method: Composition-based stats.
Identities = 31/91 (34%), Positives = 46/91 (50%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ L+ I K E+ ++ ++ + +ALA+G V GFGSF V +RAAR
Sbjct: 1 MTKAELVEKIHAKAGLPTKAKAEEALDAVVAALREALASGESVTFTGFGSFKVVERAARK 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P K I++ V F GK LK+ +
Sbjct: 61 GRNPRTGKEITIPASKVAKFTPGKGLKDAIK 91
>gi|170739317|ref|YP_001767972.1| histone family protein DNA-binding protein [Methylobacterium sp.
4-46]
gi|168193591|gb|ACA15538.1| histone family protein DNA-binding protein [Methylobacterium sp.
4-46]
Length = 102
Score = 94.8 bits (235), Expect = 3e-18, Method: Composition-based stats.
Identities = 37/98 (37%), Positives = 56/98 (57%), Gaps = 1/98 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M+++ LI +A NP L + + +V +L+ +T+AL G R+E+RGFG R AR
Sbjct: 1 MLRAQLIQRVAALNPHLPHGQADALVRAVLDRITEALMEGDRIELRGFGVLKTTAREARQ 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN-SPDSTL 97
+R P + + V K FRA + + ERLN +PD TL
Sbjct: 61 SRNPRTGEAVEVPAKRDVAFRASREMHERLNPTPDQTL 98
>gi|87199383|ref|YP_496640.1| histone-like DNA-binding protein [Novosphingobium aromaticivorans
DSM 12444]
gi|87135064|gb|ABD25806.1| histone-like DNA-binding protein [Novosphingobium aromaticivorans
DSM 12444]
Length = 90
Score = 94.8 bits (235), Expect = 3e-18, Method: Composition-based stats.
Identities = 36/91 (39%), Positives = 53/91 (58%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LIG++A + L+ D K V + E ++ ALA G V + GFG+FSV KR A
Sbjct: 1 MNKNDLIGSVADAS-GLSKGDATKAVEAVFESISGALAKGDEVRLVGFGTFSVAKRKAST 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + +S++ P F+AGK LK+ +N
Sbjct: 60 GRNPRTGEPMSIKASAQPKFKAGKGLKDAVN 90
>gi|117924608|ref|YP_865225.1| integration host factor, subunit alpha [Magnetococcus sp. MC-1]
gi|117926119|ref|YP_866736.1| integration host factor, subunit alpha [Magnetococcus sp. MC-1]
gi|117608364|gb|ABK43819.1| integration host factor, alpha subunit [Magnetococcus sp. MC-1]
gi|117609875|gb|ABK45330.1| integration host factor, alpha subunit [Magnetococcus sp. MC-1]
Length = 96
Score = 94.8 bits (235), Expect = 3e-18, Method: Composition-based stats.
Identities = 25/92 (27%), Positives = 48/92 (52%), Gaps = 1/92 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ ++ T+ + L+ ++ +V + E + L +G V+I GFG FS+R + R
Sbjct: 3 MTKADIVQTVYHRL-GLSKKESADVVESVFELIRSQLESGEPVKISGFGGFSIRDKKPRQ 61
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P + + + + V F+A + L +R+N
Sbjct: 62 GRNPKTGEDVEISARRVVTFKASQILLDRVNK 93
>gi|148552974|ref|YP_001260556.1| histone family protein DNA-binding protein [Sphingomonas
wittichii RW1]
gi|148498164|gb|ABQ66418.1| histone family protein DNA-binding protein [Sphingomonas
wittichii RW1]
Length = 90
Score = 94.8 bits (235), Expect = 3e-18, Method: Composition-based stats.
Identities = 32/91 (35%), Positives = 46/91 (50%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K LIGT+A+ + D K V + + +T L G V + GFG+FSV KR A
Sbjct: 1 MNKQELIGTVAEAT-GMTKNDASKAVEAVFDSITTQLKKGDEVRLVGFGTFSVTKRKAST 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + + + P F+ GK LK+ +N
Sbjct: 60 GRNPRTGEPMKISASSQPKFKPGKGLKDAVN 90
>gi|152983243|ref|YP_001353224.1| DNA-binding protein HU-beta ( histone-like DNA-binding protein)
[Janthinobacterium sp. Marseille]
gi|151283320|gb|ABR91730.1| DNA-binding protein Hu-beta (bacterial histone-like DNA-binding
protein) [Janthinobacterium sp. Marseille]
Length = 90
Score = 94.8 bits (235), Expect = 3e-18, Method: Composition-based stats.
Identities = 31/91 (34%), Positives = 49/91 (53%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI IA + ++ + ++ ++ + L G V + GFG+FSV KRAAR
Sbjct: 1 MNKTELIDHIAG-SADISKAAAARALDSVIGAVKTTLKKNGSVTLVGFGTFSVGKRAART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + I ++ VP F+ GK LK+ +N
Sbjct: 60 GRNPRTGEAIKIKAAKVPKFKPGKALKDAVN 90
>gi|319786727|ref|YP_004146202.1| integration host factor subunit alpha [Pseudoxanthomonas
suwonensis 11-1]
gi|317465239|gb|ADV26971.1| integration host factor, alpha subunit [Pseudoxanthomonas
suwonensis 11-1]
Length = 101
Score = 94.8 bits (235), Expect = 3e-18, Method: Composition-based stats.
Identities = 25/89 (28%), Positives = 50/89 (56%), Gaps = 1/89 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ + + + LN ++ ++ V+ + + +AL +G +V++ GFG+F +R++ R
Sbjct: 4 TKAEMAERLFDE-VGLNKREAKEFVDAFFDVLREALQDGRQVKLSGFGNFDLRRKNQRPG 62
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P + I + + V FR G+ LKER+
Sbjct: 63 RNPKTGEEIPISARTVVTFRPGQKLKERV 91
>gi|70724919|ref|YP_257126.1| hypothetical protein pSG3GP_17 [Sodalis glossinidius]
gi|68697150|emb|CAI59408.1| hypothetical protein pSG3.17 [Sodalis glossinidius]
Length = 90
Score = 94.8 bits (235), Expect = 3e-18, Method: Composition-based stats.
Identities = 33/90 (36%), Positives = 54/90 (60%), Gaps = 1/90 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI +++K ++ +++ + + +TQ+LA+G V+I GFG+F V+ RA R
Sbjct: 1 MNKSHLIRAVSEKT-DISKIKAGFVIDAITDAVTQSLASGDDVKITGFGTFEVKTRAERP 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P + +++ VP FRAGK LKE +
Sbjct: 60 GRNPKTGEAMTIPAARVPAFRAGKGLKEAV 89
>gi|322417739|ref|YP_004196962.1| histone family protein DNA-binding protein [Geobacter sp. M18]
gi|320124126|gb|ADW11686.1| histone family protein DNA-binding protein [Geobacter sp. M18]
Length = 94
Score = 94.8 bits (235), Expect = 3e-18, Method: Composition-based stats.
Identities = 35/95 (36%), Positives = 48/95 (50%), Gaps = 1/95 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ L+ +A K+ + EK V + ++ AL G RV + GFGSF V R AR
Sbjct: 1 MTKAELVEAVA-KSANIPKAAAEKAVGAFISTVSGALKKGDRVTLVGFGSFEVASRQART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDS 95
R P K I + E VP FR GK LK+ + +
Sbjct: 60 GRNPQTGKEIKIAEAKVPKFRPGKALKDAIAAKKK 94
>gi|116513919|ref|YP_812825.1| nucleoid DNA-binding protein [Lactobacillus delbrueckii subsp.
bulgaricus ATCC BAA-365]
gi|116093234|gb|ABJ58387.1| bacterial nucleoid protein Hbs [Lactobacillus delbrueckii subsp.
bulgaricus ATCC BAA-365]
Length = 91
Score = 94.8 bits (235), Expect = 3e-18, Method: Composition-based stats.
Identities = 33/90 (36%), Positives = 50/90 (55%), Gaps = 1/90 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ L+ +A K KL +DV + V+ + E + + LA G +V++ GFG+F VR RAAR
Sbjct: 3 NKAELVSEVAAKT-KLTKKDVSEAVDAVFEAIQEDLAKGEKVQLIGFGTFEVRDRAARKG 61
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P I + P F+ GK LK+ +
Sbjct: 62 RNPQTGAEIEIPASKGPAFKPGKALKDAVK 91
>gi|160935949|ref|ZP_02083323.1| hypothetical protein CLOBOL_00844 [Clostridium bolteae ATCC
BAA-613]
gi|158441191|gb|EDP18908.1| hypothetical protein CLOBOL_00844 [Clostridium bolteae ATCC
BAA-613]
Length = 91
Score = 94.8 bits (235), Expect = 3e-18, Method: Composition-based stats.
Identities = 36/92 (39%), Positives = 57/92 (61%), Gaps = 1/92 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI +A+K +L+ +D EK V + +++ L GG+V++ GFG+F V +RAAR
Sbjct: 1 MNKTELIAAVAEK-AELSKKDAEKAVKAFTDAVSEELVKGGKVQLVGFGTFEVSERAARE 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P K +++E P F+AGK LK+ +N
Sbjct: 60 GRNPKTGKTMTIEASKTPKFKAGKALKDEVNK 91
>gi|210623292|ref|ZP_03293709.1| hypothetical protein CLOHIR_01659 [Clostridium hiranonis DSM
13275]
gi|210153693|gb|EEA84699.1| hypothetical protein CLOHIR_01659 [Clostridium hiranonis DSM
13275]
Length = 92
Score = 94.8 bits (235), Expect = 3e-18, Method: Composition-based stats.
Identities = 34/93 (36%), Positives = 58/93 (62%), Gaps = 2/93 (2%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ L+ +A+K+ +L ++ E +N +E + +AL +G +V++ GFG+F R RAAR
Sbjct: 1 MNKAELVSKMAEKS-ELTKKEAEAALNAFMESVEEALVSGEKVQLVGFGTFETRDRAARQ 59
Query: 61 ARAPLAQKV-ISVEEKMVPFFRAGKNLKERLNS 92
R P + IS+ P F+AGK LK+++N+
Sbjct: 60 GRNPRNPEEVISIPASKAPVFKAGKGLKDKVNA 92
>gi|149910317|ref|ZP_01898961.1| DNA-binding protein, HU family [Moritella sp. PE36]
gi|149806677|gb|EDM66644.1| DNA-binding protein, HU family [Moritella sp. PE36]
Length = 91
Score = 94.8 bits (235), Expect = 3e-18, Method: Composition-based stats.
Identities = 33/92 (35%), Positives = 50/92 (54%), Gaps = 1/92 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI +A K ++ + ++ ++E +T+ L V + GFG+FSVR RAAR
Sbjct: 1 MNKAQLIDCVAAK-ADISKAAAGRAIDAMIESVTETLVTEESVTLVGFGTFSVRDRAART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P I + +P F+AGK LK+ L S
Sbjct: 60 GRNPQTGAEIQIAASKLPAFKAGKLLKDALKS 91
>gi|332283861|ref|YP_004415772.1| DNA-binding protein Hu-beta [Pusillimonas sp. T7-7]
gi|330427814|gb|AEC19148.1| DNA-binding protein Hu-beta [Pusillimonas sp. T7-7]
Length = 90
Score = 94.8 bits (235), Expect = 3e-18, Method: Composition-based stats.
Identities = 32/91 (35%), Positives = 49/91 (53%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI I+ K L+ D + + + + L G V + GFG+F+V +RAAR
Sbjct: 1 MNKTELIEHISTK-ADLSKADAGRALEAFIGAVKTTLKKKGTVTLVGFGTFAVSERAART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + I +++ VP FR GK LK+ +N
Sbjct: 60 GRNPRTGEAIKIKKAKVPKFRPGKALKDAVN 90
>gi|261210437|ref|ZP_05924731.1| DNA-binding protein HU-alpha [Vibrio sp. RC341]
gi|260840495|gb|EEX67061.1| DNA-binding protein HU-alpha [Vibrio sp. RC341]
Length = 90
Score = 94.8 bits (235), Expect = 3e-18, Method: Composition-based stats.
Identities = 32/91 (35%), Positives = 47/91 (51%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI IA+K L + + L + AL +G +V++ GFG+F V R+AR
Sbjct: 1 MNKTQLIDFIAEK-ADLTKAQAKAALEATLGAVEGALKDGDQVQLIGFGTFKVNHRSART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + I + VP F AGK LK+ +
Sbjct: 60 GRNPKTGEEIKIAAANVPAFVAGKALKDAIK 90
>gi|322418662|ref|YP_004197885.1| histone family protein DNA-binding protein [Geobacter sp. M18]
gi|320125049|gb|ADW12609.1| histone family protein DNA-binding protein [Geobacter sp. M18]
Length = 91
Score = 94.8 bits (235), Expect = 3e-18, Method: Composition-based stats.
Identities = 33/91 (36%), Positives = 51/91 (56%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ L+ IA++ +L D +K + +L+ +T LA G +V + GFG+FSV +RAAR
Sbjct: 1 MNKAELVSAIAEE-AQLTKVDADKALTGILDALTDCLAAGDKVTLVGFGTFSVAERAART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
+ P K I + P F+ G LK +N
Sbjct: 60 GQNPQTGKKIEIAASTAPKFKPGNTLKALIN 90
>gi|291521609|emb|CBK79902.1| Bacterial nucleoid DNA-binding protein [Coprococcus catus GD/7]
Length = 91
Score = 94.8 bits (235), Expect = 3e-18, Method: Composition-based stats.
Identities = 28/92 (30%), Positives = 50/92 (54%), Gaps = 1/92 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ L+ +A+K + D EK + ++ +T L G ++++ GFG+F V +R R
Sbjct: 1 MNKAELVAAMAEKT-GMKKNDAEKALKAFVDVVTDELVKGEKIQLVGFGTFEVSERPERE 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P + + + P F+AGK LK+ +N+
Sbjct: 60 GRNPRTGETMKIAASKAPKFKAGKALKDMINA 91
>gi|228476872|ref|ZP_04061517.1| DNA-binding protein HU 1 [Streptococcus salivarius SK126]
gi|322372800|ref|ZP_08047336.1| DNA-binding protein HU [Streptococcus sp. C150]
gi|228251446|gb|EEK10591.1| DNA-binding protein HU 1 [Streptococcus salivarius SK126]
gi|321277842|gb|EFX54911.1| DNA-binding protein HU [Streptococcus sp. C150]
Length = 91
Score = 94.8 bits (235), Expect = 3e-18, Method: Composition-based stats.
Identities = 33/90 (36%), Positives = 51/90 (56%), Gaps = 1/90 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K LI +A+ +L +D V+ + + + LA G +V++ GFG+F VR+RAAR
Sbjct: 3 NKQDLIAKVAEAT-ELTKKDSAAAVDAVFASIEEFLAAGEKVQLIGFGNFEVRERAARQG 61
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + IS+ VP F+AGK LK+ +
Sbjct: 62 RNPQTGEAISIAASKVPAFKAGKALKDAVK 91
>gi|220930448|ref|YP_002507357.1| histone family protein DNA-binding protein [Clostridium
cellulolyticum H10]
gi|220000776|gb|ACL77377.1| histone family protein DNA-binding protein [Clostridium
cellulolyticum H10]
Length = 91
Score = 94.8 bits (235), Expect = 3e-18, Method: Composition-based stats.
Identities = 40/92 (43%), Positives = 60/92 (65%), Gaps = 1/92 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI +A+K+ L +D +K +N +LE + +AL G +V++ GFGSF V++RAAR
Sbjct: 1 MNKSELIDKMAEKS-GLTKKDSDKALNAMLESVEEALTGGDKVQLIGFGSFEVKQRAARK 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P + I++ E P F+AGK+LKE +N
Sbjct: 60 GRNPQTMEEINIPESKAPVFKAGKDLKEMINK 91
>gi|15837345|ref|NP_298033.1| integration host factor subunit alpha [Xylella fastidiosa 9a5c]
gi|14194874|sp|Q9PFD5|IHFA_XYLFA RecName: Full=Integration host factor subunit alpha;
Short=IHF-alpha
gi|9105633|gb|AAF83553.1|AE003916_7 integration host factor, alpha subunit [Xylella fastidiosa 9a5c]
Length = 99
Score = 94.8 bits (235), Expect = 3e-18, Method: Composition-based stats.
Identities = 24/91 (26%), Positives = 51/91 (56%), Gaps = 1/91 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ ++ + + LN ++ ++ V+ + + AL G ++++ GFG+F +R + R
Sbjct: 4 TKAEMVERLFDE-VGLNKREAKEFVDTFFDLLRDALEQGRQIKLSGFGNFELRCKNQRPG 62
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P + I + + V FR+G+ LKER+++
Sbjct: 63 RNPKTGEEIPISARTVVTFRSGQKLKERVDA 93
>gi|260770646|ref|ZP_05879577.1| DNA-binding protein HU-alpha [Vibrio furnissii CIP 102972]
gi|260614372|gb|EEX39560.1| DNA-binding protein HU-alpha [Vibrio furnissii CIP 102972]
gi|315178408|gb|ADT85322.1| DNA-binding protein HU [Vibrio furnissii NCTC 11218]
Length = 90
Score = 94.8 bits (235), Expect = 3e-18, Method: Composition-based stats.
Identities = 33/91 (36%), Positives = 47/91 (51%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI IA+K L+ + + L + AL G +V++ GFG+F V RAAR
Sbjct: 1 MNKTQLIDFIAEK-ADLSKAQAKAALEATLGAVEGALKEGDQVQLIGFGTFKVNHRAART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + I + VP F AGK LK+ +
Sbjct: 60 GRNPKTGEEIKIAAANVPAFVAGKALKDSVK 90
>gi|167625721|ref|YP_001676015.1| histone family protein DNA-binding protein [Shewanella
halifaxensis HAW-EB4]
gi|167355743|gb|ABZ78356.1| histone family protein DNA-binding protein [Shewanella
halifaxensis HAW-EB4]
Length = 90
Score = 94.8 bits (235), Expect = 3e-18, Method: Composition-based stats.
Identities = 31/91 (34%), Positives = 50/91 (54%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ L+ +A+ + +L + + + + +A+ NG ++ I GFGSF +RAAR
Sbjct: 1 MNKTELVAKMAE-SAELTKAEAARALKSFEVTVAEAMKNGEKISIVGFGSFETTERAART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P K I + VP F+AGK LK+ +N
Sbjct: 60 GRNPQTGKEIQIPAATVPKFKAGKTLKDSVN 90
>gi|134094955|ref|YP_001100030.1| DNA-binding protein HU-beta [Herminiimonas arsenicoxydans]
gi|133738858|emb|CAL61905.1| DNA-binding protein HU-beta (NS1) (HU-1) [Herminiimonas
arsenicoxydans]
Length = 90
Score = 94.8 bits (235), Expect = 3e-18, Method: Composition-based stats.
Identities = 31/91 (34%), Positives = 49/91 (53%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI IA + ++ + ++ ++ + L G V + GFG+FSV KRAAR
Sbjct: 1 MNKTELIDHIAG-SADISKAAATRALDAVIVAVKTTLKKNGTVTLVGFGTFSVGKRAART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + I ++ VP F+ GK LK+ +N
Sbjct: 60 GRNPRTGEAIKIKAAKVPKFKPGKALKDAVN 90
>gi|238922939|ref|YP_002936452.1| DNA-binding protein HU [Eubacterium rectale ATCC 33656]
gi|238874611|gb|ACR74318.1| DNA-binding protein HU [Eubacterium rectale ATCC 33656]
Length = 99
Score = 94.8 bits (235), Expect = 3e-18, Method: Composition-based stats.
Identities = 29/91 (31%), Positives = 51/91 (56%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ L+ +A+K ++ +D E + + + + L G ++++ GFG+F V +RAAR
Sbjct: 10 MNKADLVAAMAEK-AGVSKKDAEASLKAFTDVVAEELKKGEKIQLVGFGTFEVSERAART 68
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P +++ P F+AGK LK+ LN
Sbjct: 69 GRNPQTGAEMTIAASKAPKFKAGKALKDSLN 99
>gi|237748740|ref|ZP_04579220.1| DNA-binding protein Hu-beta [Oxalobacter formigenes OXCC13]
gi|229380102|gb|EEO30193.1| DNA-binding protein Hu-beta [Oxalobacter formigenes OXCC13]
Length = 90
Score = 94.8 bits (235), Expect = 3e-18, Method: Composition-based stats.
Identities = 35/91 (38%), Positives = 55/91 (60%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI IA K+ ++ + ++ +++ +T +L N V + GFG+FSV +RAAR
Sbjct: 1 MNKTELIEHIA-KSADISKAAAARSLDAVIDAVTTSLKNNDSVTLVGFGTFSVGERAARS 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P +VI ++ VP FRAGK LK+ +N
Sbjct: 60 GRNPRTGEVIKIKSAKVPKFRAGKLLKDAVN 90
>gi|228472724|ref|ZP_04057482.1| DNA-binding protein HU [Capnocytophaga gingivalis ATCC 33624]
gi|228275775|gb|EEK14541.1| DNA-binding protein HU [Capnocytophaga gingivalis ATCC 33624]
Length = 90
Score = 94.8 bits (235), Expect = 3e-18, Method: Composition-based stats.
Identities = 32/91 (35%), Positives = 49/91 (53%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI IA++ L+ D +K + L + + L G ++ + GFGS+SV ++AAR
Sbjct: 1 MNKTELIDAIAQE-AGLSKADAKKALEAFLATVEKTLKKGDKISLVGFGSWSVTEKAARE 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P K I + K V F+AG L +N
Sbjct: 60 GRNPQTGKTIKIPAKKVVKFKAGTELSNAVN 90
>gi|229021542|ref|ZP_04178141.1| DNA-binding protein HU [Bacillus cereus AH1273]
gi|229027531|ref|ZP_04183759.1| DNA-binding protein HU [Bacillus cereus AH1272]
gi|229112981|ref|ZP_04242483.1| DNA-binding protein HU [Bacillus cereus Rock1-15]
gi|229164897|ref|ZP_04292713.1| DNA-binding protein HU [Bacillus cereus R309803]
gi|228618548|gb|EEK75558.1| DNA-binding protein HU [Bacillus cereus R309803]
gi|228670462|gb|EEL25803.1| DNA-binding protein HU [Bacillus cereus Rock1-15]
gi|228733777|gb|EEL84543.1| DNA-binding protein HU [Bacillus cereus AH1272]
gi|228739775|gb|EEL90173.1| DNA-binding protein HU [Bacillus cereus AH1273]
Length = 90
Score = 94.8 bits (235), Expect = 3e-18, Method: Composition-based stats.
Identities = 33/91 (36%), Positives = 53/91 (58%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ L +A+K +L +D +L+ +T ALA+ +V+I GFG+F VR+R+AR
Sbjct: 1 MNKTELTKVVAEK-AELTQKDAAAATQAVLDTITTALASEEKVQILGFGTFEVRERSART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + + + VP F+AGK LK+ +
Sbjct: 60 GRNPQTGEEMQIAASKVPAFKAGKELKDAVK 90
>gi|253701606|ref|YP_003022795.1| histone family protein DNA-binding protein [Geobacter sp. M21]
gi|251776456|gb|ACT19037.1| histone family protein DNA-binding protein [Geobacter sp. M21]
Length = 91
Score = 94.8 bits (235), Expect = 3e-18, Method: Composition-based stats.
Identities = 35/92 (38%), Positives = 53/92 (57%), Gaps = 1/92 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ L+ IA++ +L D EK + +L+ +T LA G +V + GFG+FSV +RAAR
Sbjct: 1 MNKAELVSAIAEE-AQLTKVDAEKSLMGILDALTNCLAAGDKVTLVGFGTFSVAERAART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
+ P K I + P F+ G LK+ +NS
Sbjct: 60 GQNPQTGKKIEIAASSAPKFKPGNTLKDLVNS 91
>gi|167755951|ref|ZP_02428078.1| hypothetical protein CLORAM_01471 [Clostridium ramosum DSM 1402]
gi|237733268|ref|ZP_04563749.1| predicted protein [Mollicutes bacterium D7]
gi|167703943|gb|EDS18522.1| hypothetical protein CLORAM_01471 [Clostridium ramosum DSM 1402]
gi|229383649|gb|EEO33740.1| predicted protein [Coprobacillus sp. D7]
Length = 91
Score = 94.8 bits (235), Expect = 3e-18, Method: Composition-based stats.
Identities = 29/92 (31%), Positives = 51/92 (55%), Gaps = 1/92 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ L+ IA ++ DV+K+V ++ +T+AL G +V ++GFG+F VR+R R
Sbjct: 1 MNKTELVEAIASST-EMTKTDVDKVVTAFVDVVTEALVKGDKVSLKGFGNFEVRERGERT 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P + +++ P F++ LK +N
Sbjct: 60 GRNPRTGETMTIAASKAPAFKSSSALKNAVNK 91
>gi|152980190|ref|YP_001353183.1| integration host factor alpha-subunit [Janthinobacterium sp.
Marseille]
gi|151280267|gb|ABR88677.1| integration host factor alpha-subunit [Janthinobacterium sp.
Marseille]
Length = 165
Score = 94.8 bits (235), Expect = 4e-18, Method: Composition-based stats.
Identities = 24/89 (26%), Positives = 44/89 (49%), Gaps = 1/89 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ L + ++ LN ++ + +V +E+ AL G V++ GFG+F +R + R
Sbjct: 66 TKAELAELLFEQ-VGLNKREAKDMVETFFDEIRNALERGESVKLSGFGNFQLRDKPQRPG 124
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P + I + + V F A + LK +
Sbjct: 125 RNPKTGEEIPITARRVVTFHASQKLKGMV 153
>gi|332971263|gb|EGK10226.1| DNA-binding protein HU [Desmospora sp. 8437]
Length = 91
Score = 94.8 bits (235), Expect = 4e-18, Method: Composition-based stats.
Identities = 36/91 (39%), Positives = 61/91 (67%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ L +A++ K + + ++V+++L+++++AL G +V + GFG+F VR+RAAR+
Sbjct: 1 MNKTELTKRVAQETGK-SKTEAGQMVDVVLDQISEALQRGEKVSLFGFGNFEVRERAARM 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
AR P + I VE K +P F+ GK LKE +N
Sbjct: 60 ARNPKTGETIHVEAKRIPAFKPGKQLKEVVN 90
>gi|241896283|ref|ZP_04783579.1| DNA-binding protein HU [Weissella paramesenteroides ATCC 33313]
gi|241870524|gb|EER74275.1| DNA-binding protein HU [Weissella paramesenteroides ATCC 33313]
Length = 91
Score = 94.8 bits (235), Expect = 4e-18, Method: Composition-based stats.
Identities = 29/90 (32%), Positives = 46/90 (51%), Gaps = 1/90 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K L+ +A L +D V+ + + + LA G +V++ GFG+F VR RAAR
Sbjct: 3 NKQELVTDVATAT-GLTKKDATAAVDAVFASIQETLAKGEKVQLIGFGNFEVRSRAARKG 61
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + I + +P F+ GK LK+ +
Sbjct: 62 RNPQTGEEIEIAASKIPAFKPGKALKDAIK 91
>gi|258592128|emb|CBE68433.1| Integration host factor beta-subunit (IHF-beta) [NC10 bacterium
'Dutch sediment']
Length = 107
Score = 94.8 bits (235), Expect = 4e-18, Method: Composition-based stats.
Identities = 38/94 (40%), Positives = 60/94 (63%), Gaps = 3/94 (3%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALAN--GGRVEIRGFGSFSVRKRAA 58
M K+ L+ +A + L +D E +V+ +LE + +ALA+ G+VE+RGFGSF R+R A
Sbjct: 15 MTKADLVELVAAQ-VYLTKRDTEVVVDTILESIAKALASEDDGKVELRGFGSFRTRQRRA 73
Query: 59 RLARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R R P + K + V K +PFF+ GK L++ ++S
Sbjct: 74 RQGRNPQSGKAVHVPSKRIPFFKPGKELRQIIDS 107
>gi|114776643|ref|ZP_01451686.1| DNA-binding protein HU [Mariprofundus ferrooxydans PV-1]
gi|114552729|gb|EAU55160.1| DNA-binding protein HU [Mariprofundus ferrooxydans PV-1]
Length = 102
Score = 94.8 bits (235), Expect = 4e-18, Method: Composition-based stats.
Identities = 31/92 (33%), Positives = 45/92 (48%), Gaps = 1/92 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K++LI +A + L+ V + + L++GG V + GFG FSV RAAR
Sbjct: 1 MNKTNLINHVA-SSAGLSKSAAGDAVEAAIGGIINVLSDGGTVSLVGFGRFSVIARAART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
AR P + I V P F+ K LK+ +
Sbjct: 60 ARNPRTGETIEVAASNAPIFKPSKALKDAVKQ 91
>gi|83720646|ref|YP_443105.1| integration host factor subunit alpha [Burkholderia thailandensis
E264]
gi|167582112|ref|ZP_02374986.1| integration host factor subunit alpha [Burkholderia thailandensis
TXDOH]
gi|167620270|ref|ZP_02388901.1| integration host factor subunit alpha [Burkholderia thailandensis
Bt4]
gi|257139334|ref|ZP_05587596.1| integration host factor subunit alpha [Burkholderia thailandensis
E264]
gi|83654471|gb|ABC38534.1| integration host factor, alpha subunit [Burkholderia thailandensis
E264]
Length = 134
Score = 94.8 bits (235), Expect = 4e-18, Method: Composition-based stats.
Identities = 25/91 (27%), Positives = 44/91 (48%), Gaps = 1/91 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ L + + LN ++ + +V E + AL NG V++ GFG+F +R + R
Sbjct: 37 TKAELAELLFD-SVGLNKREAKDMVEAFFEVIRDALENGESVKLSGFGNFQLRDKPQRPG 95
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P + I + + V F A + LK + +
Sbjct: 96 RNPKTGEAIPIAARRVVTFHASQKLKALVEN 126
>gi|53719552|ref|YP_108538.1| integration host factor subunit alpha [Burkholderia pseudomallei
K96243]
gi|81690335|sp|Q63TM8|IHFA_BURPS RecName: Full=Integration host factor subunit alpha;
Short=IHF-alpha
gi|52209966|emb|CAH35938.1| integration host factor alpha-subunit [Burkholderia pseudomallei
K96243]
Length = 115
Score = 94.8 bits (235), Expect = 4e-18, Method: Composition-based stats.
Identities = 25/91 (27%), Positives = 44/91 (48%), Gaps = 1/91 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ L + + LN ++ + +V E + AL NG V++ GFG+F +R + R
Sbjct: 18 TKAELAELLFD-SVGLNKREAKDMVEAFFEVIRDALENGESVKLSGFGNFQLRDKPQRPG 76
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P + I + + V F A + LK + +
Sbjct: 77 RNPKTGEAIPIAARRVVTFHASQKLKALVEN 107
>gi|148653384|ref|YP_001280477.1| histone family protein DNA-binding protein [Psychrobacter sp.
PRwf-1]
gi|148572468|gb|ABQ94527.1| histone family protein DNA-binding protein [Psychrobacter sp.
PRwf-1]
Length = 99
Score = 94.8 bits (235), Expect = 4e-18, Method: Composition-based stats.
Identities = 32/93 (34%), Positives = 54/93 (58%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
+ KS LI +A + + DV+ V +LE +++ L + R+E+RGFG+F + R AR
Sbjct: 5 INKSDLIQDVAARCDYMADSDVDNAVREILELLSEKLISNNRIEVRGFGTFCLHHREARQ 64
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSP 93
R P +++ V +K +P F+ GK L+E +N
Sbjct: 65 GRNPKTGEMVLVPQKAIPHFKPGKALREGVNHK 97
>gi|253581050|ref|ZP_04858311.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
gi|251847713|gb|EES75682.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
Length = 92
Score = 94.8 bits (235), Expect = 4e-18, Method: Composition-based stats.
Identities = 33/93 (35%), Positives = 58/93 (62%), Gaps = 1/93 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ L+ +AK+ L+ +DVE ++ ++ +++ L NGG++++ GFG+F V +RAAR
Sbjct: 1 MNKTELVAAMAKET-NLSKKDVEDVLKSFVDVVSKELKNGGKIQLVGFGTFEVSERAARE 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSP 93
R P + + +E P F+AGK LK+ +N
Sbjct: 60 GRNPQTGETMKIEASKSPKFKAGKALKDMVNGK 92
>gi|197117663|ref|YP_002138090.1| histone-like protein [Geobacter bemidjiensis Bem]
gi|197087023|gb|ACH38294.1| histone-like protein [Geobacter bemidjiensis Bem]
Length = 91
Score = 94.8 bits (235), Expect = 4e-18, Method: Composition-based stats.
Identities = 35/92 (38%), Positives = 53/92 (57%), Gaps = 1/92 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ L+ IA++ +L D EK + +L+ +T LA G +V + GFG+FSV +RAAR
Sbjct: 1 MNKAELVSAIAEE-AQLTKVDAEKSLMGILDALTNCLATGDKVTLVGFGTFSVAERAART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
+ P K I + P F+ G LK+ +NS
Sbjct: 60 GQNPQTGKKIEIAASSAPKFKPGNTLKDLVNS 91
>gi|91788925|ref|YP_549877.1| nucleoid protein Hbs [Polaromonas sp. JS666]
gi|91698150|gb|ABE44979.1| bacterial nucleoid protein Hbs [Polaromonas sp. JS666]
Length = 90
Score = 94.8 bits (235), Expect = 4e-18, Method: Composition-based stats.
Identities = 34/91 (37%), Positives = 48/91 (52%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI IA K+ ++ + + + + L GG V + GFG+F+V KRAAR
Sbjct: 1 MNKTELIEHIA-KHADISKAAATRALESTIGAVKTTLKKGGSVSLVGFGTFAVGKRAART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P I ++ VP FR GK LK+ LN
Sbjct: 60 GRNPRTGDAIKIKAAKVPKFRPGKALKDALN 90
>gi|303326015|ref|ZP_07356458.1| DNA-binding protein HU [Desulfovibrio sp. 3_1_syn3]
gi|302863931|gb|EFL86862.1| DNA-binding protein HU [Desulfovibrio sp. 3_1_syn3]
Length = 91
Score = 94.8 bits (235), Expect = 4e-18, Method: Composition-based stats.
Identities = 31/91 (34%), Positives = 45/91 (49%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ L+ I K E+ ++ ++ + +ALA+G V GFGSF V RAAR
Sbjct: 1 MTKAELVEKIHAKAGLPTKAKAEEALDAVVASLREALADGESVTFTGFGSFKVVARAARK 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P K I++ V F GK LK+ +
Sbjct: 61 GRNPRTGKEITIPASKVAKFTPGKGLKDAIK 91
>gi|218885604|ref|YP_002434925.1| histone family protein DNA-binding protein [Desulfovibrio
vulgaris str. 'Miyazaki F']
gi|218756558|gb|ACL07457.1| histone family protein DNA-binding protein [Desulfovibrio
vulgaris str. 'Miyazaki F']
Length = 90
Score = 94.8 bits (235), Expect = 4e-18, Method: Composition-based stats.
Identities = 32/91 (35%), Positives = 46/91 (50%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ L+ IA K L E+ +N L+ + ALA G++ + GFG+F+V R AR
Sbjct: 1 MTKADLVDKIAAK-ANLTKASAERSLNAFLDAVKDALAAEGKLTLTGFGTFAVEDRQARK 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P I + V FR GK LK+ +
Sbjct: 60 GRNPRTGAEIKIPASKVVKFRPGKTLKDSIK 90
>gi|300703884|ref|YP_003745486.1| integration host factor (ihf) subunit alpha [Ralstonia solanacearum
CFBP2957]
gi|299071547|emb|CBJ42871.1| integration host factor (IHF), alpha subunit [Ralstonia
solanacearum CFBP2957]
Length = 140
Score = 94.8 bits (235), Expect = 4e-18, Method: Composition-based stats.
Identities = 23/89 (25%), Positives = 45/89 (50%), Gaps = 1/89 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ L + ++ LN ++ + +V + + +AL G V++ GFG+F +R + R
Sbjct: 41 TKAELAEMLFEQ-VGLNKRESKDMVEAFFDVIREALEQGDSVKLSGFGNFQLRDKPQRPG 99
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P ++I + + V F A + LK +
Sbjct: 100 RNPKTGEIIPITARRVVTFHASQKLKALV 128
>gi|254453509|ref|ZP_05066946.1| integration host factor, beta subunit [Octadecabacter antarcticus
238]
gi|254455028|ref|ZP_05068464.1| integration host factor, beta subunit [Octadecabacter antarcticus
238]
gi|198263730|gb|EDY88001.1| integration host factor, beta subunit [Octadecabacter antarcticus
238]
gi|198267915|gb|EDY92185.1| integration host factor, beta subunit [Octadecabacter antarcticus
238]
Length = 95
Score = 94.8 bits (235), Expect = 4e-18, Method: Composition-based stats.
Identities = 40/94 (42%), Positives = 60/94 (63%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
MI+S L IA +N L ++ +V+ + E +T AL G RVEIRGFG+FS R+R R+
Sbjct: 2 MIRSELYAKIAAENRHLMHEQAVAVVDTIFETITAALERGNRVEIRGFGAFSCRQREGRI 61
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSPD 94
R P + V K++P+F+ GK +++RLN+PD
Sbjct: 62 GRNPKNGASVDVAPKVIPWFKLGKVIRDRLNTPD 95
>gi|197286600|ref|YP_002152472.1| DNA-binding protein HU-alpha (HU-2) [Proteus mirabilis HI4320]
gi|226328707|ref|ZP_03804225.1| hypothetical protein PROPEN_02602 [Proteus penneri ATCC 35198]
gi|227355207|ref|ZP_03839616.1| DNA-binding protein HU-alpha (HU-2) [Proteus mirabilis ATCC
29906]
gi|194684087|emb|CAR45470.1| DNA-binding protein HU-alpha (HU-2) [Proteus mirabilis HI4320]
gi|225201893|gb|EEG84247.1| hypothetical protein PROPEN_02602 [Proteus penneri ATCC 35198]
gi|227164716|gb|EEI49570.1| DNA-binding protein HU-alpha (HU-2) [Proteus mirabilis ATCC
29906]
Length = 90
Score = 94.8 bits (235), Expect = 4e-18, Method: Composition-based stats.
Identities = 31/91 (34%), Positives = 46/91 (50%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ L ++A+K L + + ++ +T AL G V++ GFG+F V RA R
Sbjct: 1 MNKAELTESVAEK-ADLTKTQAKAAIEAFIDSVTGALKEGDSVQLVGFGTFKVNHRAERT 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P K I + VP F AGK LK+ +
Sbjct: 60 GRNPQTGKEIKIAAANVPAFTAGKALKDAVK 90
>gi|160898320|ref|YP_001563902.1| histone family protein DNA-binding protein [Delftia acidovorans
SPH-1]
gi|160363904|gb|ABX35517.1| histone family protein DNA-binding protein [Delftia acidovorans
SPH-1]
Length = 90
Score = 94.5 bits (234), Expect = 4e-18, Method: Composition-based stats.
Identities = 35/91 (38%), Positives = 51/91 (56%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI IA N ++ + ++ +E + + L GG V + GFG+F+V KRAAR
Sbjct: 1 MNKTELIEHIAN-NADISKAAAARALDSTIEAVKKTLKKGGTVSLVGFGTFAVGKRAART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + I ++ VP FR GK LK+ LN
Sbjct: 60 GRNPRTGETIKIKAAKVPKFRPGKALKDALN 90
>gi|159026304|emb|CAO88881.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
Length = 94
Score = 94.5 bits (234), Expect = 4e-18, Method: Composition-based stats.
Identities = 30/90 (33%), Positives = 46/90 (51%), Gaps = 1/90 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K LI IA K + + + ++ +E + A++ G +V + GFGSF R+R AR
Sbjct: 1 MNKGELIDQIALK-ASVTKKQADAVLTAAIETIIDAVSEGDKVTLVGFGSFEARERQARE 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P + + VP F AGK K+R+
Sbjct: 60 GRNPKTGDKMEIPATRVPAFSAGKLFKDRV 89
>gi|254178583|ref|ZP_04885238.1| integration host factor alpha subunit [Burkholderia mallei ATCC
10399]
gi|160699622|gb|EDP89592.1| integration host factor alpha subunit [Burkholderia mallei ATCC
10399]
Length = 115
Score = 94.5 bits (234), Expect = 4e-18, Method: Composition-based stats.
Identities = 25/91 (27%), Positives = 44/91 (48%), Gaps = 1/91 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ L + + LN ++ + +V E + AL NG V++ GFG+F +R + R
Sbjct: 18 TKAELAELLFD-SVGLNKREAKDMVEAFFEVIRDALENGESVKLSGFGNFQLRDKPQRPG 76
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P + I + + V F A + LK + +
Sbjct: 77 RNPKTGEAIPIAARRVVTFHASQKLKALVEN 107
>gi|326202457|ref|ZP_08192326.1| histone family protein DNA-binding protein [Clostridium
papyrosolvens DSM 2782]
gi|325987575|gb|EGD48402.1| histone family protein DNA-binding protein [Clostridium
papyrosolvens DSM 2782]
Length = 91
Score = 94.5 bits (234), Expect = 4e-18, Method: Composition-based stats.
Identities = 39/92 (42%), Positives = 62/92 (67%), Gaps = 1/92 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS L+ +A+K+ L+ +D +K +N +LE + +AL +G +V++ GFGSF V++RAAR
Sbjct: 1 MNKSELVDKMAEKS-GLSKKDSDKALNAMLESVEEALTSGDKVQLIGFGSFEVKQRAARK 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P + I++ E P F+AGK+LKE +N
Sbjct: 60 GRNPQTMEEINIPESKAPVFKAGKDLKEMINK 91
>gi|325279829|ref|YP_004252371.1| histone family protein DNA-binding protein [Odoribacter
splanchnicus DSM 20712]
gi|324311638|gb|ADY32191.1| histone family protein DNA-binding protein [Odoribacter
splanchnicus DSM 20712]
Length = 89
Score = 94.5 bits (234), Expect = 4e-18, Method: Composition-based stats.
Identities = 36/89 (40%), Positives = 51/89 (57%), Gaps = 1/89 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI IA+K L D +K + +E + +AL G +V + GFGSFSV +R+AR
Sbjct: 1 MNKAQLIDAIAEK-AGLTKADSKKALEAFVETVGEALKGGDKVALIGFGSFSVSERSARS 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKER 89
R P K I++ K V F+AG L E+
Sbjct: 60 GRNPQTGKTITIPAKKVVKFKAGAELAEK 88
>gi|254491603|ref|ZP_05104782.1| integration host factor, alpha subunit [Methylophaga thiooxidans
DMS010]
gi|224463081|gb|EEF79351.1| integration host factor, alpha subunit [Methylophaga thiooxydans
DMS010]
Length = 98
Score = 94.5 bits (234), Expect = 4e-18, Method: Composition-based stats.
Identities = 27/95 (28%), Positives = 52/95 (54%), Gaps = 1/95 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ + + + N ++ +++V M EE+ AL NG +V++ GFG+F +R ++ R
Sbjct: 4 TKADMTEQLYDEL-GFNKREAKELVEMFFEEIRSALENGEQVKLSGFGNFELRDKSERPG 62
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDST 96
R P + I + + V FR G+ LK R+++ +
Sbjct: 63 RNPKTGEEIPISARRVVTFRPGQKLKARVDNYAGS 97
>gi|118478949|ref|YP_896100.1| HU family DNA-binding protein [Bacillus thuringiensis str. Al
Hakam]
gi|228902230|ref|ZP_04066390.1| DNA-binding protein HU [Bacillus thuringiensis IBL 4222]
gi|228909551|ref|ZP_04073374.1| DNA-binding protein HU [Bacillus thuringiensis IBL 200]
gi|228916359|ref|ZP_04079928.1| DNA-binding protein HU [Bacillus thuringiensis serovar pulsiensis
BGSC 4CC1]
gi|228935026|ref|ZP_04097856.1| DNA-binding protein HU [Bacillus thuringiensis serovar
andalousiensis BGSC 4AW1]
gi|228940802|ref|ZP_04103362.1| DNA-binding protein HU [Bacillus thuringiensis serovar berliner
ATCC 10792]
gi|228947391|ref|ZP_04109682.1| DNA-binding protein HU [Bacillus thuringiensis serovar monterrey
BGSC 4AJ1]
gi|228954004|ref|ZP_04116033.1| DNA-binding protein HU [Bacillus thuringiensis serovar kurstaki
str. T03a001]
gi|228959936|ref|ZP_04121601.1| DNA-binding protein HU [Bacillus thuringiensis serovar pakistani
str. T13001]
gi|228966650|ref|ZP_04127696.1| DNA-binding protein HU [Bacillus thuringiensis serovar sotto str.
T04001]
gi|228973722|ref|ZP_04134300.1| DNA-binding protein HU [Bacillus thuringiensis serovar
thuringiensis str. T01001]
gi|228980278|ref|ZP_04140589.1| DNA-binding protein HU [Bacillus thuringiensis Bt407]
gi|228986865|ref|ZP_04146992.1| DNA-binding protein HU [Bacillus thuringiensis serovar
tochigiensis BGSC 4Y1]
gi|229031353|ref|ZP_04187356.1| DNA-binding protein HU [Bacillus cereus AH1271]
gi|229047408|ref|ZP_04193002.1| DNA-binding protein HU [Bacillus cereus AH676]
gi|229071224|ref|ZP_04204448.1| DNA-binding protein HU [Bacillus cereus F65185]
gi|229080981|ref|ZP_04213494.1| DNA-binding protein HU [Bacillus cereus Rock4-2]
gi|229092762|ref|ZP_04223900.1| DNA-binding protein HU [Bacillus cereus Rock3-42]
gi|229111199|ref|ZP_04240753.1| DNA-binding protein HU [Bacillus cereus Rock1-15]
gi|229123244|ref|ZP_04252448.1| DNA-binding protein HU [Bacillus cereus 95/8201]
gi|229129004|ref|ZP_04257977.1| DNA-binding protein HU [Bacillus cereus BDRD-Cer4]
gi|229140371|ref|ZP_04268926.1| DNA-binding protein HU [Bacillus cereus BDRD-ST26]
gi|229146298|ref|ZP_04274670.1| DNA-binding protein HU [Bacillus cereus BDRD-ST24]
gi|229151928|ref|ZP_04280124.1| DNA-binding protein HU [Bacillus cereus m1550]
gi|229180004|ref|ZP_04307348.1| DNA-binding protein HU [Bacillus cereus 172560W]
gi|229185956|ref|ZP_04313127.1| DNA-binding protein HU [Bacillus cereus BGSC 6E1]
gi|229191850|ref|ZP_04318821.1| DNA-binding protein HU [Bacillus cereus ATCC 10876]
gi|229197835|ref|ZP_04324551.1| DNA-binding protein HU [Bacillus cereus m1293]
gi|118418174|gb|ABK86593.1| HU family DNA-binding protein [Bacillus thuringiensis str. Al
Hakam]
gi|228585553|gb|EEK43655.1| DNA-binding protein HU [Bacillus cereus m1293]
gi|228591612|gb|EEK49460.1| DNA-binding protein HU [Bacillus cereus ATCC 10876]
gi|228597508|gb|EEK55157.1| DNA-binding protein HU [Bacillus cereus BGSC 6E1]
gi|228603213|gb|EEK60690.1| DNA-binding protein HU [Bacillus cereus 172560W]
gi|228631483|gb|EEK88116.1| DNA-binding protein HU [Bacillus cereus m1550]
gi|228637172|gb|EEK93630.1| DNA-binding protein HU [Bacillus cereus BDRD-ST24]
gi|228642932|gb|EEK99208.1| DNA-binding protein HU [Bacillus cereus BDRD-ST26]
gi|228654241|gb|EEL10106.1| DNA-binding protein HU [Bacillus cereus BDRD-Cer4]
gi|228660020|gb|EEL15656.1| DNA-binding protein HU [Bacillus cereus 95/8201]
gi|228672193|gb|EEL27483.1| DNA-binding protein HU [Bacillus cereus Rock1-15]
gi|228690560|gb|EEL44341.1| DNA-binding protein HU [Bacillus cereus Rock3-42]
gi|228702295|gb|EEL54768.1| DNA-binding protein HU [Bacillus cereus Rock4-2]
gi|228711845|gb|EEL63796.1| DNA-binding protein HU [Bacillus cereus F65185]
gi|228723937|gb|EEL75288.1| DNA-binding protein HU [Bacillus cereus AH676]
gi|228729963|gb|EEL80940.1| DNA-binding protein HU [Bacillus cereus AH1271]
gi|228772814|gb|EEM21253.1| DNA-binding protein HU [Bacillus thuringiensis serovar
tochigiensis BGSC 4Y1]
gi|228779383|gb|EEM27639.1| DNA-binding protein HU [Bacillus thuringiensis Bt407]
gi|228785968|gb|EEM33969.1| DNA-binding protein HU [Bacillus thuringiensis serovar
thuringiensis str. T01001]
gi|228793026|gb|EEM40582.1| DNA-binding protein HU [Bacillus thuringiensis serovar sotto str.
T04001]
gi|228799679|gb|EEM46631.1| DNA-binding protein HU [Bacillus thuringiensis serovar pakistani
str. T13001]
gi|228805570|gb|EEM52160.1| DNA-binding protein HU [Bacillus thuringiensis serovar kurstaki
str. T03a001]
gi|228812244|gb|EEM58574.1| DNA-binding protein HU [Bacillus thuringiensis serovar monterrey
BGSC 4AJ1]
gi|228818816|gb|EEM64881.1| DNA-binding protein HU [Bacillus thuringiensis serovar berliner
ATCC 10792]
gi|228824596|gb|EEM70398.1| DNA-binding protein HU [Bacillus thuringiensis serovar
andalousiensis BGSC 4AW1]
gi|228843269|gb|EEM88348.1| DNA-binding protein HU [Bacillus thuringiensis serovar pulsiensis
BGSC 4CC1]
gi|228849840|gb|EEM94671.1| DNA-binding protein HU [Bacillus thuringiensis IBL 200]
gi|228857345|gb|EEN01845.1| DNA-binding protein HU [Bacillus thuringiensis IBL 4222]
Length = 93
Score = 94.5 bits (234), Expect = 4e-18, Method: Composition-based stats.
Identities = 34/91 (37%), Positives = 56/91 (61%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI +A +N +++ ++ +V ++E +T LA G +V++ GFG+F VR+RAAR
Sbjct: 4 MNKTELIKNVA-QNAEISQKEATVVVQTVVESITNTLAAGEKVQLIGFGTFEVRERAART 62
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + + + VP F+AGK LKE +
Sbjct: 63 GRNPQTGEEMQIAASKVPAFKAGKELKEAVK 93
>gi|148381474|ref|YP_001256015.1| DNA-binding protein HU [Clostridium botulinum A str. ATCC 3502]
gi|153931858|ref|YP_001385849.1| DNA-binding protein HU [Clostridium botulinum A str. ATCC 19397]
gi|153937038|ref|YP_001389256.1| DNA-binding protein HU [Clostridium botulinum A str. Hall]
gi|153939802|ref|YP_001392888.1| DNA-binding protein HU [Clostridium botulinum F str. Langeland]
gi|168181003|ref|ZP_02615667.1| DNA-binding protein HU [Clostridium botulinum NCTC 2916]
gi|170755876|ref|YP_001783174.1| DNA-binding protein HU [Clostridium botulinum B1 str. Okra]
gi|170761658|ref|YP_001788874.1| DNA-binding protein HU [Clostridium botulinum A3 str. Loch Maree]
gi|226950990|ref|YP_002806081.1| DNA-binding protein HU [Clostridium botulinum A2 str. Kyoto]
gi|148290958|emb|CAL85094.1| DNA-binding protein HU [Clostridium botulinum A str. ATCC 3502]
gi|152927902|gb|ABS33402.1| DNA-binding protein HU [Clostridium botulinum A str. ATCC 19397]
gi|152932952|gb|ABS38451.1| DNA-binding protein HU [Clostridium botulinum A str. Hall]
gi|152935698|gb|ABS41196.1| DNA-binding protein HU [Clostridium botulinum F str. Langeland]
gi|169121088|gb|ACA44924.1| DNA-binding protein HU [Clostridium botulinum B1 str. Okra]
gi|169408647|gb|ACA57058.1| DNA-binding protein HU [Clostridium botulinum A3 str. Loch Maree]
gi|182668057|gb|EDT80036.1| DNA-binding protein HU [Clostridium botulinum NCTC 2916]
gi|226841522|gb|ACO84188.1| DNA-binding protein HU [Clostridium botulinum A2 str. Kyoto]
gi|295320865|gb|ADG01243.1| DNA-binding protein HU [Clostridium botulinum F str. 230613]
gi|322807859|emb|CBZ05434.1| DNA-binding protein HBsu [Clostridium botulinum H04402 065]
Length = 92
Score = 94.5 bits (234), Expect = 4e-18, Method: Composition-based stats.
Identities = 36/93 (38%), Positives = 59/93 (63%), Gaps = 1/93 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI ++A+K+ KL +D E + +E + +AL G +V++ GFG+F R+RA R+
Sbjct: 1 MNKSELITSMAEKS-KLTKKDAETALKAFIESVEEALEGGEKVQLVGFGTFETRERAERV 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSP 93
R P ++ I++ + P F+AGK LKE++N
Sbjct: 60 GRNPRTKEEITIPASIAPVFKAGKELKEKVNKK 92
>gi|218777883|ref|YP_002429201.1| histone family protein DNA-binding protein [Desulfatibacillum
alkenivorans AK-01]
gi|218759267|gb|ACL01733.1| histone family protein DNA-binding protein [Desulfatibacillum
alkenivorans AK-01]
Length = 91
Score = 94.5 bits (234), Expect = 4e-18, Method: Composition-based stats.
Identities = 34/91 (37%), Positives = 51/91 (56%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K L+ T+ + ++ D KIV + + M ALA G RVEIRG SF V++ +
Sbjct: 1 MNKLELVSTLKNR-AGISKTDAAKIVQIFFDSMADALAEGERVEIRGLCSFFVKEYKSYT 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + + + K +PFF+ GK LKER++
Sbjct: 60 GRNPKTGEPVKISPKKLPFFKCGKELKERVD 90
>gi|326803714|ref|YP_004321532.1| DNA-binding protein HU-beta [Aerococcus urinae ACS-120-V-Col10a]
gi|326651370|gb|AEA01553.1| DNA-binding protein HU-beta [Aerococcus urinae ACS-120-V-Col10a]
Length = 92
Score = 94.5 bits (234), Expect = 4e-18, Method: Composition-based stats.
Identities = 31/90 (34%), Positives = 53/90 (58%), Gaps = 1/90 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ L+ +A+ + + ++V+ +V+ + + LA+G V+I GFG+F VR+RAAR
Sbjct: 3 NKADLVQKVAESTGE-SKKNVQPVVDAVFSSIENFLADGENVQIIGFGNFEVRERAARKG 61
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + I + VP F+AGK LK+ +
Sbjct: 62 RNPQTGEEIQIPASKVPAFKAGKGLKDVVK 91
>gi|291551159|emb|CBL27421.1| Bacterial nucleoid DNA-binding protein [Ruminococcus torques
L2-14]
Length = 90
Score = 94.5 bits (234), Expect = 4e-18, Method: Composition-based stats.
Identities = 32/91 (35%), Positives = 55/91 (60%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ I +A+K +++ +D EK + ++ +T+ L G +V++ GFG+F V +RAAR
Sbjct: 1 MNKTEFIAAVAEK-AEISKKDSEKALKAFVDVVTEQLKAGDKVQLVGFGTFEVSERAARE 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P K +++ P F+AGK LK+ +N
Sbjct: 60 GRNPQTGKTMTIAACKAPKFKAGKALKDAIN 90
>gi|119776290|ref|YP_929030.1| histone-like DNA-binding protein [Shewanella amazonensis SB2B]
gi|119768790|gb|ABM01361.1| histone-like DNA-binding protein [Shewanella amazonensis SB2B]
Length = 90
Score = 94.5 bits (234), Expect = 4e-18, Method: Composition-based stats.
Identities = 30/91 (32%), Positives = 48/91 (52%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M ++ LI IA+ + L + + + E +T A+ +G ++ I GFGSF RA R
Sbjct: 1 MNRTELIAKIAE-SADLTKAEAGRALKSFEEAVTAAMKDGDKISIVGFGSFETSTRAERT 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P K I + +P F+AGK L++ +N
Sbjct: 60 GRNPQTGKEIKIPAATIPKFKAGKALRDSVN 90
>gi|302344119|ref|YP_003808648.1| histone family protein DNA-binding protein [Desulfarculus baarsii
DSM 2075]
gi|301640732|gb|ADK86054.1| histone family protein DNA-binding protein [Desulfarculus baarsii
DSM 2075]
Length = 92
Score = 94.5 bits (234), Expect = 4e-18, Method: Composition-based stats.
Identities = 39/93 (41%), Positives = 53/93 (56%), Gaps = 1/93 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI +A K L + E +VN L + +AL G RVEIRGFGSF V+
Sbjct: 1 MNKSQLIEALA-KAENLTIKKAEMVVNTLFGAIEEALVQGDRVEIRGFGSFKVKNYDGYQ 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSP 93
R P ++I V +K +PFF+ GK LK+R++
Sbjct: 60 GRNPKTGEIIQVGQKKLPFFKVGKELKDRVDGK 92
>gi|238927161|ref|ZP_04658921.1| DNA-binding protein HU [Selenomonas flueggei ATCC 43531]
gi|238884943|gb|EEQ48581.1| DNA-binding protein HU [Selenomonas flueggei ATCC 43531]
Length = 100
Score = 94.5 bits (234), Expect = 4e-18, Method: Composition-based stats.
Identities = 36/90 (40%), Positives = 52/90 (57%), Gaps = 1/90 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K L+ +A++ L +D EK VN L E + AL+ G +V++ GFG+F V+ R AR
Sbjct: 12 NKQELVANVAEQ-ASLTKKDAEKAVNALFETIKGALSEGDKVQLIGFGTFEVKDRKARKG 70
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P KVI + P F+AGK LK+ +N
Sbjct: 71 RNPQTGKVIEIAASRNPVFKAGKALKDSVN 100
>gi|15600541|ref|NP_254035.1| DNA-binding protein [Pseudomonas aeruginosa PAO1]
gi|107104450|ref|ZP_01368368.1| hypothetical protein PaerPA_01005527 [Pseudomonas aeruginosa
PACS2]
gi|116053495|ref|YP_793822.1| HU family DNA-binding protein [Pseudomonas aeruginosa UCBPP-PA14]
gi|218894451|ref|YP_002443321.1| putative DNA-binding protein [Pseudomonas aeruginosa LESB58]
gi|254237960|ref|ZP_04931283.1| hypothetical protein PACG_04070 [Pseudomonas aeruginosa C3719]
gi|254243767|ref|ZP_04937089.1| hypothetical protein PA2G_04593 [Pseudomonas aeruginosa 2192]
gi|296392208|ref|ZP_06881683.1| putative DNA-binding protein [Pseudomonas aeruginosa PAb1]
gi|313106776|ref|ZP_07792992.1| putative DNA-binding protein [Pseudomonas aeruginosa 39016]
gi|14194645|sp|Q9HTL0|DBHA_PSEAE RecName: Full=DNA-binding protein HU-alpha
gi|9951668|gb|AAG08733.1|AE004947_3 probable DNA-binding protein [Pseudomonas aeruginosa PAO1]
gi|115588716|gb|ABJ14731.1| putative DNA-binding protein HU family [Pseudomonas aeruginosa
UCBPP-PA14]
gi|126169891|gb|EAZ55402.1| hypothetical protein PACG_04070 [Pseudomonas aeruginosa C3719]
gi|126197145|gb|EAZ61208.1| hypothetical protein PA2G_04593 [Pseudomonas aeruginosa 2192]
gi|218774680|emb|CAW30497.1| probable DNA-binding protein [Pseudomonas aeruginosa LESB58]
gi|310879494|gb|EFQ38088.1| putative DNA-binding protein [Pseudomonas aeruginosa 39016]
Length = 90
Score = 94.5 bits (234), Expect = 4e-18, Method: Composition-based stats.
Identities = 29/91 (31%), Positives = 47/91 (51%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K L IA+K L + +++N LL+E+T AL V + GFG+F R R AR
Sbjct: 1 MRKPELAAAIAEK-ADLTKEQANRVLNALLDEITGALNRKDSVTLVGFGTFLQRHRGART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
+ P + + ++ F+ GK L++ +N
Sbjct: 60 GKNPQTGQPVKIKASNTVAFKPGKALRDAVN 90
>gi|229168463|ref|ZP_04296186.1| DNA-binding protein HU [Bacillus cereus AH621]
gi|228614869|gb|EEK71971.1| DNA-binding protein HU [Bacillus cereus AH621]
Length = 93
Score = 94.5 bits (234), Expect = 4e-18, Method: Composition-based stats.
Identities = 33/91 (36%), Positives = 57/91 (62%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI +A +N +++ ++ ++ ++E +T +LA G +V++ GFG+F VR+RAAR
Sbjct: 4 MNKTELIKNVA-QNAEISQKEATVVLQTVVESITNSLAAGEKVQLIGFGTFEVRERAART 62
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + + + VP F+AGK LKE +
Sbjct: 63 GRNPQTGEEMQIAASKVPAFKAGKELKEAVK 93
>gi|300865210|ref|ZP_07110027.1| nucleoid protein Hbs [Oscillatoria sp. PCC 6506]
gi|300336775|emb|CBN55177.1| nucleoid protein Hbs [Oscillatoria sp. PCC 6506]
Length = 95
Score = 94.5 bits (234), Expect = 4e-18, Method: Composition-based stats.
Identities = 29/90 (32%), Positives = 51/90 (56%), Gaps = 1/90 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K L+ +A+K + + + +++ LE + +A+++G +V + GFGSF R+R AR
Sbjct: 1 MNKGELVDAVAEK-ASVTKKQADAVLSAALESIMEAVSDGDKVTLVGFGSFESRERKARE 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P + + + VP F AGK K+R+
Sbjct: 60 GRNPKTGEKMEIPATKVPAFSAGKLFKDRV 89
>gi|158334333|ref|YP_001515505.1| DNA-binding protein HU [Acaryochloris marina MBIC11017]
gi|158304574|gb|ABW26191.1| DNA-binding protein HU [Acaryochloris marina MBIC11017]
Length = 91
Score = 94.5 bits (234), Expect = 4e-18, Method: Composition-based stats.
Identities = 28/90 (31%), Positives = 47/90 (52%), Gaps = 1/90 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K L+ IA K + + + ++ ++ + A+++G +V + GFGSF R R AR
Sbjct: 1 MNKGELVDAIADKT-GVTKKQADVTLSAAVDVIIDAVSHGDKVTLVGFGSFEPRDRKARN 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P K + + VP F AGK K+++
Sbjct: 60 GRNPQTGKKLKIPATRVPAFSAGKLFKDKV 89
>gi|332703826|ref|ZP_08423914.1| histone family protein DNA-binding protein [Desulfovibrio
africanus str. Walvis Bay]
gi|332553975|gb|EGJ51019.1| histone family protein DNA-binding protein [Desulfovibrio
africanus str. Walvis Bay]
Length = 91
Score = 94.5 bits (234), Expect = 5e-18, Method: Composition-based stats.
Identities = 40/92 (43%), Positives = 56/92 (60%), Gaps = 1/92 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI T+A+ + ++ + KIVN ++ + +L G RVEIRGFGSF +++
Sbjct: 1 MNKSELIKTLAE-DKDIHVDEASKIVNAFVDSIKDSLLQGERVEIRGFGSFKIKEYKGYT 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P ++ VE K +PFFR GK LKE LNS
Sbjct: 60 GRNPKTGDIVDVEPKRLPFFRPGKELKEFLNS 91
>gi|229174387|ref|ZP_04301919.1| DNA-binding protein HU [Bacillus cereus MM3]
gi|228608947|gb|EEK66237.1| DNA-binding protein HU [Bacillus cereus MM3]
Length = 93
Score = 94.5 bits (234), Expect = 5e-18, Method: Composition-based stats.
Identities = 33/91 (36%), Positives = 56/91 (61%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI +A +N +++ ++ ++ ++E +T LA G +V++ GFG+F VR+RAAR
Sbjct: 4 MNKTELIKNVA-QNAEISQKEATVVLQTVVESITNTLAAGEKVQLIGFGTFEVRERAART 62
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + + + VP F+AGK LKE +
Sbjct: 63 GRNPQTGEEMQIAASKVPAFKAGKELKEAVK 93
>gi|323519066|gb|ADX93447.1| nucleoid DNA-binding protein [Acinetobacter baumannii
TCDC-AB0715]
Length = 90
Score = 94.5 bits (234), Expect = 5e-18, Method: Composition-based stats.
Identities = 35/91 (38%), Positives = 50/91 (54%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI IA + L +N + +++ALA G V + GFG+FSV++RAAR
Sbjct: 1 MNKSELIKHIA-SSASLTQAQATAALNAVESGISKALAAGDDVALIGFGTFSVKERAART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + + + VP F+AGK LKE +
Sbjct: 60 GRNPKTGEELKIAAAKVPSFKAGKALKEAVK 90
>gi|258620637|ref|ZP_05715674.1| DNA-binding protein HU [Vibrio mimicus VM573]
gi|258624505|ref|ZP_05719449.1| DNA-binding protein HU [Vibrio mimicus VM603]
gi|262163814|ref|ZP_06031554.1| DNA-binding protein HU-alpha [Vibrio mimicus VM223]
gi|262172622|ref|ZP_06040300.1| DNA-binding protein HU-alpha [Vibrio mimicus MB-451]
gi|262404997|ref|ZP_06081549.1| DNA-binding protein HU-alpha [Vibrio sp. RC586]
gi|258583202|gb|EEW08007.1| DNA-binding protein HU [Vibrio mimicus VM603]
gi|258587152|gb|EEW11864.1| DNA-binding protein HU [Vibrio mimicus VM573]
gi|261893698|gb|EEY39684.1| DNA-binding protein HU-alpha [Vibrio mimicus MB-451]
gi|262027794|gb|EEY46459.1| DNA-binding protein HU-alpha [Vibrio mimicus VM223]
gi|262348836|gb|EEY97977.1| DNA-binding protein HU-alpha [Vibrio sp. RC586]
Length = 90
Score = 94.5 bits (234), Expect = 5e-18, Method: Composition-based stats.
Identities = 32/91 (35%), Positives = 46/91 (50%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI IA+K L + + L + AL G +V++ GFG+F V R+AR
Sbjct: 1 MNKTQLIDFIAEK-ADLTKAQAKAALEATLGAVEGALKEGDQVQLIGFGTFKVNHRSART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + I + VP F AGK LK+ +
Sbjct: 60 GRNPKTGEEIKIAAANVPAFVAGKALKDAIK 90
>gi|228949928|ref|ZP_04112122.1| DNA-binding protein HU [Bacillus thuringiensis serovar monterrey
BGSC 4AJ1]
gi|229060100|ref|ZP_04197470.1| DNA-binding protein HU [Bacillus cereus AH603]
gi|229082875|ref|ZP_04215299.1| DNA-binding protein HU [Bacillus cereus Rock4-2]
gi|228700413|gb|EEL52975.1| DNA-binding protein HU [Bacillus cereus Rock4-2]
gi|228719140|gb|EEL70750.1| DNA-binding protein HU [Bacillus cereus AH603]
gi|228809749|gb|EEM56176.1| DNA-binding protein HU [Bacillus thuringiensis serovar monterrey
BGSC 4AJ1]
Length = 93
Score = 94.5 bits (234), Expect = 5e-18, Method: Composition-based stats.
Identities = 36/91 (39%), Positives = 53/91 (58%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ L +A+K +L +D LL+ +T ALANG +V+I GFG+F VR+R+AR
Sbjct: 4 MNKTELTKVVAEK-AELTQKDAAAATQALLDTITNALANGEKVQILGFGTFEVRERSART 62
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + + + P F+AGK LKE +
Sbjct: 63 GRNPQTGEEMQIAASKAPAFKAGKELKEAVK 93
>gi|218679781|ref|ZP_03527678.1| integration host factor subunit beta [Rhizobium etli CIAT 894]
Length = 85
Score = 94.5 bits (234), Expect = 5e-18, Method: Composition-based stats.
Identities = 44/77 (57%), Positives = 56/77 (72%)
Query: 15 PKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLARAPLAQKVISVEE 74
P L ++DVE IVN +L+E+T ALA G RVE+RGFG+FSV+ R +R R P + VEE
Sbjct: 1 PHLYHRDVENIVNAVLDEITDALAAGNRVELRGFGAFSVKNRPSRSGRNPRTGDTVFVEE 60
Query: 75 KMVPFFRAGKNLKERLN 91
K VPFF+ GK L+ERLN
Sbjct: 61 KWVPFFKTGKELRERLN 77
>gi|153812530|ref|ZP_01965198.1| hypothetical protein RUMOBE_02929 [Ruminococcus obeum ATCC 29174]
gi|149831455|gb|EDM86543.1| hypothetical protein RUMOBE_02929 [Ruminococcus obeum ATCC 29174]
Length = 91
Score = 94.5 bits (234), Expect = 5e-18, Method: Composition-based stats.
Identities = 31/92 (33%), Positives = 53/92 (57%), Gaps = 1/92 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ L+ +AK+ L+ +DVE ++ + + L GG++++ GFG+F V +RAAR
Sbjct: 1 MNKTELVAAMAKET-NLSKKDVEAVLKSFTDVVASELKKGGKIQLVGFGTFEVSERAARE 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P + + + P F+AGK LK+ +N
Sbjct: 60 GRNPQTGETMKIAASKAPKFKAGKALKDMVNE 91
>gi|91775765|ref|YP_545521.1| histone-like DNA-binding protein [Methylobacillus flagellatus KT]
gi|91709752|gb|ABE49680.1| histone-like DNA-binding protein [Methylobacillus flagellatus KT]
Length = 91
Score = 94.5 bits (234), Expect = 5e-18, Method: Composition-based stats.
Identities = 34/90 (37%), Positives = 48/90 (53%), Gaps = 1/90 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
KS LI IA K+ L+ + ++ +T++L G V + GFG+F V KRAAR
Sbjct: 3 NKSELIEQIA-KSAGLSKAAAGRALDATTAAITKSLKKGELVTLIGFGTFYVGKRAARNG 61
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P I ++ P FRAGK LK+ +N
Sbjct: 62 RNPRTGATIKIKAANSPKFRAGKALKDAVN 91
>gi|300721652|ref|YP_003710927.1| DNA-binding protein HU-alpha [Xenorhabdus nematophila ATCC 19061]
gi|297628144|emb|CBJ88695.1| DNA-binding protein HU-alpha (HU-2), plays a role in DNA
replication and in rpo translation [Xenorhabdus
nematophila ATCC 19061]
Length = 90
Score = 94.5 bits (234), Expect = 5e-18, Method: Composition-based stats.
Identities = 32/91 (35%), Positives = 45/91 (49%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ L+ IA L + + L +T++L NG V++ GFG+F V RA R
Sbjct: 1 MNKTELVDAIAA-GADLTKTQAKAALESTLNAITESLKNGDAVQLVGFGTFKVNHRAERT 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P K I + VP F AGK LK+ +
Sbjct: 60 GRNPQTGKEIKIAAANVPAFSAGKALKDAVK 90
>gi|295424943|ref|ZP_06817655.1| DNA-binding protein HU [Lactobacillus amylolyticus DSM 11664]
gi|295065382|gb|EFG56278.1| DNA-binding protein HU [Lactobacillus amylolyticus DSM 11664]
Length = 94
Score = 94.5 bits (234), Expect = 5e-18, Method: Composition-based stats.
Identities = 33/91 (36%), Positives = 52/91 (57%), Gaps = 1/91 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ L+ IA+K ++ +D E ++ ++ + L G +V++ GFG+F VR RAAR
Sbjct: 5 NKAELVKEIAEKT-EMKKKDAEAVLESVISTIQDELVKGNKVQLIGFGTFEVRHRAARKG 63
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P K I++ VP F+ GK LKE +N
Sbjct: 64 RNPQTGKEITIPATQVPAFKPGKALKESVNK 94
>gi|290968877|ref|ZP_06560414.1| putative integration host factor, beta subunit [Megasphaera
genomosp. type_1 str. 28L]
gi|290781173|gb|EFD93764.1| putative integration host factor, beta subunit [Megasphaera
genomosp. type_1 str. 28L]
Length = 92
Score = 94.5 bits (234), Expect = 5e-18, Method: Composition-based stats.
Identities = 37/93 (39%), Positives = 56/93 (60%), Gaps = 1/93 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI +A K+ L +D EK V + E ++++L G +V+I GFG+F VR+R AR
Sbjct: 1 MNKTELIANVATKS-DLTKKDAEKAVKAVFESISESLTKGDKVQIIGFGTFEVRQRKARE 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSP 93
R P + I +E P F+AGK LK+ +N+
Sbjct: 60 GRNPRNNEPIQIEASKTPAFKAGKQLKDLVNNK 92
>gi|226199688|ref|ZP_03795241.1| integration host factor alpha subunit [Burkholderia pseudomallei
Pakistan 9]
gi|225928274|gb|EEH24308.1| integration host factor alpha subunit [Burkholderia pseudomallei
Pakistan 9]
Length = 131
Score = 94.5 bits (234), Expect = 5e-18, Method: Composition-based stats.
Identities = 25/91 (27%), Positives = 44/91 (48%), Gaps = 1/91 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ L + + LN ++ + +V E + AL NG V++ GFG+F +R + R
Sbjct: 34 TKAELAELLFD-SVGLNKREAKDMVEAFFEVIRDALENGESVKLSGFGNFQLRDKPQRPG 92
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P + I + + V F A + LK + +
Sbjct: 93 RNPKTGEAIPIAARRVVTFHASQKLKALVEN 123
>gi|46202642|ref|ZP_00208599.1| COG0776: Bacterial nucleoid DNA-binding protein [Magnetospirillum
magnetotacticum MS-1]
Length = 91
Score = 94.5 bits (234), Expect = 5e-18, Method: Composition-based stats.
Identities = 31/91 (34%), Positives = 46/91 (50%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ L+ +A+ D +K+ + + +T AL G V + GFGSFS+ RAA+
Sbjct: 1 MNKADLVSKVAE-LAGCTKADADKVTDAVFAAITSALKVGDEVRLVGFGSFSITNRAAKD 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P I + P F AGK LK+ +N
Sbjct: 60 GRNPRTGATIKIAASKAPKFSAGKALKDAVN 90
>gi|153854753|ref|ZP_01995987.1| hypothetical protein DORLON_01985 [Dorea longicatena DSM 13814]
gi|149752660|gb|EDM62591.1| hypothetical protein DORLON_01985 [Dorea longicatena DSM 13814]
Length = 91
Score = 94.5 bits (234), Expect = 5e-18, Method: Composition-based stats.
Identities = 31/92 (33%), Positives = 51/92 (55%), Gaps = 1/92 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI IA + +L+ +D EK + ++ +T+ L +V++ GFG+F V RA R
Sbjct: 1 MNKTELIAAIADQ-AELSKKDSEKALKAFIDVVTEELKKEHKVQVVGFGTFEVSMRAERE 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P + + + P F+AGK LK+ +N
Sbjct: 60 GRNPQTGETMKIAACKAPKFKAGKALKDAINE 91
>gi|153003612|ref|YP_001377937.1| histone family protein DNA-binding protein [Anaeromyxobacter sp.
Fw109-5]
gi|152027185|gb|ABS24953.1| histone family protein DNA-binding protein [Anaeromyxobacter sp.
Fw109-5]
Length = 126
Score = 94.5 bits (234), Expect = 5e-18, Method: Composition-based stats.
Identities = 32/95 (33%), Positives = 49/95 (51%), Gaps = 1/95 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M+KS LI + K + + E + + + M AL G +EIRG G+F V+
Sbjct: 1 MLKSDLINILVVKR-GVTQKQAESTIETIFDSMKDALCRGENIEIRGLGAFHVKHYDGYQ 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDS 95
R P +VI V+ K FR GK L++R+N P++
Sbjct: 60 GRNPKTGEVIPVKPKRGILFRTGKELRDRVNRPEA 94
>gi|117919001|ref|YP_868193.1| histone family protein DNA-binding protein [Shewanella sp. ANA-3]
gi|117611333|gb|ABK46787.1| histone family protein DNA-binding protein [Shewanella sp. ANA-3]
Length = 90
Score = 94.5 bits (234), Expect = 5e-18, Method: Composition-based stats.
Identities = 33/91 (36%), Positives = 50/91 (54%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI IA+ N + + + + +T+++ NG ++ I GFGSF RAAR
Sbjct: 1 MNKTELIAKIAE-NADITKAEAARALKSFEAAITESMKNGDKISIVGFGSFETTTRAART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P K I + E VP F+AGK L++ +N
Sbjct: 60 GRNPQTGKEIQIAEATVPKFKAGKTLRDSVN 90
>gi|46580205|ref|YP_011013.1| DNA-binding protein HU [Desulfovibrio vulgaris str.
Hildenborough]
gi|120602409|ref|YP_966809.1| histone family protein DNA-binding protein [Desulfovibrio
vulgaris DP4]
gi|46449622|gb|AAS96272.1| DNA-binding protein HU [Desulfovibrio vulgaris str.
Hildenborough]
gi|120562638|gb|ABM28382.1| histone family protein DNA-binding protein [Desulfovibrio
vulgaris DP4]
gi|311233808|gb|ADP86662.1| histone family protein DNA-binding protein [Desulfovibrio
vulgaris RCH1]
Length = 90
Score = 94.5 bits (234), Expect = 5e-18, Method: Composition-based stats.
Identities = 30/91 (32%), Positives = 45/91 (49%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ L+ IA K L E+ +N L+ + LA+ G++ + GFG+F+V R R
Sbjct: 1 MTKADLVDKIAAK-ANLTKASAERSLNAFLDAVKDVLASEGKLTLTGFGTFAVESRQERK 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P I + V FR GK LK+ +
Sbjct: 60 GRNPRTGAEIKIPASKVVKFRPGKTLKDAVK 90
>gi|256822926|ref|YP_003146889.1| integration host factor subunit alpha [Kangiella koreensis DSM
16069]
gi|256796465|gb|ACV27121.1| integration host factor, alpha subunit [Kangiella koreensis DSM
16069]
Length = 100
Score = 94.5 bits (234), Expect = 5e-18, Method: Composition-based stats.
Identities = 23/89 (25%), Positives = 49/89 (55%), Gaps = 1/89 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ + + ++ LN ++ ++IV E++ AL +G V++ GFG+F +R +A R
Sbjct: 4 TKADMAERLYEEL-GLNKRESKEIVEAFFEQIRDALEDGYNVKLSGFGNFELRDKAQRPG 62
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P + + + + V F+ G+ L+ ++
Sbjct: 63 RNPKTGEEVPISARRVVTFKPGQKLRGKV 91
>gi|212633423|ref|YP_002309948.1| histone-like DNA-binding protein [Shewanella piezotolerans WP3]
gi|212554907|gb|ACJ27361.1| Histone-like bacterial DNA-binding protein [Shewanella
piezotolerans WP3]
Length = 90
Score = 94.5 bits (234), Expect = 5e-18, Method: Composition-based stats.
Identities = 32/91 (35%), Positives = 51/91 (56%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ L+ +A+ + +L + + + E + +A+ NG ++ I GFGSF +RAAR
Sbjct: 1 MNKTELVAKMAE-SAELTKAEAARALKSFEETVAEAMKNGEKISIVGFGSFETSERAART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P K I + VP F+AGK LK+ +N
Sbjct: 60 GRNPQTGKEIQIPAATVPKFKAGKTLKDSVN 90
>gi|222530470|ref|YP_002574352.1| histone family protein DNA-binding protein [Caldicellulosiruptor
bescii DSM 6725]
gi|222457317|gb|ACM61579.1| histone family protein DNA-binding protein [Caldicellulosiruptor
bescii DSM 6725]
Length = 92
Score = 94.5 bits (234), Expect = 5e-18, Method: Composition-based stats.
Identities = 36/90 (40%), Positives = 57/90 (63%), Gaps = 1/90 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K LI +++K+ L +D EK +N L+E + +AL+ G ++++ GFGSF VR+RA R
Sbjct: 1 MSKEELIKAMSQKS-GLTKKDSEKALNALIESIQEALSKGEKIQLVGFGSFEVRQRAERK 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P ++ I + VP F+AGK LK+ +
Sbjct: 60 GRNPQTREEIIIPATKVPVFKAGKMLKQAV 89
>gi|24372142|ref|NP_716184.1| HU family DNA-binding protein [Shewanella oneidensis MR-1]
gi|24346038|gb|AAN53629.1|AE015502_3 DNA-binding protein, HU family [Shewanella oneidensis MR-1]
Length = 90
Score = 94.5 bits (234), Expect = 5e-18, Method: Composition-based stats.
Identities = 33/91 (36%), Positives = 49/91 (53%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI IA+ N + + + +T+++ NG ++ I GFGSF RAAR
Sbjct: 1 MNKTELIAKIAE-NADITKAQATRALKSFEAAITESMKNGDKISIVGFGSFETTTRAART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P K I + E VP F+AGK L++ +N
Sbjct: 60 GRNPQTGKEIQIAEATVPKFKAGKTLRDSVN 90
>gi|114048970|ref|YP_739520.1| histone family protein DNA-binding protein [Shewanella sp. MR-7]
gi|113890412|gb|ABI44463.1| histone family protein DNA-binding protein [Shewanella sp. MR-7]
Length = 90
Score = 94.5 bits (234), Expect = 5e-18, Method: Composition-based stats.
Identities = 33/91 (36%), Positives = 50/91 (54%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI IA+ N + + + + +T+++ NG ++ I GFGSF RAAR
Sbjct: 1 MNKTELIAKIAE-NADITKAEAARALKSFEAAITESMKNGDKISIVGFGSFETSIRAART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P K I + E VP F+AGK L++ +N
Sbjct: 60 GRNPQTGKEIQIAEATVPKFKAGKTLRDSVN 90
>gi|120554972|ref|YP_959323.1| integration host factor subunit alpha [Marinobacter aquaeolei VT8]
gi|166918510|sp|A1U2B7|IHFA_MARAV RecName: Full=Integration host factor subunit alpha;
Short=IHF-alpha
gi|120324821|gb|ABM19136.1| integration host factor, alpha subunit [Marinobacter aquaeolei VT8]
Length = 100
Score = 94.5 bits (234), Expect = 5e-18, Method: Composition-based stats.
Identities = 25/97 (25%), Positives = 53/97 (54%), Gaps = 1/97 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ + + ++ LN ++ +++V +E+ AL++ +V++ GFG+F +R + R
Sbjct: 5 TKADMAERLYEEL-GLNKREAKEMVEAFFDEIRGALSHNEQVKLSGFGNFDLRDKKQRPG 63
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDSTLS 98
R P + I + + V FR G+ LK+++ + T S
Sbjct: 64 RNPKTGEEIPISARRVVTFRPGQKLKQKVEAYAGTQS 100
>gi|189424985|ref|YP_001952162.1| histone family protein DNA-binding protein [Geobacter lovleyi SZ]
gi|189421244|gb|ACD95642.1| histone family protein DNA-binding protein [Geobacter lovleyi SZ]
Length = 92
Score = 94.5 bits (234), Expect = 5e-18, Method: Composition-based stats.
Identities = 35/93 (37%), Positives = 50/93 (53%), Gaps = 1/93 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI +A+K L + EK V + +T L G ++ + GFG+FS KRAAR
Sbjct: 1 MTKAELITAVAEK-AGLKKVEAEKAVAAFVSAVTGCLKQGDKLSLVGFGTFSTSKRAARK 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSP 93
+ P K I++ VP F+ GK LKE +N
Sbjct: 60 GQNPQTGKKITIAAATVPKFKPGKTLKEAVNGK 92
>gi|309796446|ref|ZP_07690854.1| DNA-binding protein HU [Escherichia coli MS 145-7]
gi|308119951|gb|EFO57213.1| DNA-binding protein HU [Escherichia coli MS 145-7]
Length = 90
Score = 94.5 bits (234), Expect = 5e-18, Method: Composition-based stats.
Identities = 34/91 (37%), Positives = 52/91 (57%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI +A+ + ++ E VN L+ + + L GG V + GFG+F V++RAAR
Sbjct: 1 MNKSELIMKVAE-DADISKAKAEAAVNALINSVKEVLKAGGTVALTGFGTFHVKERAART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + I + +P F+AGK LK+ +N
Sbjct: 60 GRNPQTGENIQIAAANIPGFKAGKGLKDSVN 90
>gi|168183614|ref|ZP_02618278.1| DNA-binding protein HU [Clostridium botulinum Bf]
gi|237796995|ref|YP_002864547.1| DNA-binding protein HU [Clostridium botulinum Ba4 str. 657]
gi|182673203|gb|EDT85164.1| DNA-binding protein HU [Clostridium botulinum Bf]
gi|229261295|gb|ACQ52328.1| DNA-binding protein HU [Clostridium botulinum Ba4 str. 657]
Length = 93
Score = 94.5 bits (234), Expect = 5e-18, Method: Composition-based stats.
Identities = 36/94 (38%), Positives = 59/94 (62%), Gaps = 1/94 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI ++A+K+ KL +D E + +E + +AL G +V++ GFG+F R+RA R+
Sbjct: 1 MNKSELITSMAEKS-KLTKKDAETALKAFIESVEEALEGGEKVQLVGFGTFETRERAERV 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSPD 94
R P ++ I++ + P F+AGK LKE++N
Sbjct: 60 GRNPRTKEEITIPASIAPVFKAGKELKEKVNKNK 93
>gi|150388012|ref|YP_001318061.1| histone family protein DNA-binding protein [Alkaliphilus
metalliredigens QYMF]
gi|149947874|gb|ABR46402.1| histone family protein DNA-binding protein [Alkaliphilus
metalliredigens QYMF]
Length = 92
Score = 94.5 bits (234), Expect = 5e-18, Method: Composition-based stats.
Identities = 34/92 (36%), Positives = 56/92 (60%), Gaps = 2/92 (2%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ L+ +A+K+ +L +D E +N +E + +AL +G +V++ GFG+F VR+R R
Sbjct: 1 MNKADLVAKMAEKS-ELTKKDAELALNSFMESVEEALVDGDKVQLVGFGTFEVRERKPRQ 59
Query: 61 ARAPLAQKV-ISVEEKMVPFFRAGKNLKERLN 91
R P + I + P F+AGK LKE++N
Sbjct: 60 GRNPRNPEQVIEIPASKAPVFKAGKTLKEKIN 91
>gi|83311280|ref|YP_421544.1| nucleoid DNA-binding protein [Magnetospirillum magneticum AMB-1]
gi|82946121|dbj|BAE50985.1| Bacterial nucleoid DNA-binding protein [Magnetospirillum
magneticum AMB-1]
Length = 92
Score = 94.5 bits (234), Expect = 5e-18, Method: Composition-based stats.
Identities = 30/91 (32%), Positives = 46/91 (50%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI +A + D ++ + +T A+ +G V + GFG+FSV R AR
Sbjct: 1 MNKSELIAAVAD-GANMTKADAASAIDAVFAAITAAMKSGDDVRLVGFGTFSVSARPARQ 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P K +++ F AGK+LK+ +N
Sbjct: 60 GRNPQTGKTLTIAASKSAKFTAGKSLKDTIN 90
>gi|312795978|ref|YP_004028900.1| integration host factor alpha-subunit [Burkholderia rhizoxinica HKI
454]
gi|312167753|emb|CBW74756.1| Integration host factor alpha-subunit [Burkholderia rhizoxinica HKI
454]
Length = 160
Score = 94.1 bits (233), Expect = 5e-18, Method: Composition-based stats.
Identities = 27/98 (27%), Positives = 48/98 (48%), Gaps = 1/98 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ L + + LN ++ + +V E + AL NG V++ GFG+F +R + R
Sbjct: 63 TKAELAELLFDQ-VGLNKREAKDMVEAFFEAIRDALENGESVKLSGFGNFQLRDKPQRPG 121
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDSTLSN 99
R P + I + + V F A + LK ++ S + L +
Sbjct: 122 RNPKTGEAIPIAARRVVTFHASQKLKAQVESGAANLQS 159
>gi|164688880|ref|ZP_02212908.1| hypothetical protein CLOBAR_02528 [Clostridium bartlettii DSM
16795]
gi|164602084|gb|EDQ95549.1| hypothetical protein CLOBAR_02528 [Clostridium bartlettii DSM
16795]
Length = 93
Score = 94.1 bits (233), Expect = 5e-18, Method: Composition-based stats.
Identities = 36/93 (38%), Positives = 59/93 (63%), Gaps = 2/93 (2%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ L+ +A+K+ +L ++ E +N L+E + +AL +G +V++ GFG+F R+RAAR
Sbjct: 1 MNKAELVSRMAEKS-ELTKKEAEMALNALMESIQEALVSGDKVQLVGFGTFETRERAARK 59
Query: 61 ARAPLA-QKVISVEEKMVPFFRAGKNLKERLNS 92
R P Q+ I + P F+AGK+LKE +N
Sbjct: 60 GRNPRNPQQEIDIPASKAPVFKAGKSLKEAINE 92
>gi|113968892|ref|YP_732685.1| histone family protein DNA-binding protein [Shewanella sp. MR-4]
gi|113883576|gb|ABI37628.1| histone family protein DNA-binding protein [Shewanella sp. MR-4]
Length = 90
Score = 94.1 bits (233), Expect = 5e-18, Method: Composition-based stats.
Identities = 33/91 (36%), Positives = 50/91 (54%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI IA+ N + + + + +T+++ NG ++ I GFGSF RAAR
Sbjct: 1 MNKTELIAKIAE-NADITKAEAARALKSFEAAITESMKNGDKISIVGFGSFETSTRAART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P K I + E VP F+AGK L++ +N
Sbjct: 60 GRNPQTGKEIQIAEATVPKFKAGKTLRDSVN 90
>gi|182419997|ref|ZP_02951231.1| DNA-binding protein HU 1 [Clostridium butyricum 5521]
gi|237669484|ref|ZP_04529464.1| DNA-binding protein HU [Clostridium butyricum E4 str. BoNT E
BL5262]
gi|182376034|gb|EDT73621.1| DNA-binding protein HU 1 [Clostridium butyricum 5521]
gi|237654928|gb|EEP52488.1| DNA-binding protein HU [Clostridium butyricum E4 str. BoNT E
BL5262]
Length = 91
Score = 94.1 bits (233), Expect = 5e-18, Method: Composition-based stats.
Identities = 37/92 (40%), Positives = 60/92 (65%), Gaps = 1/92 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI ++A+K+ KL +D E + +E + +AL NG +V++ GFG+F R+RAAR
Sbjct: 1 MNKAELITSMAEKS-KLTKKDAELALKSFIESVEEALENGEKVQLVGFGTFETRERAARE 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P ++VI++ VP F+AGK K+++N
Sbjct: 60 GRNPRTKEVINIPATTVPVFKAGKEFKDKVNK 91
>gi|188584712|ref|YP_001916257.1| nucleoid protein Hbs [Natranaerobius thermophilus JW/NM-WN-LF]
gi|179349399|gb|ACB83669.1| nucleoid protein Hbs [Natranaerobius thermophilus JW/NM-WN-LF]
Length = 92
Score = 94.1 bits (233), Expect = 5e-18, Method: Composition-based stats.
Identities = 37/92 (40%), Positives = 61/92 (66%), Gaps = 1/92 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI +A+++ ++ +D EK+VN + + ++ LA +V++ GFG+F VR+RAAR
Sbjct: 1 MNKTELISKVAERS-EMTKKDTEKVVNEVFDVISDQLAKEDKVQLIGFGTFEVRERAARE 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P +VI +E VP F+AGK LKE++ +
Sbjct: 60 GRNPSTGEVIQIEATKVPAFKAGKALKEKVKN 91
>gi|162456892|ref|YP_001619259.1| integration host factor alpha-subunit [Sorangium cellulosum 'So
ce 56']
gi|161167474|emb|CAN98779.1| integration host factor alpha-subunit [Sorangium cellulosum 'So
ce 56']
Length = 101
Score = 94.1 bits (233), Expect = 5e-18, Method: Composition-based stats.
Identities = 25/98 (25%), Positives = 52/98 (53%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ ++ + + + ++ +V+++ E M + L G +++I GFG+F +R + R
Sbjct: 1 MTKAEIVQAVYSRLGGFSKKESADLVDLVFETMKETLGRGEKIKISGFGNFVLRDKRQRQ 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDSTLS 98
R P I + E+ V F+A + LK+ LN ++ +
Sbjct: 61 GRNPQTGDPILITERRVLNFKASQILKQALNPRETASA 98
>gi|225851130|ref|YP_002731364.1| histone family protein DNA-binding protein [Persephonella marina
EX-H1]
gi|225645754|gb|ACO03940.1| histone family protein DNA-binding protein [Persephonella marina
EX-H1]
Length = 90
Score = 94.1 bits (233), Expect = 5e-18, Method: Composition-based stats.
Identities = 30/91 (32%), Positives = 50/91 (54%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ L+ +A + + E+ VN ++ +T+AL G RV + G G F+V++R AR
Sbjct: 1 MTKAELVAKVAAE-AGVTKASAERCVNAFVKALTEALEKGERVALPGLGVFNVKERKARK 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + I++ + V F A K LKE++
Sbjct: 60 GRNPRTGEEITIPARKVVTFHAAKALKEKVK 90
>gi|15640302|ref|NP_229929.1| DNA-binding protein HU [Vibrio cholerae O1 biovar El Tor str.
N16961]
gi|121586341|ref|ZP_01676130.1| DNA-binding protein HU [Vibrio cholerae 2740-80]
gi|121727076|ref|ZP_01680267.1| DNA-binding protein HU [Vibrio cholerae V52]
gi|147674530|ref|YP_001218528.1| DNA-binding protein HU [Vibrio cholerae O395]
gi|153801528|ref|ZP_01956114.1| DNA-binding protein HU [Vibrio cholerae MZO-3]
gi|153818506|ref|ZP_01971173.1| DNA-binding protein HU [Vibrio cholerae NCTC 8457]
gi|153826741|ref|ZP_01979408.1| DNA-binding protein HU [Vibrio cholerae MZO-2]
gi|153830400|ref|ZP_01983067.1| DNA-binding protein HU [Vibrio cholerae 623-39]
gi|227080487|ref|YP_002809038.1| DNA-binding protein HU [Vibrio cholerae M66-2]
gi|229506930|ref|ZP_04396438.1| DNA-binding protein HU-alpha [Vibrio cholerae BX 330286]
gi|229509301|ref|ZP_04398784.1| DNA-binding protein HU-alpha [Vibrio cholerae B33]
gi|229512729|ref|ZP_04402197.1| DNA-binding protein HU-alpha [Vibrio cholerae TMA 21]
gi|229516247|ref|ZP_04405695.1| DNA-binding protein HU-alpha [Vibrio cholerae RC9]
gi|229521010|ref|ZP_04410431.1| DNA-binding protein HU-alpha [Vibrio cholerae TM 11079-80]
gi|229524780|ref|ZP_04414185.1| DNA-binding protein HU-alpha [Vibrio cholerae bv. albensis VL426]
gi|229527230|ref|ZP_04416623.1| DNA-binding protein HU-alpha [Vibrio cholerae 12129(1)]
gi|229606441|ref|YP_002877089.1| DNA-binding protein HU-alpha [Vibrio cholerae MJ-1236]
gi|254225659|ref|ZP_04919266.1| DNA-binding protein HU [Vibrio cholerae V51]
gi|254286255|ref|ZP_04961214.1| DNA-binding protein HU [Vibrio cholerae AM-19226]
gi|254851407|ref|ZP_05240757.1| DNA-binding protein HU [Vibrio cholerae MO10]
gi|255744076|ref|ZP_05418030.1| DNA-binding protein HU-alpha [Vibrio cholera CIRS 101]
gi|262161965|ref|ZP_06030982.1| DNA-binding protein HU-alpha [Vibrio cholerae INDRE 91/1]
gi|262168021|ref|ZP_06035720.1| DNA-binding protein HU-alpha [Vibrio cholerae RC27]
gi|262192520|ref|ZP_06050670.1| DNA-binding protein HU-alpha [Vibrio cholerae CT 5369-93]
gi|297581737|ref|ZP_06943659.1| DNA-binding protein HU-alpha [Vibrio cholerae RC385]
gi|298500908|ref|ZP_07010710.1| DNA-binding protein HU [Vibrio cholerae MAK 757]
gi|14194652|sp|Q9KV83|DBHA_VIBCH RecName: Full=DNA-binding protein HU-alpha
gi|9654683|gb|AAF93448.1| DNA-binding protein HU [Vibrio cholerae O1 biovar El Tor str.
N16961]
gi|121549461|gb|EAX59489.1| DNA-binding protein HU [Vibrio cholerae 2740-80]
gi|121630587|gb|EAX62977.1| DNA-binding protein HU [Vibrio cholerae V52]
gi|124122933|gb|EAY41676.1| DNA-binding protein HU [Vibrio cholerae MZO-3]
gi|125621779|gb|EAZ50106.1| DNA-binding protein HU [Vibrio cholerae V51]
gi|126510982|gb|EAZ73576.1| DNA-binding protein HU [Vibrio cholerae NCTC 8457]
gi|146316413|gb|ABQ20952.1| DNA-binding protein HU [Vibrio cholerae O395]
gi|148874134|gb|EDL72269.1| DNA-binding protein HU [Vibrio cholerae 623-39]
gi|149739456|gb|EDM53694.1| DNA-binding protein HU [Vibrio cholerae MZO-2]
gi|150423670|gb|EDN15612.1| DNA-binding protein HU [Vibrio cholerae AM-19226]
gi|227008375|gb|ACP04587.1| DNA-binding protein HU [Vibrio cholerae M66-2]
gi|227012115|gb|ACP08325.1| DNA-binding protein HU [Vibrio cholerae O395]
gi|229335238|gb|EEO00722.1| DNA-binding protein HU-alpha [Vibrio cholerae 12129(1)]
gi|229338361|gb|EEO03378.1| DNA-binding protein HU-alpha [Vibrio cholerae bv. albensis VL426]
gi|229341895|gb|EEO06896.1| DNA-binding protein HU-alpha [Vibrio cholerae TM 11079-80]
gi|229346673|gb|EEO11643.1| DNA-binding protein HU-alpha [Vibrio cholerae RC9]
gi|229350239|gb|EEO15191.1| DNA-binding protein HU-alpha [Vibrio cholerae TMA 21]
gi|229353616|gb|EEO18553.1| DNA-binding protein HU-alpha [Vibrio cholerae B33]
gi|229356035|gb|EEO20954.1| DNA-binding protein HU-alpha [Vibrio cholerae BX 330286]
gi|229369096|gb|ACQ59519.1| DNA-binding protein HU-alpha [Vibrio cholerae MJ-1236]
gi|254847112|gb|EET25526.1| DNA-binding protein HU [Vibrio cholerae MO10]
gi|255738341|gb|EET93732.1| DNA-binding protein HU-alpha [Vibrio cholera CIRS 101]
gi|262023554|gb|EEY42256.1| DNA-binding protein HU-alpha [Vibrio cholerae RC27]
gi|262028343|gb|EEY46999.1| DNA-binding protein HU-alpha [Vibrio cholerae INDRE 91/1]
gi|262031565|gb|EEY50153.1| DNA-binding protein HU-alpha [Vibrio cholerae CT 5369-93]
gi|297534144|gb|EFH72983.1| DNA-binding protein HU-alpha [Vibrio cholerae RC385]
gi|297540412|gb|EFH76471.1| DNA-binding protein HU [Vibrio cholerae MAK 757]
gi|327483145|gb|AEA77552.1| DNA-binding protein HU-alpha [Vibrio cholerae LMA3894-4]
Length = 90
Score = 94.1 bits (233), Expect = 5e-18, Method: Composition-based stats.
Identities = 32/91 (35%), Positives = 47/91 (51%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI IA+K L + + L + AL +G +V++ GFG+F V R+AR
Sbjct: 1 MNKTQLIDFIAEK-ADLTKVQAKAALEATLGAVEGALKDGDQVQLIGFGTFKVNHRSART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + I + VP F AGK LK+ +
Sbjct: 60 GRNPKTGEEIKIAAANVPAFVAGKALKDAIK 90
>gi|166033174|ref|ZP_02236003.1| hypothetical protein DORFOR_02896 [Dorea formicigenerans ATCC
27755]
gi|166027531|gb|EDR46288.1| hypothetical protein DORFOR_02896 [Dorea formicigenerans ATCC
27755]
Length = 91
Score = 94.1 bits (233), Expect = 5e-18, Method: Composition-based stats.
Identities = 31/92 (33%), Positives = 54/92 (58%), Gaps = 1/92 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ L+ IA K +++ +D EK + ++ +T+ L G ++++ GFG+F +RAAR
Sbjct: 1 MNKTELVAAIADK-AEISKKDSEKALKAFVDVVTEELKKGHKIQLVGFGTFETSERAARE 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P + + +E P F+AGK LK+ +N
Sbjct: 60 GRNPSTGETMKIEACKAPKFKAGKALKDAVNE 91
>gi|224542695|ref|ZP_03683234.1| hypothetical protein CATMIT_01880 [Catenibacterium mitsuokai DSM
15897]
gi|224524405|gb|EEF93510.1| hypothetical protein CATMIT_01880 [Catenibacterium mitsuokai DSM
15897]
Length = 91
Score = 94.1 bits (233), Expect = 6e-18, Method: Composition-based stats.
Identities = 30/92 (32%), Positives = 51/92 (55%), Gaps = 1/92 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ L+ +A+ L D E+ +N L++ ++ AL G +V ++G G+F VR+R AR
Sbjct: 1 MKKNELVEKVAE-GASLTKADAERAINALVDAVSGALVEGDKVALKGLGTFEVRERKART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
P ++ I + VP F+A LK+ +N
Sbjct: 60 GINPRTRETIEIPASKVPAFKASSTLKDAVNK 91
>gi|206895738|ref|YP_002246738.1| DNA-binding protein HU [Coprothermobacter proteolyticus DSM 5265]
gi|206738355|gb|ACI17433.1| DNA-binding protein HU [Coprothermobacter proteolyticus DSM 5265]
Length = 87
Score = 94.1 bits (233), Expect = 6e-18, Method: Composition-based stats.
Identities = 25/88 (28%), Positives = 47/88 (53%), Gaps = 1/88 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K L+ +A++ + +D E +N ++ +T+ + +G V + GFG F +R+R AR
Sbjct: 1 MTKPELVDALAERT-GMKKKDAELFLNAFMDVVTETVKSGEPVVLVGFGKFMLRERKARK 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKE 88
P ++ I + K F+ GK L++
Sbjct: 60 GVNPKTREPIDIPAKKTVVFKPGKELRD 87
>gi|226941099|ref|YP_002796173.1| HupB2 [Laribacter hongkongensis HLHK9]
gi|226716026|gb|ACO75164.1| HupB2 [Laribacter hongkongensis HLHK9]
Length = 90
Score = 94.1 bits (233), Expect = 6e-18, Method: Composition-based stats.
Identities = 23/90 (25%), Positives = 45/90 (50%), Gaps = 1/90 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K LI +A++ + + +V+ L + + + LA GG + + G F +R++AAR+
Sbjct: 1 MTKQELIQRLAER-ANVGKVETLLVVDALEQLIREELAAGGEIPLARTGKFRLREQAARM 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P + + + + F K LK+ +
Sbjct: 60 GRNPKTGESVMIPARRKIVFTPAKALKDAV 89
>gi|260219735|emb|CBA26580.1| DNA-binding protein HU-beta [Curvibacter putative symbiont of
Hydra magnipapillata]
Length = 90
Score = 94.1 bits (233), Expect = 6e-18, Method: Composition-based stats.
Identities = 34/91 (37%), Positives = 48/91 (52%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI IA K+ ++ + + + + L GG V + GFG+F+V KRAAR
Sbjct: 1 MNKTELIEHIA-KHADISKAAATRALESTIGAVKTTLKKGGTVSLVGFGTFAVGKRAART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P I ++ VP FR GK LK+ LN
Sbjct: 60 GRNPRTGAAIKIKAAKVPKFRPGKALKDALN 90
>gi|167816064|ref|ZP_02447744.1| integration host factor subunit alpha [Burkholderia pseudomallei
91]
Length = 134
Score = 94.1 bits (233), Expect = 6e-18, Method: Composition-based stats.
Identities = 25/91 (27%), Positives = 44/91 (48%), Gaps = 1/91 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ L + + LN ++ + +V E + AL NG V++ GFG+F +R + R
Sbjct: 37 TKAELAELLFD-SVGLNKREAKDMVEAFFEVIRDALENGESVKLSGFGNFQLRDKPQRPG 95
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P + I + + V F A + LK + +
Sbjct: 96 RNPKTGEAIPIAARRVVTFHASQKLKALVEN 126
>gi|121604539|ref|YP_981868.1| histone family protein DNA-binding protein [Polaromonas
naphthalenivorans CJ2]
gi|120593508|gb|ABM36947.1| histone family protein DNA-binding protein [Polaromonas
naphthalenivorans CJ2]
Length = 90
Score = 94.1 bits (233), Expect = 6e-18, Method: Composition-based stats.
Identities = 34/91 (37%), Positives = 48/91 (52%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI IA +N ++ + + + + L GG V + GFG+F+V KRAAR
Sbjct: 1 MNKTELIEHIA-QNADISKAAATRALESTISAVKATLKKGGSVSLVGFGTFAVGKRAART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P I ++ VP FR GK LK+ LN
Sbjct: 60 GRNPRTGDAIKIKAAKVPKFRPGKALKDALN 90
>gi|28199777|ref|NP_780091.1| integration host factor subunit alpha [Xylella fastidiosa
Temecula1]
gi|71275161|ref|ZP_00651448.1| Integration host factor, alpha subunit [Xylella fastidiosa Dixon]
gi|71898242|ref|ZP_00680416.1| Integration host factor, alpha subunit [Xylella fastidiosa Ann-1]
gi|71901128|ref|ZP_00683234.1| Integration host factor, alpha subunit [Xylella fastidiosa Ann-1]
gi|170731152|ref|YP_001776585.1| integration host factor subunit alpha [Xylella fastidiosa M12]
gi|182682527|ref|YP_001830687.1| integration host factor subunit alpha [Xylella fastidiosa M23]
gi|32129614|sp|Q87AB7|IHFA_XYLFT RecName: Full=Integration host factor subunit alpha;
Short=IHF-alpha
gi|226709761|sp|B2I9P2|IHFA_XYLF2 RecName: Full=Integration host factor subunit alpha;
Short=IHF-alpha
gi|226709762|sp|B0U5D7|IHFA_XYLFM RecName: Full=Integration host factor subunit alpha;
Short=IHF-alpha
gi|28057898|gb|AAO29740.1| integration host factor, alpha subunit [Xylella fastidiosa
Temecula1]
gi|71163970|gb|EAO13685.1| Integration host factor, alpha subunit [Xylella fastidiosa Dixon]
gi|71729092|gb|EAO31217.1| Integration host factor, alpha subunit [Xylella fastidiosa Ann-1]
gi|71731981|gb|EAO34038.1| Integration host factor, alpha subunit [Xylella fastidiosa Ann-1]
gi|167965945|gb|ACA12955.1| integration host factor, alpha subunit [Xylella fastidiosa M12]
gi|182632637|gb|ACB93413.1| integration host factor, alpha subunit [Xylella fastidiosa M23]
gi|307578805|gb|ADN62774.1| integration host factor subunit alpha [Xylella fastidiosa subsp.
fastidiosa GB514]
Length = 99
Score = 94.1 bits (233), Expect = 6e-18, Method: Composition-based stats.
Identities = 24/91 (26%), Positives = 50/91 (54%), Gaps = 1/91 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ ++ + + LN ++ ++ V+ + + AL G +++ GFG+F +R + R
Sbjct: 4 TKAEMVERLFDE-VGLNKREAKEFVDAFFDLLRDALEQGKEIKLSGFGNFELRCKNQRPG 62
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P + I + + V FR+G+ LKER+++
Sbjct: 63 RNPKTGEEIPISARTVVTFRSGQKLKERVDA 93
>gi|332288797|ref|YP_004419649.1| integration host factor protein subunit beta [Gallibacterium
anatis UMN179]
gi|330431693|gb|AEC16752.1| integration host factor protein subunit beta [Gallibacterium
anatis UMN179]
Length = 93
Score = 94.1 bits (233), Expect = 6e-18, Method: Composition-based stats.
Identities = 36/92 (39%), Positives = 57/92 (61%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI + ++P ++ + +E V ++E ++ L G R+EIR FGSF++R R R
Sbjct: 1 MTKSELIEKLINRHPTMSIKHIEFSVKEIIEHLSLTLEKGDRIEIRRFGSFALRYRQPRT 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P +S+E K VP F+AGK L+ER+++
Sbjct: 61 GRNPKTGTQVSLEAKSVPHFKAGKELRERVDN 92
>gi|317131350|ref|YP_004090664.1| histone family protein DNA-binding protein [Ethanoligenens
harbinense YUAN-3]
gi|315469329|gb|ADU25933.1| histone family protein DNA-binding protein [Ethanoligenens
harbinense YUAN-3]
Length = 91
Score = 94.1 bits (233), Expect = 6e-18, Method: Composition-based stats.
Identities = 30/90 (33%), Positives = 52/90 (57%), Gaps = 1/90 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI +A+K+ L+ +D EK L++ + ++L +V++ GFG+F V R AR
Sbjct: 1 MTKAELIAKVAEKS-GLSKKDAEKATGALIDSIVESLVAEEKVQLVGFGTFEVHHREARK 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P ++ I++ P F+AGK K+ +
Sbjct: 60 GRNPRTKEEITIPASAYPVFKAGKPFKDAV 89
>gi|317153210|ref|YP_004121258.1| histone family protein DNA-binding protein [Desulfovibrio
aespoeensis Aspo-2]
gi|316943461|gb|ADU62512.1| histone family protein DNA-binding protein [Desulfovibrio
aespoeensis Aspo-2]
Length = 90
Score = 94.1 bits (233), Expect = 6e-18, Method: Composition-based stats.
Identities = 31/91 (34%), Positives = 48/91 (52%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ L+ IA+K L + E+ +N LE + L + G++ + GFG+F V +R AR+
Sbjct: 1 MTKAELVVKIAEK-ANLTKANAERALNAFLESVEGNLVSEGKLTLTGFGTFVVEQRKARV 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P I + V FR GK LK+ +
Sbjct: 60 GRNPRTGADIKIPATKVVKFRPGKLLKDAIK 90
>gi|16801114|ref|NP_471382.1| hypothetical protein lin2048 [Listeria innocua Clip11262]
gi|16803973|ref|NP_465458.1| hypothetical protein lmo1934 [Listeria monocytogenes EGD-e]
gi|46908167|ref|YP_014556.1| DNA-binding protein HU [Listeria monocytogenes serotype 4b str.
F2365]
gi|47094458|ref|ZP_00232138.1| DNA-binding protein HU [Listeria monocytogenes str. 4b H7858]
gi|47097574|ref|ZP_00235105.1| DNA-binding protein HU [Listeria monocytogenes str. 1/2a F6854]
gi|116873376|ref|YP_850157.1| DNA-binding protein HU [Listeria welshimeri serovar 6b str.
SLCC5334]
gi|217963914|ref|YP_002349592.1| DNA-binding protein HU 1 (DNA-binding protein II) (HB) [Listeria
monocytogenes HCC23]
gi|224498616|ref|ZP_03666965.1| DNA-binding protein HU 1 (DNA-binding protein II) (HB) [Listeria
monocytogenes Finland 1988]
gi|224501267|ref|ZP_03669574.1| DNA-binding protein HU 1 (DNA-binding protein II) (HB) [Listeria
monocytogenes FSL R2-561]
gi|226224538|ref|YP_002758645.1| non-specific DNA-binding protein HU [Listeria monocytogenes
Clip81459]
gi|254825571|ref|ZP_05230572.1| DNA-binding protein HU [Listeria monocytogenes FSL J1-194]
gi|254827181|ref|ZP_05231868.1| DNA-binding protein HU [Listeria monocytogenes FSL N3-165]
gi|254831465|ref|ZP_05236120.1| non-specific DNA-binding protein HU [Listeria monocytogenes
10403S]
gi|254852837|ref|ZP_05242185.1| DNA-binding protein HU [Listeria monocytogenes FSL R2-503]
gi|254899369|ref|ZP_05259293.1| non-specific DNA-binding protein HU [Listeria monocytogenes
J0161]
gi|254912492|ref|ZP_05262504.1| DNA-binding protein HU [Listeria monocytogenes J2818]
gi|254931895|ref|ZP_05265254.1| DNA-binding protein HU [Listeria monocytogenes HPB2262]
gi|254936819|ref|ZP_05268516.1| DNA-binding protein HU [Listeria monocytogenes F6900]
gi|254993467|ref|ZP_05275657.1| non-specific DNA-binding protein HU [Listeria monocytogenes FSL
J2-064]
gi|255522325|ref|ZP_05389562.1| non-specific DNA-binding protein HU [Listeria monocytogenes FSL
J1-175]
gi|284802379|ref|YP_003414244.1| hypothetical protein LM5578_2135 [Listeria monocytogenes 08-5578]
gi|284995521|ref|YP_003417289.1| hypothetical protein LM5923_2086 [Listeria monocytogenes 08-5923]
gi|289435283|ref|YP_003465155.1| DNA-binding protein HU [Listeria seeligeri serovar 1/2b str.
SLCC3954]
gi|290892094|ref|ZP_06555090.1| DNA-binding protein HU [Listeria monocytogenes FSL J2-071]
gi|300763756|ref|ZP_07073753.1| DNA-binding protein HU [Listeria monocytogenes FSL N1-017]
gi|315282964|ref|ZP_07871256.1| DNA-binding protein HU [Listeria marthii FSL S4-120]
gi|315303883|ref|ZP_07874360.1| DNA-binding protein HU [Listeria ivanovii FSL F6-596]
gi|16411387|emb|CAD00012.1| hup [Listeria monocytogenes EGD-e]
gi|16414549|emb|CAC97278.1| hup [Listeria innocua Clip11262]
gi|46881437|gb|AAT04733.1| DNA-binding protein HU [Listeria monocytogenes serotype 4b str.
F2365]
gi|47014049|gb|EAL05051.1| DNA-binding protein HU [Listeria monocytogenes str. 1/2a F6854]
gi|47017173|gb|EAL08026.1| DNA-binding protein HU [Listeria monocytogenes str. 4b H7858]
gi|116742254|emb|CAK21378.1| DNA-binding protein HU [Listeria welshimeri serovar 6b str.
SLCC5334]
gi|217333184|gb|ACK38978.1| DNA-binding protein HU 1 (DNA-binding protein II) (HB) [Listeria
monocytogenes HCC23]
gi|225877000|emb|CAS05709.1| Putative non-specific DNA-binding protein HU [Listeria
monocytogenes serotype 4b str. CLIP 80459]
gi|258599564|gb|EEW12889.1| DNA-binding protein HU [Listeria monocytogenes FSL N3-165]
gi|258606166|gb|EEW18774.1| DNA-binding protein HU [Listeria monocytogenes FSL R2-503]
gi|258609414|gb|EEW22022.1| DNA-binding protein HU [Listeria monocytogenes F6900]
gi|284057941|gb|ADB68882.1| hypothetical protein LM5578_2135 [Listeria monocytogenes 08-5578]
gi|284060988|gb|ADB71927.1| hypothetical protein LM5923_2086 [Listeria monocytogenes 08-5923]
gi|289171527|emb|CBH28071.1| DNA-binding protein HU [Listeria seeligeri serovar 1/2b str.
SLCC3954]
gi|290558217|gb|EFD91735.1| DNA-binding protein HU [Listeria monocytogenes FSL J2-071]
gi|293583447|gb|EFF95479.1| DNA-binding protein HU [Listeria monocytogenes HPB2262]
gi|293590474|gb|EFF98808.1| DNA-binding protein HU [Listeria monocytogenes J2818]
gi|293594814|gb|EFG02575.1| DNA-binding protein HU [Listeria monocytogenes FSL J1-194]
gi|300515492|gb|EFK42542.1| DNA-binding protein HU [Listeria monocytogenes FSL N1-017]
gi|307571516|emb|CAR84695.1| DNA-binding protein [Listeria monocytogenes L99]
gi|313607937|gb|EFR84075.1| DNA-binding protein HU [Listeria monocytogenes FSL F2-208]
gi|313613391|gb|EFR87243.1| DNA-binding protein HU [Listeria marthii FSL S4-120]
gi|313618142|gb|EFR90235.1| DNA-binding protein HU [Listeria innocua FSL S4-378]
gi|313623144|gb|EFR93410.1| DNA-binding protein HU [Listeria innocua FSL J1-023]
gi|313627747|gb|EFR96403.1| DNA-binding protein HU [Listeria ivanovii FSL F6-596]
gi|313632625|gb|EFR99610.1| DNA-binding protein HU [Listeria seeligeri FSL N1-067]
gi|313637161|gb|EFS02693.1| DNA-binding protein HU [Listeria seeligeri FSL S4-171]
gi|328466283|gb|EGF37440.1| DNA-binding protein HU [Listeria monocytogenes 1816]
gi|328472777|gb|EGF43626.1| DNA-binding protein HU [Listeria monocytogenes 220]
gi|332312374|gb|EGJ25469.1| DNA-binding protein HU 1 [Listeria monocytogenes str. Scott A]
Length = 91
Score = 94.1 bits (233), Expect = 6e-18, Method: Composition-based stats.
Identities = 32/90 (35%), Positives = 53/90 (58%), Gaps = 1/90 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ L+ ++A+ L+ +D K V + E + +L+ G +V++ GFG+F VR+RAAR
Sbjct: 3 NKTDLVNSVAE-LADLSKKDAAKAVEAVFETIQTSLSKGEKVQLIGFGNFEVRERAARKG 61
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P ++ I + VP F+ GK LKE +
Sbjct: 62 RNPRTKEEIDIPASKVPAFKPGKALKEAVK 91
>gi|319941268|ref|ZP_08015599.1| histone family protein DNA-binding protein [Sutterella
wadsworthensis 3_1_45B]
gi|319805189|gb|EFW02012.1| histone family protein DNA-binding protein [Sutterella
wadsworthensis 3_1_45B]
Length = 91
Score = 94.1 bits (233), Expect = 6e-18, Method: Composition-based stats.
Identities = 29/90 (32%), Positives = 45/90 (50%), Gaps = 1/90 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ L +A+K L+ D K++ E +++ L+ G V+I GFG+F V AR
Sbjct: 1 MNKTELTAAVAQK-AGLSKSDAAKVLGAFFETVSEELSKGQAVQIIGFGNFEVADYKART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P V+ + P F AG LK+ +
Sbjct: 60 GRNPQTGAVLEIPAGKRPKFTAGSALKKAV 89
>gi|229496747|ref|ZP_04390458.1| DNA-binding protein, HU family [Porphyromonas endodontalis ATCC
35406]
gi|229316293|gb|EEN82215.1| DNA-binding protein, HU family [Porphyromonas endodontalis ATCC
35406]
Length = 88
Score = 94.1 bits (233), Expect = 6e-18, Method: Composition-based stats.
Identities = 28/86 (32%), Positives = 45/86 (52%), Gaps = 1/86 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ I +A+K L D ++ VN E + + + G R+ + GFG+FSV +R AR
Sbjct: 1 MNKTEFIAAVAEK-AGLTKADAQRAVNAFTEVVKETMEKGDRLPLVGFGTFSVSQRKARE 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNL 86
+ P + I + + V F+ G NL
Sbjct: 60 GKNPRTGETIKIAARKVVHFKPGANL 85
>gi|166366854|ref|YP_001659127.1| DNA binding protein HU [Microcystis aeruginosa NIES-843]
gi|166089227|dbj|BAG03935.1| DNA binding protein HU [Microcystis aeruginosa NIES-843]
Length = 94
Score = 94.1 bits (233), Expect = 6e-18, Method: Composition-based stats.
Identities = 30/90 (33%), Positives = 47/90 (52%), Gaps = 1/90 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K LI IA K + + + ++ +E + +A++ G +V + GFGSF R+R AR
Sbjct: 1 MNKGELIDQIALK-ASVTKKQADAVLTAAIETIIEAVSEGDKVTLVGFGSFEARERQARE 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P + + VP F AGK K+R+
Sbjct: 60 GRNPKTGDKMEIPATRVPAFSAGKLFKDRV 89
>gi|322515115|ref|ZP_08068120.1| DNA-binding protein HU [Actinobacillus ureae ATCC 25976]
gi|322118880|gb|EFX91067.1| DNA-binding protein HU [Actinobacillus ureae ATCC 25976]
Length = 90
Score = 94.1 bits (233), Expect = 6e-18, Method: Composition-based stats.
Identities = 32/91 (35%), Positives = 50/91 (54%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI IA +L+ +D + + LE ++++L G V++ GFG+F V +R AR
Sbjct: 1 MNKTELIDAIAA-GAELSKKDAKAALEATLEAISESLKKGDAVQLIGFGTFKVNERNART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + I + VP F AGK LK+ +
Sbjct: 60 GRNPRTGEEIKIAAAKVPAFVAGKALKDLVK 90
>gi|190575245|ref|YP_001973090.1| integration host factor subunit alpha [Stenotrophomonas
maltophilia K279a]
gi|194366572|ref|YP_002029182.1| integration host factor subunit alpha [Stenotrophomonas
maltophilia R551-3]
gi|254522974|ref|ZP_05135029.1| integration host factor, alpha subunit [Stenotrophomonas sp.
SKA14]
gi|226709756|sp|B4SQG8|IHFA_STRM5 RecName: Full=Integration host factor subunit alpha;
Short=IHF-alpha
gi|226709757|sp|B2FN73|IHFA_STRMK RecName: Full=Integration host factor subunit alpha;
Short=IHF-alpha
gi|190013167|emb|CAQ46800.1| putative Integration host factor alpha-subunit [Stenotrophomonas
maltophilia K279a]
gi|194349376|gb|ACF52499.1| integration host factor, alpha subunit [Stenotrophomonas
maltophilia R551-3]
gi|219720565|gb|EED39090.1| integration host factor, alpha subunit [Stenotrophomonas sp.
SKA14]
Length = 99
Score = 94.1 bits (233), Expect = 6e-18, Method: Composition-based stats.
Identities = 25/89 (28%), Positives = 49/89 (55%), Gaps = 1/89 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ + + + LN ++ ++ V+ + + +AL G +V++ GFG+F +R++ R
Sbjct: 4 TKAEMAEKLFDE-VGLNKREAKEFVDAFFDVLREALEQGRQVKLSGFGNFDLRRKNQRPG 62
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P + I + + V FR G+ LKER+
Sbjct: 63 RNPKTGEEIPISARTVVTFRPGQKLKERV 91
>gi|117925356|ref|YP_865973.1| histone family protein DNA-binding protein [Magnetococcus sp.
MC-1]
gi|117609112|gb|ABK44567.1| histone family protein DNA-binding protein [Magnetococcus sp.
MC-1]
Length = 96
Score = 94.1 bits (233), Expect = 6e-18, Method: Composition-based stats.
Identities = 24/92 (26%), Positives = 47/92 (51%), Gaps = 1/92 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ ++ T+ + L+ ++ +V + E + L +G V+I GFG FS+ + R
Sbjct: 3 MTKADIVQTVYHRL-GLSKKESADVVESVFEIIRSQLESGEPVKIYGFGGFSMLDKKPRQ 61
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P + + + + V F+A + L +R+N
Sbjct: 62 GRNPKTGEDVEISARRVVTFKASQILLDRVNK 93
>gi|70733385|ref|YP_263160.1| integration host factor subunit beta [Pseudomonas fluorescens
Pf-5]
gi|68347684|gb|AAY95290.1| integration host factor, beta subunit, putative [Pseudomonas
fluorescens Pf-5]
Length = 91
Score = 94.1 bits (233), Expect = 6e-18, Method: Composition-based stats.
Identities = 30/91 (32%), Positives = 48/91 (52%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K L IA+K L + +++N +LEE+T AL V + GFG+F R R AR
Sbjct: 1 MRKPELAAAIAEK-ADLTKEQANRVLNAILEEITGALHRKDSVTLVGFGTFLQRHRGART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
+ P + + ++ F+ GK+LK+ +N
Sbjct: 60 GKNPQTGEPVKIKASNTVAFKPGKSLKDSVN 90
>gi|167836846|ref|ZP_02463729.1| integration host factor subunit alpha [Burkholderia thailandensis
MSMB43]
Length = 134
Score = 94.1 bits (233), Expect = 6e-18, Method: Composition-based stats.
Identities = 25/91 (27%), Positives = 44/91 (48%), Gaps = 1/91 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ L + + LN ++ + +V E + AL NG V++ GFG+F +R + R
Sbjct: 37 TKAELAELLFD-SVGLNKREAKDMVEAFFEVIRDALENGESVKLSGFGNFQLRDKPQRPG 95
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P + I + + V F A + LK + +
Sbjct: 96 RNPKTGEAIPIAARRVVTFHASQKLKALVEN 126
>gi|53725309|ref|YP_102781.1| integration host factor subunit alpha [Burkholderia mallei ATCC
23344]
gi|121600745|ref|YP_992860.1| integration host factor subunit alpha [Burkholderia mallei SAVP1]
gi|124384579|ref|YP_001026200.1| integration host factor subunit alpha [Burkholderia mallei NCTC
10229]
gi|126450691|ref|YP_001080530.1| integration host factor subunit alpha [Burkholderia mallei NCTC
10247]
gi|134282277|ref|ZP_01768982.1| integration host factor alpha subunit [Burkholderia pseudomallei
305]
gi|167003084|ref|ZP_02268874.1| integration host factor alpha subunit [Burkholderia mallei PRL-20]
gi|167719842|ref|ZP_02403078.1| integration host factor subunit alpha [Burkholderia pseudomallei
DM98]
gi|167824439|ref|ZP_02455910.1| integration host factor subunit alpha [Burkholderia pseudomallei 9]
gi|167902953|ref|ZP_02490158.1| integration host factor subunit alpha [Burkholderia pseudomallei
NCTC 13177]
gi|217423737|ref|ZP_03455238.1| integration host factor alpha subunit [Burkholderia pseudomallei
576]
gi|237812022|ref|YP_002896473.1| integration host factor, alpha subunit [Burkholderia pseudomallei
MSHR346]
gi|238562599|ref|ZP_00440142.2| integration host factor, alpha subunit [Burkholderia mallei GB8
horse 4]
gi|254179998|ref|ZP_04886597.1| integration host factor alpha subunit [Burkholderia pseudomallei
1655]
gi|254197506|ref|ZP_04903928.1| integration host factor alpha subunit [Burkholderia pseudomallei
S13]
gi|254199733|ref|ZP_04906099.1| integration host factor alpha subunit [Burkholderia mallei FMH]
gi|254206055|ref|ZP_04912407.1| integration host factor alpha subunit [Burkholderia mallei JHU]
gi|254358426|ref|ZP_04974699.1| integration host factor alpha subunit [Burkholderia mallei
2002721280]
gi|52428732|gb|AAU49325.1| integration host factor, alpha subunit [Burkholderia mallei ATCC
23344]
gi|121229555|gb|ABM52073.1| integration host factor, alpha subunit [Burkholderia mallei SAVP1]
gi|124292599|gb|ABN01868.1| integration host factor, alpha subunit [Burkholderia mallei NCTC
10229]
gi|126243561|gb|ABO06654.1| integration host factor alpha subunit [Burkholderia mallei NCTC
10247]
gi|134246315|gb|EBA46404.1| integration host factor alpha subunit [Burkholderia pseudomallei
305]
gi|147749329|gb|EDK56403.1| integration host factor alpha subunit [Burkholderia mallei FMH]
gi|147753498|gb|EDK60563.1| integration host factor alpha subunit [Burkholderia mallei JHU]
gi|148027553|gb|EDK85574.1| integration host factor alpha subunit [Burkholderia mallei
2002721280]
gi|169654247|gb|EDS86940.1| integration host factor alpha subunit [Burkholderia pseudomallei
S13]
gi|184210538|gb|EDU07581.1| integration host factor alpha subunit [Burkholderia pseudomallei
1655]
gi|217393595|gb|EEC33616.1| integration host factor alpha subunit [Burkholderia pseudomallei
576]
gi|237505242|gb|ACQ97560.1| integration host factor, alpha subunit [Burkholderia pseudomallei
MSHR346]
gi|238522284|gb|EEP85729.1| integration host factor, alpha subunit [Burkholderia mallei GB8
horse 4]
gi|243061335|gb|EES43521.1| integration host factor alpha subunit [Burkholderia mallei PRL-20]
Length = 134
Score = 94.1 bits (233), Expect = 6e-18, Method: Composition-based stats.
Identities = 25/91 (27%), Positives = 44/91 (48%), Gaps = 1/91 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ L + + LN ++ + +V E + AL NG V++ GFG+F +R + R
Sbjct: 37 TKAELAELLFD-SVGLNKREAKDMVEAFFEVIRDALENGESVKLSGFGNFQLRDKPQRPG 95
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P + I + + V F A + LK + +
Sbjct: 96 RNPKTGEAIPIAARRVVTFHASQKLKALVEN 126
>gi|229177513|ref|ZP_04304892.1| DNA-binding protein HU [Bacillus cereus 172560W]
gi|228605960|gb|EEK63402.1| DNA-binding protein HU [Bacillus cereus 172560W]
Length = 93
Score = 94.1 bits (233), Expect = 6e-18, Method: Composition-based stats.
Identities = 35/91 (38%), Positives = 52/91 (57%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ L +A+K +L +D LL+ +T ALA G +V+I GFG+F VR+R+AR
Sbjct: 4 MNKTELTKVVAEK-AELTQKDAAAATQALLDTITNALATGEKVQILGFGTFEVRERSART 62
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + + + P F+AGK LKE +
Sbjct: 63 GRNPQTGEEMQIAASKAPAFKAGKELKEAVK 93
>gi|259909249|ref|YP_002649605.1| HopD, DNA-binding protein HU-beta (Synonym HupB) [Erwinia
pyrifoliae Ep1/96]
gi|224964871|emb|CAX56393.1| HopD, DNA-binding protein HU-beta (Synonym HupB) [Erwinia
pyrifoliae Ep1/96]
gi|283479300|emb|CAY75216.1| transcriptional regulator HU subunit beta [Erwinia pyrifoliae DSM
12163]
Length = 90
Score = 94.1 bits (233), Expect = 6e-18, Method: Composition-based stats.
Identities = 34/91 (37%), Positives = 52/91 (57%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI IA + ++ V +I+ ++ +T++L G V + FG+FSVR+RA R
Sbjct: 1 MNKSQLIEKIAA-DADVSKASVGRILEAFIDTVTKSLQVGEEVALLNFGTFSVRERAERP 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P K I++ + V FRAGK L+E +
Sbjct: 60 GRNPQTGKEITIAARKVAGFRAGKELREAVK 90
>gi|237808480|ref|YP_002892920.1| integration host factor, alpha subunit [Tolumonas auensis DSM
9187]
gi|259491534|sp|C4LFG7|IHFA_TOLAT RecName: Full=Integration host factor subunit alpha;
Short=IHF-alpha
gi|237500741|gb|ACQ93334.1| integration host factor, alpha subunit [Tolumonas auensis DSM
9187]
Length = 106
Score = 94.1 bits (233), Expect = 6e-18, Method: Composition-based stats.
Identities = 25/89 (28%), Positives = 48/89 (53%), Gaps = 1/89 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ + + + ++ +D +++V E++ AL +G +V+I GFG+F +R + R
Sbjct: 4 TKADIAEHLFTEL-GISKRDAKELVETFFEDIRLALESGEQVKISGFGNFELRTKNERPG 62
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P + I + + V FR G+ LK R+
Sbjct: 63 RNPKTGEDIPITARRVVTFRPGQKLKSRV 91
>gi|152979637|ref|YP_001345266.1| histone family protein DNA-binding protein [Actinobacillus
succinogenes 130Z]
gi|150841360|gb|ABR75331.1| histone family protein DNA-binding protein [Actinobacillus
succinogenes 130Z]
Length = 91
Score = 94.1 bits (233), Expect = 6e-18, Method: Composition-based stats.
Identities = 32/91 (35%), Positives = 47/91 (51%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI IA L +D + + L+ +T +L G V++ GFG+F V +R AR+
Sbjct: 1 MNKTDLIDAIASA-ASLTKKDAKAALEATLDAITASLKKGDAVQLIGFGTFKVNERKARI 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P I + P F AGK LK+ +N
Sbjct: 60 GRNPQTGAEIKIAASKAPAFVAGKALKDEVN 90
>gi|149374483|ref|ZP_01892257.1| integration host factor, alpha subunit [Marinobacter algicola
DG893]
gi|149361186|gb|EDM49636.1| integration host factor, alpha subunit [Marinobacter algicola
DG893]
gi|311693968|gb|ADP96841.1| integration host factor, alpha subunit [marine bacterium HP15]
Length = 100
Score = 94.1 bits (233), Expect = 6e-18, Method: Composition-based stats.
Identities = 25/97 (25%), Positives = 53/97 (54%), Gaps = 1/97 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ + + ++ LN ++ +++V +E+ AL++ +V++ GFG+F +R + R
Sbjct: 5 TKAEMAERLYEEL-GLNKREAKEMVEAFFDEIRGALSHNEQVKLSGFGNFDLRDKKQRPG 63
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDSTLS 98
R P + I + + V FR G+ LK+++ + T S
Sbjct: 64 RNPKTGEEIPISARRVVTFRPGQKLKQKVEAYAGTQS 100
>gi|304440463|ref|ZP_07400352.1| DNA-binding protein HU [Peptoniphilus duerdenii ATCC BAA-1640]
gi|304371215|gb|EFM24832.1| DNA-binding protein HU [Peptoniphilus duerdenii ATCC BAA-1640]
Length = 92
Score = 94.1 bits (233), Expect = 6e-18, Method: Composition-based stats.
Identities = 38/93 (40%), Positives = 54/93 (58%), Gaps = 2/93 (2%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI IA+K+ L +D E +N L + ALA+G +V++ GFG+F VR+R AR
Sbjct: 1 MNKAELIANIAEKS-NLTKKDAEMALNGFLTTVQDALASGEKVQLVGFGTFEVRERKARE 59
Query: 61 ARAPLAQKV-ISVEEKMVPFFRAGKNLKERLNS 92
R P + I + P FR+GK LKE +N
Sbjct: 60 GRNPRNPEEVIKIPASKAPVFRSGKALKEAVNK 92
>gi|220903373|ref|YP_002478685.1| histone family protein DNA-binding protein [Desulfovibrio
desulfuricans subsp. desulfuricans str. ATCC 27774]
gi|219867672|gb|ACL48007.1| histone family protein DNA-binding protein [Desulfovibrio
desulfuricans subsp. desulfuricans str. ATCC 27774]
Length = 91
Score = 94.1 bits (233), Expect = 6e-18, Method: Composition-based stats.
Identities = 30/91 (32%), Positives = 44/91 (48%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ L+ I K E+ ++ ++ + +ALA G V GFGSF V +RAAR
Sbjct: 1 MTKAELVEKIHAKAGLPTKAKAEEALDAVVAALREALAAGESVTFTGFGSFKVVERAARK 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P I++ V F GK LK+ +
Sbjct: 61 GRNPRTGMEITIPASKVAKFTPGKGLKDAIK 91
>gi|77461821|ref|YP_351328.1| nucleoid protein HU alpha subunit [Pseudomonas fluorescens Pf0-1]
gi|77385824|gb|ABA77337.1| DNA-binding protein HU1 [Pseudomonas fluorescens Pf0-1]
Length = 91
Score = 94.1 bits (233), Expect = 6e-18, Method: Composition-based stats.
Identities = 30/91 (32%), Positives = 48/91 (52%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K L IA+K L + +++N +LEE+T AL V + GFG+F R R AR
Sbjct: 1 MRKPELAAAIAEK-ADLTKEQANRVLNAVLEEITGALHRKDSVTLVGFGTFLQRHRGART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
+ P + + ++ F+ GK+LK+ +N
Sbjct: 60 GKNPQTGEPVKIKASNTVAFKPGKSLKDSVN 90
>gi|189425415|ref|YP_001952592.1| histone family protein DNA-binding protein [Geobacter lovleyi SZ]
gi|189421674|gb|ACD96072.1| histone family protein DNA-binding protein [Geobacter lovleyi SZ]
Length = 94
Score = 94.1 bits (233), Expect = 6e-18, Method: Composition-based stats.
Identities = 28/93 (30%), Positives = 51/93 (54%), Gaps = 1/93 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ L+ I + + L+ +D ++ + M ++L G ++I GFGSF V ++AAR
Sbjct: 1 MTKTDLVEKI-QASIGLSRKDAAVMLESVFSIMKESLEAGETIKISGFGSFVVSRKAARR 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSP 93
R P + I++E + V F+ G L++ +N
Sbjct: 60 GRNPQTGEAITIEARKVLTFKPGSVLRDAINGE 92
>gi|118594371|ref|ZP_01551718.1| Bacterial nucleoid DNA-binding protein [Methylophilales bacterium
HTCC2181]
gi|118440149|gb|EAV46776.1| Bacterial nucleoid DNA-binding protein [Methylophilales bacterium
HTCC2181]
Length = 90
Score = 94.1 bits (233), Expect = 6e-18, Method: Composition-based stats.
Identities = 30/91 (32%), Positives = 44/91 (48%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K LI +A + + ++ + +T AL G V + GFG+F V KRAAR
Sbjct: 1 MNKGELIEAVASAT-GSTKAEAGRAIDATVAAVTGALKKGDSVTLIGFGTFKVAKRAART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + + + VP F+AG LK +N
Sbjct: 60 GRNPQTGAELKIAARTVPSFKAGAALKAAVN 90
>gi|153952810|ref|YP_001393575.1| Hup [Clostridium kluyveri DSM 555]
gi|219853475|ref|YP_002470597.1| hypothetical protein CKR_0132 [Clostridium kluyveri NBRC 12016]
gi|146345691|gb|EDK32227.1| Hup [Clostridium kluyveri DSM 555]
gi|219567199|dbj|BAH05183.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
Length = 91
Score = 94.1 bits (233), Expect = 6e-18, Method: Composition-based stats.
Identities = 38/92 (41%), Positives = 59/92 (64%), Gaps = 1/92 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI IA+K+ KL +D E + +E + + L G +V++ GFG+F RKRAAR+
Sbjct: 1 MNKSELIVGIAEKS-KLTKKDAEAALKGFIESVEETLEKGEKVQLVGFGTFETRKRAARV 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P ++VI++ E VP F+AGK ++++N
Sbjct: 60 GRNPRTKEVINIPESTVPVFKAGKEFRDKVNK 91
>gi|197116588|ref|YP_002137015.1| histone-like protein [Geobacter bemidjiensis Bem]
gi|253698824|ref|YP_003020013.1| histone family protein DNA-binding protein [Geobacter sp. M21]
gi|197085948|gb|ACH37219.1| histone-like protein [Geobacter bemidjiensis Bem]
gi|251773674|gb|ACT16255.1| histone family protein DNA-binding protein [Geobacter sp. M21]
Length = 94
Score = 94.1 bits (233), Expect = 6e-18, Method: Composition-based stats.
Identities = 35/95 (36%), Positives = 48/95 (50%), Gaps = 1/95 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ L+ +A K+ + EK V + ++ AL G RV + GFGSF V R AR
Sbjct: 1 MTKAELVEAVA-KSANIPKGAAEKAVGAFISSVSGALKKGDRVTLVGFGSFEVASRQART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDS 95
R P K I + E VP FR GK LK+ + +
Sbjct: 60 GRNPQTGKEIKIAEAKVPKFRPGKALKDAIAAKKK 94
>gi|319763571|ref|YP_004127508.1| histone family protein DNA-binding protein [Alicycliphilus
denitrificans BC]
gi|330824228|ref|YP_004387531.1| histone family protein DNA-binding protein [Alicycliphilus
denitrificans K601]
gi|317118132|gb|ADV00621.1| histone family protein DNA-binding protein [Alicycliphilus
denitrificans BC]
gi|329309600|gb|AEB84015.1| histone family protein DNA-binding protein [Alicycliphilus
denitrificans K601]
Length = 90
Score = 94.1 bits (233), Expect = 6e-18, Method: Composition-based stats.
Identities = 34/91 (37%), Positives = 49/91 (53%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI IA + ++ + + ++ + + L GG V + GFG+F+V KRAAR
Sbjct: 1 MNKSELIEHIASQ-ADISKAAATRALESTIDAVKKTLKKGGTVSLVGFGTFAVGKRAART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P I ++ VP FR GK LK+ LN
Sbjct: 60 GRNPRTGATIKIKAAKVPKFRPGKALKDALN 90
>gi|229918705|ref|YP_002887351.1| histone family protein DNA-binding protein [Exiguobacterium sp.
AT1b]
gi|229470134|gb|ACQ71906.1| histone family protein DNA-binding protein [Exiguobacterium sp.
AT1b]
Length = 90
Score = 94.1 bits (233), Expect = 6e-18, Method: Composition-based stats.
Identities = 35/91 (38%), Positives = 56/91 (61%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI + +K ++ ++ KIV E +T+AL NG ++++ GFG+F VR+RAAR
Sbjct: 1 MNKTELIQAVTEK-ADVSKKEATKIVEATFESITEALQNGEKIQLIGFGTFEVRERAARK 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P ++ I + VP F+AGK LK+ +
Sbjct: 60 GRNPRTKEDIEIPASKVPAFKAGKALKDAVK 90
>gi|239814795|ref|YP_002943705.1| histone family protein DNA-binding protein [Variovorax paradoxus
S110]
gi|319792644|ref|YP_004154284.1| histone family protein DNA-binding protein [Variovorax paradoxus
EPS]
gi|239801372|gb|ACS18439.1| histone family protein DNA-binding protein [Variovorax paradoxus
S110]
gi|315595107|gb|ADU36173.1| histone family protein DNA-binding protein [Variovorax paradoxus
EPS]
Length = 90
Score = 94.1 bits (233), Expect = 7e-18, Method: Composition-based stats.
Identities = 34/91 (37%), Positives = 48/91 (52%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI IA KN ++ + + + + L GG V + GFG+F+V KRAAR
Sbjct: 1 MNKTELIEHIA-KNADISKAAATRALESTIGAIRTTLKKGGSVSLVGFGTFAVGKRAART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P I ++ +P FR GK LK+ LN
Sbjct: 60 GRNPRTGDAIKIKAAKIPKFRPGKALKDALN 90
>gi|291529702|emb|CBK95288.1| Bacterial nucleoid DNA-binding protein [Eubacterium rectale
M104/1]
Length = 90
Score = 94.1 bits (233), Expect = 7e-18, Method: Composition-based stats.
Identities = 31/91 (34%), Positives = 48/91 (52%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ L+ +A+K L +DV VN E + +AL G +V++ GFG+F V +RAAR+
Sbjct: 1 MTKAELVSAMAEKT-GLTNKDVAAAVNAFTESVKEALVKGDKVQLVGFGTFEVAERAARM 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + I + ++ LK LN
Sbjct: 60 GRNPSTGESIQIAASKTAKWKPSSALKSDLN 90
>gi|251772900|gb|EES53459.1| putative integration host factor, beta-subunit [Leptospirillum
ferrodiazotrophum]
Length = 91
Score = 94.1 bits (233), Expect = 7e-18, Method: Composition-based stats.
Identities = 32/90 (35%), Positives = 54/90 (60%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI +A++ P + +D +++++ LE M + L +G VE+R FG +R R+ R
Sbjct: 1 MTKSELIIRLARQFPGIRREDAREMLDLFLEAMKEGLRSGDTVELRDFGVLRIRSRSQRK 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
AR P + ++VE + V +F+ + LK RL
Sbjct: 61 ARNPKTGEKVTVEARKVVYFKQSRTLKGRL 90
>gi|94270519|ref|ZP_01291761.1| Histone-like bacterial DNA-binding protein [delta proteobacterium
MLMS-1]
gi|93450767|gb|EAT01823.1| Histone-like bacterial DNA-binding protein [delta proteobacterium
MLMS-1]
Length = 91
Score = 94.1 bits (233), Expect = 7e-18, Method: Composition-based stats.
Identities = 28/92 (30%), Positives = 51/92 (55%), Gaps = 1/92 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K L+ +A + +++ +K+V + + M +ALA G ++ GFG+F R RAA+
Sbjct: 1 MNKKELVEKLAAE-GEISKAAADKLVKGVFDNMAEALAKGEKITFPGFGTFETRDRAAKE 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
+R P + + V + F+ GK LK+++N
Sbjct: 60 SRNPRTGEPVQVPARKAVAFKPGKTLKDQVNK 91
>gi|228925137|ref|ZP_04088247.1| DNA-binding protein HU [Bacillus thuringiensis serovar
huazhongensis BGSC 4BD1]
gi|228834476|gb|EEM80005.1| DNA-binding protein HU [Bacillus thuringiensis serovar
huazhongensis BGSC 4BD1]
Length = 93
Score = 93.7 bits (232), Expect = 7e-18, Method: Composition-based stats.
Identities = 36/91 (39%), Positives = 53/91 (58%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ L IA+K +L +D +L+ +T ALANG +V+I GFG+F VR+R+AR
Sbjct: 4 MNKTELTKVIAEK-AELTQKDAAAATQAVLDTITNALANGEKVQILGFGTFEVRERSART 62
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + + + P F+AGK LKE +
Sbjct: 63 GRNPQTGEEMQIAASKAPAFKAGKELKEAVK 93
>gi|118586877|ref|ZP_01544311.1| histone-like DNA-binding protein [Oenococcus oeni ATCC BAA-1163]
gi|118432709|gb|EAV39441.1| histone-like DNA-binding protein [Oenococcus oeni ATCC BAA-1163]
Length = 107
Score = 93.7 bits (232), Expect = 7e-18, Method: Composition-based stats.
Identities = 30/90 (33%), Positives = 46/90 (51%), Gaps = 1/90 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K L+ ++AK L +D V+ + + + L G +V++ GFG+F VR RAAR
Sbjct: 19 NKQELVDSVAKAT-DLTKKDATAAVDAVFDSIASYLKKGEKVQLIGFGNFEVRDRAARTG 77
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P I + VP F+ GK LK+ +
Sbjct: 78 RNPQTGAEIKIPASKVPAFKPGKALKDTVK 107
>gi|226946851|ref|YP_002801924.1| histone-like DNA-binding protein [Azotobacter vinelandii DJ]
gi|226721778|gb|ACO80949.1| histone-like bacterial DNA-binding protein [Azotobacter
vinelandii DJ]
Length = 90
Score = 93.7 bits (232), Expect = 7e-18, Method: Composition-based stats.
Identities = 29/91 (31%), Positives = 46/91 (50%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K L IA+K L +++N +LEE+T AL V + GFG+F R R AR
Sbjct: 1 MRKPELAAAIAEKT-DLTRDQANRVLNAMLEEITSALNRKDSVTLVGFGTFVQRHRGART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
+ P + + + F+ GK+L++ +N
Sbjct: 60 GKNPQTGQPVKIRASNTVAFKPGKSLRDAVN 90
>gi|298368833|ref|ZP_06980151.1| DNA-binding protein HU-beta [Neisseria sp. oral taxon 014 str.
F0314]
gi|298282836|gb|EFI24323.1| DNA-binding protein HU-beta [Neisseria sp. oral taxon 014 str.
F0314]
Length = 89
Score = 93.7 bits (232), Expect = 7e-18, Method: Composition-based stats.
Identities = 33/90 (36%), Positives = 47/90 (52%), Gaps = 1/90 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI IA++ ++ K ++ +T AL NG V + GFG+F V +RA R
Sbjct: 1 MNKSELIEAIAQE-AGISKAAAAKALDATTNAVTNALKNGDTVTLVGFGTFYVGERAERQ 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P +++ P FRAGK LK+ L
Sbjct: 60 GRNPKTGAPLTIAAAKTPKFRAGKALKDAL 89
>gi|254509429|ref|ZP_05121509.1| integration host factor, alpha subunit [Vibrio parahaemolyticus
16]
gi|219547647|gb|EED24692.1| integration host factor, alpha subunit [Vibrio parahaemolyticus
16]
Length = 98
Score = 93.7 bits (232), Expect = 7e-18, Method: Composition-based stats.
Identities = 27/91 (29%), Positives = 49/91 (53%), Gaps = 1/91 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ L + +K+ + +D ++ V EE+ +AL G +V++ GFG+F +R + R
Sbjct: 4 TKADLAENLFEKH-GFSKRDAKETVEAFFEEVRKALEGGEQVKLSGFGNFDLRDKNERPG 62
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P + I + + V FR G+ LK R+ +
Sbjct: 63 RNPKTGEDIPISARRVVTFRPGQKLKARVEN 93
>gi|187929051|ref|YP_001899538.1| integration host factor subunit alpha [Ralstonia pickettii 12J]
gi|187725941|gb|ACD27106.1| integration host factor, alpha subunit [Ralstonia pickettii 12J]
Length = 138
Score = 93.7 bits (232), Expect = 7e-18, Method: Composition-based stats.
Identities = 23/89 (25%), Positives = 45/89 (50%), Gaps = 1/89 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ L + ++ LN ++ + +V + + +AL G V++ GFG+F +R + R
Sbjct: 39 TKAELAEMLFEQ-VGLNKRESKDMVEAFFDVIREALEQGDSVKLSGFGNFQLRDKPQRPG 97
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P ++I + + V F A + LK +
Sbjct: 98 RNPKTGEIIPITARRVVTFHASQKLKALV 126
>gi|227879097|ref|ZP_03996986.1| DNA-binding protein HU [Lactobacillus crispatus JV-V01]
gi|256843086|ref|ZP_05548574.1| DNA-binding protein II HB [Lactobacillus crispatus 125-2-CHN]
gi|256850262|ref|ZP_05555691.1| DNA-binding protein II HB [Lactobacillus crispatus MV-1A-US]
gi|262046346|ref|ZP_06019308.1| DNA-binding protein II HB [Lactobacillus crispatus MV-3A-US]
gi|293379769|ref|ZP_06625901.1| DNA-binding protein HU [Lactobacillus crispatus 214-1]
gi|295692882|ref|YP_003601492.1| DNA-binding protein hu [Lactobacillus crispatus ST1]
gi|227861338|gb|EEJ68968.1| DNA-binding protein HU [Lactobacillus crispatus JV-V01]
gi|256614506|gb|EEU19707.1| DNA-binding protein II HB [Lactobacillus crispatus 125-2-CHN]
gi|256712899|gb|EEU27891.1| DNA-binding protein II HB [Lactobacillus crispatus MV-1A-US]
gi|260573217|gb|EEX29775.1| DNA-binding protein II HB [Lactobacillus crispatus MV-3A-US]
gi|290923678|gb|EFE00549.1| DNA-binding protein HU [Lactobacillus crispatus 214-1]
gi|295030988|emb|CBL50467.1| DNA-binding protein HU [Lactobacillus crispatus ST1]
Length = 91
Score = 93.7 bits (232), Expect = 7e-18, Method: Composition-based stats.
Identities = 33/90 (36%), Positives = 50/90 (55%), Gaps = 1/90 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ L+ +A K KL + V V+ +L+ + + LA G +V++ GFG+F VR RAAR
Sbjct: 3 NKAELVSEVASKT-KLTKKQVANTVDAILDSIQENLAKGEKVQLIGFGTFEVRHRAARKG 61
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P I + VP F+ GK LK+ +
Sbjct: 62 RNPQTGDEIEIPASEVPAFKPGKALKDAVK 91
>gi|126454482|ref|YP_001066011.1| integration host factor subunit alpha [Burkholderia pseudomallei
1106a]
gi|167845972|ref|ZP_02471480.1| integration host factor subunit alpha [Burkholderia pseudomallei
B7210]
gi|242316112|ref|ZP_04815128.1| integration host factor alpha subunit [Burkholderia pseudomallei
1106b]
gi|126228124|gb|ABN91664.1| integration host factor alpha subunit [Burkholderia pseudomallei
1106a]
gi|242139351|gb|EES25753.1| integration host factor alpha subunit [Burkholderia pseudomallei
1106b]
Length = 134
Score = 93.7 bits (232), Expect = 7e-18, Method: Composition-based stats.
Identities = 25/91 (27%), Positives = 44/91 (48%), Gaps = 1/91 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ L + + LN ++ + +V E + AL NG V++ GFG+F +R + R
Sbjct: 37 TKAELAELLFD-SVGLNKREAKDMVEAFFEVIRDALENGESVKLSGFGNFQLRDKPQRPG 95
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P + I + + V F A + LK + +
Sbjct: 96 RNPKTGEAIPIAARRVVTFHASQKLKALVEN 126
>gi|76811001|ref|YP_333297.1| integration host factor subunit alpha [Burkholderia pseudomallei
1710b]
gi|167738844|ref|ZP_02411618.1| integration host factor subunit alpha [Burkholderia pseudomallei
14]
gi|167894550|ref|ZP_02481952.1| integration host factor subunit alpha [Burkholderia pseudomallei
7894]
gi|167911190|ref|ZP_02498281.1| integration host factor subunit alpha [Burkholderia pseudomallei
112]
gi|167919213|ref|ZP_02506304.1| integration host factor subunit alpha [Burkholderia pseudomallei
BCC215]
gi|254261246|ref|ZP_04952300.1| integration host factor alpha subunit [Burkholderia pseudomallei
1710a]
gi|254297833|ref|ZP_04965286.1| integration host factor alpha subunit [Burkholderia pseudomallei
406e]
gi|76580454|gb|ABA49929.1| integration host factor, alpha subunit [Burkholderia pseudomallei
1710b]
gi|157807473|gb|EDO84643.1| integration host factor alpha subunit [Burkholderia pseudomallei
406e]
gi|254219935|gb|EET09319.1| integration host factor alpha subunit [Burkholderia pseudomallei
1710a]
Length = 134
Score = 93.7 bits (232), Expect = 7e-18, Method: Composition-based stats.
Identities = 25/91 (27%), Positives = 44/91 (48%), Gaps = 1/91 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ L + + LN ++ + +V E + AL NG V++ GFG+F +R + R
Sbjct: 37 TKAELAELLFD-SVGLNKREAKDMVEAFFEVIRDALENGESVKLSGFGNFQLRDKPQRPG 95
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P + I + + V F A + LK + +
Sbjct: 96 RNPKTGEAIPIAARRVVTFHASQKLKALVEN 126
>gi|238027725|ref|YP_002911956.1| integration host factor subunit alpha [Burkholderia glumae BGR1]
gi|237876919|gb|ACR29252.1| Integration host factor alpha subunit [Burkholderia glumae BGR1]
Length = 133
Score = 93.7 bits (232), Expect = 7e-18, Method: Composition-based stats.
Identities = 26/95 (27%), Positives = 45/95 (47%), Gaps = 1/95 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ L + + LN ++ + +V E + AL NG V++ GFG+F +R + R
Sbjct: 36 TKAELAELLFD-SVGLNKREAKDMVEAFFEVIRDALENGESVKLSGFGNFQLRDKPQRPG 94
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDST 96
R P + I + + V F A + LK + + T
Sbjct: 95 RNPKTGEAIPIAARRVVTFHASQKLKALVENGSDT 129
>gi|118594696|ref|ZP_01552043.1| Integration host factor, beta subunit [Methylophilales bacterium
HTCC2181]
gi|118440474|gb|EAV47101.1| Integration host factor, beta subunit [Methylophilales bacterium
HTCC2181]
Length = 92
Score = 93.7 bits (232), Expect = 7e-18, Method: Composition-based stats.
Identities = 41/91 (45%), Positives = 59/91 (64%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI +A + +L ++D E V +L+ M+QAL N R+EIRGFGSFS+ R +R+
Sbjct: 1 MTKSKLINILASRFNQLVHKDAELSVKAILDSMSQALINKDRIEIRGFGSFSLNFRPSRV 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + + V EK VP F+AGK L+ R++
Sbjct: 61 GRNPKSGAQVHVPEKFVPHFKAGKELRVRVD 91
>gi|120610349|ref|YP_970027.1| histone family protein DNA-binding protein [Acidovorax citrulli
AAC00-1]
gi|326316509|ref|YP_004234181.1| histone family protein DNA-binding protein [Acidovorax avenae
subsp. avenae ATCC 19860]
gi|120588813|gb|ABM32253.1| histone family protein DNA-binding protein [Acidovorax citrulli
AAC00-1]
gi|323373345|gb|ADX45614.1| histone family protein DNA-binding protein [Acidovorax avenae
subsp. avenae ATCC 19860]
Length = 90
Score = 93.7 bits (232), Expect = 7e-18, Method: Composition-based stats.
Identities = 36/91 (39%), Positives = 50/91 (54%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI IA N ++ + + ++E + + L GG V + GFG+F+V KRAAR
Sbjct: 1 MNKSELIEQIAT-NADISKAAAARALESMIESVKKTLKKGGTVSLVGFGTFAVGKRAART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P I ++ VP FR GK LK+ LN
Sbjct: 60 GRNPRTGDTIKIKAAKVPKFRPGKALKDALN 90
>gi|329907561|ref|ZP_08274684.1| Integration host factor alpha subunit [Oxalobacteraceae bacterium
IMCC9480]
gi|327546938|gb|EGF31844.1| Integration host factor alpha subunit [Oxalobacteraceae bacterium
IMCC9480]
Length = 137
Score = 93.7 bits (232), Expect = 7e-18, Method: Composition-based stats.
Identities = 24/92 (26%), Positives = 45/92 (48%), Gaps = 1/92 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ L + ++ LN ++ + +V +E+ AL G V++ GFG+F +R + R
Sbjct: 38 TKAELAELLFEQ-VGLNKREAKDMVETFFDEIRDALERGELVKLSGFGNFQLRDKPQRPG 96
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLNSP 93
R P + I + + V F A + LK + +
Sbjct: 97 RNPKTGEEIPITARRVVTFHASQKLKSMVENE 128
>gi|292905267|ref|YP_003541138.1| Histone-like DNA-binding protein [Anabaena variabilis ATCC 29413]
gi|75705005|gb|ABA24680.1| Histone-like DNA-binding protein [Anabaena variabilis ATCC 29413]
Length = 97
Score = 93.7 bits (232), Expect = 7e-18, Method: Composition-based stats.
Identities = 29/90 (32%), Positives = 47/90 (52%), Gaps = 1/90 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI +A K ++ + E ++N + + + +ANGG+V + GFGSF R R R
Sbjct: 1 MNKAELIQAVAAK-ANVSQKQAETVLNATTDTIVETVANGGKVILVGFGSFEARARKERE 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P + + + VP F GK+ K +
Sbjct: 60 GRNPKTNEKMIIPATTVPAFSPGKHFKTEV 89
>gi|309782533|ref|ZP_07677256.1| integration host factor, alpha subunit [Ralstonia sp. 5_7_47FAA]
gi|308918624|gb|EFP64298.1| integration host factor, alpha subunit [Ralstonia sp. 5_7_47FAA]
Length = 138
Score = 93.7 bits (232), Expect = 8e-18, Method: Composition-based stats.
Identities = 23/89 (25%), Positives = 45/89 (50%), Gaps = 1/89 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ L + ++ LN ++ + +V + + +AL G V++ GFG+F +R + R
Sbjct: 39 TKAELAEMLFEQ-VGLNKRESKDMVEAFFDVIREALEQGDSVKLSGFGNFQLRDKPQRPG 97
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P ++I + + V F A + LK +
Sbjct: 98 RNPKTGEIIPITARRVVTFHASQKLKALV 126
>gi|288904847|ref|YP_003430069.1| DNA-binding protein HU [Streptococcus gallolyticus UCN34]
gi|306830879|ref|ZP_07464041.1| DNA-binding protein HU [Streptococcus gallolyticus subsp.
gallolyticus TX20005]
gi|325977779|ref|YP_004287495.1| DNA-binding protein HU [Streptococcus gallolyticus subsp.
gallolyticus ATCC BAA-2069]
gi|288731573|emb|CBI13128.1| DNA-binding protein HU [Streptococcus gallolyticus UCN34]
gi|304426902|gb|EFM30012.1| DNA-binding protein HU [Streptococcus gallolyticus subsp.
gallolyticus TX20005]
gi|325177707|emb|CBZ47751.1| DNA-binding protein HU [Streptococcus gallolyticus subsp.
gallolyticus ATCC BAA-2069]
Length = 91
Score = 93.7 bits (232), Expect = 8e-18, Method: Composition-based stats.
Identities = 31/90 (34%), Positives = 49/90 (54%), Gaps = 1/90 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K LI +A+ +L +D V+ + + L+ G +V++ GFG+F VR+RAAR
Sbjct: 3 NKQDLIAKVAEAT-ELTKKDSAAAVDAVFSAIESFLSEGEKVQLIGFGNFEVRERAARKG 61
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + I + VP F+AGK LK+ +
Sbjct: 62 RNPQTGEEIEIAASKVPAFKAGKALKDAVK 91
>gi|46581376|ref|YP_012184.1| integration host factor subunit beta [Desulfovibrio vulgaris str.
Hildenborough]
gi|120601447|ref|YP_965847.1| histone family protein DNA-binding protein [Desulfovibrio
vulgaris DP4]
gi|46450798|gb|AAS97444.1| integration host factor, beta subunit [Desulfovibrio vulgaris
str. Hildenborough]
gi|120561676|gb|ABM27420.1| histone family protein DNA-binding protein [Desulfovibrio
vulgaris DP4]
gi|311235034|gb|ADP87888.1| histone family protein DNA-binding protein [Desulfovibrio
vulgaris RCH1]
Length = 91
Score = 93.7 bits (232), Expect = 8e-18, Method: Composition-based stats.
Identities = 36/91 (39%), Positives = 51/91 (56%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS L+ +A+ + ++ ++ IVN+ + + AL G RVEIRGFGSF V+
Sbjct: 1 MNKSELVKMLAENH-EIPAEESSVIVNLFFDSVRDALLQGDRVEIRGFGSFKVKGYRGYK 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + V K +P FRAGK LKE +N
Sbjct: 60 GRNPKTGDNVEVPPKRLPVFRAGKELKEIIN 90
>gi|229193754|ref|ZP_04320694.1| DNA-binding protein HU [Bacillus cereus ATCC 10876]
gi|228589726|gb|EEK47605.1| DNA-binding protein HU [Bacillus cereus ATCC 10876]
Length = 93
Score = 93.7 bits (232), Expect = 8e-18, Method: Composition-based stats.
Identities = 35/91 (38%), Positives = 53/91 (58%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ L +A+K +L +D +L+ +T ALANG +V+I GFG+F VR+R+AR
Sbjct: 4 MNKTELTKVVAEK-AELTQKDAAAATQAVLDTITNALANGEKVQILGFGTFEVRERSART 62
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + + + P F+AGK LKE +
Sbjct: 63 GRNPQTGEEMQIAASKAPAFKAGKELKEAVK 93
>gi|209695216|ref|YP_002263145.1| integration host factor subunit alpha [Aliivibrio salmonicida
LFI1238]
gi|226707367|sp|B6EN06|IHFA_ALISL RecName: Full=Integration host factor subunit alpha;
Short=IHF-alpha
gi|208009168|emb|CAQ79416.1| integration host factor alpha-subunit (IHF-alpha) [Aliivibrio
salmonicida LFI1238]
Length = 98
Score = 93.7 bits (232), Expect = 8e-18, Method: Composition-based stats.
Identities = 29/89 (32%), Positives = 53/89 (59%), Gaps = 1/89 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ L T+ +K L+ +D ++ V + EE+ QAL +G +V++ GFG+F +R+++ R
Sbjct: 4 TKADLAETLFEK-VGLSKRDAKETVEVFFEEIKQALESGEQVKLSGFGNFDLREKSERPG 62
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P + I + + V F+ G+ LK R+
Sbjct: 63 RNPKTGEDIPISARRVVTFKPGQKLKARV 91
>gi|126438744|ref|YP_001058758.1| integration host factor subunit alpha [Burkholderia pseudomallei
668]
gi|126218237|gb|ABN81743.1| integration host factor alpha subunit [Burkholderia pseudomallei
668]
Length = 134
Score = 93.7 bits (232), Expect = 8e-18, Method: Composition-based stats.
Identities = 25/91 (27%), Positives = 44/91 (48%), Gaps = 1/91 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ L + + LN ++ + +V E + AL NG V++ GFG+F +R + R
Sbjct: 37 TKAELAELLFD-SVGLNKREAKDMVEAFFEVIRDALENGESVKLSGFGNFQLRDKPQRPG 95
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P + I + + V F A + LK + +
Sbjct: 96 RNPKTGEAIPIAARRVVTFHASQKLKALVEN 126
>gi|319762738|ref|YP_004126675.1| histone family protein DNA-binding protein [Alicycliphilus
denitrificans BC]
gi|317117299|gb|ADU99787.1| histone family protein DNA-binding protein [Alicycliphilus
denitrificans BC]
Length = 90
Score = 93.7 bits (232), Expect = 8e-18, Method: Composition-based stats.
Identities = 31/91 (34%), Positives = 47/91 (51%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI +A + ++ E+ + + L GG V + GFGS+SV KRAAR+
Sbjct: 1 MNKSDLIERMA-SDADISKAAAERALESFTTAVQTTLKKGGTVALVGFGSWSVTKRAARV 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + + ++ + P F GK K+ LN
Sbjct: 60 GRNPKTGEALKIKARKAPKFTPGKAFKDALN 90
>gi|330816675|ref|YP_004360380.1| Integration host factor alpha subunit [Burkholderia gladioli BSR3]
gi|327369068|gb|AEA60424.1| Integration host factor alpha subunit [Burkholderia gladioli BSR3]
Length = 133
Score = 93.7 bits (232), Expect = 8e-18, Method: Composition-based stats.
Identities = 26/95 (27%), Positives = 45/95 (47%), Gaps = 1/95 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ L + + LN ++ + +V E + AL NG V++ GFG+F +R + R
Sbjct: 36 TKAELAELLFD-SVGLNKREAKDMVEAFFEVIRDALENGESVKLSGFGNFQLRDKPQRPG 94
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDST 96
R P + I + + V F A + LK + + T
Sbjct: 95 RNPKTGEAIPIAARRVVTFHASQKLKALVENGSDT 129
>gi|111225184|ref|YP_715978.1| DNA-binding protein HU-beta, NS1 (HU-1) [Frankia alni ACN14a]
gi|111152716|emb|CAJ64459.1| DNA-binding protein HU-beta, NS1 (HU-1) [Frankia alni ACN14a]
Length = 94
Score = 93.7 bits (232), Expect = 8e-18, Method: Composition-based stats.
Identities = 30/90 (33%), Positives = 47/90 (52%), Gaps = 1/90 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS L+ IA++ + K V+ + + + +A+A+G +V I GFG F +RAAR
Sbjct: 1 MNKSQLVDRIAQQIEG-GRSNATKAVDAVFDAIQEAVASGEKVTITGFGVFERVERAART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P + + V +VP FR G K +
Sbjct: 60 GRNPATGEPVHVAASVVPKFRPGSEFKSSV 89
>gi|295699910|ref|YP_003607803.1| histone family protein DNA-binding protein [Burkholderia sp.
CCGE1002]
gi|295439123|gb|ADG18292.1| histone family protein DNA-binding protein [Burkholderia sp.
CCGE1002]
Length = 92
Score = 93.7 bits (232), Expect = 8e-18, Method: Composition-based stats.
Identities = 30/92 (32%), Positives = 49/92 (53%), Gaps = 1/92 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K LI +A + + + ++ ++E +T+A+ +G V++ GFGSFS RAAR+
Sbjct: 1 MNKQELIDAVAAATGE-SKAATGQTIDAIVEAVTKAVVSGDTVQLVGFGSFSTGARAARV 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P + I + F AGK KE +N+
Sbjct: 60 GRNPSTGEEIQIAAAKTVKFTAGKAFKEAVNA 91
>gi|33152141|ref|NP_873494.1| DNA-binding protein HU [Haemophilus ducreyi 35000HP]
gi|33148363|gb|AAP95883.1| DNA-binding protein HU [Haemophilus ducreyi 35000HP]
Length = 90
Score = 93.7 bits (232), Expect = 8e-18, Method: Composition-based stats.
Identities = 30/91 (32%), Positives = 48/91 (52%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI I L+ +D + + L ++ +L NG V++ GFG+F V +R+ R+
Sbjct: 1 MNKTELIDAIVADTA-LSKKDAKAALEATLNAISGSLKNGDSVQLIGFGTFKVNERSERI 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + I + VP F AGK LK+ +
Sbjct: 60 GRNPRTGEEIKIAASKVPAFVAGKALKDLVK 90
>gi|229070625|ref|ZP_04203863.1| DNA-binding protein HU [Bacillus cereus F65185]
gi|228712530|gb|EEL64467.1| DNA-binding protein HU [Bacillus cereus F65185]
Length = 93
Score = 93.7 bits (232), Expect = 8e-18, Method: Composition-based stats.
Identities = 36/91 (39%), Positives = 53/91 (58%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ L +A+K +L +D LL+ +T ALANG +V+I GFG+F VR+R+AR
Sbjct: 4 MNKTELTKVVAEK-AELTQKDAAAATQALLDTVTNALANGEKVQILGFGTFEVRERSART 62
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + + + P F+AGK LKE +
Sbjct: 63 GRNPQTGEEMQIAASKAPAFKAGKELKEAVK 93
>gi|154248306|ref|YP_001419264.1| integration host factor subunit alpha [Xanthobacter autotrophicus
Py2]
gi|226709760|sp|A7INL3|IHFA_XANP2 RecName: Full=Integration host factor subunit alpha;
Short=IHF-alpha
gi|154162391|gb|ABS69607.1| integration host factor, alpha subunit [Xanthobacter
autotrophicus Py2]
Length = 105
Score = 93.7 bits (232), Expect = 8e-18, Method: Composition-based stats.
Identities = 26/90 (28%), Positives = 49/90 (54%), Gaps = 1/90 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
++ L + ++ L+ + ++V M+L+E+ LA G V++ FGSF VR++ R+
Sbjct: 7 TRADLCEAVYQQ-VGLSRTESAQLVEMVLKEIADCLARGETVKLSSFGSFVVREKGERVG 65
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + + +E + V F+ LK R+N
Sbjct: 66 RNPKTGEEVPIEPRRVMVFKPSSILKHRIN 95
>gi|92113928|ref|YP_573856.1| integration host factor, alpha subunit [Chromohalobacter
salexigens DSM 3043]
gi|123387450|sp|Q1QWK1|IHFA_CHRSD RecName: Full=Integration host factor subunit alpha;
Short=IHF-alpha
gi|91797018|gb|ABE59157.1| integration host factor, alpha subunit [Chromohalobacter
salexigens DSM 3043]
Length = 102
Score = 93.7 bits (232), Expect = 8e-18, Method: Composition-based stats.
Identities = 23/89 (25%), Positives = 43/89 (48%), Gaps = 1/89 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ L + + + ++ + +V EE+ L +V++ GFG+F +R + R
Sbjct: 5 TKADLAEHLHAEL-GFSKREAKSMVEAFFEEIRSCLRENEQVKLSGFGNFDLRDKRERPG 63
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P + I + + V FR G+ LK R+
Sbjct: 64 RNPKTGEEIPISARRVVTFRPGQKLKARV 92
>gi|303327861|ref|ZP_07358301.1| integration host factor, beta subunit [Desulfovibrio sp.
3_1_syn3]
gi|302862222|gb|EFL85156.1| integration host factor, beta subunit [Desulfovibrio sp.
3_1_syn3]
Length = 91
Score = 93.7 bits (232), Expect = 8e-18, Method: Composition-based stats.
Identities = 37/92 (40%), Positives = 55/92 (59%), Gaps = 1/92 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI +A++ + + D +VN ++ M ++L G R+EIRGFGSF +++
Sbjct: 1 MNKSELIKALAEET-NIPFDDASLVVNTFIDAMKKSLIAGERIEIRGFGSFKIKEYGGYA 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P + +SV K +PFFRAGK LKE +N
Sbjct: 60 GRNPKTGESVSVIPKRLPFFRAGKELKEFINQ 91
>gi|170741538|ref|YP_001770193.1| histone family protein DNA-binding protein [Methylobacterium sp.
4-46]
gi|168195812|gb|ACA17759.1| histone family protein DNA-binding protein [Methylobacterium sp.
4-46]
Length = 102
Score = 93.7 bits (232), Expect = 8e-18, Method: Composition-based stats.
Identities = 32/91 (35%), Positives = 52/91 (57%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M+++ LI +A+ NP L Y + +V +L+ +T+AL G ++E+RGFG+ R AR
Sbjct: 1 MLRAQLIQRVAELNPHLPYSQADAVVRAILDRITEALMEGDQIELRGFGALKTTAREARR 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
+R P + + V K FRA + + RLN
Sbjct: 61 SRNPRTGEAVEVPAKRDVAFRASREMNGRLN 91
>gi|254494814|ref|ZP_01051666.2| DNA-binding protein [Polaribacter sp. MED152]
gi|213690396|gb|EAQ41094.2| DNA-binding protein [Polaribacter sp. MED152]
Length = 117
Score = 93.7 bits (232), Expect = 8e-18, Method: Composition-based stats.
Identities = 32/91 (35%), Positives = 47/91 (51%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI +A + ++ + + + +T AL G +V + GFG+FSV RAAR
Sbjct: 28 MNKSDLIDAMAA-DAGISKVAAKAALESFTDNVTSALKGGDKVALVGFGTFSVSHRAARS 86
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P K I + K V F+AG L + +N
Sbjct: 87 GRNPQTGKTIQIAAKNVAKFKAGAGLSDAVN 117
>gi|158423917|ref|YP_001525209.1| integration host factor subunit alpha [Azorhizobium caulinodans ORS
571]
gi|172047953|sp|A8I5K8|IHFA_AZOC5 RecName: Full=Integration host factor subunit alpha;
Short=IHF-alpha
gi|158330806|dbj|BAF88291.1| integration host factor alpha subunit [Azorhizobium caulinodans ORS
571]
Length = 105
Score = 93.7 bits (232), Expect = 8e-18, Method: Composition-based stats.
Identities = 26/98 (26%), Positives = 48/98 (48%), Gaps = 1/98 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
+ ++ L + ++ L+ + +V M+L E+ LA G V++ FGSF VR + R+
Sbjct: 6 ITRADLCEAVYQQ-VGLSRTESAALVEMVLREIADCLAKGETVKLSSFGSFVVRDKGQRV 64
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDSTLS 98
R P + + +E + V F+ LK R+N +
Sbjct: 65 GRNPKTGEEVPIEPRRVMVFKPSSILKNRINGRTGKAA 102
>gi|221067879|ref|ZP_03543984.1| histone family protein DNA-binding protein [Comamonas
testosteroni KF-1]
gi|264677812|ref|YP_003277718.1| histone-like DNA-binding protein [Comamonas testosteroni CNB-2]
gi|299531632|ref|ZP_07045037.1| histone-like DNA-binding protein [Comamonas testosteroni S44]
gi|220712902|gb|EED68270.1| histone family protein DNA-binding protein [Comamonas
testosteroni KF-1]
gi|262208324|gb|ACY32422.1| histone-like DNA-binding protein [Comamonas testosteroni CNB-2]
gi|298720348|gb|EFI61300.1| histone-like DNA-binding protein [Comamonas testosteroni S44]
Length = 90
Score = 93.7 bits (232), Expect = 8e-18, Method: Composition-based stats.
Identities = 34/91 (37%), Positives = 50/91 (54%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI IA N ++ + ++ ++ + + L GG V + GFG+F+V KRAAR
Sbjct: 1 MNKTELIEHIAN-NADISKAAAARALDSTIDAVKKTLKKGGTVSLVGFGTFAVGKRAART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P I ++ VP FR GK LK+ LN
Sbjct: 60 GRNPRTGDSIKIKAAKVPKFRPGKALKDALN 90
>gi|150014983|ref|YP_001307237.1| histone family protein DNA-binding protein [Clostridium
beijerinckii NCIMB 8052]
gi|118264|sp|P05385|DBH_CLOPA RecName: Full=DNA-binding protein HU
gi|149901448|gb|ABR32281.1| histone family protein DNA-binding protein [Clostridium
beijerinckii NCIMB 8052]
gi|224155|prf||1011218A protein II,DNA binding
Length = 91
Score = 93.7 bits (232), Expect = 8e-18, Method: Composition-based stats.
Identities = 37/92 (40%), Positives = 60/92 (65%), Gaps = 1/92 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI ++A+K+ KL +D E + L+E + +AL G +V++ GFG+F R+RAAR
Sbjct: 1 MNKAELITSMAEKS-KLTKKDAELALKALIESVEEALEKGEKVQLVGFGTFETRERAARE 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P ++VI++ VP F+AGK K+++N
Sbjct: 60 GRNPRTKEVINIPATTVPVFKAGKEFKDKVNK 91
>gi|327479102|gb|AEA82412.1| HU family DNA-binding protein [Pseudomonas stutzeri DSM 4166]
Length = 90
Score = 93.7 bits (232), Expect = 8e-18, Method: Composition-based stats.
Identities = 29/91 (31%), Positives = 48/91 (52%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K L IA+K L+ +++N +L+E+T AL V + GFG+F R R AR
Sbjct: 1 MRKPELAAAIAEK-ADLSKDQANRVLNAVLDEITNALNRKDSVTLVGFGTFVQRHRGART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
+ P + ++++ F+ GK LK+ +N
Sbjct: 60 GKNPQTGQPVTIKASNTVAFKPGKMLKDAVN 90
>gi|291279581|ref|YP_003496416.1| integration host factor, subunit alpha [Deferribacter
desulfuricans SSM1]
gi|290754283|dbj|BAI80660.1| integration host factor, alpha subunit [Deferribacter
desulfuricans SSM1]
Length = 91
Score = 93.7 bits (232), Expect = 8e-18, Method: Composition-based stats.
Identities = 23/92 (25%), Positives = 48/92 (52%), Gaps = 1/92 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ ++ I + + +D+ +V+M+ M + + +G V++ GFG+F V+ R R+
Sbjct: 1 MTKADIVEKIYNQL-GITKKDIANVVDMVFTTMREEILSGNSVKVSGFGNFEVKVRGRRV 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P + + + + V F+ KE +N+
Sbjct: 60 GRNPKTGEEVIIPPRYVVSFKPSNLFKEEVNA 91
>gi|119946824|ref|YP_944504.1| DNA-binding protein HU alpha subunit [Psychromonas ingrahamii 37]
gi|119865428|gb|ABM04905.1| DNA-binding protein HU alpha subunit [Psychromonas ingrahamii 37]
Length = 91
Score = 93.7 bits (232), Expect = 8e-18, Method: Composition-based stats.
Identities = 34/92 (36%), Positives = 51/92 (55%), Gaps = 1/92 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI IA+K +L + + ++ +T +L +G V++ GFG+F V RAAR
Sbjct: 1 MNKTQLITDIAEK-AELTKVQAKAALEQMMTSVTDSLKDGEPVQLIGFGTFKVNHRAART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P I ++ VP F AGK+LKE +N
Sbjct: 60 GRNPQTGADIQIKAANVPAFVAGKSLKEAVNK 91
>gi|297568841|ref|YP_003690185.1| histone family protein DNA-binding protein [Desulfurivibrio
alkaliphilus AHT2]
gi|296924756|gb|ADH85566.1| histone family protein DNA-binding protein [Desulfurivibrio
alkaliphilus AHT2]
Length = 95
Score = 93.7 bits (232), Expect = 9e-18, Method: Composition-based stats.
Identities = 22/93 (23%), Positives = 47/93 (50%), Gaps = 1/93 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ LI + +++ L+ ++V + L +L G + + GFG FSV+++ +R
Sbjct: 4 TKADLIQEVYQRH-NLSKSQATEVVEIFLSVAKDSLQEGEDLLLSGFGKFSVKQKNSRRG 62
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLNSPD 94
R P + + + + V F+ L++R+N +
Sbjct: 63 RNPQTGEELMLAPRRVITFKPSGLLRQRVNGKE 95
>gi|218891082|ref|YP_002439948.1| integration host factor subunit alpha [Pseudomonas aeruginosa
LESB58]
gi|226709740|sp|B7V312|IHFA_PSEA8 RecName: Full=Integration host factor subunit alpha;
Short=IHF-alpha
gi|218771307|emb|CAW27072.1| integration host factor, alpha subunit [Pseudomonas aeruginosa
LESB58]
Length = 100
Score = 93.7 bits (232), Expect = 9e-18, Method: Composition-based stats.
Identities = 28/97 (28%), Positives = 52/97 (53%), Gaps = 1/97 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ + + ++ LN ++ +++V + EE+ QAL +V++ GFG+F +R + R
Sbjct: 5 TKAEIAERLYEEL-GLNKREAKELVELFFEEIRQALEQNEQVKLSGFGNFDLRDKRQRPG 63
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDSTLS 98
R P + I + + V FR G+ LK R+ + T S
Sbjct: 64 RNPKTGEEIPITARRVVTFRPGQKLKARVEAYAGTKS 100
>gi|195977763|ref|YP_002123007.1| DNA-binding protein HU [Streptococcus equi subsp. zooepidemicus
MGCS10565]
gi|225868935|ref|YP_002744883.1| DNA-binding protein HU [Streptococcus equi subsp. zooepidemicus]
gi|225870057|ref|YP_002746004.1| DNA-binding protein HU [Streptococcus equi subsp. equi 4047]
gi|195974468|gb|ACG61994.1| DNA-binding protein HU [Streptococcus equi subsp. zooepidemicus
MGCS10565]
gi|225699461|emb|CAW92972.1| DNA-binding protein HU [Streptococcus equi subsp. equi 4047]
gi|225702211|emb|CAW99942.1| DNA-binding protein HU [Streptococcus equi subsp. zooepidemicus]
Length = 91
Score = 93.7 bits (232), Expect = 9e-18, Method: Composition-based stats.
Identities = 32/90 (35%), Positives = 49/90 (54%), Gaps = 1/90 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K LI +A+ +L +D V+ + + LA G +V++ GFG+F VR+RAAR
Sbjct: 3 NKQDLIAKVAEAT-ELTKKDSAAAVDAVFSAIEAFLAEGEKVQLIGFGNFEVRERAARKG 61
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + I + VP F+AGK LK+ +
Sbjct: 62 RNPQTGEEIEIAASKVPAFKAGKALKDAVK 91
>gi|83310022|ref|YP_420286.1| nucleoid DNA-binding protein [Magnetospirillum magneticum AMB-1]
gi|82944863|dbj|BAE49727.1| Bacterial nucleoid DNA-binding protein [Magnetospirillum
magneticum AMB-1]
Length = 92
Score = 93.7 bits (232), Expect = 9e-18, Method: Composition-based stats.
Identities = 32/91 (35%), Positives = 47/91 (51%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI +A + D ++ + E +T A+ +G V + GFGSFSV R AR
Sbjct: 1 MNKSELIAAVAD-GANMTKADAASAIDAVFEAITAAMKSGDDVRLVGFGSFSVSARPARE 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P K +++ F AGK+LK+ +N
Sbjct: 60 GRNPQTGKTLTIAASKSAKFTAGKSLKDTIN 90
>gi|242241106|ref|YP_002989287.1| transcriptional regulator HU subunit alpha [Dickeya dadantii
Ech703]
gi|242133163|gb|ACS87465.1| histone family protein DNA-binding protein [Dickeya dadantii
Ech703]
Length = 90
Score = 93.7 bits (232), Expect = 9e-18, Method: Composition-based stats.
Identities = 32/91 (35%), Positives = 45/91 (49%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI IA K L+ + + L +T++L G V++ GFG+F V R R
Sbjct: 1 MNKTQLIDVIADK-ADLSKTQAKAALEATLAAITESLKEGDAVQLVGFGTFKVNHRNERT 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P K I + VP F AGK LK+ +
Sbjct: 60 GRNPQTGKEIKIAAANVPAFVAGKALKDAVK 90
>gi|325274256|ref|ZP_08140370.1| histone family protein DNA-binding protein [Pseudomonas sp.
TJI-51]
gi|324100618|gb|EGB98350.1| histone family protein DNA-binding protein [Pseudomonas sp.
TJI-51]
Length = 92
Score = 93.3 bits (231), Expect = 9e-18, Method: Composition-based stats.
Identities = 32/92 (34%), Positives = 51/92 (55%), Gaps = 1/92 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ L+G +A+K+ L + +IVN +L + AL + G + + GFG FSV RAAR
Sbjct: 1 MSKAVLVGLVAEKH-GLTKAEASEIVNTVLSGIQSALVSQGSISLVGFGVFSVVDRAARN 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P + ++V + F G+ LK +N+
Sbjct: 60 GRNPNTGEPVTVAARKAVRFTPGEPLKRAVNA 91
>gi|297569511|ref|YP_003690855.1| histone family protein DNA-binding protein [Desulfurivibrio
alkaliphilus AHT2]
gi|296925426|gb|ADH86236.1| histone family protein DNA-binding protein [Desulfurivibrio
alkaliphilus AHT2]
Length = 92
Score = 93.3 bits (231), Expect = 9e-18, Method: Composition-based stats.
Identities = 36/90 (40%), Positives = 57/90 (63%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M+K LI +A++ P +D+++ ++++LE + QAL + RVEIRGFGSFSVR+R AR
Sbjct: 1 MLKRDLINAVAEEMPGFLKKDLDQALDIMLENILQALEDNRRVEIRGFGSFSVRERKART 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
+ P KV+ + + F K+LK+ L
Sbjct: 61 TKNPRTGKVMHIPPRKNVHFTMSKSLKDGL 90
>gi|325264325|ref|ZP_08131056.1| DNA-binding protein HU [Clostridium sp. D5]
gi|324030396|gb|EGB91680.1| DNA-binding protein HU [Clostridium sp. D5]
Length = 91
Score = 93.3 bits (231), Expect = 9e-18, Method: Composition-based stats.
Identities = 32/92 (34%), Positives = 55/92 (59%), Gaps = 1/92 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ L+ IA+K +++ +D EK + ++ ++ L G +V++ GFG+F V +RAAR
Sbjct: 1 MNKTELVAAIAEK-AEISKKDSEKALKAFIDVVSDQLKKGDKVQLVGFGTFEVSERAARE 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P K + + P F+AGK LK+ +N+
Sbjct: 60 GRNPQTGKTMKIAACKAPKFKAGKALKDEVNA 91
>gi|148263534|ref|YP_001230240.1| histone family protein DNA-binding protein [Geobacter
uraniireducens Rf4]
gi|146397034|gb|ABQ25667.1| histone family protein DNA-binding protein [Geobacter
uraniireducens Rf4]
Length = 93
Score = 93.3 bits (231), Expect = 9e-18, Method: Composition-based stats.
Identities = 38/92 (41%), Positives = 63/92 (68%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS L+ + + N L+ ++ E I++++ + M +AL +G +VEIRGFGSF++R R AR
Sbjct: 1 MTKSELVDKLVEVNGILSRKESEAIISIVFDSMCEALKSGEKVEIRGFGSFTIRDREARE 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
AR P + +++ + K PFF+ GK L+ER+N+
Sbjct: 61 ARNPKSGEIVKIASKKTPFFKTGKELRERVNN 92
>gi|167759629|ref|ZP_02431756.1| hypothetical protein CLOSCI_01987 [Clostridium scindens ATCC
35704]
gi|167662755|gb|EDS06885.1| hypothetical protein CLOSCI_01987 [Clostridium scindens ATCC
35704]
Length = 91
Score = 93.3 bits (231), Expect = 9e-18, Method: Composition-based stats.
Identities = 34/92 (36%), Positives = 54/92 (58%), Gaps = 1/92 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ L+ IA + +L+ +D EK + ++ +T L +V++ GFG+F V KRAAR
Sbjct: 1 MNKTELVAAIADQ-AELSKKDSEKALKAFIDVVTDELKKDHKVQLVGFGTFEVSKRAARE 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P K + +E P F+AGK LK+ +N+
Sbjct: 60 GRNPQTGKTMKIEACKAPKFKAGKALKDAVNA 91
>gi|332186781|ref|ZP_08388523.1| bacterial DNA-binding family protein [Sphingomonas sp. S17]
gi|332013114|gb|EGI55177.1| bacterial DNA-binding family protein [Sphingomonas sp. S17]
Length = 90
Score = 93.3 bits (231), Expect = 9e-18, Method: Composition-based stats.
Identities = 34/91 (37%), Positives = 49/91 (53%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K LI T+A + L D K V+ + E +T AL G V + GFG+FSV KR A
Sbjct: 1 MNKQELIATVAD-SSGLVRGDAVKAVDAVFEAITAALKKGDEVRLVGFGTFSVSKRKAST 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + ++++ P F+ GK LK+ +N
Sbjct: 60 GRNPRTGEPMTIKASSQPKFKPGKLLKDSVN 90
>gi|260779041|ref|ZP_05887933.1| integration host factor alpha subunit [Vibrio coralliilyticus
ATCC BAA-450]
gi|260605205|gb|EEX31500.1| integration host factor alpha subunit [Vibrio coralliilyticus
ATCC BAA-450]
Length = 98
Score = 93.3 bits (231), Expect = 9e-18, Method: Composition-based stats.
Identities = 27/93 (29%), Positives = 50/93 (53%), Gaps = 1/93 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ L + +K + +D ++ V EE+ +AL +G +V++ GFG+F +R++ R
Sbjct: 4 TKADLAENLFEKL-GYSKRDAKETVEAFFEEIRKALESGEQVKLSGFGNFDLREKNERPG 62
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLNSPD 94
R P + I + + V FR G+ LK R+ +
Sbjct: 63 RNPKTGEDIPISARRVVTFRPGQKLKARVENAK 95
>gi|90023476|ref|YP_529303.1| nucleoid protein Hbs [Saccharophagus degradans 2-40]
gi|89953076|gb|ABD83091.1| bacterial nucleoid protein Hbs [Saccharophagus degradans 2-40]
Length = 91
Score = 93.3 bits (231), Expect = 9e-18, Method: Composition-based stats.
Identities = 32/90 (35%), Positives = 49/90 (54%), Gaps = 1/90 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS L+ +A L+ + + V+ + + +T ALA V + GFGSF R+RAAR
Sbjct: 1 MRKSDLVEAVANA-ADLSPRQADDAVSAIFDHITNALARKDSVNLVGFGSFITRERAARQ 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P I++ ++P F+ GK LK+ L
Sbjct: 60 GRNPQTGAAINIAASVLPAFKPGKKLKDAL 89
>gi|39998222|ref|NP_954173.1| DNA-binding protein HU [Geobacter sulfurreducens PCA]
gi|39985168|gb|AAR36523.1| DNA-binding protein HU [Geobacter sulfurreducens PCA]
gi|298507158|gb|ADI85881.1| histone-like protein [Geobacter sulfurreducens KN400]
Length = 94
Score = 93.3 bits (231), Expect = 9e-18, Method: Composition-based stats.
Identities = 33/95 (34%), Positives = 47/95 (49%), Gaps = 1/95 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ L+ +A K+ L +K V ++ ++ AL G +V + GFGSF V R AR
Sbjct: 1 MTKAELVDAVA-KSANLTKAAADKAVGAVISAVSDALKKGDKVTLVGFGSFEVSTRKART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDS 95
R P K I + VP FR GK LK+ +
Sbjct: 60 GRNPQTGKEIKIAAAKVPKFRPGKALKDAVAGKKK 94
>gi|124494290|gb|ABN13185.1| non-specific DNA-binding protein HBsu [Bacillus subtilis subsp.
subtilis str. 168]
gi|124494310|gb|ABN13204.1| non-specific DNA-binding protein HBsu [Bacillus subtilis]
gi|124494330|gb|ABN13223.1| non-specific DNA-binding protein HBsu [Bacillus subtilis]
gi|124494350|gb|ABN13242.1| non-specific DNA-binding protein HBsu [Bacillus subtilis subsp.
spizizenii str. W23]
gi|124494370|gb|ABN13261.1| non-specific DNA-binding protein HBsu [Bacillus subtilis]
gi|124494390|gb|ABN13280.1| non-specific DNA-binding protein HBsu [Bacillus subtilis]
gi|124494410|gb|ABN13299.1| non-specific DNA-binding protein HBsu [Bacillus subtilis]
gi|124494429|gb|ABN13317.1| non-specific DNA-binding protein HBsu [Bacillus subtilis]
gi|124494450|gb|ABN13337.1| non-specific DNA-binding protein HBsu [Bacillus subtilis subsp.
subtilis str. SMY]
gi|124494470|gb|ABN13356.1| non-specific DNA-binding protein HBsu [Bacillus subtilis]
gi|124494490|gb|ABN13375.1| non-specific DNA-binding protein HBsu [Bacillus subtilis]
gi|124494510|gb|ABN13394.1| non-specific DNA-binding protein HBsu [Bacillus subtilis]
gi|124494530|gb|ABN13413.1| non-specific DNA-binding protein HBsu [Bacillus subtilis]
Length = 86
Score = 93.3 bits (231), Expect = 9e-18, Method: Composition-based stats.
Identities = 29/84 (34%), Positives = 51/84 (60%), Gaps = 1/84 (1%)
Query: 7 IGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLARAPLA 66
I +A+ + +L+ +D K V+ + + + AL NG ++++ GFG+F VR+R+AR R P
Sbjct: 1 INAVAEAS-ELSKKDATKAVDSVFDTILDALKNGDKIQLIGFGNFEVRERSARKGRNPQT 59
Query: 67 QKVISVEEKMVPFFRAGKNLKERL 90
+ I + VP F+ GK LK+ +
Sbjct: 60 GEEIEIPASKVPAFKPGKALKDAV 83
>gi|146319301|ref|YP_001199013.1| nucleoid DNA-binding protein [Streptococcus suis 05ZYH33]
gi|146321504|ref|YP_001201215.1| nucleoid DNA-binding protein [Streptococcus suis 98HAH33]
gi|223932925|ref|ZP_03624920.1| histone family protein DNA-binding protein [Streptococcus suis
89/1591]
gi|253752334|ref|YP_003025475.1| DNA-binding protein HU [Streptococcus suis SC84]
gi|253754160|ref|YP_003027301.1| DNA-binding protein HU [Streptococcus suis P1/7]
gi|253756094|ref|YP_003029234.1| DNA-binding protein HU [Streptococcus suis BM407]
gi|330833271|ref|YP_004402096.1| nucleoid DNA-binding protein [Streptococcus suis ST3]
gi|145690107|gb|ABP90613.1| nucleoid DNA-binding protein [Streptococcus suis 05ZYH33]
gi|145692310|gb|ABP92815.1| nucleoid DNA-binding protein [Streptococcus suis 98HAH33]
gi|223898371|gb|EEF64737.1| histone family protein DNA-binding protein [Streptococcus suis
89/1591]
gi|251816623|emb|CAZ52263.1| DNA-binding protein HU [Streptococcus suis SC84]
gi|251818558|emb|CAZ56391.1| DNA-binding protein HU [Streptococcus suis BM407]
gi|251820406|emb|CAR47035.1| DNA-binding protein HU [Streptococcus suis P1/7]
gi|292558933|gb|ADE31934.1| Histone-like bacterial DNA-binding protein [Streptococcus suis
GZ1]
gi|329307494|gb|AEB81910.1| nucleoid DNA-binding protein [Streptococcus suis ST3]
Length = 91
Score = 93.3 bits (231), Expect = 9e-18, Method: Composition-based stats.
Identities = 31/90 (34%), Positives = 47/90 (52%), Gaps = 1/90 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K LI +A+ L +D V+ + + LA G +V++ GFG+F VR+R+AR
Sbjct: 3 NKQDLIAKVAEATS-LTKKDSAAAVDAVFGAVADYLAAGEKVQLIGFGNFEVRERSARTG 61
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P I + VP F+AGK LK+ +
Sbjct: 62 RNPQTGAEIKIAASKVPAFKAGKALKDAVK 91
>gi|190015583|ref|YP_001967304.1| DNA-binding protein HU [Bacillus cereus]
gi|208702183|ref|YP_002267334.1| DNA-binding protein HU 1 [Bacillus cereus H3081.97]
gi|217956824|ref|YP_002335918.1| DNA-binding protein HU 1 [Bacillus cereus AH187]
gi|229142798|ref|ZP_04271251.1| DNA-binding protein HU [Bacillus cereus BDRD-ST26]
gi|116584490|gb|ABK00607.1| DNA-binding protein HU [Bacillus cereus]
gi|208658038|gb|ACI30408.1| DNA-binding protein HU 1 [Bacillus cereus H3081.97]
gi|217068469|gb|ACJ82717.1| DNA-binding protein HU 1 [Bacillus cereus AH187]
gi|228640666|gb|EEK97044.1| DNA-binding protein HU [Bacillus cereus BDRD-ST26]
Length = 90
Score = 93.3 bits (231), Expect = 9e-18, Method: Composition-based stats.
Identities = 34/91 (37%), Positives = 52/91 (57%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ L IA+K +L +D +L+ +T ALAN +V+I GFG+F VR+R+AR
Sbjct: 1 MNKTDLTKVIAEK-AELTQKDAAAATQAVLDTITTALANEEKVQILGFGTFEVRERSART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + + + P F+AGK LK+ +
Sbjct: 60 GRNPQTGEEMQIAASKAPAFKAGKELKDAVK 90
>gi|159899915|ref|YP_001546162.1| histone family protein DNA-binding protein [Herpetosiphon
aurantiacus ATCC 23779]
gi|159892954|gb|ABX06034.1| histone family protein DNA-binding protein [Herpetosiphon
aurantiacus ATCC 23779]
Length = 92
Score = 93.3 bits (231), Expect = 1e-17, Method: Composition-based stats.
Identities = 38/93 (40%), Positives = 53/93 (56%), Gaps = 1/93 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M +S LI IA+K+ L+ K VN LLE +T+ALA G RV + GFG+F VR+R AR
Sbjct: 1 MHQSDLIKAIAEKS-GLSQAQAGKAVNALLESITEALAAGDRVVLTGFGTFEVRERQART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSP 93
P ++ + + P F AG NLK+ +
Sbjct: 60 GFNPKTREPLEIPATRAPAFSAGSNLKKAVTEK 92
>gi|167768371|ref|ZP_02440424.1| hypothetical protein CLOSS21_02928 [Clostridium sp. SS2/1]
gi|317497690|ref|ZP_07956005.1| bacterial DNA-binding protein [Lachnospiraceae bacterium
5_1_63FAA]
gi|167709895|gb|EDS20474.1| hypothetical protein CLOSS21_02928 [Clostridium sp. SS2/1]
gi|291560344|emb|CBL39144.1| Bacterial nucleoid DNA-binding protein [butyrate-producing
bacterium SSC/2]
gi|316895024|gb|EFV17191.1| bacterial DNA-binding protein [Lachnospiraceae bacterium
5_1_63FAA]
Length = 91
Score = 93.3 bits (231), Expect = 1e-17, Method: Composition-based stats.
Identities = 33/92 (35%), Positives = 55/92 (59%), Gaps = 1/92 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ L+ IAKK +L+ +D EK + + + + L G ++++ GFG+F V +RAAR
Sbjct: 1 MNKTELVAAIAKKT-ELSKKDAEKALKAFTDVVAEELKKGEKIQLVGFGTFEVSERAARE 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P + +V+ + P F+AGK LK+ +N
Sbjct: 60 GRNPRSGEVMHIAASKAPKFKAGKALKDIVNE 91
>gi|59711844|ref|YP_204620.1| integration host factor subunit alpha [Vibrio fischeri ES114]
gi|197336165|ref|YP_002156041.1| integration host factor, alpha subunit [Vibrio fischeri MJ11]
gi|75507023|sp|Q5E5G4|IHFA_VIBF1 RecName: Full=Integration host factor subunit alpha;
Short=IHF-alpha
gi|226709758|sp|B5FDX6|IHFA_VIBFM RecName: Full=Integration host factor subunit alpha;
Short=IHF-alpha
gi|59479945|gb|AAW85732.1| integration host factor (IHF), DNA-binding protein, alpha subunit
[Vibrio fischeri ES114]
gi|197317655|gb|ACH67102.1| integration host factor, alpha subunit [Vibrio fischeri MJ11]
Length = 98
Score = 93.3 bits (231), Expect = 1e-17, Method: Composition-based stats.
Identities = 29/91 (31%), Positives = 54/91 (59%), Gaps = 1/91 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ L T+ +K L+ +D ++ V + EE+ QAL +G +V++ GFG+F +R+++ R
Sbjct: 4 TKADLAETLFEK-VGLSKRDAKETVEVFFEEIKQALESGEQVKLSGFGNFDLREKSERPG 62
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P + I + + V F+ G+ LK R+ +
Sbjct: 63 RNPKTGEDIPISARRVVTFKPGQKLKARVEN 93
>gi|33602628|ref|NP_890188.1| histone-like DNA-binding protein [Bordetella bronchiseptica RB50]
gi|33577070|emb|CAE35626.1| histone-like DNA-binding protein [Bordetella bronchiseptica RB50]
Length = 93
Score = 93.3 bits (231), Expect = 1e-17, Method: Composition-based stats.
Identities = 26/91 (28%), Positives = 47/91 (51%), Gaps = 1/91 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K LI T++ + + +D E +V++L +++ L G + G G FS +RAAR
Sbjct: 4 TKKDLIATLSYET-GFSRRDTENMVDVLTSTISEQLIAGEEFTLPGVGKFSTSQRAARTG 62
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P + + + + F A K LK+++N+
Sbjct: 63 RNPQTGEPVEIAASVAVKFSASKTLKDQVNA 93
>gi|15597934|ref|NP_251428.1| integration host factor subunit alpha [Pseudomonas aeruginosa PAO1]
gi|107102269|ref|ZP_01366187.1| hypothetical protein PaerPA_01003326 [Pseudomonas aeruginosa PACS2]
gi|116050728|ref|YP_790451.1| integration host factor subunit alpha [Pseudomonas aeruginosa
UCBPP-PA14]
gi|152984628|ref|YP_001347876.1| integration host factor subunit alpha [Pseudomonas aeruginosa PA7]
gi|254235716|ref|ZP_04929039.1| integration host factor, alpha subunit [Pseudomonas aeruginosa
C3719]
gi|254241191|ref|ZP_04934513.1| integration host factor, alpha subunit [Pseudomonas aeruginosa
2192]
gi|296388799|ref|ZP_06878274.1| integration host factor subunit alpha [Pseudomonas aeruginosa PAb1]
gi|313107807|ref|ZP_07793981.1| integration host factor, alpha subunit [Pseudomonas aeruginosa
39016]
gi|2495247|sp|Q51472|IHFA_PSEAE RecName: Full=Integration host factor subunit alpha;
Short=IHF-alpha
gi|122259853|sp|Q02NN5|IHFA_PSEAB RecName: Full=Integration host factor subunit alpha;
Short=IHF-alpha
gi|166918515|sp|A6V491|IHFA_PSEA7 RecName: Full=Integration host factor subunit alpha;
Short=IHF-alpha
gi|9948816|gb|AAG06126.1|AE004702_3 integration host factor, alpha subunit [Pseudomonas aeruginosa
PAO1]
gi|535711|gb|AAA65949.1| integration host factor alpha-subunit [Pseudomonas aeruginosa]
gi|115585949|gb|ABJ11964.1| integration host factor, alpha subunit [Pseudomonas aeruginosa
UCBPP-PA14]
gi|126167647|gb|EAZ53158.1| integration host factor, alpha subunit [Pseudomonas aeruginosa
C3719]
gi|126194569|gb|EAZ58632.1| integration host factor, alpha subunit [Pseudomonas aeruginosa
2192]
gi|150959786|gb|ABR81811.1| integration host factor, alpha subunit [Pseudomonas aeruginosa PA7]
gi|310880483|gb|EFQ39077.1| integration host factor, alpha subunit [Pseudomonas aeruginosa
39016]
Length = 100
Score = 93.3 bits (231), Expect = 1e-17, Method: Composition-based stats.
Identities = 28/97 (28%), Positives = 53/97 (54%), Gaps = 1/97 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ + + ++ LN ++ +++V + EE+ QAL + +V++ GFG+F +R + R
Sbjct: 5 TKAEIAERLYEEL-GLNKREAKELVELFFEEIRQALEHNEQVKLSGFGNFDLRDKRQRPG 63
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDSTLS 98
R P + I + + V FR G+ LK R+ + T S
Sbjct: 64 RNPKTGEEIPITARRVVTFRPGQKLKARVEAYAGTKS 100
>gi|117923410|ref|YP_864027.1| integration host factor, subunit alpha [Magnetococcus sp. MC-1]
gi|117607166|gb|ABK42621.1| integration host factor, alpha subunit [Magnetococcus sp. MC-1]
Length = 96
Score = 93.3 bits (231), Expect = 1e-17, Method: Composition-based stats.
Identities = 25/95 (26%), Positives = 51/95 (53%), Gaps = 1/95 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ ++ T+ ++ L+ ++ IV + E + L NG V+I GFG+F++R++ R
Sbjct: 3 MTKADIVQTVYQRL-GLSKKESADIVESVFELIRNQLENGDPVKISGFGNFTMREKNPRQ 61
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDS 95
R P + + + + V F+A + L ++N+
Sbjct: 62 GRNPKTGEEVEISARRVVTFKASQILLNKVNNGKG 96
>gi|300691321|ref|YP_003752316.1| integration host factor (IHF), alpha subunit [Ralstonia
solanacearum PSI07]
gi|299078381|emb|CBJ51031.1| integration host factor (IHF), alpha subunit [Ralstonia
solanacearum PSI07]
Length = 135
Score = 93.3 bits (231), Expect = 1e-17, Method: Composition-based stats.
Identities = 23/89 (25%), Positives = 44/89 (49%), Gaps = 1/89 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ L + ++ LN ++ + +V + +AL G V++ GFG+F +R + R
Sbjct: 36 TKAELAEMLFEQ-VGLNKRESKDMVEAFFNVIREALEQGDSVKLSGFGNFQLRDKPQRPG 94
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P ++I + + V F A + LK +
Sbjct: 95 RNPKTGEIIPITARRVVTFHASQKLKALV 123
>gi|229035244|ref|ZP_04189179.1| DNA-binding protein HU 1 [Bacillus cereus AH1271]
gi|228728056|gb|EEL79097.1| DNA-binding protein HU 1 [Bacillus cereus AH1271]
Length = 90
Score = 93.3 bits (231), Expect = 1e-17, Method: Composition-based stats.
Identities = 33/91 (36%), Positives = 52/91 (57%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ L +A+K +L +D +L+ +T ALAN +V+I GFG+F VR+R+AR
Sbjct: 1 MNKTELTRVVAEK-AELTQKDAAAATQAVLDTITTALANEEKVQILGFGTFEVRERSART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + + + P F+AGK LK+ +
Sbjct: 60 GRNPQTGEEMQIAASKAPAFKAGKELKDAVK 90
>gi|153815229|ref|ZP_01967897.1| hypothetical protein RUMTOR_01463 [Ruminococcus torques ATCC
27756]
gi|317502314|ref|ZP_07960483.1| DNA-binding protein HU [Lachnospiraceae bacterium 8_1_57FAA]
gi|331089918|ref|ZP_08338810.1| DNA-binding protein HU [Lachnospiraceae bacterium 3_1_46FAA]
gi|145847488|gb|EDK24406.1| hypothetical protein RUMTOR_01463 [Ruminococcus torques ATCC
27756]
gi|316896270|gb|EFV18372.1| DNA-binding protein HU [Lachnospiraceae bacterium 8_1_57FAA]
gi|330403150|gb|EGG82711.1| DNA-binding protein HU [Lachnospiraceae bacterium 3_1_46FAA]
Length = 90
Score = 93.3 bits (231), Expect = 1e-17, Method: Composition-based stats.
Identities = 34/91 (37%), Positives = 55/91 (60%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI IA+ + ++ +D EK + ++ +T+ L G +V++ GFG+F V +RAAR
Sbjct: 1 MNKTELITAIAE-SADISKKDSEKALKAFVDVVTEELKKGEKVQLVGFGTFEVSERAARE 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P K + +E P F+AGK LK+ +N
Sbjct: 60 GRNPQTGKTMKIEACKAPKFKAGKALKDAIN 90
>gi|319779416|ref|YP_004130329.1| Integration host factor alpha subunit [Taylorella equigenitalis
MCE9]
gi|317109440|gb|ADU92186.1| Integration host factor alpha subunit [Taylorella equigenitalis
MCE9]
Length = 124
Score = 93.3 bits (231), Expect = 1e-17, Method: Composition-based stats.
Identities = 31/89 (34%), Positives = 51/89 (57%), Gaps = 1/89 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ L + + + LN ++ ++IV+ ++ ALANG V++ GFG+F VR +AAR
Sbjct: 34 TKAELAEMLFE-SVGLNKREAKEIVDQFFNQIRDALANGEHVKLSGFGNFQVRDKAARPG 92
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P +VI +E + V F A + LK +
Sbjct: 93 RNPKTGEVIPIEARRVVTFHASQKLKNAV 121
>gi|257454892|ref|ZP_05620143.1| integration host factor, beta subunit [Enhydrobacter aerosaccus
SK60]
gi|257447825|gb|EEV22817.1| integration host factor, beta subunit [Enhydrobacter aerosaccus
SK60]
Length = 98
Score = 93.3 bits (231), Expect = 1e-17, Method: Composition-based stats.
Identities = 31/90 (34%), Positives = 53/90 (58%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
KS LI ++ + + + +E+ +++ M L+ GRVE+RGFGSFS+ R R+A
Sbjct: 6 NKSDLITRLSSECENIPEKTIEEATKQIIDLMVDTLSQNGRVEVRGFGSFSLHHREPRVA 65
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + ++V+ +P F+ GK L+E +N
Sbjct: 66 RNPKTGEKVTVKATAIPHFKPGKALREAVN 95
>gi|328676006|gb|AEB28681.1| DNA-binding protein HU-beta [Francisella cf. novicida 3523]
Length = 90
Score = 93.3 bits (231), Expect = 1e-17, Method: Composition-based stats.
Identities = 30/91 (32%), Positives = 50/91 (54%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS L+ IAK+ + + ++ + +T+AL +G V + GFG+F V++R+ R
Sbjct: 1 MNKSELVSAIAKE-ADVTKEVASNTLDATIAAVTKALKSGDSVTLVGFGTFQVKERSPRE 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + I + VP F+AGK LK+ +
Sbjct: 60 GRNPKTGETIKIPASKVPSFKAGKGLKDAVK 90
>gi|217968881|ref|YP_002354115.1| histone family protein DNA-binding protein [Thauera sp. MZ1T]
gi|217506208|gb|ACK53219.1| histone family protein DNA-binding protein [Thauera sp. MZ1T]
Length = 91
Score = 93.3 bits (231), Expect = 1e-17, Method: Composition-based stats.
Identities = 29/92 (31%), Positives = 46/92 (50%), Gaps = 1/92 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K + +A + ++ ++ ++ +L+ + + LA G +V GFGSF V +RAAR
Sbjct: 1 MNKGEFVEALADRL-DVHRAQADRALSAVLDIIAEQLAKGEKVAFTGFGSFEVSQRAART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P I + VP F AG LK +N
Sbjct: 60 GRNPQTGATIEIAASSVPKFTAGATLKASVNK 91
>gi|296121526|ref|YP_003629304.1| histone family protein DNA-binding protein [Planctomyces
limnophilus DSM 3776]
gi|296013866|gb|ADG67105.1| histone family protein DNA-binding protein [Planctomyces
limnophilus DSM 3776]
Length = 171
Score = 93.3 bits (231), Expect = 1e-17, Method: Composition-based stats.
Identities = 31/90 (34%), Positives = 49/90 (54%), Gaps = 1/90 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K ++ I+ + L ++IV + + + L GR+E+R FG F V+KRAAR
Sbjct: 1 MTKKEIVKAISDEI-GLTQLKTKEIVQKTFDAIVETLVADGRIELRNFGVFEVKKRAARK 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
AR P + V EK V F+ GK ++E++
Sbjct: 60 ARNPRTGDKVFVPEKFVVTFKPGKEMEEKV 89
>gi|323493296|ref|ZP_08098420.1| Integration host factor, alpha subunit [Vibrio brasiliensis LMG
20546]
gi|323312459|gb|EGA65599.1| Integration host factor, alpha subunit [Vibrio brasiliensis LMG
20546]
Length = 98
Score = 93.3 bits (231), Expect = 1e-17, Method: Composition-based stats.
Identities = 27/93 (29%), Positives = 49/93 (52%), Gaps = 1/93 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ L + +K + +D ++ V EE+ +AL +G +V++ GFG+F +R + R
Sbjct: 4 TKADLAENLFEKL-GYSKRDAKETVEAFFEEIRKALESGEQVKLSGFGNFDLRDKNERPG 62
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLNSPD 94
R P + I + + V FR G+ LK R+ +
Sbjct: 63 RNPKTGEDIPISARRVVTFRPGQKLKARVENIK 95
>gi|240948534|ref|ZP_04752907.1| DNA-binding protein HU [Actinobacillus minor NM305]
gi|257464750|ref|ZP_05629121.1| DNA-binding protein HU [Actinobacillus minor 202]
gi|240297042|gb|EER47613.1| DNA-binding protein HU [Actinobacillus minor NM305]
gi|257450410|gb|EEV24453.1| DNA-binding protein HU [Actinobacillus minor 202]
Length = 90
Score = 93.3 bits (231), Expect = 1e-17, Method: Composition-based stats.
Identities = 34/91 (37%), Positives = 52/91 (57%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI IA K +L+ +D + + LE ++++L G V++ GFG+F V +RAAR
Sbjct: 1 MNKSELIDAIAAK-AELSKKDAKAALEATLEAVSESLKAGDTVQLIGFGTFKVNERAART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + I + +P F AGK LK+ +
Sbjct: 60 GRNPRTGEEIKIAAAKIPAFVAGKALKDLVK 90
>gi|53717643|ref|YP_106629.1| DNA-binding protein HU-alpha [Burkholderia pseudomallei K96243]
gi|53723975|ref|YP_104420.1| DNA-binding protein HU, form B [Burkholderia mallei ATCC 23344]
gi|67643053|ref|ZP_00441802.1| DNA-binding protein HU-beta [Burkholderia mallei GB8 horse 4]
gi|121599876|ref|YP_994676.1| DNA-binding protein HU, form B [Burkholderia mallei SAVP1]
gi|124384371|ref|YP_001027609.1| DNA-binding protein HU, form B [Burkholderia mallei NCTC 10229]
gi|126442121|ref|YP_001057059.1| DNA-binding protein HU-alpha [Burkholderia pseudomallei 668]
gi|126450406|ref|YP_001082492.1| DNA-binding protein HU-alpha [Burkholderia mallei NCTC 10247]
gi|126453925|ref|YP_001064289.1| DNA-binding protein HU-alpha [Burkholderia pseudomallei 1106a]
gi|134281504|ref|ZP_01768212.1| DNA-binding protein HU-alpha [Burkholderia pseudomallei 305]
gi|167001301|ref|ZP_02267100.1| DNA-binding protein HU-alpha [Burkholderia mallei PRL-20]
gi|167582881|ref|ZP_02375755.1| DNA-binding protein HU-alpha [Burkholderia thailandensis TXDOH]
gi|167621021|ref|ZP_02389652.1| DNA-binding protein HU-alpha [Burkholderia thailandensis Bt4]
gi|167717366|ref|ZP_02400602.1| DNA-binding protein HU-alpha [Burkholderia pseudomallei DM98]
gi|167736410|ref|ZP_02409184.1| DNA-binding protein HU-alpha [Burkholderia pseudomallei 14]
gi|167813485|ref|ZP_02445165.1| DNA-binding protein HU-alpha [Burkholderia pseudomallei 91]
gi|167822026|ref|ZP_02453497.1| DNA-binding protein HU-alpha [Burkholderia pseudomallei 9]
gi|167834839|ref|ZP_02461722.1| DNA-binding protein HU-alpha [Burkholderia thailandensis MSMB43]
gi|167843639|ref|ZP_02469147.1| DNA-binding protein HU-alpha [Burkholderia pseudomallei B7210]
gi|167892111|ref|ZP_02479513.1| DNA-binding protein HU-alpha [Burkholderia pseudomallei 7894]
gi|167900623|ref|ZP_02487828.1| DNA-binding protein HU-alpha [Burkholderia pseudomallei NCTC
13177]
gi|167908846|ref|ZP_02495937.1| DNA-binding protein HU-alpha [Burkholderia pseudomallei 112]
gi|167921116|ref|ZP_02508207.1| DNA-binding protein HU-alpha [Burkholderia pseudomallei BCC215]
gi|217424016|ref|ZP_03455516.1| DNA-binding protein HU-alpha [Burkholderia pseudomallei 576]
gi|226193072|ref|ZP_03788682.1| DNA-binding protein HU-alpha [Burkholderia pseudomallei Pakistan
9]
gi|237814395|ref|YP_002898846.1| DNA-binding protein HU-beta [Burkholderia pseudomallei MSHR346]
gi|242314515|ref|ZP_04813531.1| DNA-binding protein HU-alpha [Burkholderia pseudomallei 1106b]
gi|254174725|ref|ZP_04881386.1| DNA-binding protein HU-alpha [Burkholderia mallei ATCC 10399]
gi|254184070|ref|ZP_04890661.1| DNA-binding protein HU-alpha [Burkholderia pseudomallei 1655]
gi|254186534|ref|ZP_04893051.1| DNA-binding protein HU-alpha [Burkholderia pseudomallei Pasteur
52237]
gi|254194585|ref|ZP_04901016.1| DNA-binding protein HU-alpha [Burkholderia pseudomallei S13]
gi|254201495|ref|ZP_04907859.1| DNA-binding protein HU-alpha [Burkholderia mallei FMH]
gi|254206834|ref|ZP_04913185.1| DNA-binding protein HU-alpha [Burkholderia mallei JHU]
gi|254260815|ref|ZP_04951869.1| DNA-binding protein HU-alpha [Burkholderia pseudomallei 1710a]
gi|254298660|ref|ZP_04966111.1| DNA-binding protein HU-alpha [Burkholderia pseudomallei 406e]
gi|254357388|ref|ZP_04973662.1| DNA-binding protein HU-alpha [Burkholderia mallei 2002721280]
gi|14194657|sp|Q9ZF89|DBHA_BURPS RecName: Full=DNA-binding protein HU-alpha
gi|4139233|gb|AAD05170.1| DbhB [Burkholderia pseudomallei 1026b]
gi|52208057|emb|CAH33987.1| DNA-binding protein HU-alpha [Burkholderia pseudomallei K96243]
gi|52427398|gb|AAU47991.1| DNA-binding protein HU, form B [Burkholderia mallei ATCC 23344]
gi|121228686|gb|ABM51204.1| DNA-binding protein HU, form B [Burkholderia mallei SAVP1]
gi|124292391|gb|ABN01660.1| DNA-binding protein HU, form B [Burkholderia mallei NCTC 10229]
gi|126221614|gb|ABN85120.1| DNA-binding protein HU-alpha [Burkholderia pseudomallei 668]
gi|126227567|gb|ABN91107.1| DNA-binding protein HU-alpha [Burkholderia pseudomallei 1106a]
gi|126243276|gb|ABO06369.1| DNA-binding protein HU-alpha [Burkholderia mallei NCTC 10247]
gi|134247171|gb|EBA47257.1| DNA-binding protein HU-alpha [Burkholderia pseudomallei 305]
gi|147747389|gb|EDK54465.1| DNA-binding protein HU-alpha [Burkholderia mallei FMH]
gi|147752376|gb|EDK59442.1| DNA-binding protein HU-alpha [Burkholderia mallei JHU]
gi|148026452|gb|EDK84537.1| DNA-binding protein HU-alpha [Burkholderia mallei 2002721280]
gi|157808487|gb|EDO85657.1| DNA-binding protein HU-alpha [Burkholderia pseudomallei 406e]
gi|157934219|gb|EDO89889.1| DNA-binding protein HU-alpha [Burkholderia pseudomallei Pasteur
52237]
gi|160695770|gb|EDP85740.1| DNA-binding protein HU-alpha [Burkholderia mallei ATCC 10399]
gi|169651335|gb|EDS84028.1| DNA-binding protein HU-alpha [Burkholderia pseudomallei S13]
gi|184214602|gb|EDU11645.1| DNA-binding protein HU-alpha [Burkholderia pseudomallei 1655]
gi|217393079|gb|EEC33101.1| DNA-binding protein HU-alpha [Burkholderia pseudomallei 576]
gi|225934672|gb|EEH30649.1| DNA-binding protein HU-alpha [Burkholderia pseudomallei Pakistan
9]
gi|237505255|gb|ACQ97573.1| DNA-binding protein HU-beta [Burkholderia pseudomallei MSHR346]
gi|238524297|gb|EEP87730.1| DNA-binding protein HU-beta [Burkholderia mallei GB8 horse 4]
gi|242137754|gb|EES24156.1| DNA-binding protein HU-alpha [Burkholderia pseudomallei 1106b]
gi|243062917|gb|EES45103.1| DNA-binding protein HU-alpha [Burkholderia mallei PRL-20]
gi|254219504|gb|EET08888.1| DNA-binding protein HU-alpha [Burkholderia pseudomallei 1710a]
Length = 92
Score = 93.3 bits (231), Expect = 1e-17, Method: Composition-based stats.
Identities = 30/92 (32%), Positives = 46/92 (50%), Gaps = 1/92 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K LI +A + + + ++ LLE + +A++ G V++ GFGSF KRAAR
Sbjct: 1 MNKQELIDAVAAQT-GASKAQTGETLDTLLEVIKKAVSKGDSVQLIGFGSFGSGKRAART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P + I + F AGK K+ +N
Sbjct: 60 GRNPKTGETIKIPAAKTVKFTAGKAFKDAVNK 91
>gi|284048950|ref|YP_003399289.1| histone family protein DNA-binding protein [Acidaminococcus
fermentans DSM 20731]
gi|283953171|gb|ADB47974.1| histone family protein DNA-binding protein [Acidaminococcus
fermentans DSM 20731]
Length = 91
Score = 93.3 bits (231), Expect = 1e-17, Method: Composition-based stats.
Identities = 36/92 (39%), Positives = 53/92 (57%), Gaps = 1/92 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI +A K L +D EK VN ++ + +A+AN +V++ GFG+F R R AR
Sbjct: 1 MNKSELIAEVASKTA-LPKKDAEKAVNAFIDTVKEAVANKDKVQLIGFGTFEARVRNARS 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
+ P + I + E VP F+AGK K+ +N
Sbjct: 60 GKNPRTGETIEIAEANVPAFKAGKAFKDAVNK 91
>gi|258511174|ref|YP_003184608.1| histone family protein DNA-binding protein [Alicyclobacillus
acidocaldarius subsp. acidocaldarius DSM 446]
gi|257477900|gb|ACV58219.1| histone family protein DNA-binding protein [Alicyclobacillus
acidocaldarius subsp. acidocaldarius DSM 446]
Length = 90
Score = 93.3 bits (231), Expect = 1e-17, Method: Composition-based stats.
Identities = 28/91 (30%), Positives = 40/91 (43%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K L+ + + L V +++N E T+ L G V + G F R+AR
Sbjct: 1 MNKGELVAEVQAR-VGLPKSQVLQVLNTFCEVTTERLQAGEEVSLPPLGKFQYVMRSARR 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P ++I V EK FR LK R+N
Sbjct: 60 QRNPQTGEMIDVPEKATVRFRPSGALKGRVN 90
>gi|225573957|ref|ZP_03782602.1| hypothetical protein RUMHYD_02051 [Blautia hydrogenotrophica DSM
10507]
gi|225038795|gb|EEG49041.1| hypothetical protein RUMHYD_02051 [Blautia hydrogenotrophica DSM
10507]
Length = 102
Score = 93.3 bits (231), Expect = 1e-17, Method: Composition-based stats.
Identities = 33/93 (35%), Positives = 54/93 (58%), Gaps = 1/93 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ L+ +AK+ KL +DVE ++ ++ ++ L G +V++ GFG+F V KRAAR
Sbjct: 11 MNKTELVAAMAKET-KLAKKDVEAVLKSFIDVVSDELKKGEKVQLVGFGTFEVSKRAARE 69
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSP 93
R P + + + P F+AGK LK+ +N
Sbjct: 70 GRNPQTGETMKISASKAPKFKAGKALKDLVNEE 102
>gi|118497645|ref|YP_898695.1| DNA-binding protein HU-beta [Francisella tularensis subsp.
novicida U112]
gi|208779447|ref|ZP_03246793.1| DNA-binding protein HU-beta [Francisella novicida FTG]
gi|254373011|ref|ZP_04988500.1| hypothetical protein FTCG_00584 [Francisella tularensis subsp.
novicida GA99-3549]
gi|118423551|gb|ABK89941.1| DNA-binding protein HU-beta [Francisella novicida U112]
gi|151570738|gb|EDN36392.1| hypothetical protein FTCG_00584 [Francisella novicida GA99-3549]
gi|208745247|gb|EDZ91545.1| DNA-binding protein HU-beta [Francisella novicida FTG]
gi|332678353|gb|AEE87482.1| DNA-binding protein HU-beta [Francisella cf. novicida Fx1]
Length = 90
Score = 93.3 bits (231), Expect = 1e-17, Method: Composition-based stats.
Identities = 31/91 (34%), Positives = 50/91 (54%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS L+ IAK+ + + ++ + +T+AL NG V + GFG+F V++R+ R
Sbjct: 1 MNKSELVSAIAKE-ADVTKEVASNTLDATIAAVTKALKNGDSVTLVGFGTFQVKERSPRE 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + I + VP F+AGK LK+ +
Sbjct: 60 GRNPKTGETIKIPASKVPSFKAGKGLKDAVK 90
>gi|167750745|ref|ZP_02422872.1| hypothetical protein EUBSIR_01723 [Eubacterium siraeum DSM 15702]
gi|167656180|gb|EDS00310.1| hypothetical protein EUBSIR_01723 [Eubacterium siraeum DSM 15702]
Length = 105
Score = 93.3 bits (231), Expect = 1e-17, Method: Composition-based stats.
Identities = 33/90 (36%), Positives = 54/90 (60%), Gaps = 1/90 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ L+ +A+K L +D EK ++ L+E +++ LA G ++++ GFG+F VR+RAAR
Sbjct: 15 MTKAELVTMVAEK-ADLTKKDAEKAISALVESISETLAKGEKIQLVGFGTFEVRERAARE 73
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
P I + VP F+AG LK+ +
Sbjct: 74 GVNPRTGDKIKIAASKVPAFKAGSALKDAV 103
>gi|293374971|ref|ZP_06621266.1| DNA-binding protein HU [Turicibacter sanguinis PC909]
gi|325843341|ref|ZP_08167924.1| DNA-binding protein HU-beta [Turicibacter sp. HGF1]
gi|292646381|gb|EFF64396.1| DNA-binding protein HU [Turicibacter sanguinis PC909]
gi|325489370|gb|EGC91743.1| DNA-binding protein HU-beta [Turicibacter sp. HGF1]
Length = 90
Score = 93.3 bits (231), Expect = 1e-17, Method: Composition-based stats.
Identities = 35/91 (38%), Positives = 54/91 (59%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M +S L+ IA+K +L +D +K ++ +E +T+AL +V + GFG+F VR+RAAR
Sbjct: 1 MNRSQLVDKIAEK-AELTKKDADKFLSAYIEAVTEALQADDKVALVGFGTFEVRERAARQ 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R + I +E P F+AGK LK+ L
Sbjct: 60 GRNLHTGETIEIEASKYPAFKAGKALKDALK 90
>gi|253999167|ref|YP_003051230.1| histone family protein DNA-binding protein [Methylovorus sp.
SIP3-4]
gi|313201269|ref|YP_004039927.1| histone family protein DNA-binding protein [Methylovorus sp.
MP688]
gi|253985846|gb|ACT50703.1| histone family protein DNA-binding protein [Methylovorus sp.
SIP3-4]
gi|312440585|gb|ADQ84691.1| histone family protein DNA-binding protein [Methylovorus sp.
MP688]
Length = 90
Score = 93.3 bits (231), Expect = 1e-17, Method: Composition-based stats.
Identities = 36/91 (39%), Positives = 48/91 (52%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI IA K ++ + ++ +T+AL G V + GFGSF V KRAAR
Sbjct: 1 MNKSELIDEIA-KAAGISKAAAGRSLDATTAAVTKALKKGDIVTLIGFGSFYVGKRAARN 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P I ++ P FRAGK LK+ +N
Sbjct: 60 GRNPRTGTTIKIKAANSPKFRAGKALKDAVN 90
>gi|330806808|ref|YP_004351270.1| DNA-binding protein, alpha subunit [Pseudomonas brassicacearum
subsp. brassicacearum NFM421]
gi|327374916|gb|AEA66266.1| Putative DNA-binding protein, alpha subunit [Pseudomonas
brassicacearum subsp. brassicacearum NFM421]
Length = 91
Score = 93.3 bits (231), Expect = 1e-17, Method: Composition-based stats.
Identities = 30/91 (32%), Positives = 47/91 (51%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K L IA+K L + +++N +LEE+T AL V + GFG+F R R AR
Sbjct: 1 MRKPELAAAIAEK-ADLTKEQANRVLNAVLEEITGALHRKDSVTLVGFGTFLQRHRGART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
+ P + + ++ F+ GK LK+ +N
Sbjct: 60 GKNPQTGEPVKIKASNTVAFKPGKFLKDSVN 90
>gi|9630187|ref|NP_046614.1| histone-like prokaryotic DNA-binding protein family [Bacillus
phage SPBc2]
gi|16079164|ref|NP_389988.1| HU-related DNA-binding protein; phage SPbeta [Bacillus subtilis
subsp. subtilis str. 168]
gi|221310012|ref|ZP_03591859.1| hypothetical protein Bsubs1_11596 [Bacillus subtilis subsp.
subtilis str. 168]
gi|221314334|ref|ZP_03596139.1| hypothetical protein BsubsN3_11517 [Bacillus subtilis subsp.
subtilis str. NCIB 3610]
gi|221319256|ref|ZP_03600550.1| hypothetical protein BsubsJ_11443 [Bacillus subtilis subsp.
subtilis str. JH642]
gi|221323532|ref|ZP_03604826.1| hypothetical protein BsubsS_11572 [Bacillus subtilis subsp.
subtilis str. SMY]
gi|56405013|sp|P68573|DBH2_BACSU RecName: Full=SPBc2 prophage-derived DNA-binding protein HU 2
gi|56405014|sp|P68574|DBH2_BPSPC RecName: Full=DNA-binding protein HU 2
gi|2634525|emb|CAB14023.1| putative HU-related DNA-binding protein; phage SPbeta [Bacillus
subtilis subsp. subtilis str. 168]
gi|3025540|gb|AAC13035.1| histone-like prokaryotic DNA-binding protein family [Bacillus
phage SPbeta]
Length = 92
Score = 93.3 bits (231), Expect = 1e-17, Method: Composition-based stats.
Identities = 30/93 (32%), Positives = 52/93 (55%), Gaps = 1/93 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI +A+K ++ ++ V + + +++AL +G +V I GFG+F VR+RAAR
Sbjct: 1 MNKTELIAKVAEKQ-GVSKKEGAPSVEKVFDTISEALKSGEKVSIPGFGTFEVRERAARK 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSP 93
R P + I + P F+ K LK+ + +
Sbjct: 60 GRNPQTGEEIDIPATKAPAFKPAKALKDAVKAK 92
>gi|121998363|ref|YP_001003150.1| histone family protein DNA-binding protein [Halorhodospira
halophila SL1]
gi|121589768|gb|ABM62348.1| histone family protein DNA-binding protein [Halorhodospira
halophila SL1]
Length = 91
Score = 93.3 bits (231), Expect = 1e-17, Method: Composition-based stats.
Identities = 25/92 (27%), Positives = 44/92 (47%), Gaps = 1/92 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ L +A + ++ + V+ + + ++LA+G V I GFG F+V R R
Sbjct: 1 MNKADLAEKVAAET-GVSKRVATDAVSAVFTGIEESLASGEDVSIPGFGKFAVVARPERQ 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P ++I + M F+ G LK ++
Sbjct: 60 GRNPQTGELIDIPAGMNVRFKPGAPLKRSVDQ 91
>gi|326790215|ref|YP_004308036.1| histone family protein DNA-binding protein [Clostridium
lentocellum DSM 5427]
gi|326540979|gb|ADZ82838.1| histone family protein DNA-binding protein [Clostridium
lentocellum DSM 5427]
Length = 92
Score = 93.3 bits (231), Expect = 1e-17, Method: Composition-based stats.
Identities = 26/93 (27%), Positives = 50/93 (53%), Gaps = 1/93 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS L+ ++ K +++ +D EK + + + + L GG++++ GFG+F V +R R+
Sbjct: 1 MNKSELVAAMSAK-AEISKKDAEKALKAFEDVVMEELQAGGKIQLVGFGTFEVTERKPRV 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSP 93
R P + + + P F+ GK LK+ +
Sbjct: 60 GRNPKTNEEMPIPGGKAPKFKPGKALKDVVKGN 92
>gi|229593397|ref|YP_002875516.1| DNA-binding protein HU1 [Pseudomonas fluorescens SBW25]
gi|312963898|ref|ZP_07778369.1| histone-like DNA-binding protein [Pseudomonas fluorescens WH6]
gi|229365263|emb|CAY53586.1| DNA-binding protein HU1 [Pseudomonas fluorescens SBW25]
gi|311281933|gb|EFQ60543.1| histone-like DNA-binding protein [Pseudomonas fluorescens WH6]
Length = 91
Score = 93.3 bits (231), Expect = 1e-17, Method: Composition-based stats.
Identities = 30/92 (32%), Positives = 49/92 (53%), Gaps = 1/92 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K L IA+K L + +++N +LEE+T AL V + GFG+F R R AR
Sbjct: 1 MRKPELAAAIAEK-ADLTKEQANRVLNAVLEEITGALHRKDSVTLVGFGTFLQRHRGART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
+ P + + ++ F+ GK+LK+ +N+
Sbjct: 60 GKNPQTGEPVKIKASNTVAFKPGKSLKDTVNA 91
>gi|78064724|ref|YP_367493.1| histone-like DNA-binding protein [Burkholderia sp. 383]
gi|107021567|ref|YP_619894.1| histone-like DNA-binding protein [Burkholderia cenocepacia AU
1054]
gi|115350111|ref|YP_771950.1| histone family protein DNA-binding protein [Burkholderia
ambifaria AMMD]
gi|116688089|ref|YP_833712.1| histone family protein DNA-binding protein [Burkholderia
cenocepacia HI2424]
gi|134294197|ref|YP_001117932.1| histone family protein DNA-binding protein [Burkholderia
vietnamiensis G4]
gi|161523246|ref|YP_001578258.1| histone family protein DNA-binding protein [Burkholderia
multivorans ATCC 17616]
gi|167584991|ref|ZP_02377379.1| DNA-binding protein HU-alpha [Burkholderia ubonensis Bu]
gi|170699034|ref|ZP_02890091.1| histone family protein DNA-binding protein [Burkholderia
ambifaria IOP40-10]
gi|170731439|ref|YP_001763386.1| histone family protein DNA-binding protein [Burkholderia
cenocepacia MC0-3]
gi|171318830|ref|ZP_02907967.1| histone family protein DNA-binding protein [Burkholderia
ambifaria MEX-5]
gi|172059131|ref|YP_001806783.1| histone family protein DNA-binding protein [Burkholderia
ambifaria MC40-6]
gi|189348897|ref|YP_001944525.1| DNA-binding protein HU-beta [Burkholderia multivorans ATCC 17616]
gi|206561866|ref|YP_002232631.1| DNA-binding protein HU-alpha [Burkholderia cenocepacia J2315]
gi|221202221|ref|ZP_03575256.1| DNA-binding protein HU-alpha [Burkholderia multivorans CGD2M]
gi|221208718|ref|ZP_03581717.1| DNA-binding protein HU-alpha [Burkholderia multivorans CGD2]
gi|221214332|ref|ZP_03587304.1| DNA-binding protein HU-alpha [Burkholderia multivorans CGD1]
gi|238025719|ref|YP_002909950.1| DNA-binding protein HU-alpha [Burkholderia glumae BGR1]
gi|254246661|ref|ZP_04939982.1| DNA-binding protein HU-alpha [Burkholderia cenocepacia PC184]
gi|254251009|ref|ZP_04944327.1| hypothetical protein BDAG_00176 [Burkholderia dolosa AUO158]
gi|330815006|ref|YP_004358711.1| histone-like DNA-binding protein [Burkholderia gladioli BSR3]
gi|77965469|gb|ABB06849.1| Histone-like DNA-binding protein [Burkholderia sp. 383]
gi|105891756|gb|ABF74921.1| histone-like DNA-binding protein [Burkholderia cenocepacia AU
1054]
gi|115280099|gb|ABI85616.1| histone family protein DNA-binding protein [Burkholderia
ambifaria AMMD]
gi|116646178|gb|ABK06819.1| histone family protein DNA-binding protein [Burkholderia
cenocepacia HI2424]
gi|124871437|gb|EAY63153.1| DNA-binding protein HU-alpha [Burkholderia cenocepacia PC184]
gi|124893618|gb|EAY67498.1| hypothetical protein BDAG_00176 [Burkholderia dolosa AUO158]
gi|134137354|gb|ABO53097.1| histone family protein DNA-binding protein [Burkholderia
vietnamiensis G4]
gi|160340675|gb|ABX13761.1| histone family protein DNA-binding protein [Burkholderia
multivorans ATCC 17616]
gi|169814681|gb|ACA89264.1| histone family protein DNA-binding protein [Burkholderia
cenocepacia MC0-3]
gi|170136070|gb|EDT04341.1| histone family protein DNA-binding protein [Burkholderia
ambifaria IOP40-10]
gi|171095971|gb|EDT40904.1| histone family protein DNA-binding protein [Burkholderia
ambifaria MEX-5]
gi|171991648|gb|ACB62567.1| histone family protein DNA-binding protein [Burkholderia
ambifaria MC40-6]
gi|189332919|dbj|BAG41989.1| DNA-binding protein HU-beta [Burkholderia multivorans ATCC 17616]
gi|198037908|emb|CAR53853.1| DNA-binding protein HU-alpha [Burkholderia cenocepacia J2315]
gi|221165987|gb|EED98461.1| DNA-binding protein HU-alpha [Burkholderia multivorans CGD1]
gi|221171350|gb|EEE03798.1| DNA-binding protein HU-alpha [Burkholderia multivorans CGD2]
gi|221178015|gb|EEE10427.1| DNA-binding protein HU-alpha [Burkholderia multivorans CGD2M]
gi|237874913|gb|ACR27246.1| DNA-binding protein HU-alpha [Burkholderia glumae BGR1]
gi|325521652|gb|EGD00422.1| DNA-binding protein HU-alpha [Burkholderia sp. TJI49]
gi|327367399|gb|AEA58755.1| histone-like DNA-binding protein [Burkholderia gladioli BSR3]
Length = 92
Score = 92.9 bits (230), Expect = 1e-17, Method: Composition-based stats.
Identities = 30/92 (32%), Positives = 46/92 (50%), Gaps = 1/92 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K LI +A + + + ++ LLE + +A++ G V++ GFGSF KRAAR
Sbjct: 1 MNKQELIDAVAAQT-GASKAQTGETLDTLLEVIKKAVSKGDAVQLIGFGSFGSGKRAART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P + I + F AGK K+ +N
Sbjct: 60 GRNPKTGETIKIPAAKTVKFTAGKAFKDAVNK 91
>gi|146280834|ref|YP_001170987.1| HU family DNA-binding protein [Pseudomonas stutzeri A1501]
gi|145569039|gb|ABP78145.1| DNA-binding protein, HU family [Pseudomonas stutzeri A1501]
Length = 105
Score = 92.9 bits (230), Expect = 1e-17, Method: Composition-based stats.
Identities = 29/91 (31%), Positives = 48/91 (52%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K L IA+K L+ +++N +L+E+T AL V + GFG+F R R AR
Sbjct: 16 MRKPELAAAIAEK-ADLSKDQANRVLNAVLDEITNALNRKDSVTLVGFGTFVQRHRGART 74
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
+ P + ++++ F+ GK LK+ +N
Sbjct: 75 GKNPQTGQPVTIKASNTVAFKPGKMLKDAVN 105
>gi|114319923|ref|YP_741606.1| integration host factor subunit alpha [Alkalilimnicola ehrlichii
MLHE-1]
gi|122312214|sp|Q0AAM1|IHFA_ALHEH RecName: Full=Integration host factor subunit alpha;
Short=IHF-alpha
gi|114226317|gb|ABI56116.1| integration host factor, alpha subunit [Alkalilimnicola ehrlichii
MLHE-1]
Length = 101
Score = 92.9 bits (230), Expect = 1e-17, Method: Composition-based stats.
Identities = 28/99 (28%), Positives = 52/99 (52%), Gaps = 1/99 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ + + ++ LN ++ +++V EE+ QAL +G V++ GFG+F +R + R
Sbjct: 4 TKADMAERLFEE-VGLNKREAKELVESFFEEIRQALEDGVPVKLSGFGNFDLRDKNERPG 62
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDSTLSNS 100
R P + I + + V FR G+ LK R+ + + S
Sbjct: 63 RNPKTGEEIPISARRVVTFRPGQKLKSRVEAYAGNVKQS 101
>gi|302878720|ref|YP_003847284.1| histone family protein DNA-binding protein [Gallionella
capsiferriformans ES-2]
gi|302581509|gb|ADL55520.1| histone family protein DNA-binding protein [Gallionella
capsiferriformans ES-2]
Length = 93
Score = 92.9 bits (230), Expect = 1e-17, Method: Composition-based stats.
Identities = 28/94 (29%), Positives = 42/94 (44%), Gaps = 1/94 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M + LI +A K D + ++ +T+ L G + + GFGSF VR+RAAR
Sbjct: 1 MNRKELIDALATKT-GSTKADAARNFAAFIDVVTETLTAGDDISLVGFGSFEVRERAART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSPD 94
R P + + P F+ G LK +N
Sbjct: 60 GRNPATGAELKIAASKSPAFKPGATLKSAVNDSK 93
>gi|330505647|ref|YP_004382516.1| nucleoid protein HU subunit alpha [Pseudomonas mendocina NK-01]
gi|328919933|gb|AEB60764.1| nucleoid protein HU alpha subunit [Pseudomonas mendocina NK-01]
Length = 90
Score = 92.9 bits (230), Expect = 1e-17, Method: Composition-based stats.
Identities = 30/91 (32%), Positives = 47/91 (51%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K L IA+K L +++N +LEE+T AL V + GFG+F R R AR
Sbjct: 1 MRKPELAAAIAEKT-DLTKDQANRVLNAVLEEITGALNRKDSVTLVGFGTFVQRHRGART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
+ P + + ++ F+ GK+LK+ +N
Sbjct: 60 GKNPQTGQPVKIKASNTVAFKPGKSLKDAVN 90
>gi|238760269|ref|ZP_04621413.1| DNA-binding protein HU-alpha [Yersinia aldovae ATCC 35236]
gi|238701533|gb|EEP94106.1| DNA-binding protein HU-alpha [Yersinia aldovae ATCC 35236]
Length = 91
Score = 92.9 bits (230), Expect = 1e-17, Method: Composition-based stats.
Identities = 32/92 (34%), Positives = 46/92 (50%), Gaps = 1/92 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI IA K L+ + + L +T++L G V++ GFG+F V R R
Sbjct: 1 MNKTQLIDVIADK-ADLSKAQAKAALESTLGAITESLKEGDAVQLVGFGTFKVNHRNERT 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P K I + VP F +GK LK+ + S
Sbjct: 60 GRNPQTGKEIKIAAANVPAFVSGKALKDAVKS 91
>gi|330445805|ref|ZP_08309457.1| integration host factor, alpha subunit [Photobacterium leiognathi
subsp. mandapamensis svers.1.1.]
gi|328489996|dbj|GAA03954.1| integration host factor, alpha subunit [Photobacterium leiognathi
subsp. mandapamensis svers.1.1.]
Length = 98
Score = 92.9 bits (230), Expect = 1e-17, Method: Composition-based stats.
Identities = 29/89 (32%), Positives = 49/89 (55%), Gaps = 1/89 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ L + + N L+ +D + V + EE+ +AL NG +V++ GFG+F +R + R
Sbjct: 4 TKADLAENLFE-NVGLSKRDAKDTVEVFFEEIRKALENGEQVKLSGFGNFDLRDKNERPG 62
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P + I + + V FR G+ LK R+
Sbjct: 63 RNPKTGEDIPISARRVVTFRPGQKLKARV 91
>gi|1573405|gb|AAC22089.1| DNA-binding protein HU-alpha (hupA) [Haemophilus influenzae Rd
KW20]
Length = 136
Score = 92.9 bits (230), Expect = 1e-17, Method: Composition-based stats.
Identities = 32/91 (35%), Positives = 48/91 (52%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI IA +LN + + + L+ +T +L G V++ GFG+F V +RAAR
Sbjct: 47 MNKTDLIDAIANA-AELNKKQAKAALEATLDAITASLKEGEPVQLIGFGTFKVNERAART 105
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P I + VP F +GK LK+ +
Sbjct: 106 GRNPQTGAEIQIAASKVPAFVSGKALKDAIK 136
>gi|308049413|ref|YP_003912979.1| integration host factor, alpha subunit [Ferrimonas balearica DSM
9799]
gi|307631603|gb|ADN75905.1| integration host factor, alpha subunit [Ferrimonas balearica DSM
9799]
Length = 101
Score = 92.9 bits (230), Expect = 1e-17, Method: Composition-based stats.
Identities = 27/93 (29%), Positives = 47/93 (50%), Gaps = 1/93 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ + + + L+ +D + +V EE+ AL G +V++ GFG+F +R + R
Sbjct: 4 TKADMAEHLIE-TLGLHKRDAKDVVEAFFEEIRLALETGEQVKLSGFGNFELRDKNERPG 62
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLNSPD 94
R P + I + + V FR G+ LK R+ D
Sbjct: 63 RNPKTGEDIPITARRVVTFRPGQKLKTRIEESD 95
>gi|282899711|ref|ZP_06307675.1| Histone-like protein DNA-binding protein [Cylindrospermopsis
raciborskii CS-505]
gi|281195590|gb|EFA70523.1| Histone-like protein DNA-binding protein [Cylindrospermopsis
raciborskii CS-505]
Length = 94
Score = 92.9 bits (230), Expect = 1e-17, Method: Composition-based stats.
Identities = 27/90 (30%), Positives = 50/90 (55%), Gaps = 1/90 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K L+ +A+K + + + +++ ++ + +A+A+G +V + GFGSF R R AR
Sbjct: 1 MNKGELVDAVAEK-ANVTKKQADAVLSAAIDTIVEAVASGDKVTLVGFGSFESRDRKARE 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P + + + VP F AGK +E++
Sbjct: 60 GRNPKTNEKMEIPATRVPAFSAGKLFREKV 89
>gi|254188588|ref|ZP_04895099.1| integration host factor alpha subunit [Burkholderia pseudomallei
Pasteur 52237]
gi|157936267|gb|EDO91937.1| integration host factor alpha subunit [Burkholderia pseudomallei
Pasteur 52237]
Length = 134
Score = 92.9 bits (230), Expect = 1e-17, Method: Composition-based stats.
Identities = 27/98 (27%), Positives = 47/98 (47%), Gaps = 2/98 (2%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ L + + LN ++ + +V E + AL NG V++ GFG+F +R + R
Sbjct: 37 TKAELAELLFD-SVGLNKREAKDMVEAFFEVIRDALENGESVKLSGFGNFQLRDKPQRPG 95
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERL-NSPDSTLS 98
R P + I + + V F A + LK + N + L+
Sbjct: 96 RNPKTGEAIPIAARRVVTFHASQKLKALVENGAEPNLA 133
>gi|255994801|ref|ZP_05427936.1| DNA-binding protein HU [Eubacterium saphenum ATCC 49989]
gi|255993514|gb|EEU03603.1| DNA-binding protein HU [Eubacterium saphenum ATCC 49989]
Length = 92
Score = 92.9 bits (230), Expect = 1e-17, Method: Composition-based stats.
Identities = 33/93 (35%), Positives = 49/93 (52%), Gaps = 2/93 (2%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ L+ IA+K +D E +N + + +AL G +V++ GFG+F R R AR
Sbjct: 1 MNKADLVAVIAEKT-GFTKKDAEATINAFVSTVEEALIKGEKVQLIGFGTFEARDRKARK 59
Query: 61 ARAPLA-QKVISVEEKMVPFFRAGKNLKERLNS 92
R P +VI + P F+AGK LK +N
Sbjct: 60 GRNPRNPGEVIKIPASKAPVFKAGKALKAAVNK 92
>gi|220907896|ref|YP_002483207.1| histone family protein DNA-binding protein [Cyanothece sp. PCC
7425]
gi|219864507|gb|ACL44846.1| histone family protein DNA-binding protein [Cyanothece sp. PCC
7425]
Length = 95
Score = 92.9 bits (230), Expect = 1e-17, Method: Composition-based stats.
Identities = 29/90 (32%), Positives = 50/90 (55%), Gaps = 1/90 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K L+ +A+K + +D + ++ LE + + +++G +V + GFGSF R+R AR
Sbjct: 1 MNKGELVDAVAQK-ANVKKKDADAVLTAALETIMETVSSGDKVTLVGFGSFEPRERQARE 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P + + + VP F AGK KE++
Sbjct: 60 GRNPKTNEKMVIPATRVPAFSAGKLFKEKV 89
>gi|121997236|ref|YP_001002023.1| integration host factor subunit alpha [Halorhodospira halophila
SL1]
gi|166918508|sp|A1WU59|IHFA_HALHL RecName: Full=Integration host factor subunit alpha;
Short=IHF-alpha
gi|121588641|gb|ABM61221.1| integration host factor, alpha subunit [Halorhodospira halophila
SL1]
Length = 101
Score = 92.9 bits (230), Expect = 1e-17, Method: Composition-based stats.
Identities = 28/98 (28%), Positives = 50/98 (51%), Gaps = 1/98 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ + + ++ LN ++ +++V + EE+ AL NG V++ FG+F +R + R
Sbjct: 4 TKADMAERLFEE-VGLNKREAKELVELFFEEIRTALENGEPVKLSSFGNFELRDKNERPG 62
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDSTLSN 99
R P + I + + V FR G+ LK R+ S T
Sbjct: 63 RNPKTGEEIPISARRVVTFRPGQKLKSRVESYAGTREE 100
>gi|71278524|ref|YP_269693.1| integration host factor subunit alpha [Colwellia psychrerythraea
34H]
gi|123747380|sp|Q47ZS6|IHFA_COLP3 RecName: Full=Integration host factor subunit alpha;
Short=IHF-alpha
gi|71144264|gb|AAZ24737.1| integration host factor, alpha subunit [Colwellia psychrerythraea
34H]
Length = 97
Score = 92.9 bits (230), Expect = 1e-17, Method: Composition-based stats.
Identities = 27/94 (28%), Positives = 52/94 (55%), Gaps = 1/94 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ + + +K L+ +D + +V + EE+ + L +G +V++ GFG+F +R ++ R
Sbjct: 4 TKAEVAEHLFEK-VGLSKRDAKDMVEIFFEEIRETLESGDQVKLSGFGNFDLRLKSERPG 62
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDS 95
R P + I + + V FR G+ LK R+ +S
Sbjct: 63 RNPKTGEDIPISARKVVTFRPGQKLKSRVEDGNS 96
>gi|288940721|ref|YP_003442961.1| integration host factor subunit alpha [Allochromatium vinosum DSM
180]
gi|288896093|gb|ADC61929.1| integration host factor, alpha subunit [Allochromatium vinosum
DSM 180]
Length = 99
Score = 92.9 bits (230), Expect = 1e-17, Method: Composition-based stats.
Identities = 29/95 (30%), Positives = 51/95 (53%), Gaps = 1/95 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ + + ++ LN ++ + IV M EE+ AL G +V++ GFG+F +R++ R
Sbjct: 4 TKADMAEHLFEEL-GLNKREAKDIVEMFFEEIRAALERGEQVKLSGFGNFDLREKKERPG 62
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDST 96
R P + I + + V FR G+ LK R+ + T
Sbjct: 63 RNPKTGEEIPITARRVVTFRPGQKLKSRVEAYAGT 97
>gi|225027811|ref|ZP_03717003.1| hypothetical protein EUBHAL_02071 [Eubacterium hallii DSM 3353]
gi|224954861|gb|EEG36070.1| hypothetical protein EUBHAL_02071 [Eubacterium hallii DSM 3353]
Length = 91
Score = 92.9 bits (230), Expect = 1e-17, Method: Composition-based stats.
Identities = 28/92 (30%), Positives = 55/92 (59%), Gaps = 1/92 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ L+ IA++ +L +D ++ + ++ + L+ G ++++ GFG+F V +RAAR
Sbjct: 1 MNKTELVAAIAERT-ELTKKDADQALKAFIDVVGDELSKGEKIQLAGFGTFEVTERAARD 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
P ++ I + P F+A K+LKE++N+
Sbjct: 60 GINPRTKETIHIPASKAPKFKAMKSLKEKVNN 91
>gi|186477811|ref|YP_001859281.1| histone family protein DNA-binding protein [Burkholderia phymatum
STM815]
gi|184194270|gb|ACC72235.1| histone family protein DNA-binding protein [Burkholderia phymatum
STM815]
Length = 92
Score = 92.9 bits (230), Expect = 1e-17, Method: Composition-based stats.
Identities = 31/92 (33%), Positives = 46/92 (50%), Gaps = 1/92 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K LI +A + + + ++ LLE + +A+A G V++ GFGSF KRAAR
Sbjct: 1 MNKQELIDAVAGQT-GASKAQTGETLDTLLEVIKKAVAKGDAVQLIGFGSFGSGKRAART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P + I + F AGK K+ +N
Sbjct: 60 GRNPKTGETIKIPAAKTVKFTAGKAFKDAVNK 91
>gi|94266544|ref|ZP_01290230.1| Histone-like bacterial DNA-binding protein [delta proteobacterium
MLMS-1]
gi|93452819|gb|EAT03345.1| Histone-like bacterial DNA-binding protein [delta proteobacterium
MLMS-1]
Length = 93
Score = 92.9 bits (230), Expect = 1e-17, Method: Composition-based stats.
Identities = 35/88 (39%), Positives = 56/88 (63%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M+K LI +A++ P +D+++ V+++LE + +AL + RVEIRGFGSFSVR+R AR
Sbjct: 1 MLKRDLINAVAEEMPGFLKKDLDQAVDIMLESILEALEDNRRVEIRGFGSFSVRERKART 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKE 88
+ P KV+ + + F K+LK+
Sbjct: 61 TKNPRTGKVMHIPPRKNVHFTMSKSLKD 88
>gi|171778666|ref|ZP_02919762.1| hypothetical protein STRINF_00614 [Streptococcus infantarius
subsp. infantarius ATCC BAA-102]
gi|306833010|ref|ZP_07466142.1| DNA-binding protein HU [Streptococcus bovis ATCC 700338]
gi|320546358|ref|ZP_08040675.1| DNA-binding protein HU [Streptococcus equinus ATCC 9812]
gi|171282623|gb|EDT48047.1| hypothetical protein STRINF_00614 [Streptococcus infantarius
subsp. infantarius ATCC BAA-102]
gi|304424909|gb|EFM28043.1| DNA-binding protein HU [Streptococcus bovis ATCC 700338]
gi|320449012|gb|EFW89738.1| DNA-binding protein HU [Streptococcus equinus ATCC 9812]
Length = 91
Score = 92.9 bits (230), Expect = 1e-17, Method: Composition-based stats.
Identities = 31/90 (34%), Positives = 49/90 (54%), Gaps = 1/90 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K LI +A+ +L +D V+ + + L+ G +V++ GFG+F VR+RAAR
Sbjct: 3 NKQDLIAKVAEAT-ELTKKDSAVAVDAVFSAIESFLSEGEKVQLIGFGNFEVRERAARKG 61
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + I + VP F+AGK LK+ +
Sbjct: 62 RNPQTGEEIEIAASKVPAFKAGKALKDAVK 91
>gi|319789111|ref|YP_004150744.1| histone family protein DNA-binding protein [Thermovibrio
ammonificans HB-1]
gi|317113613|gb|ADU96103.1| histone family protein DNA-binding protein [Thermovibrio
ammonificans HB-1]
Length = 99
Score = 92.9 bits (230), Expect = 1e-17, Method: Composition-based stats.
Identities = 38/89 (42%), Positives = 58/89 (65%), Gaps = 1/89 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS L+ IA+K + +D E +N + +T+AL G +VEIRGFG+F +++RA R+
Sbjct: 1 MTKSELVAAIAEK-AGIRKKDAEAALNAFIAVVTEALKKGEKVEIRGFGTFLMKERAQRV 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKER 89
AR P + ++V K+VP F+ GK+LKE
Sbjct: 60 ARNPKTGEKVTVPPKLVPAFKPGKDLKEA 88
>gi|192361986|ref|YP_001982984.1| integration host factor subunit alpha [Cellvibrio japonicus
Ueda107]
gi|190688151|gb|ACE85829.1| integration host factor, alpha subunit [Cellvibrio japonicus
Ueda107]
Length = 102
Score = 92.9 bits (230), Expect = 1e-17, Method: Composition-based stats.
Identities = 30/97 (30%), Positives = 52/97 (53%), Gaps = 1/97 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ L + + LN ++ +++V + EE+ QAL N V++ GFG+F +R ++ R
Sbjct: 7 TKADLAEKLYEDL-GLNKREAKELVELFFEEIRQALENNEEVKLSGFGNFELRDKSQRPG 65
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDSTLS 98
R P + I + + V FR G+ LK R+ + T S
Sbjct: 66 RNPKTGEEIPISARRVVTFRPGQKLKARVEAYVGTKS 102
>gi|91784422|ref|YP_559628.1| integration host factor subunit alpha [Burkholderia xenovorans
LB400]
gi|296163121|ref|ZP_06845892.1| integration host factor, alpha subunit [Burkholderia sp. Ch1-1]
gi|91688376|gb|ABE31576.1| Integration host factor, alpha subunit [Burkholderia xenovorans
LB400]
gi|295886623|gb|EFG66470.1| integration host factor, alpha subunit [Burkholderia sp. Ch1-1]
Length = 136
Score = 92.9 bits (230), Expect = 1e-17, Method: Composition-based stats.
Identities = 25/91 (27%), Positives = 44/91 (48%), Gaps = 1/91 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ L + N LN ++ + +V E + AL +G V++ GFG+F +R + R
Sbjct: 39 TKAELAELLFD-NVGLNKREAKDMVEAFFEVIRDALESGDSVKLSGFGNFQLRDKPQRPG 97
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P + I + + V F A + LK + +
Sbjct: 98 RNPKTGEAIPIAARRVVTFHASQKLKALVEN 128
>gi|329889322|ref|ZP_08267665.1| DNA-binding protein HU 1 [Brevundimonas diminuta ATCC 11568]
gi|328844623|gb|EGF94187.1| DNA-binding protein HU 1 [Brevundimonas diminuta ATCC 11568]
Length = 91
Score = 92.9 bits (230), Expect = 1e-17, Method: Composition-based stats.
Identities = 28/91 (30%), Positives = 44/91 (48%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LIG +A+ ++ + + +++T +L G V + GFGSF R A +
Sbjct: 1 MTKTELIGRMAEA-AGISRDQAKLALEAFTDQVTGSLVQGRDVRLVGFGSFVAVDRKAGV 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
AR P + I+ FR G+ LK LN
Sbjct: 60 ARNPQTGEEIARPASRTARFRPGEGLKSALN 90
>gi|68249030|ref|YP_248142.1| DNA-binding protein HU [Haemophilus influenzae 86-028NP]
gi|68057229|gb|AAX87482.1| DNA-binding protein HU [Haemophilus influenzae 86-028NP]
Length = 136
Score = 92.9 bits (230), Expect = 1e-17, Method: Composition-based stats.
Identities = 32/91 (35%), Positives = 48/91 (52%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI IA +LN + + + L+ +T +L G V++ GFG+F V +RAAR
Sbjct: 47 MNKTDLIDAIANA-AELNKKQAKAALEATLDAITASLKEGEPVQLIGFGTFKVNERAART 105
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P I + VP F +GK LK+ +
Sbjct: 106 GRNPQTGAEIQIAASKVPAFVSGKALKDAIK 136
>gi|59801031|ref|YP_207743.1| IhfB [Neisseria gonorrhoeae FA 1090]
gi|239999161|ref|ZP_04719085.1| integration host factor subunit beta [Neisseria gonorrhoeae
35/02]
gi|240013931|ref|ZP_04720844.1| integration host factor subunit beta [Neisseria gonorrhoeae
DGI18]
gi|240016373|ref|ZP_04722913.1| integration host factor subunit beta [Neisseria gonorrhoeae
FA6140]
gi|240080492|ref|ZP_04725035.1| integration host factor subunit beta [Neisseria gonorrhoeae FA19]
gi|240113140|ref|ZP_04727630.1| integration host factor subunit beta [Neisseria gonorrhoeae MS11]
gi|240118194|ref|ZP_04732256.1| integration host factor subunit beta [Neisseria gonorrhoeae PID1]
gi|240121500|ref|ZP_04734462.1| integration host factor subunit beta [Neisseria gonorrhoeae
PID24-1]
gi|240123742|ref|ZP_04736698.1| integration host factor subunit beta [Neisseria gonorrhoeae
PID332]
gi|240125933|ref|ZP_04738819.1| integration host factor subunit beta [Neisseria gonorrhoeae
SK-92-679]
gi|254493934|ref|ZP_05107105.1| integration host factor beta-subunit [Neisseria gonorrhoeae 1291]
gi|268599221|ref|ZP_06133388.1| integration host factor beta-subunit [Neisseria gonorrhoeae MS11]
gi|297250508|ref|ZP_06864452.2| integration host factor subunit beta [Neisseria polysaccharea
ATCC 43768]
gi|59717926|gb|AAW89331.1| integration host factor beta subunit [Neisseria gonorrhoeae FA
1090]
gi|226512974|gb|EEH62319.1| integration host factor beta-subunit [Neisseria gonorrhoeae 1291]
gi|268583352|gb|EEZ48028.1| integration host factor beta-subunit [Neisseria gonorrhoeae MS11]
gi|296838821|gb|EFH22759.1| integration host factor subunit beta [Neisseria polysaccharea
ATCC 43768]
gi|316984100|gb|EFV63078.1| integration host factor subunit beta [Neisseria meningitidis
H44/76]
gi|317164448|gb|ADV07989.1| integration host factor subunit beta [Neisseria gonorrhoeae
TCDC-NG08107]
Length = 98
Score = 92.9 bits (230), Expect = 1e-17, Method: Composition-based stats.
Identities = 41/92 (44%), Positives = 58/92 (63%), Gaps = 3/92 (3%)
Query: 1 MIKSSLIGTIAKKNP-KLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAAR 59
M++ L A KN L +DVE V +L++ MT++LA G R+EIRGFGSF + R AR
Sbjct: 1 MVR--LAEVFAAKNGTHLLAKDVEYSVKVLVDTMTRSLARGQRIEIRGFGSFDLNHRPAR 58
Query: 60 LARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
+ R P + + V EK VP F+ GK L+ER++
Sbjct: 59 IGRNPKTGERVEVPEKHVPHFKPGKELRERVD 90
>gi|228918447|ref|ZP_04081894.1| DNA-binding protein HU [Bacillus thuringiensis serovar pulsiensis
BGSC 4CC1]
gi|228841197|gb|EEM86392.1| DNA-binding protein HU [Bacillus thuringiensis serovar pulsiensis
BGSC 4CC1]
Length = 93
Score = 92.9 bits (230), Expect = 1e-17, Method: Composition-based stats.
Identities = 36/91 (39%), Positives = 53/91 (58%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ L IA+K +L +D LL+ +T ALANG +V+I GFG+F VR+++AR
Sbjct: 4 MNKTELTKVIAEK-AELTQKDAAAATQALLDTITNALANGEKVQILGFGTFEVREKSART 62
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + + + P F+AGK LKE +
Sbjct: 63 GRNPQTGEEMQIAASKAPAFKAGKELKEAVK 93
>gi|170698163|ref|ZP_02889242.1| histone family protein DNA-binding protein [Burkholderia
ambifaria IOP40-10]
gi|170136928|gb|EDT05177.1| histone family protein DNA-binding protein [Burkholderia
ambifaria IOP40-10]
Length = 91
Score = 92.9 bits (230), Expect = 1e-17, Method: Composition-based stats.
Identities = 32/92 (34%), Positives = 47/92 (51%), Gaps = 1/92 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI ++ E ++ +L+ +TQALA G V+I GFGSFS RA R
Sbjct: 1 MNKNELIDAVSA-TTGAGKAHTETAIDAILQTVTQALARGEAVQIVGFGSFSTGARAERT 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P + I++ F AGK K+ +N+
Sbjct: 60 GRNPATGEAITIAAAKTVKFAAGKAFKDAVNA 91
>gi|78221576|ref|YP_383323.1| histone-like DNA-binding protein [Geobacter metallireducens
GS-15]
gi|78192831|gb|ABB30598.1| Histone-like DNA-binding protein [Geobacter metallireducens
GS-15]
Length = 94
Score = 92.9 bits (230), Expect = 1e-17, Method: Composition-based stats.
Identities = 33/95 (34%), Positives = 48/95 (50%), Gaps = 1/95 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ L+ +A K+ L +K V ++ ++ AL G +V + GFGSF V R AR
Sbjct: 1 MTKAELVDAVA-KSANLTKAAADKAVGAVISAVSDALKKGDKVTLVGFGSFEVSTRKART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDS 95
R P K I + VP FR GK LK+ + +
Sbjct: 60 GRNPQTGKEIKIAAAKVPKFRPGKALKDAVAAKKK 94
>gi|72161032|ref|YP_288689.1| histone-like DNA-binding protein [Thermobifida fusca YX]
gi|71914764|gb|AAZ54666.1| Histone-like bacterial DNA-binding protein [Thermobifida fusca
YX]
Length = 93
Score = 92.9 bits (230), Expect = 1e-17, Method: Composition-based stats.
Identities = 34/95 (35%), Positives = 46/95 (48%), Gaps = 2/95 (2%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K LI I+ + + + VN +LE + Q +A G +V I GFG F +RAAR
Sbjct: 1 MNKRDLIDAISGRLGD--KKTATEAVNAVLETIQQTVAKGDKVAITGFGVFEKAQRAART 58
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDS 95
AR P I V VP FR G + K +N+
Sbjct: 59 ARNPSTGATIHVPASYVPKFRPGADFKALVNNGKK 93
>gi|260062638|ref|YP_003195718.1| DNA-binding protein HU [Robiginitalea biformata HTCC2501]
gi|88784205|gb|EAR15375.1| DNA-binding protein HU [Robiginitalea biformata HTCC2501]
Length = 90
Score = 92.9 bits (230), Expect = 1e-17, Method: Composition-based stats.
Identities = 31/91 (34%), Positives = 46/91 (50%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI +A + + +K + L + +L G RV + GFGS+SV +R AR
Sbjct: 1 MNKTELIDAMAA-DAGITKAAAKKALESFLGNVESSLKKGNRVSLVGFGSWSVSRRNARE 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P K I + K V F+AG L + +N
Sbjct: 60 GRNPSTGKTIHIPAKNVVKFKAGSELGDAVN 90
>gi|108805105|ref|YP_645042.1| nucleoid protein Hbs [Rubrobacter xylanophilus DSM 9941]
gi|108766348|gb|ABG05230.1| bacterial nucleoid protein Hbs [Rubrobacter xylanophilus DSM
9941]
Length = 90
Score = 92.9 bits (230), Expect = 1e-17, Method: Composition-based stats.
Identities = 31/90 (34%), Positives = 48/90 (53%), Gaps = 1/90 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI IA+K + + ++ + E + +L G V+I GFG F V++R AR
Sbjct: 1 MNKSELIQEIAEKTNG-SKSEAQRFFDAFAEVVRDSLKKGEPVQITGFGKFYVQEREARE 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
P ++ I++ VP F AG +LKE +
Sbjct: 60 GINPQTKQKITIPPSKVPKFTAGNSLKEAI 89
>gi|229074054|ref|ZP_04207110.1| DNA-binding protein HU [Bacillus cereus F65185]
gi|229194173|ref|ZP_04321032.1| DNA-binding protein HU [Bacillus cereus ATCC 10876]
gi|228589314|gb|EEK47274.1| DNA-binding protein HU [Bacillus cereus ATCC 10876]
gi|228709071|gb|EEL61189.1| DNA-binding protein HU [Bacillus cereus F65185]
Length = 93
Score = 92.9 bits (230), Expect = 1e-17, Method: Composition-based stats.
Identities = 34/91 (37%), Positives = 51/91 (56%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ L +A+K +L +D LL+ +T ALA G +V+I GFG+F VR+R+AR
Sbjct: 4 MNKTELTKVVAEK-AELTQKDAAAATQALLDTITNALATGEKVQILGFGTFEVRERSART 62
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + + + P F+AGK KE +
Sbjct: 63 GRNPQTGEEMQIAASKAPAFKAGKEFKEAVK 93
>gi|146309415|ref|YP_001189880.1| nucleoid protein HU alpha subunit [Pseudomonas mendocina ymp]
gi|145577616|gb|ABP87148.1| bacterial nucleoid protein HU alpha subunit [Pseudomonas
mendocina ymp]
Length = 90
Score = 92.9 bits (230), Expect = 1e-17, Method: Composition-based stats.
Identities = 30/91 (32%), Positives = 47/91 (51%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K L IA+K L +++N +LEE+T AL V + GFG+F R R AR
Sbjct: 1 MRKPELAAAIAEK-ADLTKDQANRVLNAVLEEITGALNRKDSVTLVGFGTFVQRHRGART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
+ P + + ++ F+ GK+LK+ +N
Sbjct: 60 GKNPQTGQPVKIKASNTVAFKPGKSLKDAVN 90
>gi|329902901|ref|ZP_08273299.1| DNA-binding protein HU [Oxalobacteraceae bacterium IMCC9480]
gi|327548565|gb|EGF33226.1| DNA-binding protein HU [Oxalobacteraceae bacterium IMCC9480]
Length = 91
Score = 92.9 bits (230), Expect = 1e-17, Method: Composition-based stats.
Identities = 29/92 (31%), Positives = 45/92 (48%), Gaps = 1/92 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI IA + L ++ + +L + QA+ NG V++ GFG+F+ RA R
Sbjct: 1 MNKTELIDAIAA-DCDLPKTVAQRALESILSNVIQAVVNGDSVQLIGFGAFASGSRAERT 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P + I + F AGK K+ +N
Sbjct: 60 GRNPRTGEEIKIAAAKTVKFSAGKAFKDAVNK 91
>gi|90417317|ref|ZP_01225243.1| integration host factor, alpha subunit [marine gamma
proteobacterium HTCC2207]
gi|90330902|gb|EAS46165.1| integration host factor, alpha subunit [marine gamma
proteobacterium HTCC2207]
Length = 99
Score = 92.9 bits (230), Expect = 1e-17, Method: Composition-based stats.
Identities = 28/95 (29%), Positives = 51/95 (53%), Gaps = 1/95 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ L + ++ LN ++ ++IV M E++ AL N V++ GFG+F +R + +R
Sbjct: 5 TKADLAEMLFEEL-GLNKREAKEIVEMFYSEISLALENNDSVKLSGFGNFELRDKKSRPG 63
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDST 96
R P + I + + V F+ G+ LK R+ + T
Sbjct: 64 RNPKTGEEIPISARRVVTFKPGQKLKARVENYAGT 98
>gi|158523217|ref|YP_001531087.1| histone family protein DNA-binding protein [Desulfococcus
oleovorans Hxd3]
gi|158512043|gb|ABW69010.1| histone family protein DNA-binding protein [Desulfococcus
oleovorans Hxd3]
Length = 91
Score = 92.9 bits (230), Expect = 1e-17, Method: Composition-based stats.
Identities = 32/91 (35%), Positives = 49/91 (53%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K L+ + K ++ + KIV + M LA G RVE+RG SF V++ +
Sbjct: 1 MNKLELVTALKDKT-GVSKVEAAKIVKTFFDTMADTLATGERVEVRGLCSFFVKEYKSYT 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + +++ K +PFF+ GK LKER+N
Sbjct: 60 GRNPKTGEKVTIAPKKLPFFKCGKELKERIN 90
>gi|190015068|ref|YP_001966692.1| DNA-binding protein HU [Bacillus cereus]
gi|190015334|ref|YP_001967017.1| DNA-binding protein HU [Bacillus cereus]
gi|218848460|ref|YP_002455066.1| DNA-binding protein HU 1 [Bacillus cereus AH820]
gi|228943061|ref|ZP_04105556.1| DNA-binding protein HU 1 [Bacillus thuringiensis serovar berliner
ATCC 10792]
gi|228975886|ref|ZP_04136415.1| DNA-binding protein HU 1 [Bacillus thuringiensis serovar
thuringiensis str. T01001]
gi|71025122|gb|AAZ17499.1| HbsU-like protein [Bacillus thuringiensis]
gi|116584744|gb|ABK00859.1| DNA-binding protein HU [Bacillus cereus]
gi|116585015|gb|ABK01124.1| DNA-binding protein HU [Bacillus cereus]
gi|218540511|gb|ACK92907.1| DNA-binding protein HU 1 [Bacillus cereus AH820]
gi|228783849|gb|EEM31899.1| DNA-binding protein HU 1 [Bacillus thuringiensis serovar
thuringiensis str. T01001]
gi|228816590|gb|EEM62720.1| DNA-binding protein HU 1 [Bacillus thuringiensis serovar berliner
ATCC 10792]
gi|326943313|gb|AEA19208.1| DNA-binding protein HU [Bacillus thuringiensis serovar chinensis
CT-43]
Length = 90
Score = 92.9 bits (230), Expect = 1e-17, Method: Composition-based stats.
Identities = 33/91 (36%), Positives = 52/91 (57%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ L +A+K +L +D +L+ +T ALAN +V+I GFG+F VR+R+AR
Sbjct: 1 MNKTELTKVVAEK-AELTQKDAAAATQAVLDTITTALANEEKVQILGFGTFEVRERSART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + + + P F+AGK LK+ +
Sbjct: 60 GRNPQTGEEMQIAASKAPAFKAGKELKDAVK 90
>gi|167560912|ref|ZP_02353828.1| DNA-binding protein HU-alpha [Burkholderia oklahomensis EO147]
gi|167571802|ref|ZP_02364676.1| DNA-binding protein HU-alpha [Burkholderia oklahomensis C6786]
Length = 92
Score = 92.9 bits (230), Expect = 1e-17, Method: Composition-based stats.
Identities = 29/92 (31%), Positives = 46/92 (50%), Gaps = 1/92 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K LI +A + + + ++ LLE + ++++ G V++ GFGSF KRAAR
Sbjct: 1 MNKQELIDAVAAQT-GASKAQTGETLDTLLEVIKKSVSKGDSVQLIGFGSFGSGKRAART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P + I + F AGK K+ +N
Sbjct: 60 GRNPKTGETIKIPAAKTVKFTAGKAFKDAVNK 91
>gi|56750450|ref|YP_171151.1| DNA-binding protein HU [Synechococcus elongatus PCC 6301]
gi|81299917|ref|YP_400125.1| nucleoid protein Hbs [Synechococcus elongatus PCC 7942]
gi|56685409|dbj|BAD78631.1| DNA binding protein HU [Synechococcus elongatus PCC 6301]
gi|81168798|gb|ABB57138.1| bacterial nucleoid protein Hbs [Synechococcus elongatus PCC 7942]
Length = 91
Score = 92.9 bits (230), Expect = 1e-17, Method: Composition-based stats.
Identities = 30/90 (33%), Positives = 48/90 (53%), Gaps = 1/90 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K LI +A + + + E I++ L+ + +A++ G +V + GFGSF R R AR
Sbjct: 1 MNKGDLIDKVADR-AHVTKKQAEHIISAALDTIIEAVSGGDKVTLVGFGSFEPRDRKARE 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P + + + VP F AGK KE++
Sbjct: 60 GRNPKTGQKMKIPATKVPAFSAGKLFKEKV 89
>gi|297570483|ref|YP_003691827.1| histone family protein DNA-binding protein [Desulfurivibrio
alkaliphilus AHT2]
gi|296926398|gb|ADH87208.1| histone family protein DNA-binding protein [Desulfurivibrio
alkaliphilus AHT2]
Length = 91
Score = 92.5 bits (229), Expect = 1e-17, Method: Composition-based stats.
Identities = 38/91 (41%), Positives = 55/91 (60%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI +A +N +L ++ + +LE MT A+A G +EIRGFGSF V++ +
Sbjct: 1 MNKSELIEALA-RNTELPIREAGAVTGTILEAMTAAMARGENIEIRGFGSFVVKEYESYY 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + I V K +PFF+ GK L+E+LN
Sbjct: 60 GRNPKTGEKIKVPPKRLPFFKVGKELREKLN 90
>gi|160878293|ref|YP_001557261.1| histone family protein DNA-binding protein [Clostridium
phytofermentans ISDg]
gi|160426959|gb|ABX40522.1| histone family protein DNA-binding protein [Clostridium
phytofermentans ISDg]
Length = 91
Score = 92.5 bits (229), Expect = 1e-17, Method: Composition-based stats.
Identities = 33/92 (35%), Positives = 55/92 (59%), Gaps = 1/92 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ L+ IA+K +L+ +D EK + ++ +T+ L G +V++ GFG+F V R AR
Sbjct: 1 MNKAELVAAIAEKT-ELSKKDSEKALKAFIDVVTEELTKGEKVQLVGFGTFEVSARPART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P ++ I++ P F+AGK LK+ +N
Sbjct: 60 GRNPQTKQTITIAASKAPKFKAGKALKDVINK 91
>gi|49075042|gb|AAT49447.1| PA2738 [synthetic construct]
Length = 101
Score = 92.5 bits (229), Expect = 1e-17, Method: Composition-based stats.
Identities = 28/97 (28%), Positives = 53/97 (54%), Gaps = 1/97 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ + + ++ LN ++ +++V + EE+ QAL + +V++ GFG+F +R + R
Sbjct: 5 TKAEIAKRLYEEL-GLNKREAKELVELFFEEIRQALEHNEQVKLSGFGNFDLRDKRQRPG 63
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDSTLS 98
R P + I + + V FR G+ LK R+ + T S
Sbjct: 64 RNPKTGEEIPITARRVVTFRPGQKLKARVEAYAGTKS 100
>gi|261252635|ref|ZP_05945208.1| integration host factor alpha subunit [Vibrio orientalis CIP
102891]
gi|260936026|gb|EEX92015.1| integration host factor alpha subunit [Vibrio orientalis CIP
102891]
Length = 98
Score = 92.5 bits (229), Expect = 1e-17, Method: Composition-based stats.
Identities = 27/93 (29%), Positives = 49/93 (52%), Gaps = 1/93 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ L + +K + +D ++ V EE+ +AL +G +V++ GFG+F +R + R
Sbjct: 4 TKADLAENLFEKL-GYSKRDAKETVEAFFEEIRKALESGEQVKLSGFGNFDLRDKNERPG 62
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLNSPD 94
R P + I + + V FR G+ LK R+ +
Sbjct: 63 RNPKTGEDIPISARRVVTFRPGQKLKARVENIK 95
>gi|241663237|ref|YP_002981597.1| integration host factor subunit alpha [Ralstonia pickettii 12D]
gi|240865264|gb|ACS62925.1| integration host factor, alpha subunit [Ralstonia pickettii 12D]
Length = 138
Score = 92.5 bits (229), Expect = 1e-17, Method: Composition-based stats.
Identities = 23/89 (25%), Positives = 45/89 (50%), Gaps = 1/89 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ L + ++ LN ++ + +V + + +AL G V++ GFG+F +R + R
Sbjct: 39 TKAELAEMLFEQ-VGLNKRESKDMVEAFFDVIREALEQGDSVKLSGFGNFQLRDKPQRPG 97
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P ++I + + V F A + LK +
Sbjct: 98 RNPKTGEIIPITARRVVTFHASQKLKALV 126
>gi|146297905|ref|YP_001192496.1| histone family protein DNA-binding protein [Flavobacterium
johnsoniae UW101]
gi|146152323|gb|ABQ03177.1| histone family protein DNA-binding protein [Flavobacterium
johnsoniae UW101]
Length = 90
Score = 92.5 bits (229), Expect = 1e-17, Method: Composition-based stats.
Identities = 33/91 (36%), Positives = 45/91 (49%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI IA + + + + L + L GGR+ + GFGS+SV RAAR
Sbjct: 1 MNKSELIDAIAA-DAGITKAAAKLALESFLGNVGTTLKKGGRISLVGFGSWSVSARAARD 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P K I + K V F+AG L+ +N
Sbjct: 60 GRNPQTGKTIKIAAKNVVKFKAGAELEGAVN 90
>gi|117618302|ref|YP_856844.1| integration host factor, alpha subunit [Aeromonas hydrophila
subsp. hydrophila ATCC 7966]
gi|330829620|ref|YP_004392572.1| integration host factor subunit alpha [Aeromonas veronii B565]
gi|166918496|sp|A0KKP3|IHFA_AERHH RecName: Full=Integration host factor subunit alpha;
Short=IHF-alpha
gi|117559709|gb|ABK36657.1| integration host factor, alpha subunit [Aeromonas hydrophila
subsp. hydrophila ATCC 7966]
gi|328804756|gb|AEB49955.1| Integration host factor subunit alpha [Aeromonas veronii B565]
Length = 98
Score = 92.5 bits (229), Expect = 2e-17, Method: Composition-based stats.
Identities = 26/95 (27%), Positives = 50/95 (52%), Gaps = 1/95 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ + + + ++ ++ + +V EE+ QAL G +V+I GFG+F +R++ R
Sbjct: 4 TKADIAEHLFTQL-GMSKREAKDMVEAFFEEIRQALERGEQVKISGFGNFDLREKNQRPG 62
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDST 96
R P + I + + V FR G+ LK R+ + +
Sbjct: 63 RNPKTGEDIPISARRVVTFRPGQKLKARVENVEPN 97
>gi|328948102|ref|YP_004365439.1| histone family protein DNA-binding protein [Treponema
succinifaciens DSM 2489]
gi|328448426|gb|AEB14142.1| histone family protein DNA-binding protein [Treponema
succinifaciens DSM 2489]
Length = 92
Score = 92.5 bits (229), Expect = 2e-17, Method: Composition-based stats.
Identities = 36/93 (38%), Positives = 52/93 (55%), Gaps = 1/93 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI +A K+ L +D E + LE +++ L G V++ GFG+F+V KRAAR
Sbjct: 1 MNKAELIEKMA-KSTGLPKKDAESALKSFLEIVSKELEKGHDVQLIGFGTFTVGKRAARE 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSP 93
R P + I + P F+ GK LK+RLN
Sbjct: 60 GRNPATGETIKIAASKTPKFKPGKALKDRLNKK 92
>gi|56460501|ref|YP_155782.1| nucleoid DNA-binding protein, IHF alpha subunit [Idiomarina
loihiensis L2TR]
gi|81678356|sp|Q5QXL9|IHFA_IDILO RecName: Full=Integration host factor subunit alpha;
Short=IHF-alpha
gi|56179511|gb|AAV82233.1| Bacterial nucleoid DNA-binding protein, IHF alpha subunit
[Idiomarina loihiensis L2TR]
Length = 98
Score = 92.5 bits (229), Expect = 2e-17, Method: Composition-based stats.
Identities = 26/93 (27%), Positives = 47/93 (50%), Gaps = 1/93 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ L + K ++ QD + +V EE+ AL G +V++ GFG+F +R + R
Sbjct: 4 TKAELAEVLFDKY-GVSKQDAKVLVEDFFEEIRVALERGEQVKLSGFGNFELRTKNQRPG 62
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLNSPD 94
R P + I + + V F+ G+ K R+ + +
Sbjct: 63 RNPKTGEEIPISARRVVTFKPGQKFKSRVENAE 95
>gi|300714862|ref|YP_003739665.1| Bacterial nucleoid protein HU alpha subunit [Erwinia billingiae
Eb661]
gi|299060698|emb|CAX57805.1| Bacterial nucleoid protein HU alpha subunit [Erwinia billingiae
Eb661]
Length = 91
Score = 92.5 bits (229), Expect = 2e-17, Method: Composition-based stats.
Identities = 33/92 (35%), Positives = 47/92 (51%), Gaps = 1/92 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI IA K L+ + + L +T++L G V++ GFG+F V RA R
Sbjct: 1 MNKTQLIDVIADK-ADLSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERT 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P K I + VP F +GK LK+ + S
Sbjct: 60 GRNPQTGKEIKIAAANVPAFVSGKALKDAVKS 91
>gi|299066592|emb|CBJ37782.1| integration host factor (IHF), alpha subunit [Ralstonia
solanacearum CMR15]
Length = 139
Score = 92.5 bits (229), Expect = 2e-17, Method: Composition-based stats.
Identities = 23/89 (25%), Positives = 45/89 (50%), Gaps = 1/89 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ L + ++ LN ++ + +V + + +AL G V++ GFG+F +R + R
Sbjct: 40 TKAELAEMLFEQ-VGLNKRESKDMVEAFFDVIREALEQGDSVKLSGFGNFQLRDKPQRPG 98
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P ++I + + V F A + LK +
Sbjct: 99 RNPKTGEIIPITARRVVTFHASQKLKALV 127
>gi|229106597|ref|ZP_04236839.1| DNA-binding protein HU [Bacillus cereus Rock3-28]
gi|228676835|gb|EEL31439.1| DNA-binding protein HU [Bacillus cereus Rock3-28]
Length = 93
Score = 92.5 bits (229), Expect = 2e-17, Method: Composition-based stats.
Identities = 35/91 (38%), Positives = 51/91 (56%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI +A K +L +D +L+ +T LAN +V+I GFG+F VR+R+AR
Sbjct: 4 MNKTELIKVVADK-AELTQKDAATATQAVLDAITNTLANEEKVQILGFGTFEVRERSART 62
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + I + P F+AGK LKE +
Sbjct: 63 GRNPQTGEEIQIAASKAPAFKAGKELKEAVK 93
>gi|256005929|ref|ZP_05430873.1| histone family protein DNA-binding protein [Clostridium
thermocellum DSM 2360]
gi|281416578|ref|ZP_06247598.1| histone family protein DNA-binding protein [Clostridium
thermocellum JW20]
gi|255990100|gb|EEU00238.1| histone family protein DNA-binding protein [Clostridium
thermocellum DSM 2360]
gi|281407980|gb|EFB38238.1| histone family protein DNA-binding protein [Clostridium
thermocellum JW20]
gi|316939684|gb|ADU73718.1| histone family protein DNA-binding protein [Clostridium
thermocellum DSM 1313]
Length = 91
Score = 92.5 bits (229), Expect = 2e-17, Method: Composition-based stats.
Identities = 34/92 (36%), Positives = 55/92 (59%), Gaps = 1/92 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI +IA K+ L+ ++ E +N + + +AL G +V + GFG+F V+ RAAR
Sbjct: 1 MNKTELINSIASKS-GLSKKNSEAALNAFIASVEEALKKGDKVVLVGFGTFEVKNRAARK 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P ++ I++ P F+AGK LK+ +N
Sbjct: 60 GRNPQTKEEITIPASKAPVFKAGKGLKDIVNK 91
>gi|169350831|ref|ZP_02867769.1| hypothetical protein CLOSPI_01605 [Clostridium spiroforme DSM
1552]
gi|169292417|gb|EDS74550.1| hypothetical protein CLOSPI_01605 [Clostridium spiroforme DSM
1552]
Length = 91
Score = 92.5 bits (229), Expect = 2e-17, Method: Composition-based stats.
Identities = 29/92 (31%), Positives = 49/92 (53%), Gaps = 1/92 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ L+ IA + DV+K++ +E +T AL G +V ++GFG+F +R+R R
Sbjct: 1 MNKTELVEAIASNT-NMTKTDVDKVITSFIEVVTDALVKGEKVSLKGFGNFEIRERGERT 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P + +++ P F+A LK +N
Sbjct: 60 GRNPRTGETMTISASKAPAFKASSALKNAVNK 91
>gi|51246635|ref|YP_066519.1| integration host factor, alpha-subunit [Desulfotalea psychrophila
LSv54]
gi|50877672|emb|CAG37512.1| probable integration host factor, alpha-subunit [Desulfotalea
psychrophila LSv54]
Length = 94
Score = 92.5 bits (229), Expect = 2e-17, Method: Composition-based stats.
Identities = 24/91 (26%), Positives = 46/91 (50%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ LI + KK+ L + V L AL +G + + GFG F+V+ +++R
Sbjct: 4 TKADLIQQVYKKHEGLTKAQATESVEAFLRISKDALISGSDLLLSGFGKFNVKDKSSRRG 63
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P +++E + V F+ L++++N+
Sbjct: 64 RNPQTGDELTLEARRVVTFKPSGILRDKINA 94
>gi|238917311|ref|YP_002930828.1| DNA-binding protein HU-beta [Eubacterium eligens ATCC 27750]
gi|238872671|gb|ACR72381.1| DNA-binding protein HU-beta [Eubacterium eligens ATCC 27750]
Length = 99
Score = 92.5 bits (229), Expect = 2e-17, Method: Composition-based stats.
Identities = 35/99 (35%), Positives = 55/99 (55%), Gaps = 1/99 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS L+ IA+K +L+ +D EK V + + + L G ++++ GFG+F V +RAAR
Sbjct: 1 MNKSELVAAIAEK-AELSKKDAEKAVKAFTDTVAEQLKAGEKIQLVGFGTFEVAERAART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDSTLSN 99
+ P K I + P F+AGK LK+ +N+P
Sbjct: 60 GKNPQTGKAIQIPASKAPKFKAGKALKDVVNTPAKKSKK 98
>gi|269837198|ref|YP_003319426.1| histone family protein DNA-binding protein [Sphaerobacter
thermophilus DSM 20745]
gi|269786461|gb|ACZ38604.1| histone family protein DNA-binding protein [Sphaerobacter
thermophilus DSM 20745]
Length = 97
Score = 92.5 bits (229), Expect = 2e-17, Method: Composition-based stats.
Identities = 30/90 (33%), Positives = 48/90 (53%), Gaps = 1/90 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS L+ +A+K + V +VN + + +ALA+G V I GFG+F + +R AR
Sbjct: 1 MRKSDLVKAVARKVQQ-PESHVSTVVNATFDAIREALASGDEVAITGFGTFRISERGARE 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P + I++ + P F+ G LK +
Sbjct: 60 GRNPQTGERITIPSRRSPSFKPGTQLKRAV 89
>gi|291530746|emb|CBK96331.1| bacterial nucleoid protein Hbs [Eubacterium siraeum 70/3]
gi|291557742|emb|CBL34859.1| bacterial nucleoid protein Hbs [Eubacterium siraeum V10Sc8a]
Length = 91
Score = 92.5 bits (229), Expect = 2e-17, Method: Composition-based stats.
Identities = 33/90 (36%), Positives = 54/90 (60%), Gaps = 1/90 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ L+ +A+K L +D EK ++ L+E +++ LA G ++++ GFG+F VR+RAAR
Sbjct: 1 MTKAELVTMVAEK-ADLTKKDAEKAISALVESISETLAKGEKIQLVGFGTFEVRERAARE 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
P I + VP F+AG LK+ +
Sbjct: 60 GVNPRTGDKIKIAASKVPAFKAGSALKDAV 89
>gi|224369772|ref|YP_002603936.1| IhfB [Desulfobacterium autotrophicum HRM2]
gi|223692489|gb|ACN15772.1| IhfB [Desulfobacterium autotrophicum HRM2]
Length = 91
Score = 92.5 bits (229), Expect = 2e-17, Method: Composition-based stats.
Identities = 32/91 (35%), Positives = 52/91 (57%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K LI + ++ L + +IV + + +T+ALAN RVEIRG SF +++ +
Sbjct: 1 MNKLELISVLKQR-ADLTKTEAAEIVEIFFDSLTEALANDERVEIRGLCSFFIKEYKSYT 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P +++ K +PFF+ GK LKER++
Sbjct: 60 GRNPKTGAKVTIPAKKLPFFKCGKELKERVD 90
>gi|209515147|ref|ZP_03264015.1| histone family protein DNA-binding protein [Burkholderia sp.
H160]
gi|209504401|gb|EEA04389.1| histone family protein DNA-binding protein [Burkholderia sp.
H160]
Length = 92
Score = 92.5 bits (229), Expect = 2e-17, Method: Composition-based stats.
Identities = 30/92 (32%), Positives = 48/92 (52%), Gaps = 1/92 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K LI +A + + ++ ++E +T+A+ +G V++ GFGSFS RAAR+
Sbjct: 1 MNKQELIDAVAA-TTGESKAATGQTIDAIVEAVTKAVVSGDTVQLVGFGSFSTGARAARV 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P + I + F AGK KE +N+
Sbjct: 60 GRNPSTGEEIQIAAAKTVKFTAGKAFKEAVNA 91
>gi|289643158|ref|ZP_06475287.1| histone family protein DNA-binding protein [Frankia symbiont of
Datisca glomerata]
gi|289507050|gb|EFD28020.1| histone family protein DNA-binding protein [Frankia symbiont of
Datisca glomerata]
Length = 98
Score = 92.5 bits (229), Expect = 2e-17, Method: Composition-based stats.
Identities = 29/90 (32%), Positives = 46/90 (51%), Gaps = 1/90 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS L+ IA++ + K V+ + + + +A++ G +V I GFG F +RAAR
Sbjct: 1 MNKSQLVDRIAQQIEG-GRSNATKAVDAVFDAIQEAVSAGEKVTITGFGVFERVERAART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P + + V +VP FR G K +
Sbjct: 60 GRNPATGEPVHVAASVVPKFRPGSEFKASV 89
>gi|298291651|ref|YP_003693590.1| integration host factor, subunit alpha [Starkeya novella DSM 506]
gi|296928162|gb|ADH88971.1| integration host factor, alpha subunit [Starkeya novella DSM 506]
Length = 101
Score = 92.5 bits (229), Expect = 2e-17, Method: Composition-based stats.
Identities = 22/93 (23%), Positives = 47/93 (50%), Gaps = 1/93 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
+ ++ L + ++ L+ + +V +L E+ +A G V++ FGSF VR++ R+
Sbjct: 6 ITRADLCEAVYQR-VGLSRTESAALVETVLSEIADCVARGETVKLSSFGSFVVRQKGERI 64
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSP 93
R P + + + + V F+ LK+++N
Sbjct: 65 GRNPKTGEEVPIAPRRVMVFKPSNILKQQINGE 97
>gi|225849331|ref|YP_002729495.1| DNA-binding protein HU 1 (DNA-binding protein II) (HB)
[Sulfurihydrogenibium azorense Az-Fu1]
gi|225644673|gb|ACN99723.1| DNA-binding protein HU 1 (DNA-binding protein II) (HB)
[Sulfurihydrogenibium azorense Az-Fu1]
Length = 94
Score = 92.5 bits (229), Expect = 2e-17, Method: Composition-based stats.
Identities = 38/95 (40%), Positives = 52/95 (54%), Gaps = 1/95 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI +A+K L + E+ VN +E + +AL+ G R I G G F+VR+R AR
Sbjct: 1 MTKSELIAKVAEK-AGLKKAEAERAVNAAIEAVVEALSKGERTAIPGLGVFNVRERKARK 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDS 95
R P K I + + V F A K+LKE LN+
Sbjct: 60 GRNPRTGKEIKIPARKVVAFTAAKSLKEALNAKKK 94
>gi|94266275|ref|ZP_01289980.1| Histone-like bacterial DNA-binding protein [delta proteobacterium
MLMS-1]
gi|93453126|gb|EAT03597.1| Histone-like bacterial DNA-binding protein [delta proteobacterium
MLMS-1]
Length = 93
Score = 92.5 bits (229), Expect = 2e-17, Method: Composition-based stats.
Identities = 36/90 (40%), Positives = 56/90 (62%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M+K LI +A++ P +D+++ V+++LE + +AL RVEIRGFGSFSVR+R AR
Sbjct: 1 MLKRDLINAVAEEMPGFLKKDLDQAVDIMLESILEALEENRRVEIRGFGSFSVRERKART 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
+ P KV+ + + F K+LK+ L
Sbjct: 61 TKNPRTGKVMHIPPRKNVHFTMSKSLKDGL 90
>gi|30468180|ref|NP_849067.1| DNA-binding protein Hu homolog [Cyanidioschyzon merolae strain 10D]
gi|19911236|dbj|BAB86889.1| histone-like protein of chloroplast [Cyanidioschyzon merolae]
gi|30409280|dbj|BAC76229.1| DNA-binding protein Hu homolog [Cyanidioschyzon merolae strain 10D]
Length = 112
Score = 92.5 bits (229), Expect = 2e-17, Method: Composition-based stats.
Identities = 33/100 (33%), Positives = 58/100 (58%), Gaps = 1/100 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI +A+K L+ + V +++N +L ++ + L G +V++ GFG+FS + RAAR
Sbjct: 1 MDKTELISAVAEK-VGLSKKQVREVINEILSQIAKQLVLGQKVKLVGFGTFSKQYRAARD 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDSTLSNS 100
R P + + + E+ V F G +LK+++ P S S
Sbjct: 60 GRNPRTGERLIIPERHVVVFSPGSDLKQQVQEPMQQASQS 99
>gi|209516669|ref|ZP_03265522.1| integration host factor, alpha subunit [Burkholderia sp. H160]
gi|295677042|ref|YP_003605566.1| integration host factor, alpha subunit [Burkholderia sp. CCGE1002]
gi|209502944|gb|EEA02947.1| integration host factor, alpha subunit [Burkholderia sp. H160]
gi|295436885|gb|ADG16055.1| integration host factor, alpha subunit [Burkholderia sp. CCGE1002]
Length = 136
Score = 92.5 bits (229), Expect = 2e-17, Method: Composition-based stats.
Identities = 25/91 (27%), Positives = 44/91 (48%), Gaps = 1/91 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ L + N LN ++ + +V E + AL +G V++ GFG+F +R + R
Sbjct: 39 TKAELAELLFD-NVGLNKREAKDMVEAFFEVIRDALESGDSVKLSGFGNFQLRDKPQRPG 97
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P + I + + V F A + LK + +
Sbjct: 98 RNPKTGEAIPIAARRVVTFHASQKLKALVEN 128
>gi|167587357|ref|ZP_02379745.1| integration host factor subunit alpha [Burkholderia ubonensis Bu]
Length = 133
Score = 92.5 bits (229), Expect = 2e-17, Method: Composition-based stats.
Identities = 25/91 (27%), Positives = 44/91 (48%), Gaps = 1/91 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ L + + LN ++ + +V E + AL NG V++ GFG+F +R + R
Sbjct: 36 TKAELAELLFD-SVGLNKREAKDMVEAFFEVIRDALENGESVKLSGFGNFQLRDKPQRPG 94
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P + I + + V F A + LK + +
Sbjct: 95 RNPKTGEAIPIAARRVVTFHASQKLKALVEN 125
>gi|295694764|ref|YP_003588002.1| histone family protein DNA-binding protein [Bacillus tusciae DSM
2912]
gi|295410366|gb|ADG04858.1| histone family protein DNA-binding protein [Bacillus tusciae DSM
2912]
Length = 87
Score = 92.5 bits (229), Expect = 2e-17, Method: Composition-based stats.
Identities = 33/84 (39%), Positives = 53/84 (63%), Gaps = 1/84 (1%)
Query: 5 SLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLARAP 64
LI +A+++ L ++ E VN + + + +ALA G +V++ GFG+F R+RAAR+ R P
Sbjct: 2 ELIAKVAERS-GLKKKEAEAAVNSVFDVIGEALAGGEKVQLVGFGTFEPRRRAARIGRNP 60
Query: 65 LAQKVISVEEKMVPFFRAGKNLKE 88
+ IS+ E +VP F+ G LKE
Sbjct: 61 QTGEEISIPESVVPAFKPGNKLKE 84
>gi|167771525|ref|ZP_02443578.1| hypothetical protein ANACOL_02895 [Anaerotruncus colihominis DSM
17241]
gi|167666165|gb|EDS10295.1| hypothetical protein ANACOL_02895 [Anaerotruncus colihominis DSM
17241]
Length = 92
Score = 92.5 bits (229), Expect = 2e-17, Method: Composition-based stats.
Identities = 35/90 (38%), Positives = 54/90 (60%), Gaps = 1/90 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI +A+K+ L+ +D EK V ++E +T+AL G +V + GFG+F + R R
Sbjct: 1 MTKAELITAVAEKS-GLSKKDSEKAVGAIVETITEALKAGDKVALVGFGTFETKHRKERQ 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
P+ QK I++ VP F AGK LK+ +
Sbjct: 60 GINPITQKPITIAAATVPAFSAGKALKDAV 89
>gi|187924726|ref|YP_001896368.1| integration host factor subunit alpha [Burkholderia phytofirmans
PsJN]
gi|187715920|gb|ACD17144.1| integration host factor, alpha subunit [Burkholderia phytofirmans
PsJN]
Length = 136
Score = 92.5 bits (229), Expect = 2e-17, Method: Composition-based stats.
Identities = 25/91 (27%), Positives = 44/91 (48%), Gaps = 1/91 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ L + N LN ++ + +V E + AL +G V++ GFG+F +R + R
Sbjct: 39 TKAELAELLFD-NVGLNKREAKDMVEAFFEVIRDALESGDSVKLSGFGNFQLRDKPQRPG 97
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P + I + + V F A + LK + +
Sbjct: 98 RNPKTGEAIPIAARRVVTFHASQKLKALVEN 128
>gi|158312967|ref|YP_001505475.1| histone family protein DNA-binding protein [Frankia sp. EAN1pec]
gi|288919145|ref|ZP_06413484.1| histone family protein DNA-binding protein [Frankia sp. EUN1f]
gi|158108372|gb|ABW10569.1| histone family protein DNA-binding protein [Frankia sp. EAN1pec]
gi|288349489|gb|EFC83727.1| histone family protein DNA-binding protein [Frankia sp. EUN1f]
Length = 94
Score = 92.5 bits (229), Expect = 2e-17, Method: Composition-based stats.
Identities = 30/90 (33%), Positives = 46/90 (51%), Gaps = 1/90 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS L+ IA++ + K V+ + + + +A+A G +V I GFG F +RAAR
Sbjct: 1 MNKSQLVDRIAQQIEG-GRSNATKAVDAVFDAIQEAVAGGEKVTITGFGVFERVERAART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P + + V +VP FR G K +
Sbjct: 60 GRNPATGEPVHVAASVVPKFRPGSEFKASV 89
>gi|299821635|ref|ZP_07053523.1| DNA-binding protein HU [Listeria grayi DSM 20601]
gi|299817300|gb|EFI84536.1| DNA-binding protein HU [Listeria grayi DSM 20601]
Length = 112
Score = 92.5 bits (229), Expect = 2e-17, Method: Composition-based stats.
Identities = 32/90 (35%), Positives = 52/90 (57%), Gaps = 1/90 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ L+ +A+ L+ +D K V + E + +L+ G +V++ GFG+F VR+RAAR
Sbjct: 24 NKTDLVNNVAE-LADLSKKDAAKAVEAVFETIQTSLSKGEKVQLIGFGNFEVRERAARKG 82
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P ++ I + VP F+ GK LKE +
Sbjct: 83 RNPRTKEEIDIPASKVPAFKPGKALKEAVK 112
>gi|152972862|ref|YP_001338008.1| transcriptional regulator HU subunit alpha [Klebsiella pneumoniae
subsp. pneumoniae MGH 78578]
gi|156935797|ref|YP_001439713.1| transcriptional regulator HU subunit alpha [Cronobacter sakazakii
ATCC BAA-894]
gi|206580695|ref|YP_002241059.1| DNA-binding protein HU, alpha subunit [Klebsiella pneumoniae 342]
gi|238892475|ref|YP_002917209.1| transcriptional regulator HU subunit alpha [Klebsiella pneumoniae
NTUH-K2044]
gi|260596103|ref|YP_003208674.1| transcriptional regulator HU subunit alpha [Cronobacter
turicensis z3032]
gi|262043760|ref|ZP_06016863.1| DNA-binding protein HU-beta [Klebsiella pneumoniae subsp.
rhinoscleromatis ATCC 13884]
gi|288937704|ref|YP_003441763.1| histone family protein DNA-binding protein [Klebsiella variicola
At-22]
gi|290513212|ref|ZP_06552573.1| DNA-binding protein HU-alpha [Klebsiella sp. 1_1_55]
gi|311281445|ref|YP_003943676.1| histone family protein DNA-binding protein [Enterobacter cloacae
SCF1]
gi|330005095|ref|ZP_08305105.1| DNA-binding protein HU-alpha [Klebsiella sp. MS 92-3]
gi|150957711|gb|ABR79741.1| DNA-binding protein HU-alpha (HU-2) [Klebsiella pneumoniae subsp.
pneumoniae MGH 78578]
gi|156534051|gb|ABU78877.1| hypothetical protein ESA_03673 [Cronobacter sakazakii ATCC
BAA-894]
gi|206569753|gb|ACI11529.1| DNA-binding protein HU, alpha subunit [Klebsiella pneumoniae 342]
gi|238544791|dbj|BAH61142.1| conserved hypothetical protein [Klebsiella pneumoniae subsp.
pneumoniae NTUH-K2044]
gi|259038884|gb|EEW40052.1| DNA-binding protein HU-beta [Klebsiella pneumoniae subsp.
rhinoscleromatis ATCC 13884]
gi|260215280|emb|CBA27205.1| DNA-binding protein HU-alpha [Cronobacter turicensis z3032]
gi|288892413|gb|ADC60731.1| histone family protein DNA-binding protein [Klebsiella variicola
At-22]
gi|289774309|gb|EFD82316.1| DNA-binding protein HU-alpha [Klebsiella sp. 1_1_55]
gi|308750640|gb|ADO50392.1| histone family protein DNA-binding protein [Enterobacter cloacae
SCF1]
gi|328536428|gb|EGF62781.1| DNA-binding protein HU-alpha [Klebsiella sp. MS 92-3]
Length = 90
Score = 92.5 bits (229), Expect = 2e-17, Method: Composition-based stats.
Identities = 32/91 (35%), Positives = 46/91 (50%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI IA K L+ + + L +T++L G V++ GFG+F V RA R
Sbjct: 1 MNKTQLIDVIADK-ADLSKAQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERT 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P K I + VP F +GK LK+ +
Sbjct: 60 GRNPQTGKEIKIAAANVPAFVSGKALKDAVK 90
>gi|312794857|ref|YP_004027779.1| DNA-binding protein HU [Burkholderia rhizoxinica HKI 454]
gi|312166632|emb|CBW73635.1| DNA-binding protein HU [Burkholderia rhizoxinica HKI 454]
Length = 92
Score = 92.5 bits (229), Expect = 2e-17, Method: Composition-based stats.
Identities = 29/92 (31%), Positives = 44/92 (47%), Gaps = 1/92 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K LI +A + + + ++ LLE + ++ G V++ GFGSF KRAAR
Sbjct: 1 MNKQELIDAVAAQT-GASKAQTGETLDTLLEIIKTVVSKGDSVQLIGFGSFGSGKRAART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P + I + F AGK K+ +N
Sbjct: 60 GRNPKTGETIKIPAAKTVKFTAGKAFKDVVNE 91
>gi|304399314|ref|ZP_07381179.1| histone family protein DNA-binding protein [Pantoea sp. aB]
gi|308188920|ref|YP_003933051.1| Integration host factor subunit alpha (IHF- alpha) [Pantoea
vagans C9-1]
gi|304353170|gb|EFM17552.1| histone family protein DNA-binding protein [Pantoea sp. aB]
gi|308059430|gb|ADO11602.1| Integration host factor subunit alpha (IHF- alpha) [Pantoea
vagans C9-1]
Length = 90
Score = 92.5 bits (229), Expect = 2e-17, Method: Composition-based stats.
Identities = 32/91 (35%), Positives = 48/91 (52%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI IA+K L+ + + L +T++L +G V++ GFG+F V RA R
Sbjct: 1 MNKTQLIDVIAEK-ADLSKTQAKAALESTLAAITESLKDGDAVQLVGFGTFKVNHRAERT 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P K I + VP F +GK LK+ +
Sbjct: 60 GRNPQTGKEIKIAAANVPAFVSGKALKDAVK 90
>gi|291614260|ref|YP_003524417.1| histone family protein DNA-binding protein [Sideroxydans
lithotrophicus ES-1]
gi|291584372|gb|ADE12030.1| histone family protein DNA-binding protein [Sideroxydans
lithotrophicus ES-1]
Length = 91
Score = 92.5 bits (229), Expect = 2e-17, Method: Composition-based stats.
Identities = 34/90 (37%), Positives = 50/90 (55%), Gaps = 1/90 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
KS LI IA K+ ++ + ++ +E + ++L G V + GFG+F V KRAAR
Sbjct: 3 NKSDLIEAIA-KSADISKAAAGRALDATIESIKKSLKKGELVSLVGFGTFYVGKRAARNG 61
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P I ++ VP FRAGK LK+ +N
Sbjct: 62 RNPRTGATIKIKAAKVPKFRAGKGLKDAVN 91
>gi|88706038|ref|ZP_01103746.1| Integration host factor alpha-subunit [Congregibacter litoralis
KT71]
gi|254515023|ref|ZP_05127084.1| integration host factor, alpha subunit [gamma proteobacterium
NOR5-3]
gi|88699752|gb|EAQ96863.1| Integration host factor alpha-subunit [Congregibacter litoralis
KT71]
gi|219677266|gb|EED33631.1| integration host factor, alpha subunit [gamma proteobacterium
NOR5-3]
Length = 101
Score = 92.5 bits (229), Expect = 2e-17, Method: Composition-based stats.
Identities = 29/98 (29%), Positives = 50/98 (51%), Gaps = 1/98 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
KS + + ++ LN ++ ++IV + EE+ L N +V++ GFG+F +R + R
Sbjct: 5 TKSEMAERLFEEL-GLNKREAKEIVELFFEEIRVCLENNEQVKLSGFGNFDLRDKNQRPG 63
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDSTLSN 99
R P + I + + V FR G+ LK R+ T S
Sbjct: 64 RNPKTGEEIPISARRVVTFRPGQKLKARVEEYAGTESQ 101
>gi|325528721|gb|EGD05791.1| integration host factor subunit alpha [Burkholderia sp. TJI49]
Length = 131
Score = 92.5 bits (229), Expect = 2e-17, Method: Composition-based stats.
Identities = 25/91 (27%), Positives = 44/91 (48%), Gaps = 1/91 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ L + + LN ++ + +V E + AL NG V++ GFG+F +R + R
Sbjct: 39 TKAELAELLFD-SVGLNKREAKDMVEAFFEVIRDALENGESVKLSGFGNFQLRDKPQRPG 97
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P + I + + V F A + LK + +
Sbjct: 98 RNPKTGEAIPIAARRVVTFHASQKLKALVEN 128
>gi|240128445|ref|ZP_04741106.1| integration host factor subunit beta [Neisseria gonorrhoeae
SK-93-1035]
Length = 98
Score = 92.5 bits (229), Expect = 2e-17, Method: Composition-based stats.
Identities = 41/92 (44%), Positives = 57/92 (61%), Gaps = 3/92 (3%)
Query: 1 MIKSSLIGTIAKKNP-KLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAAR 59
M++ L A KN L +DVE V L++ MT++LA G R+EIRGFGSF + R AR
Sbjct: 1 MVR--LAEVFAAKNGTHLLAKDVEYSVKFLVDTMTRSLARGQRIEIRGFGSFDLNHRPAR 58
Query: 60 LARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
+ R P + + V EK VP F+ GK L+ER++
Sbjct: 59 IGRNPKTGERVEVPEKHVPHFKPGKELRERVD 90
>gi|289423339|ref|ZP_06425147.1| DNA-binding protein HU [Peptostreptococcus anaerobius 653-L]
gi|289156270|gb|EFD04927.1| DNA-binding protein HU [Peptostreptococcus anaerobius 653-L]
Length = 92
Score = 92.5 bits (229), Expect = 2e-17, Method: Composition-based stats.
Identities = 33/93 (35%), Positives = 53/93 (56%), Gaps = 2/93 (2%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ L+ IA+K+ L ++ E +N ++ + + L G +V++ GFG+F R+RAAR
Sbjct: 1 MNKAELVAKIAEKS-NLTKKESELALNAFMDVVEETLVAGEKVQLVGFGTFETRERAARS 59
Query: 61 ARAPLA-QKVISVEEKMVPFFRAGKNLKERLNS 92
R P + I + P F+AGK LKE +N
Sbjct: 60 GRNPRKPDETIEIPASKAPVFKAGKGLKELVNK 92
>gi|121594735|ref|YP_986631.1| integration host factor subunit alpha [Acidovorax sp. JS42]
gi|222110652|ref|YP_002552916.1| integration host factor subunit alpha [Acidovorax ebreus TPSY]
gi|120606815|gb|ABM42555.1| histone family protein DNA-binding protein [Acidovorax sp. JS42]
gi|221730096|gb|ACM32916.1| histone family protein DNA-binding protein [Acidovorax ebreus TPSY]
Length = 116
Score = 92.5 bits (229), Expect = 2e-17, Method: Composition-based stats.
Identities = 26/94 (27%), Positives = 50/94 (53%), Gaps = 1/94 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ L + + + LN ++ + +V+ + + Q+L +G V++ GFG+F +R +A R
Sbjct: 23 TKAQLADLLFE-HIGLNKRESKDMVDAFFDLIVQSLVDGQDVKLSGFGNFQIRTKAPRPG 81
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDS 95
R P + I ++ + V F A LKE++ D
Sbjct: 82 RNPRTGEAIPIKARRVVTFHASTKLKEQIQGQDK 115
>gi|291460214|ref|ZP_06599604.1| DNA-binding protein HU [Oribacterium sp. oral taxon 078 str.
F0262]
gi|291417161|gb|EFE90880.1| DNA-binding protein HU [Oribacterium sp. oral taxon 078 str.
F0262]
Length = 95
Score = 92.5 bits (229), Expect = 2e-17, Method: Composition-based stats.
Identities = 33/91 (36%), Positives = 55/91 (60%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M + L+ +AKK +L+ +D E V + + ++++L +V++ GFG+F V KRAAR
Sbjct: 6 MNRMDLVAAVAKK-AELSKKDAEAAVKAVFDSISESLEKDEKVQLIGFGTFEVSKRAARE 64
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + + + E P F+AGK LK+R+N
Sbjct: 65 GRNPRTGETMKIAESKAPRFKAGKALKDRIN 95
>gi|27228588|ref|NP_758638.1| DNA binding protein [Pseudomonas resinovorans]
gi|219857010|ref|YP_002474042.1| DNA binding protein [Pseudomonas sp. CA10]
gi|26106176|dbj|BAC41616.1| DNA binding protein [Pseudomonas resinovorans]
gi|219688938|dbj|BAH10029.1| DNA binding protein [Pseudomonas putida]
Length = 91
Score = 92.5 bits (229), Expect = 2e-17, Method: Composition-based stats.
Identities = 28/92 (30%), Positives = 48/92 (52%), Gaps = 1/92 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M + L+ IA ++ + V +++N L+ + +A G +V + GFG+F K+A R
Sbjct: 1 MNRQELVKAIADESGH-SQSTVGEVLNSLISTVQNVVAGGDKVSLVGFGTFESTKQAERQ 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P I++ + P F GK+ KER+N
Sbjct: 60 GRNPSTGAPITIAASIKPKFTPGKSFKERVNQ 91
>gi|310766093|gb|ADP11043.1| DNA-binding protein HU-alpha [Erwinia sp. Ejp617]
Length = 90
Score = 92.5 bits (229), Expect = 2e-17, Method: Composition-based stats.
Identities = 32/91 (35%), Positives = 48/91 (52%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI IA K L+ + ++ L +T++L G V++ GFG+F V +RA R+
Sbjct: 1 MNKTQLIDIIADK-ADLSKTQAKAALDSTLAAITESLKEGDAVQLVGFGTFKVNQRAGRI 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P I + VP F +GK LKE +
Sbjct: 60 GRNPKTGNEIQIAASTVPAFTSGKALKEAVK 90
>gi|78223040|ref|YP_384787.1| histone-like DNA-binding protein [Geobacter metallireducens
GS-15]
gi|78194295|gb|ABB32062.1| Histone-like DNA-binding protein [Geobacter metallireducens
GS-15]
Length = 93
Score = 92.1 bits (228), Expect = 2e-17, Method: Composition-based stats.
Identities = 39/92 (42%), Positives = 56/92 (60%), Gaps = 1/92 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI +A + L Y+ E+IV+++ + MT A+ R+EIRGFGSF V+ A
Sbjct: 1 MNKSELIEALAAE-KGLTYKKAEEIVSIVFDAMTDAMVRNERIEIRGFGSFVVKDYKAYT 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P I V+ K +PFF+ GK LKER+++
Sbjct: 60 GRNPKTGDPIEVKPKKLPFFKVGKELKERVDN 91
>gi|115380144|ref|ZP_01467177.1| integration host factor, beta subunit [Stigmatella aurantiaca
DW4/3-1]
gi|310823549|ref|YP_003955907.1| integration host factor subunit beta [Stigmatella aurantiaca
DW4/3-1]
gi|115362849|gb|EAU62051.1| integration host factor, beta subunit [Stigmatella aurantiaca
DW4/3-1]
gi|309396621|gb|ADO74080.1| Integration host factor, beta subunit [Stigmatella aurantiaca
DW4/3-1]
Length = 113
Score = 92.1 bits (228), Expect = 2e-17, Method: Composition-based stats.
Identities = 34/99 (34%), Positives = 50/99 (50%), Gaps = 1/99 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M+KS LI + K + + E V + E M +AL G +EIRG G+F V+
Sbjct: 1 MLKSDLINILVTKR-GVTQKQAEATVETIFESMKEALCRGENIEIRGLGAFHVKNYQGYQ 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDSTLSN 99
R P +VI V+ K FR GK L++R+N P + +
Sbjct: 60 GRNPKTGQVIPVKPKRGLLFRTGKELRDRVNRPAAQSAQ 98
>gi|291617253|ref|YP_003519995.1| IhfA [Pantoea ananatis LMG 20103]
gi|291152283|gb|ADD76867.1| IhfA [Pantoea ananatis LMG 20103]
gi|327393707|dbj|BAK11129.1| integration host factor alpha- subunit IhfA [Pantoea ananatis
AJ13355]
Length = 100
Score = 92.1 bits (228), Expect = 2e-17, Method: Composition-based stats.
Identities = 29/98 (29%), Positives = 54/98 (55%), Gaps = 1/98 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ + + +K L+ +D +++V + EE+ +AL NG +V++ GFG+F +R + R
Sbjct: 4 TKAEMSEYLFEKL-GLSKRDAKELVELFFEEVRRALENGEQVKLSGFGNFDLRDKNQRPG 62
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDSTLSN 99
R P + I + + V FR G+ LK R+ + S+
Sbjct: 63 RNPKTGEDIPITARRVVTFRPGQKLKSRVENATPKDSD 100
>gi|300023466|ref|YP_003756077.1| histone family protein DNA-binding protein [Hyphomicrobium
denitrificans ATCC 51888]
gi|299525287|gb|ADJ23756.1| histone family protein DNA-binding protein [Hyphomicrobium
denitrificans ATCC 51888]
Length = 90
Score = 92.1 bits (228), Expect = 2e-17, Method: Composition-based stats.
Identities = 30/91 (32%), Positives = 44/91 (48%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K LI +A ++ +L + +V+ +L + +A+ G V I FG+F V R AR
Sbjct: 1 MSKKDLIDAVA-RDCELTKEKASGVVDAVLAHIREAMKEGHEVRIPDFGTFKVAARKARE 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P I + VP F K LK+ LN
Sbjct: 60 GRNPATGMTIQIPASRVPKFTPAKGLKDALN 90
>gi|170695990|ref|ZP_02887128.1| integration host factor, alpha subunit [Burkholderia graminis
C4D1M]
gi|307730396|ref|YP_003907620.1| integration host factor subunit alpha [Burkholderia sp. CCGE1003]
gi|323526730|ref|YP_004228883.1| integration host factor subunit alpha [Burkholderia sp. CCGE1001]
gi|170139070|gb|EDT07260.1| integration host factor, alpha subunit [Burkholderia graminis
C4D1M]
gi|307584931|gb|ADN58329.1| integration host factor, alpha subunit [Burkholderia sp. CCGE1003]
gi|323383732|gb|ADX55823.1| integration host factor, alpha subunit [Burkholderia sp. CCGE1001]
Length = 136
Score = 92.1 bits (228), Expect = 2e-17, Method: Composition-based stats.
Identities = 25/91 (27%), Positives = 44/91 (48%), Gaps = 1/91 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ L + N LN ++ + +V E + AL +G V++ GFG+F +R + R
Sbjct: 39 TKAELAELLFD-NVGLNKREAKDMVEAFFEVIRDALESGDSVKLSGFGNFQLRDKPQRPG 97
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P + I + + V F A + LK + +
Sbjct: 98 RNPKTGEAIPIAARRVVTFHASQKLKALVEN 128
>gi|300311300|ref|YP_003775392.1| integration host factor alpha-subunit [Herbaspirillum seropedicae
SmR1]
gi|300074085|gb|ADJ63484.1| integration host factor alpha-subunit protein [Herbaspirillum
seropedicae SmR1]
Length = 104
Score = 92.1 bits (228), Expect = 2e-17, Method: Composition-based stats.
Identities = 25/89 (28%), Positives = 45/89 (50%), Gaps = 1/89 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ L + ++ LN ++ + +V +E+ AL G V++ GFG+F +R + R
Sbjct: 5 TKAELAELLFEQ-VGLNKREAKDMVETFFDEIRNALERGEAVKLSGFGNFQLRDKPQRPG 63
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P + I + + V F A + LKE +
Sbjct: 64 RNPKTGEEIPITARRVVTFHASQKLKEMV 92
>gi|91785774|ref|YP_560980.1| DNA-binding protein HU-alpha [Burkholderia xenovorans LB400]
gi|170694282|ref|ZP_02885436.1| histone family protein DNA-binding protein [Burkholderia graminis
C4D1M]
gi|187925902|ref|YP_001897544.1| histone family protein DNA-binding protein [Burkholderia
phytofirmans PsJN]
gi|209515815|ref|ZP_03264678.1| histone family protein DNA-binding protein [Burkholderia sp.
H160]
gi|296157574|ref|ZP_06840409.1| histone family protein DNA-binding protein [Burkholderia sp.
Ch1-1]
gi|307731496|ref|YP_003908720.1| histone family protein DNA-binding protein [Burkholderia sp.
CCGE1003]
gi|323527878|ref|YP_004230031.1| histone family protein DNA-binding protein [Burkholderia sp.
CCGE1001]
gi|91689728|gb|ABE32928.1| DNA-binding protein HU-alpha [Burkholderia xenovorans LB400]
gi|170140705|gb|EDT08879.1| histone family protein DNA-binding protein [Burkholderia graminis
C4D1M]
gi|187717096|gb|ACD18320.1| histone family protein DNA-binding protein [Burkholderia
phytofirmans PsJN]
gi|209503842|gb|EEA03835.1| histone family protein DNA-binding protein [Burkholderia sp.
H160]
gi|295892346|gb|EFG72129.1| histone family protein DNA-binding protein [Burkholderia sp.
Ch1-1]
gi|307586031|gb|ADN59429.1| histone family protein DNA-binding protein [Burkholderia sp.
CCGE1003]
gi|323384880|gb|ADX56971.1| histone family protein DNA-binding protein [Burkholderia sp.
CCGE1001]
Length = 92
Score = 92.1 bits (228), Expect = 2e-17, Method: Composition-based stats.
Identities = 29/92 (31%), Positives = 46/92 (50%), Gaps = 1/92 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K LI +A + + + ++ LLE + ++++ G V++ GFGSF KRAAR
Sbjct: 1 MNKQELIDAVAGQT-GASKAQTGETLDTLLEVIKKSVSKGDAVQLIGFGSFGSGKRAART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P + I + F AGK K+ +N
Sbjct: 60 GRNPKTGETIKIPAAKTVKFTAGKAFKDAVNK 91
>gi|241889358|ref|ZP_04776659.1| DNA-binding protein HU [Gemella haemolysans ATCC 10379]
gi|317496555|ref|ZP_07954904.1| DNA-binding protein [Gemella moribillum M424]
gi|329767598|ref|ZP_08259119.1| DNA-binding protein HU [Gemella haemolysans M341]
gi|329768861|ref|ZP_08260289.1| DNA-binding protein HU [Gemella sanguinis M325]
gi|241863901|gb|EER68282.1| DNA-binding protein HU [Gemella haemolysans ATCC 10379]
gi|316913358|gb|EFV34855.1| DNA-binding protein [Gemella moribillum M424]
gi|328837224|gb|EGF86861.1| DNA-binding protein HU [Gemella sanguinis M325]
gi|328839225|gb|EGF88809.1| DNA-binding protein HU [Gemella haemolysans M341]
Length = 90
Score = 92.1 bits (228), Expect = 2e-17, Method: Composition-based stats.
Identities = 35/91 (38%), Positives = 53/91 (58%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI +A+K+ L + + +E + + LA G +++I GFG+F VR+RAAR
Sbjct: 1 MNKSELISKVAEKS-GLQKKQATAAIEAFVETVEETLAKGEKIQIIGFGNFEVRERAARK 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P +VI + VP F+AGK LK+ +
Sbjct: 60 GRNPQTNEVIEIAASKVPAFKAGKALKDAVK 90
>gi|254481702|ref|ZP_05094945.1| integration host factor, alpha subunit [marine gamma
proteobacterium HTCC2148]
gi|214037831|gb|EEB78495.1| integration host factor, alpha subunit [marine gamma
proteobacterium HTCC2148]
Length = 102
Score = 92.1 bits (228), Expect = 2e-17, Method: Composition-based stats.
Identities = 28/98 (28%), Positives = 50/98 (51%), Gaps = 1/98 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
KS + + ++ LN ++ ++IV + EE+ L N +V++ GFG+F +R ++ R
Sbjct: 5 TKSEMAERLFEEL-GLNKREAKEIVELFFEEIRACLENNEQVKLSGFGNFDLRDKSQRPG 63
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDSTLSN 99
R P + I + + V FR G+ LK R+ T
Sbjct: 64 RNPKTGEEIPISARRVVTFRPGQKLKARVEEYAGTEQQ 101
>gi|123440689|ref|YP_001004681.1| transcriptional regulator HU subunit alpha [Yersinia
enterocolitica subsp. enterocolitica 8081]
gi|332159925|ref|YP_004296502.1| transcriptional regulator HU subunit alpha [Yersinia
enterocolitica subsp. palearctica 105.5R(r)]
gi|122087650|emb|CAL10432.1| DNA-binding protein HU-alpha [Yersinia enterocolitica subsp.
enterocolitica 8081]
gi|318607524|emb|CBY29022.1| DNA-binding protein HU-alpha [Yersinia enterocolitica subsp.
palearctica Y11]
gi|325664155|gb|ADZ40799.1| transcriptional regulator HU subunit alpha [Yersinia
enterocolitica subsp. palearctica 105.5R(r)]
gi|330863075|emb|CBX73206.1| DNA-binding protein HU-alpha [Yersinia enterocolitica W22703]
Length = 91
Score = 92.1 bits (228), Expect = 2e-17, Method: Composition-based stats.
Identities = 32/92 (34%), Positives = 46/92 (50%), Gaps = 1/92 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI IA K L+ + + L +T++L G V++ GFG+F V R R
Sbjct: 1 MNKTQLIDVIADK-ADLSKAQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRNERT 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P K I + VP F +GK LK+ + S
Sbjct: 60 GRNPQTGKEIKIAAANVPAFVSGKALKDAVKS 91
>gi|86742300|ref|YP_482700.1| histone-like DNA-binding protein [Frankia sp. CcI3]
gi|86569162|gb|ABD12971.1| histone-like DNA-binding protein [Frankia sp. CcI3]
Length = 94
Score = 92.1 bits (228), Expect = 2e-17, Method: Composition-based stats.
Identities = 30/90 (33%), Positives = 47/90 (52%), Gaps = 1/90 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS L+ IA++ + K V+ + + + +A+A+G +V I GFG F +RAAR
Sbjct: 1 MNKSQLVDRIAQQIEG-GRSNATKAVDAVFDAIQEAVASGEKVTITGFGVFERVERAART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P + + V +VP FR G K +
Sbjct: 60 GRNPATGEPVHVAASVVPKFRPGSEFKSSV 89
>gi|89901030|ref|YP_523501.1| histone-like protein DNA-binding protein [Rhodoferax ferrireducens
T118]
gi|89345767|gb|ABD69970.1| bacterial nucleoid protein Hbs [Rhodoferax ferrireducens T118]
Length = 112
Score = 92.1 bits (228), Expect = 2e-17, Method: Composition-based stats.
Identities = 33/90 (36%), Positives = 47/90 (52%), Gaps = 1/90 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ LI IA N ++ + + + + L GG V + GFG+F+V KRAAR+
Sbjct: 24 NKTELIEHIAL-NADISKAAATRALESAIGAVKITLKKGGSVSLVGFGTFAVGKRAARVG 82
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P I ++ VP FR GK LK+ LN
Sbjct: 83 RNPRTGDAIKIKAAKVPKFRPGKALKDALN 112
>gi|307945252|ref|ZP_07660588.1| integration host factor subunit alpha [Roseibium sp. TrichSKD4]
gi|307771125|gb|EFO30350.1| integration host factor subunit alpha [Roseibium sp. TrichSKD4]
Length = 104
Score = 92.1 bits (228), Expect = 2e-17, Method: Composition-based stats.
Identities = 24/91 (26%), Positives = 47/91 (51%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
+ ++ L + +K L+ + ++V +L E++ L G V++ FGSF VR + R+
Sbjct: 6 ITRADLCEAVYQK-VGLSRTESSELVERVLAEISDCLVTGESVKLSSFGSFVVRSKGERI 64
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + + + + V F+ LK+R+N
Sbjct: 65 GRNPKTGEEVPISPRRVMVFKPSNVLKQRIN 95
>gi|186476310|ref|YP_001857780.1| integration host factor subunit alpha [Burkholderia phymatum
STM815]
gi|184192769|gb|ACC70734.1| integration host factor, alpha subunit [Burkholderia phymatum
STM815]
Length = 117
Score = 92.1 bits (228), Expect = 2e-17, Method: Composition-based stats.
Identities = 25/91 (27%), Positives = 44/91 (48%), Gaps = 1/91 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ L + N LN ++ + +V E + AL +G V++ GFG+F +R + R
Sbjct: 20 TKAELAELLFD-NVGLNKREAKDMVEAFFEVIRDALESGDSVKLSGFGNFQLRDKPQRPG 78
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P + I + + V F A + LK + +
Sbjct: 79 RNPKTGEAIPIAARRVVTFHASQKLKALVEN 109
>gi|269792401|ref|YP_003317305.1| histone family protein DNA-binding protein [Thermanaerovibrio
acidaminovorans DSM 6589]
gi|269100036|gb|ACZ19023.1| histone family protein DNA-binding protein [Thermanaerovibrio
acidaminovorans DSM 6589]
Length = 93
Score = 92.1 bits (228), Expect = 2e-17, Method: Composition-based stats.
Identities = 32/92 (34%), Positives = 53/92 (57%), Gaps = 1/92 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ L+ + K ++ + + V+ + + +AL G +V++ GFG+F V++RAAR
Sbjct: 1 MTKADLVNELVKSVEDISKKKASEAVDAIFNIIQEALVKGDKVQLVGFGTFEVQERAARQ 60
Query: 61 ARAPLAQ-KVISVEEKMVPFFRAGKNLKERLN 91
R P K I + K P FRAGK+LK+ +N
Sbjct: 61 GRNPQDPTKTIEIPAKKAPVFRAGKSLKDAVN 92
>gi|325983776|ref|YP_004296177.1| histone family protein DNA-binding protein [Nitrosomonas sp.
AL212]
gi|325533295|gb|ADZ28015.1| histone family protein DNA-binding protein [Nitrosomonas sp.
AL212]
Length = 93
Score = 92.1 bits (228), Expect = 2e-17, Method: Composition-based stats.
Identities = 29/89 (32%), Positives = 50/89 (56%), Gaps = 1/89 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI +A ++ + ++N LLE + + +A+G V++ GFG+FSV +R +R
Sbjct: 1 MNKTELIEAVATRS-QTTKTQTTALLNGLLEVIQETIASGNDVQLVGFGTFSVTERTSRE 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKER 89
R P + I++ K V F+ GK L +
Sbjct: 60 GRNPATGETITIPAKKVVKFKPGKALSDA 88
>gi|295134367|ref|YP_003585043.1| histone-like DNA-binding protein [Zunongwangia profunda SM-A87]
gi|294982382|gb|ADF52847.1| histone-like DNA-binding protein [Zunongwangia profunda SM-A87]
Length = 90
Score = 92.1 bits (228), Expect = 2e-17, Method: Composition-based stats.
Identities = 33/91 (36%), Positives = 51/91 (56%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI +A+ + ++ +K + L + +L G RV + GFGS+SV KRAAR
Sbjct: 1 MNKTDLIDAMAE-DAGISKAAAKKALESFLGGIETSLKKGDRVSLVGFGSWSVSKRAARE 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P K I + K V F+AG +L++ +N
Sbjct: 60 GRNPQTGKTIKIAAKNVVKFKAGADLQKAVN 90
>gi|289208103|ref|YP_003460169.1| integration host factor, subunit alpha [Thioalkalivibrio sp.
K90mix]
gi|288943734|gb|ADC71433.1| integration host factor, alpha subunit [Thioalkalivibrio sp.
K90mix]
Length = 99
Score = 92.1 bits (228), Expect = 2e-17, Method: Composition-based stats.
Identities = 32/95 (33%), Positives = 53/95 (55%), Gaps = 1/95 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ L T+ ++ LN ++ ++ V M EEM Q+L +G V++ GFG+F +R + R
Sbjct: 5 TKADLAATLNEEL-GLNKREAKEFVEMFFEEMRQSLEDGEGVKLSGFGNFILRDKNQRPG 63
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDST 96
R P + I V + V FR G+ L+ER+ S +
Sbjct: 64 RNPKTGEEIPVSARRVVTFRPGQKLRERVESYAGS 98
>gi|291613189|ref|YP_003523346.1| histone family protein DNA-binding protein [Sideroxydans
lithotrophicus ES-1]
gi|291583301|gb|ADE10959.1| histone family protein DNA-binding protein [Sideroxydans
lithotrophicus ES-1]
Length = 95
Score = 92.1 bits (228), Expect = 2e-17, Method: Composition-based stats.
Identities = 37/88 (42%), Positives = 51/88 (57%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M +S LI +A++ P L +DVE V ++L+++ ++ G RVEIRGFGSF + R R
Sbjct: 1 MNRSDLISKLAEQTPNLQAKDVELGVRVILDKLATTISKGNRVEIRGFGSFGLNYRKPRN 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKE 88
R P I V K P F+ GK LKE
Sbjct: 61 GRNPKTGAKIEVAAKYHPRFKPGKALKE 88
>gi|83647266|ref|YP_435701.1| integration host factor subunit alpha [Hahella chejuensis KCTC
2396]
gi|123753568|sp|Q2SDJ8|IHFA_HAHCH RecName: Full=Integration host factor subunit alpha;
Short=IHF-alpha
gi|83635309|gb|ABC31276.1| integration host factor, alpha subunit [Hahella chejuensis KCTC
2396]
Length = 100
Score = 92.1 bits (228), Expect = 2e-17, Method: Composition-based stats.
Identities = 25/97 (25%), Positives = 52/97 (53%), Gaps = 1/97 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ + + ++ LN ++ +++V +E+ AL++ +V++ GFG+F +R + R
Sbjct: 5 TKADMAERLYQE-VGLNKREAKEMVEAFFDEVRDALSHNEQVKLSGFGNFDLRDKKQRPG 63
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDSTLS 98
R P + I + + V FR G+ LK ++ + T S
Sbjct: 64 RNPKTGEEIPITARRVVTFRPGQKLKAKVEAYAGTQS 100
>gi|46580273|ref|YP_011081.1| DNA-binding protein HU subunit beta [Desulfovibrio vulgaris str.
Hildenborough]
gi|120602345|ref|YP_966745.1| histone family protein DNA-binding protein [Desulfovibrio
vulgaris DP4]
gi|46449690|gb|AAS96340.1| DNA-binding protein HU, beta subunit, putative [Desulfovibrio
vulgaris str. Hildenborough]
gi|120562574|gb|ABM28318.1| histone family protein DNA-binding protein [Desulfovibrio
vulgaris DP4]
gi|311233745|gb|ADP86599.1| histone family protein DNA-binding protein [Desulfovibrio
vulgaris RCH1]
Length = 93
Score = 92.1 bits (228), Expect = 2e-17, Method: Composition-based stats.
Identities = 39/92 (42%), Positives = 55/92 (59%), Gaps = 1/92 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI T++++ + ++ +VN ++ M +L G RVEIRGFGSF ++
Sbjct: 1 MNKSELIRTLSEET-NIPIEEATIVVNTFIDNMKDSLLAGDRVEIRGFGSFKIKDYGGYS 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P K++ VE K +PFFRAGK LKE LN
Sbjct: 60 GRNPKTGKMVDVEPKRLPFFRAGKELKEFLNE 91
>gi|15675394|ref|NP_269568.1| histone-like DNA-binding protein [Streptococcus pyogenes M1 GAS]
gi|21910682|ref|NP_664950.1| putative histone-like DNA-binding protein [Streptococcus pyogenes
MGAS315]
gi|28895628|ref|NP_801978.1| histone-like DNA-binding protein [Streptococcus pyogenes SSI-1]
gi|50914589|ref|YP_060561.1| DNA-binding protein HU [Streptococcus pyogenes MGAS10394]
gi|71903824|ref|YP_280627.1| DNA-binding protein HU [Streptococcus pyogenes MGAS6180]
gi|71911036|ref|YP_282586.1| DNA-binding protein HU [Streptococcus pyogenes MGAS5005]
gi|94988847|ref|YP_596948.1| DNA-binding protein HU [Streptococcus pyogenes MGAS9429]
gi|94990748|ref|YP_598848.1| DNA-binding protein HU [Streptococcus pyogenes MGAS10270]
gi|94992738|ref|YP_600837.1| DNA-binding protein HU [Streptococcus pyogenes MGAS2096]
gi|94994725|ref|YP_602823.1| DNA-binding protein HU [Streptococcus pyogenes MGAS10750]
gi|139473485|ref|YP_001128201.1| DNA-binding protein HU [Streptococcus pyogenes str. Manfredo]
gi|209559658|ref|YP_002286130.1| DNA-binding protein HU [Streptococcus pyogenes NZ131]
gi|306827059|ref|ZP_07460357.1| DNA-binding protein HU [Streptococcus pyogenes ATCC 10782]
gi|61222559|sp|P0A3I0|DBH_STRP3 RecName: Full=DNA-binding protein HU
gi|73919007|sp|Q5XB35|DBH_STRP6 RecName: Full=DNA-binding protein HU
gi|73919008|sp|P0C097|DBH_STRP8 RecName: Full=DNA-binding protein HU
gi|76365063|sp|P0C0H2|DBH_STRPY RecName: Full=DNA-binding protein HU
gi|81175249|sp|P0C0H3|DBH_STRP1 RecName: Full=DNA-binding protein HU
gi|5209328|gb|AAD40808.1|L38946_1 histone-like DNA-binding protein [Streptococcus pyogenes]
gi|13622579|gb|AAK34289.1| histone-like DNA-binding protein [Streptococcus pyogenes M1 GAS]
gi|21904884|gb|AAM79753.1| putative histone-like DNA-binding protein [Streptococcus pyogenes
MGAS315]
gi|28810877|dbj|BAC63811.1| putative histone-like DNA-binding protein [Streptococcus pyogenes
SSI-1]
gi|50903663|gb|AAT87378.1| DNA-binding protein HU [Streptococcus pyogenes MGAS10394]
gi|71802919|gb|AAX72272.1| DNA-binding protein HU [Streptococcus pyogenes MGAS6180]
gi|71853818|gb|AAZ51841.1| DNA-binding protein HU [Streptococcus pyogenes MGAS5005]
gi|94542355|gb|ABF32404.1| DNA-binding protein HU [Streptococcus pyogenes MGAS9429]
gi|94544256|gb|ABF34304.1| DNA-binding protein HU [Streptococcus pyogenes MGAS10270]
gi|94546246|gb|ABF36293.1| DNA-binding protein HU [Streptococcus pyogenes MGAS2096]
gi|94548233|gb|ABF38279.1| DNA-binding protein HU [Streptococcus pyogenes MGAS10750]
gi|134271732|emb|CAM29965.1| DNA-binding protein HU [Streptococcus pyogenes str. Manfredo]
gi|209540859|gb|ACI61435.1| DNA-binding protein HU [Streptococcus pyogenes NZ131]
gi|304430805|gb|EFM33816.1| DNA-binding protein HU [Streptococcus pyogenes ATCC 10782]
Length = 91
Score = 92.1 bits (228), Expect = 2e-17, Method: Composition-based stats.
Identities = 32/90 (35%), Positives = 48/90 (53%), Gaps = 1/90 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K LI +A+ +L +D V+ + + LA G +V++ GFG+F VR+RAAR
Sbjct: 3 NKQDLIAKVAEAT-ELTKKDSAAAVDAVFSTIEAFLAEGEKVQLIGFGNFEVRERAARKG 61
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P I + VP F+AGK LK+ +
Sbjct: 62 RNPQTGAEIEIAASKVPAFKAGKALKDAVK 91
>gi|260772974|ref|ZP_05881890.1| integration host factor alpha subunit [Vibrio metschnikovii CIP
69.14]
gi|260612113|gb|EEX37316.1| integration host factor alpha subunit [Vibrio metschnikovii CIP
69.14]
Length = 98
Score = 92.1 bits (228), Expect = 2e-17, Method: Composition-based stats.
Identities = 28/91 (30%), Positives = 50/91 (54%), Gaps = 1/91 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ L + +K + +D + V + EE+ +AL NG +V++ GFG+F +R ++ R
Sbjct: 4 TKADLAENLFEKL-GFSKRDAKDTVEVFFEEIRKALENGEQVKLSGFGNFDLRDKSERPG 62
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P + I + + V FR G+ LK R+ +
Sbjct: 63 RNPKTGEDIPISARRVVTFRPGQKLKARVEN 93
>gi|33152425|ref|NP_873778.1| integration host factor, beta subunit [Haemophilus ducreyi
35000HP]
gi|71152154|sp|Q7VLR8|IHFB_HAEDU RecName: Full=Integration host factor subunit beta;
Short=IHF-beta
gi|33148648|gb|AAP96167.1| integration host factor, beta subunit [Haemophilus ducreyi
35000HP]
Length = 93
Score = 92.1 bits (228), Expect = 2e-17, Method: Composition-based stats.
Identities = 40/91 (43%), Positives = 53/91 (58%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI + NP L + VE V +LE + L RVEIRGFGSFS+ R R+
Sbjct: 1 MTKSELIEKLIALNPSLPEKAVEDGVKDILENIMLTLEQAKRVEIRGFGSFSLHYRQPRI 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + ++ K VP F+AGK+LKER++
Sbjct: 61 GRNPKTGASVKLDAKYVPHFKAGKDLKERVD 91
>gi|113867363|ref|YP_725852.1| integration host factor subunit alpha [Ralstonia eutropha H16]
gi|113526139|emb|CAJ92484.1| integration host factor alpha subunit [Ralstonia eutropha H16]
Length = 128
Score = 92.1 bits (228), Expect = 2e-17, Method: Composition-based stats.
Identities = 24/89 (26%), Positives = 44/89 (49%), Gaps = 1/89 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ L + + LN ++ + +V + + +AL G V++ GFG+F +R + R
Sbjct: 33 TKAELAEMLFDQ-VGLNKRESKDMVEAFFDVIREALEQGDSVKLSGFGNFQLRDKPQRPG 91
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P +VI + + V F A + LK +
Sbjct: 92 RNPKTGEVIPITARRVVTFHASQKLKGLV 120
>gi|288817831|ref|YP_003432178.1| histone-like DNA-binding protein HU [Hydrogenobacter thermophilus
TK-6]
gi|288787230|dbj|BAI68977.1| histone-like DNA-binding protein HU [Hydrogenobacter thermophilus
TK-6]
gi|308751429|gb|ADO44912.1| histone family protein DNA-binding protein [Hydrogenobacter
thermophilus TK-6]
Length = 90
Score = 92.1 bits (228), Expect = 2e-17, Method: Composition-based stats.
Identities = 31/91 (34%), Positives = 48/91 (52%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ L+ +A K + + + + + + +L G RV I GFG F+VRKRAAR
Sbjct: 1 MTKAELVSAVA-KGAGITKKQADAALKSAISAIAGSLKKGERVAIPGFGIFTVRKRAARK 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P VI++ + V FR K+L+E +
Sbjct: 60 GRNPRTGAVINIPARKVVTFRPAKDLRESIK 90
>gi|238785563|ref|ZP_04629544.1| DNA-binding protein HU-alpha [Yersinia bercovieri ATCC 43970]
gi|238794946|ref|ZP_04638543.1| DNA-binding protein HU-alpha [Yersinia intermedia ATCC 29909]
gi|238798678|ref|ZP_04642152.1| DNA-binding protein HU-alpha [Yersinia mollaretii ATCC 43969]
gi|238713548|gb|EEQ05579.1| DNA-binding protein HU-alpha [Yersinia bercovieri ATCC 43970]
gi|238717496|gb|EEQ09338.1| DNA-binding protein HU-alpha [Yersinia mollaretii ATCC 43969]
gi|238725704|gb|EEQ17261.1| DNA-binding protein HU-alpha [Yersinia intermedia ATCC 29909]
Length = 91
Score = 92.1 bits (228), Expect = 2e-17, Method: Composition-based stats.
Identities = 32/92 (34%), Positives = 47/92 (51%), Gaps = 1/92 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI IA K L+ + + L +T++L +G V++ GFG+F V R R
Sbjct: 1 MNKTQLIDVIADK-ADLSKAQAKAALESTLAAITESLKDGDPVQLVGFGTFKVNHRNERT 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P K I + VP F +GK LK+ + S
Sbjct: 60 GRNPQTGKEIKIAAANVPAFVSGKALKDSVKS 91
>gi|298208491|ref|YP_003716670.1| probable DNA-binding protein HU [Croceibacter atlanticus
HTCC2559]
gi|83848414|gb|EAP86283.1| probable DNA-binding protein HU [Croceibacter atlanticus
HTCC2559]
Length = 90
Score = 92.1 bits (228), Expect = 2e-17, Method: Composition-based stats.
Identities = 33/91 (36%), Positives = 51/91 (56%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI +A+ + ++ +K + L + + L G R+ + GFGS+SV KRAAR
Sbjct: 1 MNKSDLIDAMAE-DAGVSKAAAKKALESFLGHIEKGLKKGDRISLVGFGSWSVSKRAARE 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P K I + K V F+AG +L++ +N
Sbjct: 60 GRNPQTGKTIKIAAKNVVKFKAGSDLQKAVN 90
>gi|323698417|ref|ZP_08110329.1| histone family protein DNA-binding protein [Desulfovibrio sp.
ND132]
gi|323458349|gb|EGB14214.1| histone family protein DNA-binding protein [Desulfovibrio
desulfuricans ND132]
Length = 90
Score = 92.1 bits (228), Expect = 2e-17, Method: Composition-based stats.
Identities = 29/91 (31%), Positives = 48/91 (52%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ L+ IA+K + E +N +L+ + LA G ++ + GFG+FSV +R AR
Sbjct: 1 MTKAELVAKIAEKI-GTSKAQAEASMNAILDTIQDELAAGNKLTLTGFGTFSVSERKART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P +++ V F+ GK LK+ +
Sbjct: 60 GRNPRTGTALNIPACKVAQFKPGKVLKDAVK 90
>gi|332529106|ref|ZP_08405070.1| histone family protein DNA-binding protein [Hylemonella gracilis
ATCC 19624]
gi|332041329|gb|EGI77691.1| histone family protein DNA-binding protein [Hylemonella gracilis
ATCC 19624]
Length = 90
Score = 92.1 bits (228), Expect = 2e-17, Method: Composition-based stats.
Identities = 34/91 (37%), Positives = 49/91 (53%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI IA KN ++ + + ++ + L GG V + GFG+F+V KRAAR
Sbjct: 1 MNKTELIEHIA-KNADISKAAATRALESVIGAVKTTLKKGGSVSLVGFGTFAVTKRAART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P I ++ +P FR GK LK+ LN
Sbjct: 60 GRNPRTGDTIKIKAAKLPKFRPGKALKDALN 90
>gi|254520528|ref|ZP_05132584.1| histone family protein DNA-binding protein [Clostridium sp.
7_2_43FAA]
gi|226914277|gb|EEH99478.1| histone family protein DNA-binding protein [Clostridium sp.
7_2_43FAA]
Length = 91
Score = 92.1 bits (228), Expect = 2e-17, Method: Composition-based stats.
Identities = 35/92 (38%), Positives = 58/92 (63%), Gaps = 1/92 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI ++++K+ KL +D E + +E + +AL G +V++ GFG+F R+RAAR
Sbjct: 1 MNKAELITSMSEKS-KLTKKDAELALKSFIESVEEALEKGEKVQLVGFGTFETRERAARE 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P ++ I++ VP F+AGK KE++N
Sbjct: 60 GRNPRTKETINIPASTVPVFKAGKEFKEKVNK 91
>gi|56707752|ref|YP_169648.1| histone-like protein HU form B [Francisella tularensis subsp.
tularensis SCHU S4]
gi|89256252|ref|YP_513614.1| histone-like protein HU form B [Francisella tularensis subsp.
holarctica LVS]
gi|110670223|ref|YP_666780.1| histone-like protein HU form B [Francisella tularensis subsp.
tularensis FSC198]
gi|115314709|ref|YP_763432.1| DNA-binding protein HU-beta [Francisella tularensis subsp.
holarctica OSU18]
gi|134302066|ref|YP_001122035.1| DNA-binding protein HU-beta [Francisella tularensis subsp.
tularensis WY96-3418]
gi|156502313|ref|YP_001428378.1| DNA-binding protein HU [Francisella tularensis subsp. holarctica
FTNF002-00]
gi|187931474|ref|YP_001891458.1| DNA-binding protein HU-beta [Francisella tularensis subsp.
mediasiatica FSC147]
gi|224456822|ref|ZP_03665295.1| DNA-binding protein HU-beta [Francisella tularensis subsp.
tularensis MA00-2987]
gi|254367591|ref|ZP_04983612.1| histone-like protein hu form B [Francisella tularensis subsp.
holarctica 257]
gi|254369241|ref|ZP_04985253.1| hypothetical protein FTAG_00194 [Francisella tularensis subsp.
holarctica FSC022]
gi|254370256|ref|ZP_04986261.1| DNA-binding protein HU-beta [Francisella tularensis subsp.
tularensis FSC033]
gi|254874565|ref|ZP_05247275.1| DNA-binding protein [Francisella tularensis subsp. tularensis
MA00-2987]
gi|290953592|ref|ZP_06558213.1| DNA-binding protein HU-beta [Francisella tularensis subsp.
holarctica URFT1]
gi|295313093|ref|ZP_06803783.1| DNA-binding protein HU-beta [Francisella tularensis subsp.
holarctica URFT1]
gi|56604244|emb|CAG45260.1| Histone-like protein HU form B [Francisella tularensis subsp.
tularensis SCHU S4]
gi|89144083|emb|CAJ79334.1| Histone-like protein HU form B [Francisella tularensis subsp.
holarctica LVS]
gi|110320556|emb|CAL08643.1| Histone-like protein HU form B [Francisella tularensis subsp.
tularensis FSC198]
gi|115129608|gb|ABI82795.1| DNA-binding protein HU-beta [Francisella tularensis subsp.
holarctica OSU18]
gi|134049843|gb|ABO46914.1| DNA-binding protein HU-beta [Francisella tularensis subsp.
tularensis WY96-3418]
gi|134253402|gb|EBA52496.1| histone-like protein hu form B [Francisella tularensis subsp.
holarctica 257]
gi|151568499|gb|EDN34153.1| DNA-binding protein HU-beta [Francisella tularensis subsp.
tularensis FSC033]
gi|156252916|gb|ABU61422.1| DNA-binding protein HU [Francisella tularensis subsp. holarctica
FTNF002-00]
gi|157122191|gb|EDO66331.1| hypothetical protein FTAG_00194 [Francisella tularensis subsp.
holarctica FSC022]
gi|187712383|gb|ACD30680.1| DNA-binding protein HU-beta [Francisella tularensis subsp.
mediasiatica FSC147]
gi|254840564|gb|EET19000.1| DNA-binding protein [Francisella tularensis subsp. tularensis
MA00-2987]
gi|282158923|gb|ADA78314.1| DNA-binding protein HU-beta [Francisella tularensis subsp.
tularensis NE061598]
Length = 90
Score = 92.1 bits (228), Expect = 2e-17, Method: Composition-based stats.
Identities = 30/91 (32%), Positives = 49/91 (53%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS L+ IAK+ + + ++ + +T+AL NG V + GFG+F V++R+ R
Sbjct: 1 MNKSELVSAIAKE-ADVTKEVASNTLDATIAAVTKALKNGDSVTLVGFGTFQVKERSPRE 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + I + VP F+A K LK+ +
Sbjct: 60 GRNPKTGETIKIPASKVPSFKASKGLKDAVK 90
>gi|330961377|gb|EGH61637.1| HU family DNA-binding protein [Pseudomonas syringae pv.
maculicola str. ES4326]
Length = 91
Score = 92.1 bits (228), Expect = 2e-17, Method: Composition-based stats.
Identities = 28/91 (30%), Positives = 46/91 (50%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K ++ IA+K L ++N +LE +T AL+ V + GFG+F R R AR
Sbjct: 1 MRKPEVVAAIAEK-ADLTKDQSTLVLNAILEHITDALSRKDSVTLVGFGTFLQRHRGART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
+ P + + ++ F+ GK LK+ +N
Sbjct: 60 GKNPQTGEPVKIKASNTVAFKPGKALKDSVN 90
>gi|293394036|ref|ZP_06638340.1| DNA-binding protein HU-beta [Serratia odorifera DSM 4582]
gi|291423476|gb|EFE96701.1| DNA-binding protein HU-beta [Serratia odorifera DSM 4582]
Length = 90
Score = 92.1 bits (228), Expect = 2e-17, Method: Composition-based stats.
Identities = 32/91 (35%), Positives = 46/91 (50%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI IA K L+ + + L +T++L G V++ GFG+F V RA R
Sbjct: 1 MNKTQLIDVIADK-ADLSKAQAKLALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERT 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P K I + VP F +GK LK+ +
Sbjct: 60 GRNPQTGKEIKIAAANVPAFVSGKALKDAVK 90
>gi|221104615|ref|XP_002170589.1| PREDICTED: similar to DNA binding protein hu-like protein [Hydra
magnipapillata]
Length = 90
Score = 92.1 bits (228), Expect = 2e-17, Method: Composition-based stats.
Identities = 27/91 (29%), Positives = 40/91 (43%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K LI ++ K L +D + V+ + + + L GFGSF+V+ AR
Sbjct: 1 MNKQDLIDFVSAKT-GLTKKDSGQAVDSVFDGIISGLKASKDARFVGFGSFNVQATMARK 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P I + F+AGK KE +N
Sbjct: 60 GRNPRTGAEIDIPASNRITFKAGKEFKESVN 90
>gi|115351418|ref|YP_773257.1| integration host factor subunit alpha [Burkholderia ambifaria AMMD]
gi|172060457|ref|YP_001808109.1| integration host factor subunit alpha [Burkholderia ambifaria
MC40-6]
gi|115281406|gb|ABI86923.1| integration host factor, alpha subunit [Burkholderia ambifaria
AMMD]
gi|171992974|gb|ACB63893.1| integration host factor, alpha subunit [Burkholderia ambifaria
MC40-6]
Length = 131
Score = 92.1 bits (228), Expect = 2e-17, Method: Composition-based stats.
Identities = 25/91 (27%), Positives = 44/91 (48%), Gaps = 1/91 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ L + + LN ++ + +V E + AL NG V++ GFG+F +R + R
Sbjct: 39 TKAELAELLFD-SVGLNKREAKDMVEAFFEVIRDALENGESVKLSGFGNFQLRDKPQRPG 97
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P + I + + V F A + LK + +
Sbjct: 98 RNPKTGEAIPIAARRVVTFHASQKLKALVEN 128
>gi|312126573|ref|YP_003991447.1| histone family protein DNA-binding protein [Caldicellulosiruptor
hydrothermalis 108]
gi|311776592|gb|ADQ06078.1| histone family protein DNA-binding protein [Caldicellulosiruptor
hydrothermalis 108]
Length = 92
Score = 92.1 bits (228), Expect = 2e-17, Method: Composition-based stats.
Identities = 36/90 (40%), Positives = 56/90 (62%), Gaps = 1/90 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K LI +++K+ L +D EK +N L+E + +AL+ G ++++ GFGSF VR+RA R
Sbjct: 1 MSKEELIKAMSQKS-GLTKKDSEKALNALIESIQEALSKGEKIQLVGFGSFEVRQRAERK 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P ++ I + VP F+AGK LK +
Sbjct: 60 GRNPQTKEEIIIPATKVPVFKAGKMLKRAV 89
>gi|22124414|ref|NP_667837.1| transcriptional regulator HU subunit alpha [Yersinia pestis KIM
10]
gi|45442848|ref|NP_994387.1| transcriptional regulator HU subunit alpha [Yersinia pestis
biovar Microtus str. 91001]
gi|51594652|ref|YP_068843.1| transcriptional regulator HU subunit alpha [Yersinia
pseudotuberculosis IP 32953]
gi|108809595|ref|YP_653511.1| transcriptional regulator HU subunit alpha [Yersinia pestis
Antiqua]
gi|108810400|ref|YP_646167.1| transcriptional regulator HU subunit alpha [Yersinia pestis
Nepal516]
gi|145600976|ref|YP_001165052.1| transcriptional regulator HU subunit alpha [Yersinia pestis
Pestoides F]
gi|153947801|ref|YP_001402797.1| transcriptional regulator HU subunit alpha [Yersinia
pseudotuberculosis IP 31758]
gi|153997235|ref|ZP_02022342.1| DNA-binding protein HU-alpha [Yersinia pestis CA88-4125]
gi|162418414|ref|YP_001605067.1| transcriptional regulator HU subunit alpha [Yersinia pestis
Angola]
gi|165928324|ref|ZP_02224156.1| DNA-binding protein HU-alpha [Yersinia pestis biovar Orientalis
str. F1991016]
gi|165938152|ref|ZP_02226711.1| DNA-binding protein HU-alpha [Yersinia pestis biovar Orientalis
str. IP275]
gi|166012045|ref|ZP_02232943.1| DNA-binding protein HU-alpha [Yersinia pestis biovar Antiqua str.
E1979001]
gi|166214410|ref|ZP_02240445.1| DNA-binding protein HU-alpha [Yersinia pestis biovar Antiqua str.
B42003004]
gi|167402421|ref|ZP_02307881.1| DNA-binding protein HU-alpha [Yersinia pestis biovar Antiqua str.
UG05-0454]
gi|167422943|ref|ZP_02314696.1| DNA-binding protein HU-alpha [Yersinia pestis biovar Orientalis
str. MG05-1020]
gi|167426821|ref|ZP_02318574.1| DNA-binding protein HU-alpha [Yersinia pestis biovar Mediaevalis
str. K1973002]
gi|170022612|ref|YP_001719117.1| transcriptional regulator HU subunit alpha [Yersinia
pseudotuberculosis YPIII]
gi|186893654|ref|YP_001870766.1| transcriptional regulator HU subunit alpha [Yersinia
pseudotuberculosis PB1/+]
gi|218930736|ref|YP_002348611.1| transcriptional regulator HU subunit alpha [Yersinia pestis CO92]
gi|229837478|ref|ZP_04457640.1| HU, DNA-binding transcriptional regulator, alpha subunit
[Yersinia pestis Pestoides A]
gi|229839413|ref|ZP_04459572.1| HU, DNA-binding transcriptional regulator, alpha subunit
[Yersinia pestis biovar Orientalis str. PEXU2]
gi|229899975|ref|ZP_04515115.1| HU, DNA-binding transcriptional regulator, alpha subunit
[Yersinia pestis biovar Orientalis str. India 195]
gi|229900576|ref|ZP_04515702.1| HU, DNA-binding transcriptional regulator, alpha subunit
[Yersinia pestis Nepal516]
gi|270488931|ref|ZP_06206005.1| DNA-binding protein HU [Yersinia pestis KIM D27]
gi|21957198|gb|AAM84088.1|AE013651_1 DNA-binding protein HU-alpha (HU-2) [Yersinia pestis KIM 10]
gi|45437714|gb|AAS63264.1| DNA-binding protein HU-alpha [Yersinia pestis biovar Microtus
str. 91001]
gi|51587934|emb|CAH19537.1| DNA-binding protein HU-alpha [Yersinia pseudotuberculosis IP
32953]
gi|108774048|gb|ABG16567.1| bacterial nucleoid protein HU alpha subunit [Yersinia pestis
Nepal516]
gi|108781508|gb|ABG15566.1| bacterial nucleoid protein HU alpha subunit [Yersinia pestis
Antiqua]
gi|115349347|emb|CAL22318.1| DNA-binding protein HU-alpha [Yersinia pestis CO92]
gi|145212672|gb|ABP42079.1| bacterial nucleoid protein HU alpha subunit [Yersinia pestis
Pestoides F]
gi|149289343|gb|EDM39422.1| DNA-binding protein HU-alpha [Yersinia pestis CA88-4125]
gi|152959296|gb|ABS46757.1| DNA-binding protein HU-alpha [Yersinia pseudotuberculosis IP
31758]
gi|162351229|gb|ABX85177.1| DNA-binding protein HU-alpha [Yersinia pestis Angola]
gi|165913813|gb|EDR32431.1| DNA-binding protein HU-alpha [Yersinia pestis biovar Orientalis
str. IP275]
gi|165919663|gb|EDR36996.1| DNA-binding protein HU-alpha [Yersinia pestis biovar Orientalis
str. F1991016]
gi|165989040|gb|EDR41341.1| DNA-binding protein HU-alpha [Yersinia pestis biovar Antiqua str.
E1979001]
gi|166204414|gb|EDR48894.1| DNA-binding protein HU-alpha [Yersinia pestis biovar Antiqua str.
B42003004]
gi|166957154|gb|EDR55175.1| DNA-binding protein HU-alpha [Yersinia pestis biovar Orientalis
str. MG05-1020]
gi|167048201|gb|EDR59609.1| DNA-binding protein HU-alpha [Yersinia pestis biovar Antiqua str.
UG05-0454]
gi|167054203|gb|EDR64028.1| DNA-binding protein HU-alpha [Yersinia pestis biovar Mediaevalis
str. K1973002]
gi|169749146|gb|ACA66664.1| histone family protein DNA-binding protein [Yersinia
pseudotuberculosis YPIII]
gi|186696680|gb|ACC87309.1| histone family protein DNA-binding protein [Yersinia
pseudotuberculosis PB1/+]
gi|229682396|gb|EEO78486.1| HU, DNA-binding transcriptional regulator, alpha subunit
[Yersinia pestis Nepal516]
gi|229686960|gb|EEO79036.1| HU, DNA-binding transcriptional regulator, alpha subunit
[Yersinia pestis biovar Orientalis str. India 195]
gi|229695779|gb|EEO85826.1| HU, DNA-binding transcriptional regulator, alpha subunit
[Yersinia pestis biovar Orientalis str. PEXU2]
gi|229704166|gb|EEO91177.1| HU, DNA-binding transcriptional regulator, alpha subunit
[Yersinia pestis Pestoides A]
gi|270337435|gb|EFA48212.1| DNA-binding protein HU [Yersinia pestis KIM D27]
gi|320013669|gb|ADV97240.1| HU, DNA-binding transcriptional regulator, alpha subunit
[Yersinia pestis biovar Medievalis str. Harbin 35]
Length = 91
Score = 92.1 bits (228), Expect = 2e-17, Method: Composition-based stats.
Identities = 32/92 (34%), Positives = 46/92 (50%), Gaps = 1/92 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI IA K L+ + + L +T++L G V++ GFG+F V R R
Sbjct: 1 MNKTQLIDVIADK-ADLSKVQAKAALESTLAAITESLKEGDPVQLVGFGTFKVNHRNERT 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P K I + VP F +GK LK+ + S
Sbjct: 60 GRNPQTGKEIKIAAANVPAFVSGKALKDAVKS 91
>gi|299144441|ref|ZP_07037521.1| DNA-binding protein HU [Peptoniphilus sp. oral taxon 386 str.
F0131]
gi|298518926|gb|EFI42665.1| DNA-binding protein HU [Peptoniphilus sp. oral taxon 386 str.
F0131]
Length = 92
Score = 92.1 bits (228), Expect = 2e-17, Method: Composition-based stats.
Identities = 39/93 (41%), Positives = 57/93 (61%), Gaps = 2/93 (2%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS L+ +IA+K+ L +D E +N L + +ALA G +V++ GFG+F VR+R AR
Sbjct: 1 MNKSELVASIAQKS-NLTKKDAEMALNGFLATVEEALAGGEKVQLVGFGTFEVRERKARE 59
Query: 61 ARAPL-AQKVISVEEKMVPFFRAGKNLKERLNS 92
R P +++I + P FRAGK LKE +N
Sbjct: 60 GRNPRDPKEIIKIPASKAPVFRAGKALKEVVNK 92
>gi|251791422|ref|YP_003006143.1| transcriptional regulator HU subunit alpha [Dickeya zeae Ech1591]
gi|271498813|ref|YP_003331838.1| histone family protein DNA-binding protein [Dickeya dadantii
Ech586]
gi|307129002|ref|YP_003881018.1| HU, DNA-binding transcriptional regulator, subunit alpha [Dickeya
dadantii 3937]
gi|247540043|gb|ACT08664.1| histone family protein DNA-binding protein [Dickeya zeae Ech1591]
gi|270342368|gb|ACZ75133.1| histone family protein DNA-binding protein [Dickeya dadantii
Ech586]
gi|306526531|gb|ADM96461.1| HU, DNA-binding transcriptional regulator, alpha subunit [Dickeya
dadantii 3937]
Length = 90
Score = 92.1 bits (228), Expect = 2e-17, Method: Composition-based stats.
Identities = 31/91 (34%), Positives = 45/91 (49%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI IA K L+ + + L +T++L G V++ GFG+F V R R
Sbjct: 1 MNKTQLIDVIADK-ADLSKTQAKAALEATLAAITESLKEGDAVQLVGFGTFKVNHRNERT 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P K I + VP F +GK LK+ +
Sbjct: 60 GRNPQTGKEIKIAAANVPAFVSGKALKDAVK 90
>gi|161524946|ref|YP_001579958.1| integration host factor subunit alpha [Burkholderia multivorans
ATCC 17616]
gi|160342375|gb|ABX15461.1| integration host factor, alpha subunit [Burkholderia multivorans
ATCC 17616]
Length = 136
Score = 92.1 bits (228), Expect = 2e-17, Method: Composition-based stats.
Identities = 25/91 (27%), Positives = 44/91 (48%), Gaps = 1/91 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ L + + LN ++ + +V E + AL NG V++ GFG+F +R + R
Sbjct: 39 TKAELAELLFD-SVGLNKREAKDMVEAFFEVIRDALENGESVKLSGFGNFQLRDKPQRPG 97
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P + I + + V F A + LK + +
Sbjct: 98 RNPKTGEAIPIAARRVVTFHASQKLKALVEN 128
>gi|332141057|ref|YP_004426795.1| integration host factor subunit alpha [Alteromonas macleodii str.
'Deep ecotype']
gi|226707368|sp|B4RS41|IHFA_ALTMD RecName: Full=Integration host factor subunit alpha;
Short=IHF-alpha
gi|327551079|gb|AEA97797.1| integration host factor subunit alpha [Alteromonas macleodii str.
'Deep ecotype']
Length = 99
Score = 92.1 bits (228), Expect = 2e-17, Method: Composition-based stats.
Identities = 27/93 (29%), Positives = 52/93 (55%), Gaps = 1/93 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ + + +K +N +D + +V + EE+ AL +G +V++ GFG+F +R + R
Sbjct: 4 TKAEMAEHLFEKL-GINKRDAKDLVELFFEEIKGALESGEQVKLSGFGNFDLRDKNERPG 62
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLNSPD 94
R P + I ++ + V FR G+ LK R+ + +
Sbjct: 63 RNPKTGEDIPIKARRVVTFRPGQKLKSRVENSE 95
>gi|229077218|ref|ZP_04209912.1| DNA-binding protein HU [Bacillus cereus Rock4-18]
gi|229119652|ref|ZP_04248924.1| DNA-binding protein HU [Bacillus cereus Rock1-3]
gi|228663818|gb|EEL19387.1| DNA-binding protein HU [Bacillus cereus Rock1-3]
gi|228706049|gb|EEL58344.1| DNA-binding protein HU [Bacillus cereus Rock4-18]
Length = 93
Score = 92.1 bits (228), Expect = 2e-17, Method: Composition-based stats.
Identities = 34/91 (37%), Positives = 51/91 (56%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI +A K +L +D +L+ +T LAN +V+I GFG+F VR+R+AR
Sbjct: 4 MNKTELIKVVADK-AELTQKDAATATQAVLDAITNTLANEEKVQILGFGTFEVRERSART 62
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + + + P F+AGK LKE +
Sbjct: 63 GRNPQTGEEMQIAASKAPAFKAGKELKEAVK 93
>gi|160900042|ref|YP_001565624.1| integration host factor subunit alpha [Delftia acidovorans SPH-1]
gi|226707373|sp|A9C3C8|IHFA_DELAS RecName: Full=Integration host factor subunit alpha;
Short=IHF-alpha
gi|160365626|gb|ABX37239.1| integration host factor, alpha subunit [Delftia acidovorans SPH-1]
Length = 110
Score = 92.1 bits (228), Expect = 2e-17, Method: Composition-based stats.
Identities = 27/89 (30%), Positives = 49/89 (55%), Gaps = 1/89 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ L + + LN ++ +++V+ E ++Q+L G V++ GFG+F +R +A R
Sbjct: 14 TKAQLADLLFDEI-GLNKRESKEMVDAFFELISQSLVTGEDVKLSGFGNFQIRTKAPRPG 72
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P + I +E + V F A LKE++
Sbjct: 73 RNPRTGEAIPIEARRVVTFHASSKLKEQI 101
>gi|291615778|ref|YP_003518520.1| HupA [Pantoea ananatis LMG 20103]
gi|329296840|ref|ZP_08254176.1| transcriptional regulator HU subunit alpha [Plautia stali
symbiont]
gi|291150808|gb|ADD75392.1| HupA [Pantoea ananatis LMG 20103]
gi|327396044|dbj|BAK13466.1| DNA-binding protein HU-alpha HupA [Pantoea ananatis AJ13355]
Length = 90
Score = 92.1 bits (228), Expect = 2e-17, Method: Composition-based stats.
Identities = 32/91 (35%), Positives = 47/91 (51%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI IA+K L+ + + L +T++L G V++ GFG+F V RA R
Sbjct: 1 MNKTQLIDVIAEK-ADLSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERT 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P K I + VP F +GK LK+ +
Sbjct: 60 GRNPQTGKEIKIAAANVPAFVSGKALKDAVK 90
>gi|87122323|ref|ZP_01078205.1| Integration host factor alpha subunit [Marinomonas sp. MED121]
gi|86162466|gb|EAQ63749.1| Integration host factor alpha subunit [Marinomonas sp. MED121]
Length = 98
Score = 92.1 bits (228), Expect = 2e-17, Method: Composition-based stats.
Identities = 23/91 (25%), Positives = 48/91 (52%), Gaps = 1/91 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ + + + L+ +D + +V + + + L G +V++ GFG+F VR+++ R
Sbjct: 5 TKADIAENLVDE-VGLSKKDSKDLVESFFDVIRETLIQGEQVKLSGFGNFEVREKSQRPG 63
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P + I + + V FR G+ LK ++ +
Sbjct: 64 RNPKTGEEIPITARTVVTFRPGQKLKSKVEN 94
>gi|89074399|ref|ZP_01160881.1| integration host factor alpha subunit [Photobacterium sp. SKA34]
gi|90579644|ref|ZP_01235453.1| integration host factor alpha subunit [Vibrio angustum S14]
gi|89049886|gb|EAR55427.1| integration host factor alpha subunit [Photobacterium sp. SKA34]
gi|90439218|gb|EAS64400.1| integration host factor alpha subunit [Vibrio angustum S14]
Length = 98
Score = 92.1 bits (228), Expect = 3e-17, Method: Composition-based stats.
Identities = 29/89 (32%), Positives = 49/89 (55%), Gaps = 1/89 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ L + + N L+ +D + V + EE+ +AL NG +V++ GFG+F +R + R
Sbjct: 4 TKADLAENLFE-NVGLSKRDAKDTVEVFFEEVRKALENGEQVKLSGFGNFDLRDKNERPG 62
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P + I + + V FR G+ LK R+
Sbjct: 63 RNPKTGEDIPISARRVVTFRPGQKLKARV 91
>gi|30995375|ref|NP_438591.2| DNA-binding protein HU-alpha [Haemophilus influenzae Rd KW20]
gi|145628799|ref|ZP_01784599.1| DNA-binding protein HU [Haemophilus influenzae 22.1-21]
gi|145630394|ref|ZP_01786175.1| NADH pyrophosphatase [Haemophilus influenzae R3021]
gi|145632675|ref|ZP_01788409.1| DNA-binding protein HU [Haemophilus influenzae 3655]
gi|145634573|ref|ZP_01790282.1| NADH pyrophosphatase [Haemophilus influenzae PittAA]
gi|145636301|ref|ZP_01791970.1| NADH pyrophosphatase [Haemophilus influenzae PittHH]
gi|145638660|ref|ZP_01794269.1| NADH pyrophosphatase [Haemophilus influenzae PittII]
gi|145640395|ref|ZP_01795979.1| DNA-binding protein HU [Haemophilus influenzae R3021]
gi|148825290|ref|YP_001290043.1| NADH pyrophosphatase [Haemophilus influenzae PittEE]
gi|148827627|ref|YP_001292380.1| DNA-binding protein HU [Haemophilus influenzae PittGG]
gi|229844410|ref|ZP_04464550.1| DNA-binding protein HU [Haemophilus influenzae 6P18H1]
gi|229846516|ref|ZP_04466624.1| DNA-binding protein HU [Haemophilus influenzae 7P49H1]
gi|319775643|ref|YP_004138131.1| DNA-binding protein HU [Haemophilus influenzae F3047]
gi|1169231|sp|P43722|DBH_HAEIN RecName: Full=DNA-binding protein HU
gi|144979269|gb|EDJ88955.1| DNA-binding protein HU [Haemophilus influenzae 22.1-21]
gi|144984129|gb|EDJ91566.1| NADH pyrophosphatase [Haemophilus influenzae R3021]
gi|144986870|gb|EDJ93422.1| DNA-binding protein HU [Haemophilus influenzae 3655]
gi|145268118|gb|EDK08113.1| NADH pyrophosphatase [Haemophilus influenzae PittAA]
gi|145270466|gb|EDK10400.1| NADH pyrophosphatase [Haemophilus influenzae PittHH]
gi|145272255|gb|EDK12163.1| NADH pyrophosphatase [Haemophilus influenzae PittII]
gi|145274981|gb|EDK14843.1| DNA-binding protein HU [Haemophilus influenzae 22.4-21]
gi|148715450|gb|ABQ97660.1| NADH pyrophosphatase [Haemophilus influenzae PittEE]
gi|148718869|gb|ABQ99996.1| DNA-binding protein HU [Haemophilus influenzae PittGG]
gi|229810609|gb|EEP46327.1| DNA-binding protein HU [Haemophilus influenzae 7P49H1]
gi|229812659|gb|EEP48348.1| DNA-binding protein HU [Haemophilus influenzae 6P18H1]
gi|301169130|emb|CBW28727.1| HU, DNA-binding transcriptional regulator, alpha subunit
[Haemophilus influenzae 10810]
gi|309750154|gb|ADO80138.1| DNA-binding protein HU-alpha [Haemophilus influenzae R2866]
gi|317450234|emb|CBY86450.1| DNA-binding protein HU [Haemophilus influenzae F3047]
Length = 90
Score = 91.8 bits (227), Expect = 3e-17, Method: Composition-based stats.
Identities = 32/91 (35%), Positives = 48/91 (52%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI IA +LN + + + L+ +T +L G V++ GFG+F V +RAAR
Sbjct: 1 MNKTDLIDAIANA-AELNKKQAKAALEATLDAITASLKEGEPVQLIGFGTFKVNERAART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P I + VP F +GK LK+ +
Sbjct: 60 GRNPQTGAEIQIAASKVPAFVSGKALKDAIK 90
>gi|328543549|ref|YP_004303658.1| integration host factor subunit alpha [polymorphum gilvum
SL003B-26A1]
gi|326413293|gb|ADZ70356.1| Integration host factor subunit alpha [Polymorphum gilvum
SL003B-26A1]
Length = 104
Score = 91.8 bits (227), Expect = 3e-17, Method: Composition-based stats.
Identities = 24/92 (26%), Positives = 47/92 (51%), Gaps = 1/92 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
+ ++ L + +K L+ + ++V +L E++ L G V++ FGSF VR + R+
Sbjct: 6 ITRADLCEAVYQK-VGLSRTESSELVERVLSEISDCLVTGESVKLSSFGSFVVRSKGERI 64
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P + + + + V F+ LK+R+N
Sbjct: 65 GRNPKTGEEVPISPRRVMVFKPSNILKQRINE 96
>gi|134295553|ref|YP_001119288.1| integration host factor subunit alpha [Burkholderia vietnamiensis
G4]
gi|134138710|gb|ABO54453.1| integration host factor, alpha subunit [Burkholderia vietnamiensis
G4]
Length = 128
Score = 91.8 bits (227), Expect = 3e-17, Method: Composition-based stats.
Identities = 25/91 (27%), Positives = 44/91 (48%), Gaps = 1/91 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ L + + LN ++ + +V E + AL NG V++ GFG+F +R + R
Sbjct: 36 TKAELAELLFD-SVGLNKREAKDMVEAFFEVIRDALENGESVKLSGFGNFQLRDKPQRPG 94
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P + I + + V F A + LK + +
Sbjct: 95 RNPKTGEAIPIAARRVVTFHASQKLKALVEN 125
>gi|172036192|ref|YP_001802693.1| putative histone-like DNA-binding protein [Cyanothece sp. ATCC
51142]
gi|171697646|gb|ACB50627.1| putative histone-like DNA-binding protein [Cyanothece sp. ATCC
51142]
Length = 93
Score = 91.8 bits (227), Expect = 3e-17, Method: Composition-based stats.
Identities = 29/90 (32%), Positives = 47/90 (52%), Gaps = 1/90 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K L+ IA K L ++ I++ L + + + +A+G +V + GFG+F R R R
Sbjct: 1 MNKEELVNMIAAKTR-LTKKETSHILDALTDTIMETVADGDKVVLVGFGTFEPRDRKERK 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
P + I++ VP F AGK KE++
Sbjct: 60 GMNPQTGQPITIPATTVPAFSAGKLFKEKV 89
>gi|121609650|ref|YP_997457.1| histone family protein DNA-binding protein [Verminephrobacter
eiseniae EF01-2]
gi|121554290|gb|ABM58439.1| histone family protein DNA-binding protein [Verminephrobacter
eiseniae EF01-2]
Length = 105
Score = 91.8 bits (227), Expect = 3e-17, Method: Composition-based stats.
Identities = 33/90 (36%), Positives = 48/90 (53%), Gaps = 1/90 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ LI I+ N ++ + + +E + + L GG V + GFG+F+V KRAAR
Sbjct: 17 NKTELIEYISD-NADISKAAAARALESTIEAVKKTLKKGGTVSLVGFGTFAVGKRAARTG 75
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P I ++ VP FR GK LK+ LN
Sbjct: 76 RNPRTGSAIKIKAAKVPKFRPGKALKDALN 105
>gi|17231427|ref|NP_487975.1| DNA binding protein HU [Nostoc sp. PCC 7120]
gi|75907988|ref|YP_322284.1| nucleoid protein Hbs [Anabaena variabilis ATCC 29413]
gi|186685101|ref|YP_001868297.1| histone family protein DNA-binding protein [Nostoc punctiforme
PCC 73102]
gi|2506517|sp|P05514|DBH_ANASP RecName: Full=DNA-binding protein HU
gi|31615985|pdb|1P51|A Chain A, Anabaena Hu-Dna Cocrystal Structure (Ahu6)
gi|31615986|pdb|1P51|B Chain B, Anabaena Hu-Dna Cocrystal Structure (Ahu6)
gi|31615987|pdb|1P51|C Chain C, Anabaena Hu-Dna Cocrystal Structure (Ahu6)
gi|31615988|pdb|1P51|D Chain D, Anabaena Hu-Dna Cocrystal Structure (Ahu6)
gi|31615997|pdb|1P71|A Chain A, Anabaena Hu-Dna Corcrystal Structure (Tr3)
gi|31615998|pdb|1P71|B Chain B, Anabaena Hu-Dna Corcrystal Structure (Tr3)
gi|31616001|pdb|1P78|A Chain A, Anabaena Hu-Dna Cocrystal Structure (Ahu2)
gi|31616002|pdb|1P78|B Chain B, Anabaena Hu-Dna Cocrystal Structure (Ahu2)
gi|1408581|gb|AAB06445.1|AAB06445 HU protein [Nostoc sp. PCC 7120]
gi|998920|gb|AAB34352.1| HU [Anabaena]
gi|17133069|dbj|BAB75634.1| DNA binding protein HU [Nostoc sp. PCC 7120]
gi|75701713|gb|ABA21389.1| bacterial nucleoid protein Hbs [Anabaena variabilis ATCC 29413]
gi|186467553|gb|ACC83354.1| histone family protein DNA-binding protein [Nostoc punctiforme
PCC 73102]
Length = 94
Score = 91.8 bits (227), Expect = 3e-17, Method: Composition-based stats.
Identities = 28/90 (31%), Positives = 50/90 (55%), Gaps = 1/90 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K L+ +A+K + + + ++ LE + +A+++G +V + GFGSF R+R AR
Sbjct: 1 MNKGELVDAVAEK-ASVTKKQADAVLTAALETIIEAVSSGDKVTLVGFGSFESRERKARE 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P + + + VP F AGK +E++
Sbjct: 60 GRNPKTNEKMEIPATRVPAFSAGKLFREKV 89
>gi|291518256|emb|CBK73477.1| Bacterial nucleoid DNA-binding protein [Butyrivibrio fibrisolvens
16/4]
Length = 90
Score = 91.8 bits (227), Expect = 3e-17, Method: Composition-based stats.
Identities = 32/91 (35%), Positives = 49/91 (53%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ L+ IA K ++ +D E V E + + L G ++++ GFG+F V KRAAR
Sbjct: 1 MNKTELVAAIASK-ANISKKDAEASVKAFTEVVAEELKKGEKIQLVGFGTFEVSKRAART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + + P F+AGK LK+ +N
Sbjct: 60 GRNPQTGAEMKIPASKAPKFKAGKALKDSIN 90
>gi|317152780|ref|YP_004120828.1| histone family protein DNA-binding protein [Desulfovibrio
aespoeensis Aspo-2]
gi|316943031|gb|ADU62082.1| histone family protein DNA-binding protein [Desulfovibrio
aespoeensis Aspo-2]
Length = 90
Score = 91.8 bits (227), Expect = 3e-17, Method: Composition-based stats.
Identities = 33/91 (36%), Positives = 49/91 (53%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ L+ IA+KN + E +N +L+ + LA G ++ + GFG+FSV +R AR
Sbjct: 1 MTKAELVAKIAEKN-GTSKAQAEASMNAILDVIQGELAAGNKLTLTGFGTFSVSERKART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P K I + V F+ GK LKE +
Sbjct: 60 GRNPRTGKEIKIPACKVAQFKPGKVLKEAVK 90
>gi|226954296|ref|ZP_03824760.1| integration host factor (IHF), alpha subunit, DNA-binding protein
[Acinetobacter sp. ATCC 27244]
gi|294649378|ref|ZP_06726809.1| integration host factor subunit alpha [Acinetobacter haemolyticus
ATCC 19194]
gi|226834967|gb|EEH67350.1| integration host factor (IHF), alpha subunit, DNA-binding protein
[Acinetobacter sp. ATCC 27244]
gi|292824748|gb|EFF83520.1| integration host factor subunit alpha [Acinetobacter haemolyticus
ATCC 19194]
Length = 98
Score = 91.8 bits (227), Expect = 3e-17, Method: Composition-based stats.
Identities = 25/92 (27%), Positives = 54/92 (58%), Gaps = 1/92 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ + +++ LN ++ +++V + +E++QAL +G +V++ GFG+F +R + R
Sbjct: 5 TKADMADHLSE-LTSLNRREAKQMVELFFDEISQALISGEQVKLSGFGNFELRDKRERPG 63
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLNSP 93
R P + I + + V FRAG+ ++R+ +
Sbjct: 64 RNPKTGEEIPISARRVVTFRAGQKFRQRVGNE 95
>gi|186474390|ref|YP_001863361.1| histone family protein DNA-binding protein [Burkholderia phymatum
STM815]
gi|184198349|gb|ACC76311.1| histone family protein DNA-binding protein [Burkholderia phymatum
STM815]
Length = 92
Score = 91.8 bits (227), Expect = 3e-17, Method: Composition-based stats.
Identities = 28/92 (30%), Positives = 45/92 (48%), Gaps = 1/92 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K LI +A + + ++ ++E +T A+ G V++ GFGSFS RA R
Sbjct: 1 MNKQELIDAVAA-TTGESKASTGETIDAIIETVTAAVTRGETVQLVGFGSFSTGARAERS 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P + I++ F AGK K+ +N+
Sbjct: 60 GRNPSTGETITIPAAKTVKFSAGKAFKDVVNA 91
>gi|188532334|ref|YP_001906131.1| transcriptional regulator HU subunit alpha [Erwinia tasmaniensis
Et1/99]
gi|292486747|ref|YP_003529617.1| DNA-binding protein HU-alpha [Erwinia amylovora CFBP1430]
gi|188027376|emb|CAO95223.1| DNA-binding protein HU-alpha [Erwinia tasmaniensis Et1/99]
gi|291552164|emb|CBA19201.1| DNA-binding protein HU-alpha [Erwinia amylovora CFBP1430]
gi|312170813|emb|CBX79074.1| DNA-binding protein HU-alpha [Erwinia amylovora ATCC BAA-2158]
Length = 90
Score = 91.8 bits (227), Expect = 3e-17, Method: Composition-based stats.
Identities = 32/91 (35%), Positives = 46/91 (50%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI IA K L+ + + L +T++L G V++ GFG+F V RA R
Sbjct: 1 MNKTQLIDVIADK-ADLSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERT 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P K I + VP F +GK LK+ +
Sbjct: 60 GRNPQTGKEIKIAAANVPAFVSGKALKDAVK 90
>gi|170701126|ref|ZP_02892100.1| integration host factor, alpha subunit [Burkholderia ambifaria
IOP40-10]
gi|171318448|ref|ZP_02907603.1| integration host factor, alpha subunit [Burkholderia ambifaria
MEX-5]
gi|170133948|gb|EDT02302.1| integration host factor, alpha subunit [Burkholderia ambifaria
IOP40-10]
gi|171096362|gb|EDT41264.1| integration host factor, alpha subunit [Burkholderia ambifaria
MEX-5]
Length = 128
Score = 91.8 bits (227), Expect = 3e-17, Method: Composition-based stats.
Identities = 25/91 (27%), Positives = 44/91 (48%), Gaps = 1/91 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ L + + LN ++ + +V E + AL NG V++ GFG+F +R + R
Sbjct: 36 TKAELAELLFD-SVGLNKREAKDMVEAFFEVIRDALENGESVKLSGFGNFQLRDKPQRPG 94
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P + I + + V F A + LK + +
Sbjct: 95 RNPKTGEAIPIAARRVVTFHASQKLKALVEN 125
>gi|206972956|ref|ZP_03233878.1| DNA-binding protein HU 1 [Bacillus cereus AH1134]
gi|206731840|gb|EDZ49040.1| DNA-binding protein HU 1 [Bacillus cereus AH1134]
Length = 90
Score = 91.8 bits (227), Expect = 3e-17, Method: Composition-based stats.
Identities = 35/91 (38%), Positives = 52/91 (57%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ L +A+K +L +D LL+ +T ALA G +V+I GFG+F VR+R+AR
Sbjct: 1 MNKTKLTKVVAEK-AELTQKDAAAATQALLDTITNALATGEKVQILGFGTFEVRERSART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + + + P F+AGK LKE +
Sbjct: 60 GRNPQTGEEMQIAASKAPAFKAGKELKEAVK 90
>gi|78066092|ref|YP_368861.1| integration host factor subunit alpha [Burkholderia sp. 383]
gi|107022554|ref|YP_620881.1| integration host factor subunit alpha [Burkholderia cenocepacia AU
1054]
gi|116689503|ref|YP_835126.1| integration host factor subunit alpha [Burkholderia cenocepacia
HI2424]
gi|170732808|ref|YP_001764755.1| integration host factor subunit alpha [Burkholderia cenocepacia
MC0-3]
gi|206559853|ref|YP_002230617.1| integration host factor subunit alpha [Burkholderia cenocepacia
J2315]
gi|254245604|ref|ZP_04938925.1| Integration host factor alpha subunit [Burkholderia cenocepacia
PC184]
gi|254252552|ref|ZP_04945870.1| Integration host factor alpha subunit [Burkholderia dolosa AUO158]
gi|77966837|gb|ABB08217.1| Integration host factor, alpha subunit [Burkholderia sp. 383]
gi|105892743|gb|ABF75908.1| integration host factor, alpha subunit [Burkholderia cenocepacia AU
1054]
gi|116647592|gb|ABK08233.1| integration host factor, alpha subunit [Burkholderia cenocepacia
HI2424]
gi|124870380|gb|EAY62096.1| Integration host factor alpha subunit [Burkholderia cenocepacia
PC184]
gi|124895161|gb|EAY69041.1| Integration host factor alpha subunit [Burkholderia dolosa AUO158]
gi|169816050|gb|ACA90633.1| integration host factor, alpha subunit [Burkholderia cenocepacia
MC0-3]
gi|198035894|emb|CAR51786.1| integration host factor alpha-subunit [Burkholderia cenocepacia
J2315]
Length = 131
Score = 91.8 bits (227), Expect = 3e-17, Method: Composition-based stats.
Identities = 25/91 (27%), Positives = 44/91 (48%), Gaps = 1/91 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ L + + LN ++ + +V E + AL NG V++ GFG+F +R + R
Sbjct: 39 TKAELAELLFD-SVGLNKREAKDMVEAFFEVIRDALENGESVKLSGFGNFQLRDKPQRPG 97
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P + I + + V F A + LK + +
Sbjct: 98 RNPKTGEAIPIAARRVVTFHASQKLKALVEN 128
>gi|291166397|gb|EFE28443.1| DNA-binding protein HU [Filifactor alocis ATCC 35896]
Length = 93
Score = 91.8 bits (227), Expect = 3e-17, Method: Composition-based stats.
Identities = 34/94 (36%), Positives = 53/94 (56%), Gaps = 2/94 (2%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ L+ +A+K L +D+E +N + + AL G +V++ GFGSF R+RA R
Sbjct: 1 MNKAELVTKMAEK-CNLTKKDMEVALNAFMSCVEDALVAGEKVQLVGFGSFETRERAERE 59
Query: 61 ARAPLAQKV-ISVEEKMVPFFRAGKNLKERLNSP 93
R P + + I + P F+AGK LKE++N
Sbjct: 60 GRNPRSPEEVIKIPASKAPVFKAGKGLKEKVNHK 93
>gi|317046455|ref|YP_004114103.1| histone family protein DNA-binding protein [Pantoea sp. At-9b]
gi|316948072|gb|ADU67547.1| histone family protein DNA-binding protein [Pantoea sp. At-9b]
Length = 90
Score = 91.8 bits (227), Expect = 3e-17, Method: Composition-based stats.
Identities = 32/91 (35%), Positives = 48/91 (52%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI IA+K L+ + + L +T++L +G V++ GFG+F V RA R
Sbjct: 1 MNKTQLIDVIAEK-ADLSKTQAKTALESTLAAITESLKDGDAVQLVGFGTFKVNHRAERT 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P K I + VP F +GK LK+ +
Sbjct: 60 GRNPQTGKEIKIAAANVPAFVSGKALKDAVK 90
>gi|189350306|ref|YP_001945934.1| integration host factor subunit alpha [Burkholderia multivorans
ATCC 17616]
gi|189334328|dbj|BAG43398.1| integration host factor alpha subunit [Burkholderia multivorans
ATCC 17616]
Length = 133
Score = 91.8 bits (227), Expect = 3e-17, Method: Composition-based stats.
Identities = 25/91 (27%), Positives = 44/91 (48%), Gaps = 1/91 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ L + + LN ++ + +V E + AL NG V++ GFG+F +R + R
Sbjct: 36 TKAELAELLFD-SVGLNKREAKDMVEAFFEVIRDALENGESVKLSGFGNFQLRDKPQRPG 94
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P + I + + V F A + LK + +
Sbjct: 95 RNPKTGEAIPIAARRVVTFHASQKLKALVEN 125
>gi|332294986|ref|YP_004436909.1| histone family protein DNA-binding protein [Thermodesulfobium
narugense DSM 14796]
gi|332178089|gb|AEE13778.1| histone family protein DNA-binding protein [Thermodesulfobium
narugense DSM 14796]
Length = 106
Score = 91.8 bits (227), Expect = 3e-17, Method: Composition-based stats.
Identities = 30/96 (31%), Positives = 51/96 (53%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI +A+K + +D +V + + + AL +V++ GFG+F VR+R R
Sbjct: 1 MRKTDLINAVAEKCKGMTKKDCTVVVEAVFDSIKDALKRNEKVQLIGFGTFEVRERKERK 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDST 96
R P +++ I + P F+AGK LKE + +
Sbjct: 61 GRNPRSKEEIVIPAMKTPGFKAGKALKEAVQPKKAE 96
>gi|254469379|ref|ZP_05082784.1| integration host factor, alpha subunit [Pseudovibrio sp. JE062]
gi|211961214|gb|EEA96409.1| integration host factor, alpha subunit [Pseudovibrio sp. JE062]
Length = 103
Score = 91.8 bits (227), Expect = 3e-17, Method: Composition-based stats.
Identities = 25/90 (27%), Positives = 48/90 (53%), Gaps = 1/90 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
++ L + +K L+ + ++V +L E++ +L NG V++ FGSF VR + R+
Sbjct: 7 TRADLCEAVYQK-VGLSRTESAELVEQVLAEISASLENGESVKLSSFGSFVVRSKGERIG 65
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + + + + V F+ LK+R+N
Sbjct: 66 RNPKTGEEVPISPRRVMVFKPSNVLKQRIN 95
>gi|319763191|ref|YP_004127128.1| integration host factor, alpha subunit [Alicycliphilus
denitrificans BC]
gi|330825385|ref|YP_004388688.1| integration host factor subunit alpha [Alicycliphilus denitrificans
K601]
gi|317117752|gb|ADV00241.1| integration host factor, alpha subunit [Alicycliphilus
denitrificans BC]
gi|329310757|gb|AEB85172.1| integration host factor, alpha subunit [Alicycliphilus
denitrificans K601]
Length = 117
Score = 91.8 bits (227), Expect = 3e-17, Method: Composition-based stats.
Identities = 26/89 (29%), Positives = 49/89 (55%), Gaps = 1/89 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ L + + + LN ++ + +V+ + + Q+L +G V++ GFG+F +R +A R
Sbjct: 23 TKAQLADLLFE-HIGLNKRESKDMVDAFFDLIVQSLVDGQDVKLSGFGNFQIRTKAPRPG 81
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P + I +E + V F A LKE++
Sbjct: 82 RNPRTGETIPIEARRVVTFHASSKLKEQI 110
>gi|255019929|ref|ZP_05292003.1| Integration host factor alpha subunit [Acidithiobacillus caldus
ATCC 51756]
gi|254970588|gb|EET28076.1| Integration host factor alpha subunit [Acidithiobacillus caldus
ATCC 51756]
Length = 99
Score = 91.8 bits (227), Expect = 3e-17, Method: Composition-based stats.
Identities = 24/97 (24%), Positives = 46/97 (47%), Gaps = 1/97 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ ++ + LN ++ + IV + + + LA G V++ GFG+F++R++ R
Sbjct: 4 TKAEIVDMLYD-TMGLNKREAKGIVESFFDSIRETLARGEEVKLSGFGNFTLREKNPRPG 62
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDSTLS 98
R P I++ + V F + LK +N S
Sbjct: 63 RNPKTGVEITITARRVVTFHPSQKLKAYVNGRSEQQS 99
>gi|121594958|ref|YP_986854.1| histone family protein DNA-binding protein [Acidovorax sp. JS42]
gi|222110394|ref|YP_002552658.1| histone family protein DNA-binding protein [Acidovorax ebreus
TPSY]
gi|120607038|gb|ABM42778.1| histone family protein DNA-binding protein [Acidovorax sp. JS42]
gi|221729838|gb|ACM32658.1| histone family protein DNA-binding protein [Acidovorax ebreus
TPSY]
Length = 90
Score = 91.8 bits (227), Expect = 3e-17, Method: Composition-based stats.
Identities = 35/91 (38%), Positives = 49/91 (53%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI IA N ++ + + +E + + L GG V + GFG+F+V KRAAR
Sbjct: 1 MNKTELIEHIAN-NADISKAAAARALESTIEAVKKTLKKGGTVSLVGFGTFAVGKRAART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P I ++ VP FR GK LK+ LN
Sbjct: 60 GRNPRTGATIKIKAAKVPKFRPGKALKDALN 90
>gi|94310111|ref|YP_583321.1| integration host factor subunit alpha [Cupriavidus metallidurans
CH34]
gi|93353963|gb|ABF08052.1| integration host factor, alpha subunit 1 (IHF-alpha 1) [Cupriavidus
metallidurans CH34]
Length = 136
Score = 91.8 bits (227), Expect = 3e-17, Method: Composition-based stats.
Identities = 24/89 (26%), Positives = 46/89 (51%), Gaps = 1/89 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ L + + LN ++ + +V + + +AL G V++ GFG+F +R +A R
Sbjct: 41 TKAELAEMLFDQ-VGLNKRESKDMVEAFFDVIREALERGDSVKLSGFGNFQLRDKAQRPG 99
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P ++I + + V F A + LK ++
Sbjct: 100 RNPKTGEIIPITARRVVTFHASQKLKAQV 128
>gi|307704962|ref|ZP_07641850.1| DNA-binding protein HU [Streptococcus mitis SK597]
gi|307621472|gb|EFO00521.1| DNA-binding protein HU [Streptococcus mitis SK597]
Length = 91
Score = 91.8 bits (227), Expect = 3e-17, Method: Composition-based stats.
Identities = 34/90 (37%), Positives = 50/90 (55%), Gaps = 1/90 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K LI +A+ +L +D V + +T LA G +V++ GFG+F VR+RAAR
Sbjct: 3 NKQDLIAKVAEAT-ELTKKDSAAAVEAVFSAVTDYLAAGEKVQLIGFGNFEVRERAARKG 61
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P K I++ VP F+AGK LK+ +
Sbjct: 62 RNPQTGKEITIAASKVPAFKAGKALKDAVK 91
>gi|298489847|ref|YP_003720024.1| histone family protein DNA-binding protein ['Nostoc azollae'
0708]
gi|298231765|gb|ADI62901.1| histone family protein DNA-binding protein ['Nostoc azollae'
0708]
Length = 94
Score = 91.8 bits (227), Expect = 3e-17, Method: Composition-based stats.
Identities = 29/90 (32%), Positives = 51/90 (56%), Gaps = 1/90 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K L+ +A+K + + + +++ +E + +A+A+G +V + GFGSF R+R AR
Sbjct: 1 MNKGELVDAVAEK-ASVTKKQADAVLSAAIETIIEAVASGDKVTLVGFGSFESRERKARE 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P + + + VP F AGK +ER+
Sbjct: 60 GRNPKTNEKMEIPATKVPAFSAGKLFRERV 89
>gi|153833703|ref|ZP_01986370.1| integration host factor, alpha subunit [Vibrio harveyi HY01]
gi|156974397|ref|YP_001445304.1| integration host factor subunit alpha [Vibrio harveyi ATCC
BAA-1116]
gi|269962174|ref|ZP_06176527.1| integration host factor, alpha subunit [Vibrio harveyi 1DA3]
gi|166918532|sp|A7MVH4|IHFA_VIBHB RecName: Full=Integration host factor subunit alpha;
Short=IHF-alpha
gi|148869982|gb|EDL68942.1| integration host factor, alpha subunit [Vibrio harveyi HY01]
gi|156525991|gb|ABU71077.1| hypothetical protein VIBHAR_02112 [Vibrio harveyi ATCC BAA-1116]
gi|269833005|gb|EEZ87111.1| integration host factor, alpha subunit [Vibrio harveyi 1DA3]
Length = 98
Score = 91.8 bits (227), Expect = 3e-17, Method: Composition-based stats.
Identities = 27/94 (28%), Positives = 50/94 (53%), Gaps = 1/94 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ L + K + +D ++ V + EE+ +AL +G +V++ GFG+F +R + R
Sbjct: 4 TKAELAENLFDKL-GFSKRDAKETVEVFFEEIRKALESGEQVKLSGFGNFDLRDKNERPG 62
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDS 95
R P + I + + V FR G+ LK R+ + +
Sbjct: 63 RNPKTGEDIPITARRVVTFRPGQKLKARVENLKA 96
>gi|150026047|ref|YP_001296873.1| histone-like DNA-binding protein HU-beta [Flavobacterium
psychrophilum JIP02/86]
gi|39653976|gb|AAR29587.1| Fp91 [Flavobacterium psychrophilum]
gi|149772588|emb|CAL44071.1| Histone-like bacterial DNA-binding protein HU-beta
[Flavobacterium psychrophilum JIP02/86]
Length = 91
Score = 91.8 bits (227), Expect = 3e-17, Method: Composition-based stats.
Identities = 31/92 (33%), Positives = 45/92 (48%), Gaps = 1/92 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI ++ + + + + L + + L GGRV + GFGS+SV RAAR
Sbjct: 1 MNKSDLIDAMSA-SAGITKAAAKLALESFLGNIEETLQKGGRVSLVGFGSWSVSNRAARD 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P I + K V F+AG L+ +N
Sbjct: 60 GRNPQTGATIKIAAKNVVKFKAGAELEIAVNK 91
>gi|82703454|ref|YP_413020.1| histone-like DNA-binding protein [Nitrosospira multiformis ATCC
25196]
gi|82411519|gb|ABB75628.1| bacterial nucleoid protein Hbs [Nitrosospira multiformis ATCC
25196]
Length = 90
Score = 91.8 bits (227), Expect = 3e-17, Method: Composition-based stats.
Identities = 35/91 (38%), Positives = 48/91 (52%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI IA K+ ++ ++ LE + AL G V + GFG+F V RAAR
Sbjct: 1 MNKAELIDAIA-KSSDISKASAGNALDGALEAIKAALKKGQSVTLVGFGTFKVGTRAART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P I++E VP F AGK LK+ +N
Sbjct: 60 GRNPRTGAAITIESTKVPKFIAGKALKDAVN 90
>gi|251782882|ref|YP_002997185.1| DNA-binding protein HU [Streptococcus dysgalactiae subsp.
equisimilis GGS_124]
gi|242391512|dbj|BAH81971.1| DNA-binding protein HU [Streptococcus dysgalactiae subsp.
equisimilis GGS_124]
gi|322412211|gb|EFY03119.1| DNA-binding protein HU [Streptococcus dysgalactiae subsp.
dysgalactiae ATCC 27957]
gi|323127685|gb|ADX24982.1| DNA-binding protein HU [Streptococcus dysgalactiae subsp.
equisimilis ATCC 12394]
Length = 91
Score = 91.8 bits (227), Expect = 3e-17, Method: Composition-based stats.
Identities = 32/90 (35%), Positives = 48/90 (53%), Gaps = 1/90 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K LI +A+ +L +D V+ + + LA G +V++ GFG+F VR+RAAR
Sbjct: 3 NKQDLIAKVAEAT-ELTKKDSAAAVDAVFSAIEAFLAEGEKVQLIGFGNFEVRERAARKG 61
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P I + VP F+AGK LK+ +
Sbjct: 62 RNPQTGAEIEIAASKVPAFKAGKALKDAVK 91
>gi|146309880|ref|YP_001174954.1| transcriptional regulator HU subunit alpha [Enterobacter sp. 638]
gi|261340912|ref|ZP_05968770.1| DNA-binding protein HU-beta [Enterobacter cancerogenus ATCC
35316]
gi|296100631|ref|YP_003610777.1| transcriptional regulator HU subunit alpha [Enterobacter cloacae
subsp. cloacae ATCC 13047]
gi|145316756|gb|ABP58903.1| bacterial nucleoid protein HU alpha subunit [Enterobacter sp.
638]
gi|288316967|gb|EFC55905.1| DNA-binding protein HU-beta [Enterobacter cancerogenus ATCC
35316]
gi|295055090|gb|ADF59828.1| transcriptional regulator HU subunit alpha [Enterobacter cloacae
subsp. cloacae ATCC 13047]
gi|295095112|emb|CBK84202.1| bacterial nucleoid protein HU alpha subunit [Enterobacter cloacae
subsp. cloacae NCTC 9394]
Length = 90
Score = 91.8 bits (227), Expect = 3e-17, Method: Composition-based stats.
Identities = 32/91 (35%), Positives = 46/91 (50%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI IA K L+ + + L +T++L G V++ GFG+F V RA R
Sbjct: 1 MNKTQLIDVIADK-ADLSKVQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERT 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P K I + VP F +GK LK+ +
Sbjct: 60 GRNPQTGKEIKIAAANVPAFVSGKALKDAVK 90
>gi|46579547|ref|YP_010355.1| DNA-binding protein HU subunit beta [Desulfovibrio vulgaris str.
Hildenborough]
gi|46448962|gb|AAS95614.1| DNA-binding protein HU, beta subunit [Desulfovibrio vulgaris str.
Hildenborough]
gi|311233363|gb|ADP86217.1| histone family protein DNA-binding protein [Desulfovibrio
vulgaris RCH1]
Length = 95
Score = 91.8 bits (227), Expect = 3e-17, Method: Composition-based stats.
Identities = 26/94 (27%), Positives = 47/94 (50%), Gaps = 4/94 (4%)
Query: 1 MIKSSLIGTIA---KKNP-KLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKR 56
M + L+ + ++ K+ +DVE+ +++ + L GG V + G +R
Sbjct: 1 MNRKELVSAVQNTLERTGCKITRRDVERTLDVFGDVAAAELLEGGDVPLPVLGKLRSVER 60
Query: 57 AARLARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
AAR R P + I++ + V F+AGK+L+E L
Sbjct: 61 AARAGRNPRTGESIAIPARRVVTFKAGKDLREAL 94
>gi|33602439|ref|NP_889999.1| integration host factor beta-subunit [Bordetella bronchiseptica
RB50]
gi|33576878|emb|CAE33958.1| integration host factor beta-subunit [Bordetella bronchiseptica
RB50]
Length = 110
Score = 91.8 bits (227), Expect = 3e-17, Method: Composition-based stats.
Identities = 38/82 (46%), Positives = 58/82 (70%)
Query: 10 IAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLARAPLAQKV 69
+A + P+L +D + V +L+ MTQALA+G R+EIRGFGSFS+ +R+ R+ R P + +
Sbjct: 1 MAARYPQLAARDTDYAVKTMLDAMTQALASGQRIEIRGFGSFSLSQRSPRIGRNPKSGEQ 60
Query: 70 ISVEEKMVPFFRAGKNLKERLN 91
+ V K VP F+AGK L+ER++
Sbjct: 61 VLVPGKQVPHFKAGKELRERVD 82
>gi|154490160|ref|ZP_02030421.1| hypothetical protein PARMER_00392 [Parabacteroides merdae ATCC
43184]
gi|154089052|gb|EDN88096.1| hypothetical protein PARMER_00392 [Parabacteroides merdae ATCC
43184]
Length = 96
Score = 91.8 bits (227), Expect = 3e-17, Method: Composition-based stats.
Identities = 25/96 (26%), Positives = 51/96 (53%), Gaps = 1/96 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI +A+++ L Q +K++ ++ +T+A+++ + + GFG+ R + RL
Sbjct: 1 MNKAELIEALAQRS-GLQKQKAKKLLEAYVDIVTEAMSHNEEIVLIGFGTLIPRPQTERL 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDST 96
AR P + + + F+ GK L + +N P+
Sbjct: 60 ARNPKTGTPVMIPARTTVKFKPGKYLLDAINKPEEK 95
>gi|317047874|ref|YP_004115522.1| integration host factor subunit alpha [Pantoea sp. At-9b]
gi|316949491|gb|ADU68966.1| integration host factor, alpha subunit [Pantoea sp. At-9b]
Length = 100
Score = 91.8 bits (227), Expect = 3e-17, Method: Composition-based stats.
Identities = 28/98 (28%), Positives = 54/98 (55%), Gaps = 1/98 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ + + +K L+ +D +++V + EE+ +AL NG +V++ GFG+F +R + R
Sbjct: 4 TKAEMSEYLFEKL-GLSKRDAKELVELFFEEVRRALENGEQVKLSGFGNFDLRDKNQRPG 62
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDSTLSN 99
R P + I + + V FR G+ LK R+ + ++
Sbjct: 63 RNPKTGEDIPITARRVVTFRPGQKLKSRVENATPKDAD 100
>gi|257092831|ref|YP_003166472.1| integration host factor subunit alpha [Candidatus Accumulibacter
phosphatis clade IIA str. UW-1]
gi|257045355|gb|ACV34543.1| integration host factor, alpha subunit [Candidatus Accumulibacter
phosphatis clade IIA str. UW-1]
Length = 100
Score = 91.8 bits (227), Expect = 3e-17, Method: Composition-based stats.
Identities = 26/89 (29%), Positives = 44/89 (49%), Gaps = 1/89 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ L + +K LN ++ + +V EE+ AL G V++ GFG+F +R + R
Sbjct: 4 TKAELADLLFEK-VGLNKREAKDMVEAFFEEIRNALERGDGVKLSGFGNFQLRDKPQRPG 62
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P + I + + V F A + LK +
Sbjct: 63 RNPKTGEEIPITARRVVTFHASQKLKGEV 91
>gi|312884548|ref|ZP_07744252.1| integration host factor subunit alpha [Vibrio caribbenthicus ATCC
BAA-2122]
gi|309367860|gb|EFP95408.1| integration host factor subunit alpha [Vibrio caribbenthicus ATCC
BAA-2122]
Length = 97
Score = 91.8 bits (227), Expect = 3e-17, Method: Composition-based stats.
Identities = 28/93 (30%), Positives = 50/93 (53%), Gaps = 1/93 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ L + +K + +D ++ V M EE+ +AL +G +V++ GFG+F +R + R
Sbjct: 4 TKADLAENLFEKL-GYSKRDAKETVEMFFEEIRKALESGEQVKLSGFGNFDLRDKNERPG 62
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLNSPD 94
R P + I + + V FR G+ LK R+ +
Sbjct: 63 RNPKTGEDIPISARRVVTFRPGQKLKARVENIK 95
>gi|299533562|ref|ZP_07046938.1| integration host factor subunit alpha [Comamonas testosteroni S44]
gi|298718468|gb|EFI59449.1| integration host factor subunit alpha [Comamonas testosteroni S44]
Length = 108
Score = 91.8 bits (227), Expect = 3e-17, Method: Composition-based stats.
Identities = 26/94 (27%), Positives = 48/94 (51%), Gaps = 1/94 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ L + + LN ++ + +V+ + ++Q L +G V++ GFG+F +R +A R
Sbjct: 14 TKAQLADLLFDEI-GLNKREAKDMVDAFFDLISQKLVDGEDVKLSGFGNFQIRTKAPRPG 72
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDS 95
R P ++I + + V F A LKE + S
Sbjct: 73 RNPRTGELIPIAARRVVTFHASSKLKELIQGESS 106
>gi|221197740|ref|ZP_03570786.1| integration host factor, alpha subunit [Burkholderia multivorans
CGD2M]
gi|221204702|ref|ZP_03577719.1| integration host factor, alpha subunit [Burkholderia multivorans
CGD2]
gi|221214897|ref|ZP_03587865.1| integration host factor, alpha subunit [Burkholderia multivorans
CGD1]
gi|221165124|gb|EED97602.1| integration host factor, alpha subunit [Burkholderia multivorans
CGD1]
gi|221175559|gb|EEE07989.1| integration host factor, alpha subunit [Burkholderia multivorans
CGD2]
gi|221181672|gb|EEE14073.1| integration host factor, alpha subunit [Burkholderia multivorans
CGD2M]
Length = 114
Score = 91.8 bits (227), Expect = 3e-17, Method: Composition-based stats.
Identities = 25/91 (27%), Positives = 44/91 (48%), Gaps = 1/91 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ L + + LN ++ + +V E + AL NG V++ GFG+F +R + R
Sbjct: 17 TKAELAELLFD-SVGLNKREAKDMVEAFFEVIRDALENGESVKLSGFGNFQLRDKPQRPG 75
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P + I + + V F A + LK + +
Sbjct: 76 RNPKTGEAIPIAARRVVTFHASQKLKALVEN 106
>gi|215778416|ref|YP_002261556.1| DNA-binding protein HU-alpha [Aliivibrio salmonicida LFI1238]
gi|208011461|emb|CAQ81925.1| DNA-binding protein HU-alpha [Aliivibrio salmonicida LFI1238]
Length = 91
Score = 91.8 bits (227), Expect = 3e-17, Method: Composition-based stats.
Identities = 34/91 (37%), Positives = 47/91 (51%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K L+ IA+ + L+ Q +N ++ +T AL G V + GFG+F V RAAR
Sbjct: 1 MNKKELVWHIAE-SADLSQQRATATLNATVDIITTALKEGDDVALVGFGTFKVNPRAARE 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P +I + F+AGK LKE LN
Sbjct: 60 GRNPKTGDMIQIAASNALVFKAGKALKETLN 90
>gi|332711135|ref|ZP_08431069.1| bacterial nucleoid protein Hbs [Lyngbya majuscula 3L]
gi|332350117|gb|EGJ29723.1| bacterial nucleoid protein Hbs [Lyngbya majuscula 3L]
Length = 94
Score = 91.8 bits (227), Expect = 3e-17, Method: Composition-based stats.
Identities = 29/90 (32%), Positives = 49/90 (54%), Gaps = 1/90 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K L+ +A+K + + + ++ +E + +A++ G +V + GFGSF R+R AR
Sbjct: 1 MNKGELVDKVAEK-ATVTKKQADAVLTATIETIMEAVSEGDKVTLVGFGSFESRERKARE 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P + + + VP F AGK KER+
Sbjct: 60 GRNPKTGEKMEIPATKVPAFSAGKVFKERV 89
>gi|218259892|ref|ZP_03475424.1| hypothetical protein PRABACTJOHN_01083 [Parabacteroides johnsonii
DSM 18315]
gi|218224857|gb|EEC97507.1| hypothetical protein PRABACTJOHN_01083 [Parabacteroides johnsonii
DSM 18315]
Length = 96
Score = 91.8 bits (227), Expect = 3e-17, Method: Composition-based stats.
Identities = 25/96 (26%), Positives = 50/96 (52%), Gaps = 1/96 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI +A+++ L Q +K++ ++ +T+A+++ + + GFG+ R + RL
Sbjct: 1 MNKAELIEALAQRS-GLQKQKAKKLLEAYVDIVTEAMSHNEEIVLVGFGTLIPRPQTERL 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDST 96
AR P + + + F+ GK L + +N P
Sbjct: 60 ARNPKTGTPVMIPARTTVKFKPGKYLLDAINKPGEK 95
>gi|119488961|ref|ZP_01621896.1| Histone-like DNA-binding protein [Lyngbya sp. PCC 8106]
gi|119454917|gb|EAW36060.1| Histone-like DNA-binding protein [Lyngbya sp. PCC 8106]
Length = 98
Score = 91.8 bits (227), Expect = 3e-17, Method: Composition-based stats.
Identities = 32/97 (32%), Positives = 48/97 (49%), Gaps = 1/97 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K L+ A K + + + IV+ + E + A+A G +V + GFGSF R R AR
Sbjct: 1 MNKEQLVQETAFK-AGVTKKQADAIVSAICESIMDAVAEGEKVTLVGFGSFEARHRKARE 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDSTL 97
R P + +++ E VP F AGK KE + +
Sbjct: 60 GRNPSTGQPMTIPETTVPAFSAGKAFKEMVAEESDEI 96
>gi|295678172|ref|YP_003606696.1| histone family protein DNA-binding protein [Burkholderia sp.
CCGE1002]
gi|295438015|gb|ADG17185.1| histone family protein DNA-binding protein [Burkholderia sp.
CCGE1002]
Length = 92
Score = 91.8 bits (227), Expect = 3e-17, Method: Composition-based stats.
Identities = 29/92 (31%), Positives = 46/92 (50%), Gaps = 1/92 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K LI +A + + + ++ LLE + ++++ G V++ GFGSF KRAAR
Sbjct: 1 MNKQELIDAVAGQT-GASKAQTGETLDTLLEVIKKSVSKGEAVQLIGFGSFGSGKRAART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P + I + F AGK K+ +N
Sbjct: 60 GRNPKTGETIKIPAAKTVKFTAGKAFKDAVNK 91
>gi|264679160|ref|YP_003279067.1| integration host factor, subunit alpha [Comamonas testosteroni
CNB-2]
gi|262209673|gb|ACY33771.1| integration host factor, alpha subunit [Comamonas testosteroni
CNB-2]
Length = 108
Score = 91.8 bits (227), Expect = 3e-17, Method: Composition-based stats.
Identities = 25/89 (28%), Positives = 46/89 (51%), Gaps = 1/89 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ L + + LN ++ + +V+ + ++Q L G V++ GFG+F +R +A R
Sbjct: 14 TKAQLADLLFDEI-GLNKREAKDMVDAFFDLISQKLVEGEDVKLSGFGNFQIRTKAPRPG 72
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P ++I + + V F A LKE +
Sbjct: 73 RNPRTGELIPIAARRVVTFHASSKLKELI 101
>gi|28869581|ref|NP_792200.1| integration host factor subunit alpha [Pseudomonas syringae pv.
tomato str. DC3000]
gi|66045408|ref|YP_235249.1| integration host factor subunit alpha [Pseudomonas syringae pv.
syringae B728a]
gi|70729487|ref|YP_259225.1| integration host factor subunit alpha [Pseudomonas fluorescens
Pf-5]
gi|71737728|ref|YP_274360.1| integration host factor subunit alpha [Pseudomonas syringae pv.
phaseolicola 1448A]
gi|77458164|ref|YP_347669.1| integration host factor subunit alpha [Pseudomonas fluorescens
Pf0-1]
gi|213970489|ref|ZP_03398616.1| integration host factor subunit alpha [Pseudomonas syringae pv.
tomato T1]
gi|229591573|ref|YP_002873692.1| integration host factor subunit alpha [Pseudomonas fluorescens
SBW25]
gi|237801009|ref|ZP_04589470.1| integration host factor subunit alpha [Pseudomonas syringae pv.
oryzae str. 1_6]
gi|257486166|ref|ZP_05640207.1| integration host factor subunit alpha [Pseudomonas syringae pv.
tabaci ATCC 11528]
gi|289623630|ref|ZP_06456584.1| integration host factor subunit alpha [Pseudomonas syringae pv.
aesculi str. NCPPB3681]
gi|289647152|ref|ZP_06478495.1| integration host factor subunit alpha [Pseudomonas syringae pv.
aesculi str. 2250]
gi|289673310|ref|ZP_06494200.1| integration host factor subunit alpha [Pseudomonas syringae pv.
syringae FF5]
gi|298486707|ref|ZP_07004764.1| Integration host factor alpha subunit [Pseudomonas savastanoi pv.
savastanoi NCPPB 3335]
gi|301385321|ref|ZP_07233739.1| integration host factor subunit alpha [Pseudomonas syringae pv.
tomato Max13]
gi|302062680|ref|ZP_07254221.1| integration host factor subunit alpha [Pseudomonas syringae pv.
tomato K40]
gi|302132637|ref|ZP_07258627.1| integration host factor subunit alpha [Pseudomonas syringae pv.
tomato NCPPB 1108]
gi|302187619|ref|ZP_07264292.1| integration host factor subunit alpha [Pseudomonas syringae pv.
syringae 642]
gi|312961937|ref|ZP_07776434.1| integration host factor, alpha subunit [Pseudomonas fluorescens
WH6]
gi|38372323|sp|Q883H6|IHFA_PSESM RecName: Full=Integration host factor subunit alpha;
Short=IHF-alpha
gi|81308305|sp|Q4ZUG1|IHFA_PSEU2 RecName: Full=Integration host factor subunit alpha;
Short=IHF-alpha
gi|123605197|sp|Q3KEX6|IHFA_PSEPF RecName: Full=Integration host factor subunit alpha;
Short=IHF-alpha
gi|123747651|sp|Q48JR7|IHFA_PSE14 RecName: Full=Integration host factor subunit alpha;
Short=IHF-alpha
gi|123748498|sp|Q4KEV8|IHFA_PSEF5 RecName: Full=Integration host factor subunit alpha;
Short=IHF-alpha
gi|259491533|sp|C3JZN1|IHFA_PSEFS RecName: Full=Integration host factor subunit alpha;
Short=IHF-alpha
gi|28852823|gb|AAO55895.1| integration host factor, alpha subunit [Pseudomonas syringae pv.
tomato str. DC3000]
gi|63256115|gb|AAY37211.1| Integration host factor, alpha subunit [Pseudomonas syringae pv.
syringae B728a]
gi|68343786|gb|AAY91392.1| integration host factor, alpha subunit [Pseudomonas fluorescens
Pf-5]
gi|71558281|gb|AAZ37492.1| integration host factor, alpha subunit [Pseudomonas syringae pv.
phaseolicola 1448A]
gi|77382167|gb|ABA73680.1| integration host factor alpha-subunit [Pseudomonas fluorescens
Pf0-1]
gi|213924660|gb|EEB58228.1| integration host factor subunit alpha [Pseudomonas syringae pv.
tomato T1]
gi|229363439|emb|CAY50633.1| integration host factor alpha-subunit [Pseudomonas fluorescens
SBW25]
gi|298158790|gb|EFH99853.1| Integration host factor alpha subunit [Pseudomonas savastanoi pv.
savastanoi NCPPB 3335]
gi|311283747|gb|EFQ62331.1| integration host factor, alpha subunit [Pseudomonas fluorescens
WH6]
gi|320324308|gb|EFW80387.1| integration host factor subunit alpha [Pseudomonas syringae pv.
glycinea str. B076]
gi|320328570|gb|EFW84572.1| integration host factor subunit alpha [Pseudomonas syringae pv.
glycinea str. race 4]
gi|330867701|gb|EGH02410.1| integration host factor subunit alpha [Pseudomonas syringae pv.
aesculi str. 0893_23]
gi|330876795|gb|EGH10944.1| integration host factor subunit alpha [Pseudomonas syringae pv.
morsprunorum str. M302280PT]
gi|330885570|gb|EGH19719.1| integration host factor subunit alpha [Pseudomonas syringae pv.
glycinea str. race 4]
gi|330888323|gb|EGH20984.1| integration host factor subunit alpha [Pseudomonas syringae pv.
mori str. 301020]
gi|330898072|gb|EGH29491.1| integration host factor subunit alpha [Pseudomonas syringae pv.
japonica str. M301072PT]
gi|330943383|gb|EGH45746.1| integration host factor subunit alpha [Pseudomonas syringae pv.
pisi str. 1704B]
gi|330951872|gb|EGH52132.1| integration host factor subunit alpha [Pseudomonas syringae Cit 7]
gi|330958893|gb|EGH59153.1| integration host factor subunit alpha [Pseudomonas syringae pv.
maculicola str. ES4326]
gi|330967292|gb|EGH67552.1| integration host factor subunit alpha [Pseudomonas syringae pv.
actinidiae str. M302091]
gi|330973946|gb|EGH74012.1| integration host factor subunit alpha [Pseudomonas syringae pv.
aceris str. M302273PT]
gi|330977715|gb|EGH77618.1| integration host factor subunit alpha [Pseudomonas syringae pv.
aptata str. DSM 50252]
gi|330989235|gb|EGH87338.1| integration host factor subunit alpha [Pseudomonas syringae pv.
lachrymans str. M301315]
gi|331010496|gb|EGH90552.1| integration host factor subunit alpha [Pseudomonas syringae pv.
tabaci ATCC 11528]
gi|331016133|gb|EGH96189.1| integration host factor subunit alpha [Pseudomonas syringae pv.
lachrymans str. M302278PT]
gi|331023866|gb|EGI03923.1| integration host factor subunit alpha [Pseudomonas syringae pv.
oryzae str. 1_6]
Length = 100
Score = 91.8 bits (227), Expect = 3e-17, Method: Composition-based stats.
Identities = 27/97 (27%), Positives = 52/97 (53%), Gaps = 1/97 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ + + ++ LN ++ +++V + EE+ AL + +V++ GFG+F +R + R
Sbjct: 5 TKAEMAERLYEEL-GLNKREAKELVELFFEEIRHALEDNEQVKLSGFGNFDLRDKRQRPG 63
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDSTLS 98
R P + I + + V FR G+ LK R+ + T S
Sbjct: 64 RNPKTGEEIPITARRVVTFRPGQKLKARVEAYAGTKS 100
>gi|332284513|ref|YP_004416424.1| integration host factor beta-subunit [Pusillimonas sp. T7-7]
gi|330428466|gb|AEC19800.1| integration host factor beta-subunit [Pusillimonas sp. T7-7]
Length = 106
Score = 91.8 bits (227), Expect = 3e-17, Method: Composition-based stats.
Identities = 30/98 (30%), Positives = 50/98 (51%), Gaps = 1/98 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ L + + LN ++ + IV+ EE+ +LA G V++ GFG+F VR + R
Sbjct: 8 TKAELAELLFDR-VGLNKREAKDIVDTFFEEIRDSLARGVEVKLSGFGNFQVRDKPPRPG 66
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDSTLSN 99
R P +VI + + V F A + LK + S T ++
Sbjct: 67 RNPKTGEVIPIAARRVVTFHASQKLKTVVESAGKTPAS 104
>gi|329117127|ref|ZP_08245844.1| DNA-binding protein HU-beta [Streptococcus parauberis NCFD 2020]
gi|326907532|gb|EGE54446.1| DNA-binding protein HU-beta [Streptococcus parauberis NCFD 2020]
Length = 91
Score = 91.8 bits (227), Expect = 3e-17, Method: Composition-based stats.
Identities = 31/90 (34%), Positives = 48/90 (53%), Gaps = 1/90 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K LI +A+ +L +D V+ + + L+ G +V++ GFG+F VR+RAAR
Sbjct: 3 NKQDLIAKVAEAT-ELTKKDSAAAVDAVFSAIEAFLSEGEKVQLIGFGNFEVRERAARKG 61
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P I + VP F+AGK LK+ +
Sbjct: 62 RNPQTGAEIEIAASKVPAFKAGKALKDAVK 91
>gi|326795746|ref|YP_004313566.1| Integration host factor subunit alpha [Marinomonas mediterranea
MMB-1]
gi|326546510|gb|ADZ91730.1| Integration host factor subunit alpha [Marinomonas mediterranea
MMB-1]
Length = 98
Score = 91.8 bits (227), Expect = 3e-17, Method: Composition-based stats.
Identities = 23/91 (25%), Positives = 48/91 (52%), Gaps = 1/91 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ L + + L +D + +V + + ++L + +V++ GFG+F VR+++ R
Sbjct: 5 TKADLAENLVE-TIGLTKKDAKDLVEGFFQVIRESLVDREQVKLSGFGNFEVREKSQRPG 63
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P + I + + V FR G+ LK ++ +
Sbjct: 64 RNPKTGEEIPITARTVVTFRPGQKLKAKVEN 94
>gi|117924551|ref|YP_865168.1| histone family protein DNA-binding protein [Magnetococcus sp.
MC-1]
gi|117926183|ref|YP_866800.1| histone family protein DNA-binding protein [Magnetococcus sp.
MC-1]
gi|117608307|gb|ABK43762.1| histone family protein DNA-binding protein [Magnetococcus sp.
MC-1]
gi|117609939|gb|ABK45394.1| histone family protein DNA-binding protein [Magnetococcus sp.
MC-1]
Length = 91
Score = 91.8 bits (227), Expect = 3e-17, Method: Composition-based stats.
Identities = 31/91 (34%), Positives = 50/91 (54%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M + L +A+K +++ D +++ E ++ AL NG V++ GFG+FS+ +RAAR
Sbjct: 1 MKMAELKKAVAEK-AEMSQSDANQVIKACFEAISDALGNGETVQLPGFGTFSLGERAART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P I + F+AGK LK+ LN
Sbjct: 60 GRNPQTGAEIQIAASKSVKFKAGKALKDSLN 90
>gi|320539744|ref|ZP_08039407.1| putative HU, DNA-binding transcriptional regulator, alpha subunit
[Serratia symbiotica str. Tucson]
gi|320030209|gb|EFW12225.1| putative HU, DNA-binding transcriptional regulator, alpha subunit
[Serratia symbiotica str. Tucson]
Length = 90
Score = 91.4 bits (226), Expect = 3e-17, Method: Composition-based stats.
Identities = 31/91 (34%), Positives = 46/91 (50%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI IA K L+ + + L +T++L G V++ GFG+F V R+ R
Sbjct: 1 MNKTQLIDVIADK-ADLSKAQAKLALESTLVAITESLKEGDAVQLVGFGTFKVNHRSERT 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P K I + VP F +GK LK+ +
Sbjct: 60 GRNPQTGKEIKIAAANVPAFVSGKALKDAVK 90
>gi|91779140|ref|YP_554348.1| DNA-binding protein HU-alpha [Burkholderia xenovorans LB400]
gi|170693299|ref|ZP_02884459.1| histone family protein DNA-binding protein [Burkholderia graminis
C4D1M]
gi|187919389|ref|YP_001888420.1| histone family protein DNA-binding protein [Burkholderia
phytofirmans PsJN]
gi|296156548|ref|ZP_06839386.1| histone family protein DNA-binding protein [Burkholderia sp.
Ch1-1]
gi|307727373|ref|YP_003910586.1| histone family protein DNA-binding protein [Burkholderia sp.
CCGE1003]
gi|323528361|ref|YP_004230513.1| histone family protein DNA-binding protein [Burkholderia sp.
CCGE1001]
gi|91691800|gb|ABE34998.1| DNA-binding protein HU-alpha [Burkholderia xenovorans LB400]
gi|170141829|gb|EDT09997.1| histone family protein DNA-binding protein [Burkholderia graminis
C4D1M]
gi|187717827|gb|ACD19050.1| histone family protein DNA-binding protein [Burkholderia
phytofirmans PsJN]
gi|295893147|gb|EFG72927.1| histone family protein DNA-binding protein [Burkholderia sp.
Ch1-1]
gi|307587898|gb|ADN61295.1| histone family protein DNA-binding protein [Burkholderia sp.
CCGE1003]
gi|323385363|gb|ADX57453.1| histone family protein DNA-binding protein [Burkholderia sp.
CCGE1001]
Length = 92
Score = 91.4 bits (226), Expect = 3e-17, Method: Composition-based stats.
Identities = 30/92 (32%), Positives = 47/92 (51%), Gaps = 1/92 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K LI +A + + + ++ ++E +T+A+ G V++ GFGSFS RAAR+
Sbjct: 1 MNKQELIDAVAAATGE-SKAATGQTIDAIVEAVTKAVVGGDTVQLVGFGSFSTGARAARV 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P I + F AGK KE +N+
Sbjct: 60 GRNPSTGAEIQIAAAKTVKFTAGKAFKEAVNA 91
>gi|295398577|ref|ZP_06808609.1| DNA-binding protein HU [Aerococcus viridans ATCC 11563]
gi|294973178|gb|EFG48973.1| DNA-binding protein HU [Aerococcus viridans ATCC 11563]
Length = 106
Score = 91.4 bits (226), Expect = 3e-17, Method: Composition-based stats.
Identities = 31/90 (34%), Positives = 49/90 (54%), Gaps = 1/90 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ L+ +A + + V +V+ + E++ LA+G +V++ GFGSF VR RAAR
Sbjct: 18 NKAELVQNVANAVGD-SKKSVAPVVDAVFEQIEAFLADGEKVQLIGFGSFEVRDRAARKG 76
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P I + VP F+ GK LK+ +
Sbjct: 77 RNPQTGDEIEIPASKVPAFKPGKALKDAVK 106
>gi|254785577|ref|YP_003073006.1| integration host factor subunit alpha [Teredinibacter turnerae
T7901]
gi|237683400|gb|ACR10664.1| integration host factor, alpha subunit [Teredinibacter turnerae
T7901]
Length = 107
Score = 91.4 bits (226), Expect = 3e-17, Method: Composition-based stats.
Identities = 27/95 (28%), Positives = 49/95 (51%), Gaps = 1/95 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ L + ++ N ++ +++V EE+ AL N +V++ GFG+F +R + R
Sbjct: 13 TKADLAENLYEEL-GFNKREAKELVEYFFEEIRNALENNEQVKLSGFGNFDLRDKKQRPG 71
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDST 96
R P + I + + V FR G+ LK R+ + T
Sbjct: 72 RNPKTGEEIPITARRVVTFRPGQKLKARVEAYAGT 106
>gi|238765544|ref|ZP_04626458.1| DNA-binding protein HU-alpha [Yersinia kristensenii ATCC 33638]
gi|238696239|gb|EEP89042.1| DNA-binding protein HU-alpha [Yersinia kristensenii ATCC 33638]
Length = 91
Score = 91.4 bits (226), Expect = 3e-17, Method: Composition-based stats.
Identities = 32/92 (34%), Positives = 46/92 (50%), Gaps = 1/92 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI IA K L+ + + L +T++L G V++ GFG+F V R R
Sbjct: 1 MNKTQLIDVIADK-ADLSKVQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRNERT 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P K I + VP F +GK LK+ + S
Sbjct: 60 GRNPQTGKEIKIAAANVPAFVSGKALKDAVKS 91
>gi|88799977|ref|ZP_01115548.1| integration host factor alpha subunit [Reinekea sp. MED297]
gi|88777255|gb|EAR08459.1| integration host factor alpha subunit [Reinekea sp. MED297]
Length = 100
Score = 91.4 bits (226), Expect = 3e-17, Method: Composition-based stats.
Identities = 25/98 (25%), Positives = 51/98 (52%), Gaps = 1/98 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ + + ++ LN ++ +++V + EE+ ++L + +V++ GFG+F +R + R
Sbjct: 4 TKAEMADRLYEEL-GLNKREAKEMVEIFFEEIRESLVHNEQVKLSGFGNFDLRDKRQRPG 62
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDSTLSN 99
R P + I + + V FR G+ LK + S T
Sbjct: 63 RNPKTGEEIPISARRVVTFRPGQKLKVTVESYAGTQPE 100
>gi|54309334|ref|YP_130354.1| integration host factor subunit alpha [Photobacterium profundum
SS9]
gi|46913770|emb|CAG20552.1| putative integration host factor, alpha subunit [Photobacterium
profundum SS9]
Length = 103
Score = 91.4 bits (226), Expect = 3e-17, Method: Composition-based stats.
Identities = 30/93 (32%), Positives = 51/93 (54%), Gaps = 1/93 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ L + + N L+ +D + V + EE+ +AL NG +V++ GFG+F +R + R
Sbjct: 9 TKADLAEDLFE-NVGLSKRDAKDTVEVFFEEIRKALENGEQVKLSGFGNFDLRDKNERPG 67
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLNSPD 94
R P + I + + V FR G+ LK R+ S +
Sbjct: 68 RNPKTGEDIPISARRVVTFRPGQKLKARVESIE 100
>gi|218245818|ref|YP_002371189.1| histone family protein DNA-binding protein [Cyanothece sp. PCC
8801]
gi|257058864|ref|YP_003136752.1| histone family protein DNA-binding protein [Cyanothece sp. PCC
8802]
gi|218166296|gb|ACK65033.1| histone family protein DNA-binding protein [Cyanothece sp. PCC
8801]
gi|256589030|gb|ACU99916.1| histone family protein DNA-binding protein [Cyanothece sp. PCC
8802]
Length = 98
Score = 91.4 bits (226), Expect = 3e-17, Method: Composition-based stats.
Identities = 30/99 (30%), Positives = 51/99 (51%), Gaps = 1/99 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K L+ IA K + +D +I++ L E + + +A+G +V + GFG+F R R R
Sbjct: 1 MNKEDLVNMIAAKTR-ITKKDTSQILDALTETIMETVASGEKVVLVGFGTFEPRDRKERK 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDSTLSN 99
P + I++ VP F AGK KE++ + ++
Sbjct: 60 GMNPQTGQPITIPATTVPAFSAGKVFKEQVVNKGKEDAS 98
>gi|89094709|ref|ZP_01167645.1| integration host factor, alpha subunit [Oceanospirillum sp.
MED92]
gi|89081055|gb|EAR60291.1| integration host factor, alpha subunit [Oceanospirillum sp.
MED92]
Length = 101
Score = 91.4 bits (226), Expect = 3e-17, Method: Composition-based stats.
Identities = 23/89 (25%), Positives = 48/89 (53%), Gaps = 1/89 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ + + ++ LN ++ +++V +E+ LA +V++ GFG+F +R + R
Sbjct: 5 TKADMAERLNEEL-GLNKREAKEMVESFFDEIRACLAANEQVKLSGFGNFDLRDKRQRPG 63
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P + + + + V FR G+ LK+R+
Sbjct: 64 RNPKTGEEVPISARRVVTFRPGQKLKDRV 92
>gi|296238979|gb|ADH01502.1| histone family protein DNA-binding protein [Pseudomonas sp. 2663]
Length = 92
Score = 91.4 bits (226), Expect = 3e-17, Method: Composition-based stats.
Identities = 30/93 (32%), Positives = 48/93 (51%), Gaps = 1/93 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K LI +A + +++ LLE +T A++ V++ GFG+FS +RAAR+
Sbjct: 1 MNKQELIDAVAAST-GASKTATSEVIQALLEVITHAVSADDTVQLIGFGAFSQGQRAARI 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSP 93
R P I++ F AGK K+ +N+P
Sbjct: 60 GRNPTTGAEIAIAAAKTVKFIAGKAFKDAVNAP 92
>gi|304310704|ref|YP_003810302.1| Integration host factor alpha subunit [gamma proteobacterium
HdN1]
gi|301796437|emb|CBL44645.1| Integration host factor alpha subunit [gamma proteobacterium
HdN1]
Length = 100
Score = 91.4 bits (226), Expect = 3e-17, Method: Composition-based stats.
Identities = 24/89 (26%), Positives = 47/89 (52%), Gaps = 1/89 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ L + ++ LN ++ +++V + +E+ L V++ GFG+F +R + R
Sbjct: 5 TKADLAERLFEEL-GLNKREAKEMVELFFDEIRVCLEQNEHVKLSGFGNFDLRNKRERPG 63
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P + I + + V FR G+ LK+R+
Sbjct: 64 RNPKTGEEIPITARRVVTFRPGQKLKQRV 92
>gi|162447729|ref|YP_001620861.1| DNA binding protein [Acholeplasma laidlawii PG-8A]
gi|161985836|gb|ABX81485.1| DNA binding protein, histone-like protein [Acholeplasma laidlawii
PG-8A]
Length = 90
Score = 91.4 bits (226), Expect = 3e-17, Method: Composition-based stats.
Identities = 31/91 (34%), Positives = 51/91 (56%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ L+ +A K ++ EK+VN ++ +T+ L+ +V + GFG+F VR R AR
Sbjct: 1 MNKTELVALVADK-AEVTQAMAEKVVNSFVDVVTETLSKDEKVVVTGFGTFEVRNRVARR 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
+ P + I V + P F+AGK LK+ +
Sbjct: 60 GKNPRTGEEIIVPAQKTPAFKAGKLLKDAVK 90
>gi|74317031|ref|YP_314771.1| integration host factor subunit alpha [Thiobacillus denitrificans
ATCC 25259]
gi|123731845|sp|Q3SK28|IHFA_THIDA RecName: Full=Integration host factor subunit alpha;
Short=IHF-alpha
gi|74056526|gb|AAZ96966.1| integration host factor, alpha subunit [Thiobacillus
denitrificans ATCC 25259]
Length = 103
Score = 91.4 bits (226), Expect = 3e-17, Method: Composition-based stats.
Identities = 24/89 (26%), Positives = 45/89 (50%), Gaps = 1/89 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ L + +K LN ++ + +V +E+ AL G V++ GFG+F R++ R
Sbjct: 5 TKADLAELLFEK-VGLNKREAKDVVESFFDEIRLALEKGDIVKLSGFGNFQCREKPQRPG 63
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P + + + + V F A + LK ++
Sbjct: 64 RNPKTGEEMPISARRVVTFHASQKLKSQV 92
>gi|241763693|ref|ZP_04761742.1| histone family protein DNA-binding protein [Acidovorax
delafieldii 2AN]
gi|241367082|gb|EER61456.1| histone family protein DNA-binding protein [Acidovorax
delafieldii 2AN]
Length = 90
Score = 91.4 bits (226), Expect = 4e-17, Method: Composition-based stats.
Identities = 35/91 (38%), Positives = 49/91 (53%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI IA N ++ + + +E + + L GG V + GFG+F+V KRAAR
Sbjct: 1 MNKTELIEHIAN-NADISKAAAARALESTIEAVKKTLKKGGTVSLVGFGTFAVGKRAART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P I ++ VP FR GK LK+ LN
Sbjct: 60 GRNPRTGAAIKIKAAKVPKFRPGKALKDALN 90
>gi|227115024|ref|ZP_03828680.1| transcriptional regulator HU subunit alpha [Pectobacterium
carotovorum subsp. brasiliensis PBR1692]
gi|227328381|ref|ZP_03832405.1| transcriptional regulator HU subunit alpha [Pectobacterium
carotovorum subsp. carotovorum WPP14]
gi|253686628|ref|YP_003015818.1| histone family protein DNA-binding protein [Pectobacterium
carotovorum subsp. carotovorum PC1]
gi|261819582|ref|YP_003257688.1| transcriptional regulator HU subunit alpha [Pectobacterium
wasabiae WPP163]
gi|251753206|gb|ACT11282.1| histone family protein DNA-binding protein [Pectobacterium
carotovorum subsp. carotovorum PC1]
gi|261603595|gb|ACX86081.1| histone family protein DNA-binding protein [Pectobacterium
wasabiae WPP163]
Length = 90
Score = 91.4 bits (226), Expect = 4e-17, Method: Composition-based stats.
Identities = 31/91 (34%), Positives = 45/91 (49%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI IA K L+ + + L +T++L G V++ GFG+F V R R
Sbjct: 1 MNKTQLIDVIADK-ADLSKAQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRNERT 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P K I + VP F +GK LK+ +
Sbjct: 60 GRNPQTGKEIKIAAANVPAFVSGKALKDAVK 90
>gi|254392478|ref|ZP_05007658.1| DNA-binding protein HU [Streptomyces clavuligerus ATCC 27064]
gi|294815333|ref|ZP_06773976.1| Histone protein DNA-binding protein [Streptomyces clavuligerus
ATCC 27064]
gi|326443687|ref|ZP_08218421.1| histone-like DNA binding protein [Streptomyces clavuligerus ATCC
27064]
gi|197706145|gb|EDY51957.1| DNA-binding protein HU [Streptomyces clavuligerus ATCC 27064]
gi|294327932|gb|EFG09575.1| Histone protein DNA-binding protein [Streptomyces clavuligerus
ATCC 27064]
Length = 222
Score = 91.4 bits (226), Expect = 4e-17, Method: Composition-based stats.
Identities = 32/90 (35%), Positives = 49/90 (54%), Gaps = 2/90 (2%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ L+ IA K Q V+ +L+ + +A+ G RV + GFGSF +R AR
Sbjct: 1 MNKAQLVEAIADKLGG--RQQAADAVDSVLDAIVRAVVAGDRVSVTGFGSFEKVERPARY 58
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
AR P + + V++ VP FRAG+ K+ +
Sbjct: 59 ARNPQTGERVRVKKTSVPRFRAGQGFKDLV 88
>gi|116515125|ref|YP_802754.1| HimD [Buchnera aphidicola str. Cc (Cinara cedri)]
gi|122285479|sp|Q057N8|IHFB_BUCCC RecName: Full=Integration host factor subunit beta;
Short=IHF-beta
gi|116256979|gb|ABJ90661.1| integration host factor beta-subunit [Buchnera aphidicola str. Cc
(Cinara cedri)]
Length = 97
Score = 91.4 bits (226), Expect = 4e-17, Method: Composition-based stats.
Identities = 39/97 (40%), Positives = 60/97 (61%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
MIKS L I +K + + +E +V +LE M+ +L G R+EIRGFGSFS+ R AR+
Sbjct: 1 MIKSELFERITEKKTYIPAKIIEYVVKNILEYMSLSLEKGNRIEIRGFGSFSLHYRFARI 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDSTL 97
R P + + ++EK VP F+ GK L++R+N+ +
Sbjct: 61 GRNPKTGEKVYLKEKYVPHFKPGKQLRDRINNIYKKI 97
>gi|152983749|ref|YP_001351441.1| putative DNA-binding protein [Pseudomonas aeruginosa PA7]
gi|150958907|gb|ABR80932.1| probable DNA-binding protein [Pseudomonas aeruginosa PA7]
Length = 90
Score = 91.4 bits (226), Expect = 4e-17, Method: Composition-based stats.
Identities = 28/91 (30%), Positives = 46/91 (50%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K L IA+K L + +++N LL+E+T AL V + GFG+F R R A
Sbjct: 1 MRKPELAAAIAEK-ADLTKEQANRVLNALLDEITGALNRKDSVTLVGFGTFLQRHRGAST 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
+ P + + ++ F+ GK L++ +N
Sbjct: 60 GKNPQTGQPVKIKASNTVAFKPGKALRDAVN 90
>gi|241589902|ref|YP_002979927.1| histone family protein DNA-binding protein [Ralstonia pickettii
12D]
gi|240868614|gb|ACS66273.1| histone family protein DNA-binding protein [Ralstonia pickettii
12D]
Length = 94
Score = 91.4 bits (226), Expect = 4e-17, Method: Composition-based stats.
Identities = 27/93 (29%), Positives = 45/93 (48%), Gaps = 1/93 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M + L IA ++ + V + ++ + +T A+A+G V+I GFG+FS +R AR
Sbjct: 1 MNRKDLAKAIADRS-NTSSAQVMRWLDAFEKVVTDAVASGDVVQIMGFGTFSTSRRRARN 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSP 93
P + I V F AG L++ +N
Sbjct: 60 GHNPGTGEEIQVPAVTTVRFSAGSRLRQAVNRE 92
>gi|134095000|ref|YP_001100075.1| integration host factor subunit alpha [Herminiimonas
arsenicoxydans]
gi|133738903|emb|CAL61950.1| Integration host factor subunit alpha (IHF-alpha) [Herminiimonas
arsenicoxydans]
Length = 151
Score = 91.4 bits (226), Expect = 4e-17, Method: Composition-based stats.
Identities = 24/89 (26%), Positives = 44/89 (49%), Gaps = 1/89 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ L + ++ LN ++ + +V +E+ AL G V++ GFG+F +R + R
Sbjct: 52 TKAELAELLFEQ-VGLNKREAKDMVETFFDEIRNALERGEAVKLSGFGNFQLRDKPQRPG 110
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P + I + + V F A + LK +
Sbjct: 111 RNPKTGEEIPITARRVVTFHASQKLKSMV 139
>gi|88803467|ref|ZP_01118993.1| DNA-binding protein HU-beta (NS1) (HU-1) [Polaribacter irgensii
23-P]
gi|88781033|gb|EAR12212.1| DNA-binding protein HU-beta (NS1) (HU-1) [Polaribacter irgensii
23-P]
Length = 90
Score = 91.4 bits (226), Expect = 4e-17, Method: Composition-based stats.
Identities = 29/91 (31%), Positives = 45/91 (49%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI +A + ++ + + +T +L +V + GFG+FSV +RAAR
Sbjct: 1 MNKSDLIDAMAA-DAGISKVAAKAALESFTTHITSSLQKKEKVALVGFGTFSVSERAARS 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P I + K V F+AG L + +N
Sbjct: 60 GRNPQTGATIQISAKNVAKFKAGAGLSDAVN 90
>gi|90410619|ref|ZP_01218635.1| integration host factor alpha subunit [Photobacterium profundum
3TCK]
gi|90328860|gb|EAS45144.1| integration host factor alpha subunit [Photobacterium profundum
3TCK]
Length = 98
Score = 91.4 bits (226), Expect = 4e-17, Method: Composition-based stats.
Identities = 30/93 (32%), Positives = 51/93 (54%), Gaps = 1/93 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ L + + N L+ +D + V + EE+ +AL NG +V++ GFG+F +R + R
Sbjct: 4 TKADLAEDLFE-NVGLSKRDAKDTVEVFFEEIRKALENGEQVKLSGFGNFDLRDKNERPG 62
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLNSPD 94
R P + I + + V FR G+ LK R+ S +
Sbjct: 63 RNPKTGEDIPISARRVVTFRPGQKLKARVESIE 95
>gi|331007938|ref|ZP_08331000.1| Integration host factor alpha subunit [gamma proteobacterium
IMCC1989]
gi|330418251|gb|EGG92855.1| Integration host factor alpha subunit [gamma proteobacterium
IMCC1989]
Length = 106
Score = 91.4 bits (226), Expect = 4e-17, Method: Composition-based stats.
Identities = 26/95 (27%), Positives = 50/95 (52%), Gaps = 1/95 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ L + ++ N ++ +++V + EE+ AL + +V++ GFG+F +R + R
Sbjct: 11 TKAELAEKLYEEL-GFNKREAKELVELFFEEIRNALESNEQVKLSGFGNFDLRDKKQRPG 69
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDST 96
R P + I + + V FR G+ LK R+ + T
Sbjct: 70 RNPKTGEEIPISARRVVTFRPGQKLKARVEAHAGT 104
>gi|323697944|ref|ZP_08109856.1| histone family protein DNA-binding protein [Desulfovibrio sp.
ND132]
gi|323457876|gb|EGB13741.1| histone family protein DNA-binding protein [Desulfovibrio
desulfuricans ND132]
Length = 91
Score = 91.4 bits (226), Expect = 4e-17, Method: Composition-based stats.
Identities = 36/92 (39%), Positives = 53/92 (57%), Gaps = 1/92 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI ++++ K++ + K+V ++ + +AL G RVEIRGFGSF ++
Sbjct: 1 MNKSELIKALSEQ-KKMHVDEATKVVGAFVDSVKEALLRGDRVEIRGFGSFKIKDYEGYT 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P V+ V K +PFFR GK LKE +N
Sbjct: 60 GRNPKTGTVVQVRPKKLPFFRPGKELKEYINQ 91
>gi|288957866|ref|YP_003448207.1| integration host factor subunit alpha [Azospirillum sp. B510]
gi|288910174|dbj|BAI71663.1| integration host factor subunit alpha [Azospirillum sp. B510]
Length = 111
Score = 91.4 bits (226), Expect = 4e-17, Method: Composition-based stats.
Identities = 28/91 (30%), Positives = 49/91 (53%), Gaps = 1/91 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
++ L + ++ L+ + +V +L+E++ ALA G V+I FGSF VR++ R+
Sbjct: 7 TRAQLSEAVYQE-VGLSRNESADLVETVLDEISDALARGEMVKISSFGSFQVRQKGERVG 65
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P + + + + V FRA LK R+N
Sbjct: 66 RNPKTGEEVPILPRRVLVFRASHVLKHRINE 96
>gi|126641618|ref|YP_001084602.1| integration host factor beta subunit [Acinetobacter baumannii
ATCC 17978]
Length = 90
Score = 91.4 bits (226), Expect = 4e-17, Method: Composition-based stats.
Identities = 36/89 (40%), Positives = 54/89 (60%)
Query: 7 IGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLARAPLA 66
I IA KNP L VE+ V +++++M +AL++ R+EIRGFGSF++ R R+ R P
Sbjct: 2 IERIALKNPHLAEPLVEEAVKIMIDQMIEALSSDNRIEIRGFGSFALHHREPRVGRNPKT 61
Query: 67 QKVISVEEKMVPFFRAGKNLKERLNSPDS 95
K + V K VP F+ GK L++ +N
Sbjct: 62 GKSVDVAAKAVPHFKPGKALRDAVNESGK 90
>gi|284050974|ref|ZP_06381184.1| nucleoid protein Hbs [Arthrospira platensis str. Paraca]
gi|291567416|dbj|BAI89688.1| DNA-binding protein [Arthrospira platensis NIES-39]
Length = 98
Score = 91.4 bits (226), Expect = 4e-17, Method: Composition-based stats.
Identities = 30/96 (31%), Positives = 50/96 (52%), Gaps = 1/96 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K L+ + K + + + I++ + E + A+A+G +V + GFGSF R R AR
Sbjct: 1 MNKEQLVQETSIK-AGVTKKQADAIISAICECIMDAVADGEKVTLVGFGSFEARHRKARE 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDST 96
R P + +++ VP F AGK KER+ + +
Sbjct: 60 GRNPSTGQPMTIPATTVPAFSAGKAFKERVANESNE 95
>gi|221066200|ref|ZP_03542305.1| integration host factor, alpha subunit [Comamonas testosteroni
KF-1]
gi|220711223|gb|EED66591.1| integration host factor, alpha subunit [Comamonas testosteroni
KF-1]
Length = 108
Score = 91.4 bits (226), Expect = 4e-17, Method: Composition-based stats.
Identities = 26/94 (27%), Positives = 47/94 (50%), Gaps = 1/94 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ L + + LN ++ + +V+ + ++Q L G V++ GFG+F +R +A R
Sbjct: 14 TKAQLADLLFDEI-GLNKREAKDMVDAFFDLISQKLVEGEDVKLSGFGNFQIRTKAPRPG 72
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDS 95
R P ++I + + V F A LKE + S
Sbjct: 73 RNPRTGELIPIAARRVVTFHASSKLKELIQGESS 106
>gi|56475892|ref|YP_157481.1| integration host factor subunit alpha [Aromatoleum aromaticum
EbN1]
gi|81677575|sp|Q5P7Y1|IHFA_AZOSE RecName: Full=Integration host factor subunit alpha;
Short=IHF-alpha
gi|56311935|emb|CAI06580.1| integration host factor, alpha-subunit [Aromatoleum aromaticum
EbN1]
Length = 103
Score = 91.4 bits (226), Expect = 4e-17, Method: Composition-based stats.
Identities = 26/89 (29%), Positives = 45/89 (50%), Gaps = 1/89 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ L + ++ LN ++ + +V EE+ QAL G V++ GFG+F +R + R
Sbjct: 6 TKAELADLLFER-VGLNKREAKDMVEGFFEEIRQALERGECVKLSGFGNFQLRDKPQRPG 64
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P + I + + V F A + LK +
Sbjct: 65 RNPKTGEEIPITARRVVTFHASQKLKAAV 93
>gi|332666093|ref|YP_004448881.1| histone family protein DNA-binding protein [Haliscomenobacter
hydrossis DSM 1100]
gi|332334907|gb|AEE52008.1| histone family protein DNA-binding protein [Haliscomenobacter
hydrossis DSM 1100]
Length = 90
Score = 91.4 bits (226), Expect = 4e-17, Method: Composition-based stats.
Identities = 32/91 (35%), Positives = 48/91 (52%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K LI IA+ K+ +N +L+ + L G+V + GFG+FSV KR AR
Sbjct: 1 MNKGDLINKIAE-GAKITKAQATDALNAVLDSIAAELKGDGKVTLIGFGTFSVSKRDARS 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + I+++ K V F+ GK L + +N
Sbjct: 60 GRNPQTGQTITIDAKKVVKFKPGKELSDSVN 90
>gi|270265438|ref|ZP_06193697.1| DNA-binding protein HU-alpha [Serratia odorifera 4Rx13]
gi|1706309|sp|P52680|DBHA_SERMA RecName: Full=DNA-binding protein HU-alpha; AltName: Full=HU-2;
AltName: Full=NS2
gi|802006|gb|AAA65987.1| HU alpha [Serratia marcescens]
gi|270040631|gb|EFA13736.1| DNA-binding protein HU-alpha [Serratia odorifera 4Rx13]
gi|1586262|prf||2203354A heterodimeric HU protein
Length = 90
Score = 91.4 bits (226), Expect = 4e-17, Method: Composition-based stats.
Identities = 31/91 (34%), Positives = 46/91 (50%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI IA K L+ + + L +T++L G V++ GFG+F V R+ R
Sbjct: 1 MNKTQLIDVIADK-ADLSKAQAKLALESTLAAITESLKEGDAVQLVGFGTFKVNHRSERT 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P K I + VP F +GK LK+ +
Sbjct: 60 GRNPQTGKEIKIAAANVPAFVSGKALKDAVK 90
>gi|149191095|ref|ZP_01869355.1| integration host factor subunit alpha [Vibrio shilonii AK1]
gi|148835123|gb|EDL52100.1| integration host factor subunit alpha [Vibrio shilonii AK1]
Length = 97
Score = 91.4 bits (226), Expect = 4e-17, Method: Composition-based stats.
Identities = 26/93 (27%), Positives = 50/93 (53%), Gaps = 1/93 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ L + +K + +D ++ V + EE+ ++L +G +V++ GFG+F +R + R
Sbjct: 4 TKADLAENLFEKL-GFSKRDAKETVEVFFEEIRKSLESGEQVKLSGFGNFDLRDKNERPG 62
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLNSPD 94
R P + I + + V FR G+ LK R+ +
Sbjct: 63 RNPKTGEDIPISARRVVTFRPGQKLKARVENIK 95
>gi|109898808|ref|YP_662063.1| integration host factor, alpha subunit [Pseudoalteromonas
atlantica T6c]
gi|332306904|ref|YP_004434755.1| integration host factor, alpha subunit [Glaciecola agarilytica
4H-3-7+YE-5]
gi|122971862|sp|Q15SX9|IHFA_PSEA6 RecName: Full=Integration host factor subunit alpha;
Short=IHF-alpha
gi|109701089|gb|ABG41009.1| integration host factor, alpha subunit [Pseudoalteromonas
atlantica T6c]
gi|332174233|gb|AEE23487.1| integration host factor, alpha subunit [Glaciecola agarilytica
4H-3-7+YE-5]
Length = 98
Score = 91.4 bits (226), Expect = 4e-17, Method: Composition-based stats.
Identities = 28/95 (29%), Positives = 54/95 (56%), Gaps = 1/95 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ + + +K +N +D + +V EE+ +AL +G +V++ GFG+F +R+++ R
Sbjct: 4 TKAEMAEHLFEKL-GMNKRDAKDLVEAFFEEVREALESGEQVKLSGFGNFDLRQKSERPG 62
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDST 96
R P + I ++ + V FR G+ LK R+ + T
Sbjct: 63 RNPKTGEDIPIKARRVVTFRPGQKLKSRVENTKPT 97
>gi|229822881|ref|ZP_04448951.1| hypothetical protein GCWU000282_00171 [Catonella morbi ATCC
51271]
gi|229787694|gb|EEP23808.1| hypothetical protein GCWU000282_00171 [Catonella morbi ATCC
51271]
Length = 91
Score = 91.4 bits (226), Expect = 4e-17, Method: Composition-based stats.
Identities = 35/90 (38%), Positives = 51/90 (56%), Gaps = 1/90 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ L+ +A K L +DV V L E + + L+ G +V++ GFG+F VR+RAAR
Sbjct: 3 NKAELVEKVAAKT-NLTKKDVTATVEALFETIQETLSKGEKVQVIGFGTFEVRERAARKG 61
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P K I + VP F+AGK LK+ +
Sbjct: 62 RNPQTGKEIKIAASKVPGFKAGKALKDAVK 91
>gi|261493979|ref|ZP_05990487.1| DNA-binding protein HU [Mannheimia haemolytica serotype A2 str.
BOVINE]
gi|261494737|ref|ZP_05991216.1| DNA-binding protein HU [Mannheimia haemolytica serotype A2 str.
OVINE]
gi|261309554|gb|EEY10778.1| DNA-binding protein HU [Mannheimia haemolytica serotype A2 str.
OVINE]
gi|261310411|gb|EEY11606.1| DNA-binding protein HU [Mannheimia haemolytica serotype A2 str.
BOVINE]
Length = 90
Score = 91.4 bits (226), Expect = 4e-17, Method: Composition-based stats.
Identities = 30/91 (32%), Positives = 47/91 (51%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI IA L +D + + L+ ++ +L G V++ GFG+F V +R AR
Sbjct: 1 MNKTELIDAIAA-GANLTKKDAKAALEATLDAISASLKAGDAVQLIGFGTFKVNERKART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + I + VP F +GK LK+ +
Sbjct: 60 GRNPKTGEEIKIAAAKVPAFVSGKALKDLVK 90
>gi|256830230|ref|YP_003158958.1| histone family protein DNA-binding protein [Desulfomicrobium
baculatum DSM 4028]
gi|256579406|gb|ACU90542.1| histone family protein DNA-binding protein [Desulfomicrobium
baculatum DSM 4028]
Length = 90
Score = 91.4 bits (226), Expect = 4e-17, Method: Composition-based stats.
Identities = 26/91 (28%), Positives = 46/91 (50%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ L+ +A+K L + E+ + L+ + + L ++ + GFG+F V +R AR
Sbjct: 1 MTKAELVAKMAEK-AGLTKANAERALTEFLKAVQETLVTEKKMTLTGFGTFVVEERQART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + + + V FR GK LK+ +
Sbjct: 60 GRNPRTGEELKIPACKVVKFRPGKELKDAIK 90
>gi|170078570|ref|YP_001735208.1| DNA-binding protein HU [Synechococcus sp. PCC 7002]
gi|169886239|gb|ACA99952.1| DNA-binding protein HU [Synechococcus sp. PCC 7002]
Length = 92
Score = 91.4 bits (226), Expect = 4e-17, Method: Composition-based stats.
Identities = 29/90 (32%), Positives = 49/90 (54%), Gaps = 1/90 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K L+ +A+K ++ + + +++ +E + + +ANG +V + GFGSF R R AR
Sbjct: 1 MNKGELVDLVAEK-AGISKKQADSVISATVEAIMETVANGDKVTLVGFGSFEPRHRKARE 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P + + + VP F AGK KE +
Sbjct: 60 GRNPKTNEKMQIPATTVPAFSAGKQFKEMV 89
>gi|260903510|ref|ZP_05911905.1| integration host factor, beta subunit [Vibrio parahaemolyticus
AQ4037]
gi|308107614|gb|EFO45154.1| integration host factor, beta subunit [Vibrio parahaemolyticus
AQ4037]
Length = 82
Score = 91.4 bits (226), Expect = 4e-17, Method: Composition-based stats.
Identities = 34/80 (42%), Positives = 48/80 (60%)
Query: 12 KKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLARAPLAQKVIS 71
+ L+ ++VE V +LE M L +G R+EIRGFGSFS+ R R+ R P +
Sbjct: 1 AEQTHLSAKEVEDAVKDILEHMASTLESGDRIEIRGFGSFSLHYREPRVGRNPKTGDKVE 60
Query: 72 VEEKMVPFFRAGKNLKERLN 91
+E K VP F+ GK L+ER+N
Sbjct: 61 LEGKYVPHFKPGKELRERVN 80
>gi|259906948|ref|YP_002647304.1| DNA-binding protein HU-alpha [Erwinia pyrifoliae Ep1/96]
gi|224962570|emb|CAX54025.1| DNA-binding protein HU-alpha [Erwinia pyrifoliae Ep1/96]
gi|283476742|emb|CAY72577.1| DNA-binding protein HU-alpha [Erwinia pyrifoliae DSM 12163]
Length = 90
Score = 91.4 bits (226), Expect = 4e-17, Method: Composition-based stats.
Identities = 32/91 (35%), Positives = 47/91 (51%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI IA K L+ + + L +T++L G V++ GFG+F V +RA R+
Sbjct: 1 MNKTQLIDIIADK-ADLSKTQAKAALESTLTAITESLKEGDAVQLVGFGTFKVNQRAGRI 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P I + VP F +GK LKE +
Sbjct: 60 GRNPKTGNEIQIAASTVPAFTSGKALKEAVK 90
>gi|326386988|ref|ZP_08208598.1| integration host factor, alpha subunit [Novosphingobium
nitrogenifigens DSM 19370]
gi|326208169|gb|EGD58976.1| integration host factor, alpha subunit [Novosphingobium
nitrogenifigens DSM 19370]
Length = 93
Score = 91.4 bits (226), Expect = 4e-17, Method: Composition-based stats.
Identities = 29/90 (32%), Positives = 50/90 (55%), Gaps = 1/90 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M ++ L +I + L+ + ++V +L +M ALA G V+I GFG+F +R +A R+
Sbjct: 1 MTRADLAESI-NRRVGLSRAESLEMVEAILSQMCDALAEGENVKISGFGTFLLRDKAERI 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P + + + V FRA + LK+R+
Sbjct: 60 GRNPKTGVEVPITPRRVLTFRASQMLKDRI 89
>gi|206900402|ref|YP_002251223.1| non-specific DNA-binding protein [Dictyoglomus thermophilum
H-6-12]
gi|217967896|ref|YP_002353402.1| histone family protein DNA-binding protein [Dictyoglomus turgidum
DSM 6724]
gi|206739505|gb|ACI18563.1| non-specific DNA-binding protein [Dictyoglomus thermophilum
H-6-12]
gi|217336995|gb|ACK42788.1| histone family protein DNA-binding protein [Dictyoglomus turgidum
DSM 6724]
Length = 91
Score = 91.4 bits (226), Expect = 4e-17, Method: Composition-based stats.
Identities = 40/92 (43%), Positives = 57/92 (61%), Gaps = 1/92 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ I +A+K K+ ++ K+VN +LE +T+AL+ G V+ GFG+FSVRKRAAR
Sbjct: 1 MKKAEFIAKVAEK-AKITKKEATKVVNAVLETITEALSKGDTVQFVGFGTFSVRKRAARE 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P Q+ I + VP FR GK L+E +
Sbjct: 60 GRNPRTQQPIKIPATKVPVFRPGKELREAVKK 91
>gi|78187578|ref|YP_375621.1| histone-like DNA-binding protein [Chlorobium luteolum DSM 273]
gi|78167480|gb|ABB24578.1| Histone-like DNA-binding protein [Chlorobium luteolum DSM 273]
Length = 102
Score = 91.4 bits (226), Expect = 4e-17, Method: Composition-based stats.
Identities = 33/89 (37%), Positives = 51/89 (57%), Gaps = 1/89 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ L+ IA + L + E +V+ L E + +L G R+EIRGFGSF++R + R A
Sbjct: 6 TKADLVNVIAHRT-GLTKNETETVVDALFESIIDSLKAGRRIEIRGFGSFNIRYKNLRQA 64
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P + ++VE K VP F+ K K+ +
Sbjct: 65 RNPRTGEKVTVEPKNVPTFKISKEFKQAV 93
>gi|307547003|ref|YP_003899482.1| DNA-binding protein HU-beta [Halomonas elongata DSM 2581]
gi|307219027|emb|CBV44297.1| K03530 DNA-binding protein HU-beta [Halomonas elongata DSM 2581]
Length = 91
Score = 91.4 bits (226), Expect = 4e-17, Method: Composition-based stats.
Identities = 28/90 (31%), Positives = 54/90 (60%), Gaps = 1/90 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K L IA++ L+ +++N++L+E+T ++++G V + GFG+F+VR+RAAR
Sbjct: 1 MRKPELAAAIAER-ADLSKDKASQVLNVILDEITGSVSDGKDVSLIGFGTFTVRERAART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
+ P + +++ F+ GK LK+ +
Sbjct: 60 GKNPQTGEPLTIPASKTVAFKPGKGLKDAV 89
>gi|239996231|ref|ZP_04716755.1| integration host factor subunit alpha [Alteromonas macleodii ATCC
27126]
Length = 99
Score = 91.4 bits (226), Expect = 4e-17, Method: Composition-based stats.
Identities = 27/91 (29%), Positives = 51/91 (56%), Gaps = 1/91 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ + + +K +N +D + +V + EE+ AL +G +V++ GFG+F +R + R
Sbjct: 4 TKAEMAEHLFEKL-GINKRDAKDLVELFFEEIKGALESGEQVKLSGFGNFDLRDKNERPG 62
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P + I ++ + V FR G+ LK R+ +
Sbjct: 63 RNPKTGEDIPIKARRVVTFRPGQKLKSRVEN 93
>gi|315499784|ref|YP_004088587.1| histone family protein DNA-binding protein [Asticcacaulis
excentricus CB 48]
gi|315417796|gb|ADU14436.1| histone family protein DNA-binding protein [Asticcacaulis
excentricus CB 48]
Length = 92
Score = 91.4 bits (226), Expect = 4e-17, Method: Composition-based stats.
Identities = 29/90 (32%), Positives = 43/90 (47%), Gaps = 1/90 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ L+ IA + L + +K V+ + + AL G V + GFG+F KR A A
Sbjct: 3 TKAELVAAIADQ-AGLTKEQAKKAVDAFTDSVVDALKKGEEVRLVGFGTFLAVKREAGTA 61
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + +S + FR G+ LK LN
Sbjct: 62 RNPRTGETVSRPASVTARFRVGEGLKNALN 91
>gi|225011859|ref|ZP_03702297.1| histone family protein DNA-binding protein [Flavobacteria
bacterium MS024-2A]
gi|225004362|gb|EEG42334.1| histone family protein DNA-binding protein [Flavobacteria
bacterium MS024-2A]
Length = 90
Score = 91.4 bits (226), Expect = 4e-17, Method: Composition-based stats.
Identities = 33/91 (36%), Positives = 46/91 (50%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI +A + ++ +K + L + L GGRV + GFGS+SV KRAAR
Sbjct: 1 MNKTELIDAMAA-DAGISKAAAKKALESFLGSVGGTLKKGGRVSLVGFGSWSVSKRAARD 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P I + K V F+AG L +N
Sbjct: 60 GRNPQTGATIKIAAKNVVKFKAGAELSGSVN 90
>gi|307709231|ref|ZP_07645690.1| DNA-binding protein [Streptococcus mitis SK564]
gi|307620177|gb|EFN99294.1| DNA-binding protein [Streptococcus mitis SK564]
Length = 91
Score = 91.0 bits (225), Expect = 4e-17, Method: Composition-based stats.
Identities = 33/90 (36%), Positives = 49/90 (54%), Gaps = 1/90 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K LI +A+ +L +D V + + LA G +V++ GFG+F VR+RAAR
Sbjct: 3 NKQDLIAKVAEAT-ELTKKDSAAAVEAVFSAVADYLAAGEKVQLIGFGNFEVRERAARKG 61
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P K I++ VP F+AGK LK+ +
Sbjct: 62 RNPQTGKEITIAASKVPAFKAGKALKDAVK 91
>gi|313673034|ref|YP_004051145.1| histone family protein DNA-binding protein [Calditerrivibrio
nitroreducens DSM 19672]
gi|312939790|gb|ADR18982.1| histone family protein DNA-binding protein [Calditerrivibrio
nitroreducens DSM 19672]
Length = 90
Score = 91.0 bits (225), Expect = 4e-17, Method: Composition-based stats.
Identities = 34/91 (37%), Positives = 46/91 (50%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K LI IA K L + EK + E + +AL +G +V + GFG+FSV +R AR
Sbjct: 1 MNKKDLIEKIATK-AGLKKVEAEKALEAFEEAVVEALKSGDKVTLVGFGTFSVYERKART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P K I + K P F GK K+ +
Sbjct: 60 GRNPQTGKEIKIPAKKAPKFTPGKLFKDSVK 90
>gi|161870175|ref|YP_001599345.1| integration host factor subunit beta [Neisseria meningitidis
053442]
gi|161595728|gb|ABX73388.1| integration host factor beta-subunit [Neisseria meningitidis
053442]
Length = 95
Score = 91.0 bits (225), Expect = 4e-17, Method: Composition-based stats.
Identities = 38/81 (46%), Positives = 53/81 (65%)
Query: 11 AKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLARAPLAQKVI 70
AK L +DVE V +L++ MT++LA G R+EIRGFGSF + R AR+ R P + +
Sbjct: 7 AKNGTHLLAKDVEYSVKVLVDTMTRSLARGQRIEIRGFGSFDLNHRPARIGRNPKTGERV 66
Query: 71 SVEEKMVPFFRAGKNLKERLN 91
V EK VP F+ GK L+ER++
Sbjct: 67 EVPEKHVPHFKPGKELRERVD 87
>gi|148263975|ref|YP_001230681.1| histone family protein DNA-binding protein [Geobacter
uraniireducens Rf4]
gi|146397475|gb|ABQ26108.1| bacterial nucleoid protein Hbs [Geobacter uraniireducens Rf4]
Length = 91
Score = 91.0 bits (225), Expect = 4e-17, Method: Composition-based stats.
Identities = 33/92 (35%), Positives = 49/92 (53%), Gaps = 1/92 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ L+ +A+ + D EK V LE +T L G ++ + GFG+FS KRAAR
Sbjct: 1 MTKTDLVNAVAE-IAGITKVDAEKSVKAFLEAITDCLTKGDKLTLVGFGTFSTAKRAARK 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
+ P K I + + P F+AG LK +N+
Sbjct: 60 GQNPQTGKKIDIPASVNPKFKAGNTLKTLVNA 91
>gi|284924092|emb|CBG37191.1| DNA-binding protein HU-alpha [Escherichia coli 042]
Length = 90
Score = 91.0 bits (225), Expect = 5e-17, Method: Composition-based stats.
Identities = 32/91 (35%), Positives = 48/91 (52%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI IA+K +L+ + + L +T++L G V++ GFG+F V RA R
Sbjct: 1 MNKTQLIDVIAEK-AELSKTQAKAALESTLTAITESLKEGDAVQLVGFGTFKVNHRAERT 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P K I + VP F +GK LK+ +
Sbjct: 60 GRNPQTGKEIKIAAANVPAFVSGKALKDAVK 90
>gi|126657689|ref|ZP_01728843.1| Histone-like DNA-binding protein [Cyanothece sp. CCY0110]
gi|126620906|gb|EAZ91621.1| Histone-like DNA-binding protein [Cyanothece sp. CCY0110]
Length = 93
Score = 91.0 bits (225), Expect = 5e-17, Method: Composition-based stats.
Identities = 28/90 (31%), Positives = 47/90 (52%), Gaps = 1/90 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K L+ I+ K L ++ I++ L + + + +A+G +V + GFG+F R R R
Sbjct: 1 MNKEELVNMISAKTR-LTKKETSHILDALTDTIMETVADGDKVVLVGFGTFEPRDRKERK 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
P + I++ VP F AGK KE++
Sbjct: 60 GMNPQTGQPITIPATTVPAFSAGKLFKEKV 89
>gi|90021230|ref|YP_527057.1| integration host factor subunit alpha [Saccharophagus degradans
2-40]
gi|123396256|sp|Q21KD4|IHFA_SACD2 RecName: Full=Integration host factor subunit alpha;
Short=IHF-alpha
gi|89950830|gb|ABD80845.1| integration host factor, alpha subunit [Saccharophagus degradans
2-40]
Length = 101
Score = 91.0 bits (225), Expect = 5e-17, Method: Composition-based stats.
Identities = 26/97 (26%), Positives = 50/97 (51%), Gaps = 1/97 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ L + ++ N ++ +++V EE+ +L + +V++ GFG+F +R + R
Sbjct: 6 TKADLAEKLYEEL-GFNKREAKELVEHFFEEIRNSLEDNEQVKLSGFGNFDLRDKKQRPG 64
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDSTLS 98
R P + I + + V FR G+ LK R+ + T S
Sbjct: 65 RNPKTGEEIPITARRVVTFRPGQKLKARVEAYAGTKS 101
>gi|146282706|ref|YP_001172859.1| integration host factor subunit alpha [Pseudomonas stutzeri
A1501]
gi|166918518|sp|A4VM16|IHFA_PSEU5 RecName: Full=Integration host factor subunit alpha;
Short=IHF-alpha
gi|145570911|gb|ABP80017.1| integration host factor, alpha subunit [Pseudomonas stutzeri
A1501]
gi|327481045|gb|AEA84355.1| integration host factor subunit alpha [Pseudomonas stutzeri DSM
4166]
Length = 100
Score = 91.0 bits (225), Expect = 5e-17, Method: Composition-based stats.
Identities = 27/95 (28%), Positives = 52/95 (54%), Gaps = 1/95 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ + + ++ LN ++ +++V + EE+ QAL + +V++ GFG+F +R + R
Sbjct: 5 TKAEMAERLYEEL-GLNKREAKELVELFFEEIRQALEHNEQVKLSGFGNFDLRDKRQRPG 63
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDST 96
R P + I + + V FR G+ LK R+ + T
Sbjct: 64 RNPKTGEEIPITARRVVTFRPGQKLKARVEAYAGT 98
>gi|15804591|ref|NP_290632.1| transcriptional regulator HU subunit alpha [Escherichia coli
O157:H7 EDL933]
gi|15834177|ref|NP_312950.1| transcriptional regulator HU subunit alpha [Escherichia coli
O157:H7 str. Sakai]
gi|16131830|ref|NP_418428.1| HU, DNA-binding transcriptional regulator, alpha subunit
[Escherichia coli str. K-12 substr. MG1655]
gi|24115284|ref|NP_709794.1| transcriptional regulator HU subunit alpha [Shigella flexneri 2a
str. 301]
gi|26250771|ref|NP_756811.1| transcriptional regulator HU subunit alpha [Escherichia coli
CFT073]
gi|30064718|ref|NP_838889.1| transcriptional regulator HU subunit alpha [Shigella flexneri 2a
str. 2457T]
gi|74314494|ref|YP_312913.1| transcriptional regulator HU subunit alpha [Shigella sonnei
Ss046]
gi|82546342|ref|YP_410289.1| transcriptional regulator HU subunit alpha [Shigella boydii
Sb227]
gi|82778824|ref|YP_405173.1| transcriptional regulator HU subunit alpha [Shigella dysenteriae
Sd197]
gi|89110038|ref|AP_003818.1| HU, DNA-binding transcriptional regulator, alpha subunit
[Escherichia coli str. K-12 substr. W3110]
gi|91212793|ref|YP_542779.1| transcriptional regulator HU subunit alpha [Escherichia coli
UTI89]
gi|110644335|ref|YP_672065.1| transcriptional regulator HU subunit alpha [Escherichia coli 536]
gi|110807850|ref|YP_691370.1| transcriptional regulator HU subunit alpha [Shigella flexneri 5
str. 8401]
gi|117626262|ref|YP_859585.1| transcriptional regulator HU subunit alpha [Escherichia coli APEC
O1]
gi|157157657|ref|YP_001465495.1| transcriptional regulator HU subunit alpha [Escherichia coli
E24377A]
gi|157163469|ref|YP_001460787.1| transcriptional regulator HU subunit alpha [Escherichia coli HS]
gi|168752035|ref|ZP_02777057.1| DNA-binding protein HU-alpha [Escherichia coli O157:H7 str.
EC4113]
gi|168758604|ref|ZP_02783611.1| DNA-binding protein HU-alpha [Escherichia coli O157:H7 str.
EC4401]
gi|168764580|ref|ZP_02789587.1| DNA-binding protein HU-alpha [Escherichia coli O157:H7 str.
EC4501]
gi|168771472|ref|ZP_02796479.1| DNA-binding protein HU-alpha [Escherichia coli O157:H7 str.
EC4486]
gi|168777387|ref|ZP_02802394.1| DNA-binding protein HU-alpha [Escherichia coli O157:H7 str.
EC4196]
gi|168780385|ref|ZP_02805392.1| DNA-binding protein HU-alpha [Escherichia coli O157:H7 str.
EC4076]
gi|168790360|ref|ZP_02815367.1| DNA-binding protein HU-alpha [Escherichia coli O157:H7 str.
EC869]
gi|168798366|ref|ZP_02823373.1| DNA-binding protein HU-alpha [Escherichia coli O157:H7 str.
EC508]
gi|170021997|ref|YP_001726951.1| transcriptional regulator HU subunit alpha [Escherichia coli ATCC
8739]
gi|170083461|ref|YP_001732781.1| HU, DNA-binding transcriptional regulator, alpha subunit
[Escherichia coli str. K-12 substr. DH10B]
gi|170682013|ref|YP_001746384.1| transcriptional regulator HU subunit alpha [Escherichia coli
SMS-3-5]
gi|170770125|ref|ZP_02904578.1| DNA-binding protein HU-alpha [Escherichia albertii TW07627]
gi|187733664|ref|YP_001882686.1| transcriptional regulator HU subunit alpha [Shigella boydii CDC
3083-94]
gi|188494754|ref|ZP_03002024.1| DNA-binding protein HU-alpha [Escherichia coli 53638]
gi|191168661|ref|ZP_03030442.1| DNA-binding protein HU-alpha [Escherichia coli B7A]
gi|191174297|ref|ZP_03035805.1| DNA-binding protein HU-alpha [Escherichia coli F11]
gi|193066426|ref|ZP_03047473.1| DNA-binding protein HU-alpha [Escherichia coli E22]
gi|193067891|ref|ZP_03048857.1| DNA-binding protein HU-alpha [Escherichia coli E110019]
gi|194429963|ref|ZP_03062472.1| DNA-binding protein HU-alpha [Escherichia coli B171]
gi|194434756|ref|ZP_03067007.1| DNA-binding protein HU-alpha [Shigella dysenteriae 1012]
gi|194439785|ref|ZP_03071852.1| DNA-binding protein HU-alpha [Escherichia coli 101-1]
gi|195939626|ref|ZP_03085008.1| transcriptional regulator HU subunit alpha [Escherichia coli
O157:H7 str. EC4024]
gi|208808153|ref|ZP_03250490.1| DNA-binding protein HU-alpha [Escherichia coli O157:H7 str.
EC4206]
gi|208813268|ref|ZP_03254597.1| DNA-binding protein HU-alpha [Escherichia coli O157:H7 str.
EC4045]
gi|208820185|ref|ZP_03260505.1| DNA-binding protein HU-alpha [Escherichia coli O157:H7 str.
EC4042]
gi|209397488|ref|YP_002273516.1| DNA-binding protein HU-alpha [Escherichia coli O157:H7 str.
EC4115]
gi|209921479|ref|YP_002295563.1| transcriptional regulator HU subunit alpha [Escherichia coli
SE11]
gi|215489332|ref|YP_002331763.1| transcriptional regulator HU subunit alpha [Escherichia coli
O127:H6 str. E2348/69]
gi|217324933|ref|ZP_03441017.1| DNA-binding protein HU-alpha [Escherichia coli O157:H7 str.
TW14588]
gi|218551016|ref|YP_002384807.1| transcriptional regulator HU subunit alpha [Escherichia
fergusonii ATCC 35469]
gi|218556555|ref|YP_002389469.1| transcriptional regulator HU subunit alpha [Escherichia coli
IAI1]
gi|218561066|ref|YP_002393979.1| transcriptional regulator HU subunit alpha [Escherichia coli S88]
gi|218692281|ref|YP_002400493.1| transcriptional regulator HU subunit alpha [Escherichia coli
ED1a]
gi|218697708|ref|YP_002405375.1| transcriptional regulator HU subunit alpha [Escherichia coli
55989]
gi|218707619|ref|YP_002415138.1| transcriptional regulator HU subunit alpha [Escherichia coli
UMN026]
gi|227885470|ref|ZP_04003275.1| DNA-binding protein HU-alpha [Escherichia coli 83972]
gi|237702767|ref|ZP_04533248.1| transcriptional regulator HU subunit alpha [Escherichia sp.
3_2_53FAA]
gi|238903057|ref|YP_002928853.1| HU, DNA-binding transcriptional regulator, alpha subunit
[Escherichia coli BW2952]
gi|253775370|ref|YP_003038201.1| transcriptional regulator HU subunit alpha [Escherichia coli
'BL21-Gold(DE3)pLysS AG']
gi|254039257|ref|ZP_04873306.1| DNA-binding protein HU-alpha [Escherichia sp. 1_1_43]
gi|254163942|ref|YP_003047050.1| transcriptional regulator HU subunit alpha [Escherichia coli B
str. REL606]
gi|254795998|ref|YP_003080835.1| transcriptional regulator HU subunit alpha [Escherichia coli
O157:H7 str. TW14359]
gi|256021679|ref|ZP_05435544.1| transcriptional regulator HU subunit alpha [Shigella sp. D9]
gi|256026316|ref|ZP_05440181.1| transcriptional regulator HU subunit alpha [Escherichia sp.
4_1_40B]
gi|260846800|ref|YP_003224578.1| HU, DNA-binding transcriptional regulator, alpha subunit
[Escherichia coli O103:H2 str. 12009]
gi|260858110|ref|YP_003232001.1| HU, DNA-binding transcriptional regulator, alpha subunit
[Escherichia coli O26:H11 str. 11368]
gi|260870711|ref|YP_003237113.1| HU, DNA-binding transcriptional regulator, alpha subunit
[Escherichia coli O111:H- str. 11128]
gi|261227288|ref|ZP_05941569.1| HU, DNA-binding transcriptional regulator, alpha subunit
[Escherichia coli O157:H7 str. FRIK2000]
gi|261257035|ref|ZP_05949568.1| HU, DNA-binding transcriptional regulator, alpha subunit
[Escherichia coli O157:H7 str. FRIK966]
gi|291285415|ref|YP_003502233.1| DNA-binding protein HU-alpha [Escherichia coli O55:H7 str.
CB9615]
gi|293407617|ref|ZP_06651535.1| transcriptional regulator HU subunit beta [Escherichia coli
FVEC1412]
gi|293413436|ref|ZP_06656096.1| transcriptional regulator HU subunit beta [Escherichia coli B354]
gi|293417502|ref|ZP_06660125.1| DNA-binding protein HU-alpha [Escherichia coli B185]
gi|293474307|ref|ZP_06664716.1| transcriptional regulator HU subunit beta [Escherichia coli B088]
gi|298383365|ref|ZP_06992957.1| transcriptional regulator HU subunit beta [Escherichia coli
FVEC1302]
gi|300819812|ref|ZP_07099999.1| DNA-binding protein HU [Escherichia coli MS 107-1]
gi|300824619|ref|ZP_07104727.1| DNA-binding protein HU [Escherichia coli MS 119-7]
gi|300897585|ref|ZP_07115994.1| DNA-binding protein HU [Escherichia coli MS 198-1]
gi|300907554|ref|ZP_07125192.1| DNA-binding protein HU [Escherichia coli MS 84-1]
gi|300919418|ref|ZP_07135922.1| DNA-binding protein HU [Escherichia coli MS 115-1]
gi|300925869|ref|ZP_07141712.1| DNA-binding protein HU [Escherichia coli MS 182-1]
gi|300928819|ref|ZP_07144327.1| DNA-binding protein HU [Escherichia coli MS 187-1]
gi|300938775|ref|ZP_07153488.1| DNA-binding protein HU [Escherichia coli MS 21-1]
gi|300947393|ref|ZP_07161586.1| DNA-binding protein HU [Escherichia coli MS 116-1]
gi|300954769|ref|ZP_07167199.1| DNA-binding protein HU [Escherichia coli MS 175-1]
gi|300979674|ref|ZP_07174646.1| DNA-binding protein HU [Escherichia coli MS 45-1]
gi|300985441|ref|ZP_07177444.1| DNA-binding protein HU [Escherichia coli MS 200-1]
gi|301019441|ref|ZP_07183614.1| DNA-binding protein HU [Escherichia coli MS 69-1]
gi|301023370|ref|ZP_07187160.1| DNA-binding protein HU [Escherichia coli MS 196-1]
gi|301047735|ref|ZP_07194793.1| DNA-binding protein HU [Escherichia coli MS 185-1]
gi|301302187|ref|ZP_07208319.1| DNA-binding protein HU [Escherichia coli MS 124-1]
gi|301325708|ref|ZP_07219167.1| DNA-binding protein HU [Escherichia coli MS 78-1]
gi|301645744|ref|ZP_07245665.1| DNA-binding protein HU [Escherichia coli MS 146-1]
gi|306812015|ref|ZP_07446223.1| transcriptional regulator HU subunit alpha [Escherichia coli
NC101]
gi|307140692|ref|ZP_07500048.1| transcriptional regulator HU subunit alpha [Escherichia coli
H736]
gi|307315027|ref|ZP_07594613.1| histone family protein DNA-binding protein [Escherichia coli W]
gi|309783956|ref|ZP_07678601.1| DNA-binding protein HU-alpha [Shigella dysenteriae 1617]
gi|309797704|ref|ZP_07692090.1| DNA-binding protein HU [Escherichia coli MS 145-7]
gi|312965347|ref|ZP_07779580.1| DNA-binding protein HU-alpha [Escherichia coli 2362-75]
gi|312974214|ref|ZP_07788384.1| DNA-binding protein HU-alpha [Escherichia coli 1827-70]
gi|331644736|ref|ZP_08345854.1| DNA-binding protein HU-alpha (NS2) (HU-2) [Escherichia coli H736]
gi|331649853|ref|ZP_08350931.1| DNA-binding protein HU-alpha (NS2) (HU-2) [Escherichia coli M605]
gi|331655700|ref|ZP_08356690.1| DNA-binding protein HU-alpha (NS2) (HU-2) [Escherichia coli M718]
gi|331660560|ref|ZP_08361493.1| DNA-binding protein HU-alpha (NS2) (HU-2) [Escherichia coli
TA206]
gi|331665656|ref|ZP_08366552.1| DNA-binding protein HU-alpha (NS2) (HU-2) [Escherichia coli
TA143]
gi|331670854|ref|ZP_08371689.1| DNA-binding protein HU-alpha (NS2) (HU-2) [Escherichia coli
TA271]
gi|331675486|ref|ZP_08376235.1| DNA-binding protein HU-alpha (NS2) (HU-2) [Escherichia coli
TA280]
gi|331680123|ref|ZP_08380784.1| DNA-binding protein HU-alpha (NS2) (HU-2) [Escherichia coli H591]
gi|331685742|ref|ZP_08386324.1| DNA-binding protein HU-alpha (NS2) (HU-2) [Escherichia coli H299]
gi|332282922|ref|ZP_08395335.1| HU DNA-binding transcriptional regulator alpha subunit [Shigella
sp. D9]
gi|82581650|sp|P0ACF2|DBHA_ECO57 RecName: Full=DNA-binding protein HU-alpha; AltName: Full=HU-2;
AltName: Full=NS2
gi|82581651|sp|P0ACF1|DBHA_ECOL6 RecName: Full=DNA-binding protein HU-alpha; AltName: Full=HU-2;
AltName: Full=NS2
gi|82581652|sp|P0ACF0|DBHA_ECOLI RecName: Full=DNA-binding protein HU-alpha; AltName: Full=HU-2;
AltName: Full=NS2
gi|82581653|sp|P0ACF3|DBHA_SHIFL RecName: Full=DNA-binding protein HU-alpha; AltName: Full=HU-2;
AltName: Full=NS2
gi|34810779|pdb|1MUL|A Chain A, Crystal Structure Of The E. Coli Hu Alpha2 Protein
gi|134105078|pdb|2O97|A Chain A, Crystal Structure Of E. Coli Hu Heterodimer
gi|12518929|gb|AAG59197.1|AE005631_12 DNA-binding protein HU-alpha (HU-2) [Escherichia coli O157:H7
str. EDL933]
gi|26111202|gb|AAN83385.1|AE016770_185 DNA-binding protein HU-alpha [Escherichia coli CFT073]
gi|41765|emb|CAA29412.1| unnamed protein product [Escherichia coli]
gi|396339|gb|AAC43098.1| histonelike DNA-binding protein HU-alpha (NS2) (HU-2)
[Escherichia coli str. K-12 substr. MG1655]
gi|1790433|gb|AAC76974.1| HU, DNA-binding transcriptional regulator, alpha subunit
[Escherichia coli str. K-12 substr. MG1655]
gi|13364399|dbj|BAB38346.1| DNA-binding protein HU-alpha [Escherichia coli O157:H7 str.
Sakai]
gi|24054578|gb|AAN45501.1| DNA-binding protein HU-alpha (HU-2) [Shigella flexneri 2a str.
301]
gi|30042978|gb|AAP18700.1| DNA-binding protein HU-alpha (HU-2) [Shigella flexneri 2a str.
2457T]
gi|73857971|gb|AAZ90678.1| DNA-binding protein HU-alpha [Shigella sonnei Ss046]
gi|81242972|gb|ABB63682.1| DNA-binding protein HU-alpha [Shigella dysenteriae Sd197]
gi|81247753|gb|ABB68461.1| DNA-binding protein HU-alpha [Shigella boydii Sb227]
gi|85676069|dbj|BAE77319.1| HU, DNA-binding transcriptional regulator, alpha subunit
[Escherichia coli str. K12 substr. W3110]
gi|91074367|gb|ABE09248.1| DNA-binding protein HU-alpha (HU-2) [Escherichia coli UTI89]
gi|110345927|gb|ABG72164.1| DNA-binding protein HU-alpha [Escherichia coli 536]
gi|110617398|gb|ABF06065.1| DNA-binding protein HU-alpha (HU-2) [Shigella flexneri 5 str.
8401]
gi|115515386|gb|ABJ03461.1| DNA-binding protein HU-alpha [Escherichia coli APEC O1]
gi|157069149|gb|ABV08404.1| DNA-binding protein HU-alpha [Escherichia coli HS]
gi|157079687|gb|ABV19395.1| DNA-binding protein HU-alpha [Escherichia coli E24377A]
gi|169756925|gb|ACA79624.1| histone family protein DNA-binding protein [Escherichia coli ATCC
8739]
gi|169891296|gb|ACB05003.1| HU, DNA-binding transcriptional regulator, alpha subunit
[Escherichia coli str. K-12 substr. DH10B]
gi|170121007|gb|EDS89938.1| DNA-binding protein HU-alpha [Escherichia albertii TW07627]
gi|170519731|gb|ACB17909.1| DNA-binding protein HU-alpha [Escherichia coli SMS-3-5]
gi|187430656|gb|ACD09930.1| DNA-binding protein HU-alpha [Shigella boydii CDC 3083-94]
gi|187767348|gb|EDU31192.1| DNA-binding protein HU-alpha [Escherichia coli O157:H7 str.
EC4196]
gi|188014035|gb|EDU52157.1| DNA-binding protein HU-alpha [Escherichia coli O157:H7 str.
EC4113]
gi|188489953|gb|EDU65056.1| DNA-binding protein HU-alpha [Escherichia coli 53638]
gi|189001743|gb|EDU70729.1| DNA-binding protein HU-alpha [Escherichia coli O157:H7 str.
EC4076]
gi|189354599|gb|EDU73018.1| DNA-binding protein HU-alpha [Escherichia coli O157:H7 str.
EC4401]
gi|189359757|gb|EDU78176.1| DNA-binding protein HU-alpha [Escherichia coli O157:H7 str.
EC4486]
gi|189365455|gb|EDU83871.1| DNA-binding protein HU-alpha [Escherichia coli O157:H7 str.
EC4501]
gi|189370167|gb|EDU88583.1| DNA-binding protein HU-alpha [Escherichia coli O157:H7 str.
EC869]
gi|189379196|gb|EDU97612.1| DNA-binding protein HU-alpha [Escherichia coli O157:H7 str.
EC508]
gi|190901301|gb|EDV61069.1| DNA-binding protein HU-alpha [Escherichia coli B7A]
gi|190905429|gb|EDV65060.1| DNA-binding protein HU-alpha [Escherichia coli F11]
gi|192925950|gb|EDV80597.1| DNA-binding protein HU-alpha [Escherichia coli E22]
gi|192958866|gb|EDV89303.1| DNA-binding protein HU-alpha [Escherichia coli E110019]
gi|194411992|gb|EDX28305.1| DNA-binding protein HU-alpha [Escherichia coli B171]
gi|194416980|gb|EDX33098.1| DNA-binding protein HU-alpha [Shigella dysenteriae 1012]
gi|194421282|gb|EDX37302.1| DNA-binding protein HU-alpha [Escherichia coli 101-1]
gi|208727954|gb|EDZ77555.1| DNA-binding protein HU-alpha [Escherichia coli O157:H7 str.
EC4206]
gi|208734545|gb|EDZ83232.1| DNA-binding protein HU-alpha [Escherichia coli O157:H7 str.
EC4045]
gi|208740308|gb|EDZ87990.1| DNA-binding protein HU-alpha [Escherichia coli O157:H7 str.
EC4042]
gi|209158888|gb|ACI36321.1| DNA-binding protein HU-alpha [Escherichia coli O157:H7 str.
EC4115]
gi|209751678|gb|ACI74146.1| DNA-binding protein HU-alpha [Escherichia coli]
gi|209751680|gb|ACI74147.1| DNA-binding protein HU-alpha [Escherichia coli]
gi|209751682|gb|ACI74148.1| DNA-binding protein HU-alpha [Escherichia coli]
gi|209751684|gb|ACI74149.1| DNA-binding protein HU-alpha [Escherichia coli]
gi|209751686|gb|ACI74150.1| DNA-binding protein HU-alpha [Escherichia coli]
gi|209914738|dbj|BAG79812.1| DNA-binding protein [Escherichia coli SE11]
gi|215267404|emb|CAS11855.1| HU, DNA-binding transcriptional regulator, alpha subunit
[Escherichia coli O127:H6 str. E2348/69]
gi|217321154|gb|EEC29578.1| DNA-binding protein HU-alpha [Escherichia coli O157:H7 str.
TW14588]
gi|218354440|emb|CAV01252.1| HU, DNA-binding transcriptional regulator, alpha subunit
[Escherichia coli 55989]
gi|218358557|emb|CAQ91205.1| HU, DNA-binding transcriptional regulator, alpha subunit
[Escherichia fergusonii ATCC 35469]
gi|218363324|emb|CAR00974.1| HU, DNA-binding transcriptional regulator, alpha subunit
[Escherichia coli IAI1]
gi|218367835|emb|CAR05630.1| HU, DNA-binding transcriptional regulator, alpha subunit
[Escherichia coli S88]
gi|218429845|emb|CAR10671.1| HU, DNA-binding transcriptional regulator, alpha subunit
[Escherichia coli ED1a]
gi|218434716|emb|CAR15648.1| HU, DNA-binding transcriptional regulator, alpha subunit
[Escherichia coli UMN026]
gi|222035711|emb|CAP78456.1| DNA-binding protein HU-alpha [Escherichia coli LF82]
gi|226838492|gb|EEH70522.1| DNA-binding protein HU-alpha [Escherichia sp. 1_1_43]
gi|226903080|gb|EEH89339.1| transcriptional regulator HU subunit alpha [Escherichia sp.
3_2_53FAA]
gi|227837544|gb|EEJ48010.1| DNA-binding protein HU-alpha [Escherichia coli 83972]
gi|238861437|gb|ACR63435.1| HU, DNA-binding transcriptional regulator, alpha subunit
[Escherichia coli BW2952]
gi|242379531|emb|CAQ34347.1| transcriptional dual regulator HU-alpha (HU-2), subunit of HU
transcriptional dual regulator [Escherichia coli
BL21(DE3)]
gi|253326414|gb|ACT31016.1| histone family protein DNA-binding protein [Escherichia coli
'BL21-Gold(DE3)pLysS AG']
gi|253975843|gb|ACT41514.1| HU, DNA-binding transcriptional regulator, alpha subunit
[Escherichia coli B str. REL606]
gi|253979999|gb|ACT45669.1| HU, DNA-binding transcriptional regulator, alpha subunit
[Escherichia coli BL21(DE3)]
gi|254595398|gb|ACT74759.1| HU, DNA-binding transcriptional regulator, alpha subunit
[Escherichia coli O157:H7 str. TW14359]
gi|257756759|dbj|BAI28261.1| HU, DNA-binding transcriptional regulator, alpha subunit
[Escherichia coli O26:H11 str. 11368]
gi|257761947|dbj|BAI33444.1| HU, DNA-binding transcriptional regulator, alpha subunit
[Escherichia coli O103:H2 str. 12009]
gi|257767067|dbj|BAI38562.1| HU, DNA-binding transcriptional regulator, alpha subunit
[Escherichia coli O111:H- str. 11128]
gi|260451172|gb|ACX41594.1| histone family protein DNA-binding protein [Escherichia coli DH1]
gi|281181064|dbj|BAI57394.1| DNA-binding protein [Escherichia coli SE15]
gi|281603384|gb|ADA76368.1| DNA-binding protein HU-alpha [Shigella flexneri 2002017]
gi|290765288|gb|ADD59249.1| DNA-binding protein HU-alpha [Escherichia coli O55:H7 str.
CB9615]
gi|291321337|gb|EFE60778.1| transcriptional regulator HU subunit beta [Escherichia coli B088]
gi|291425385|gb|EFE98425.1| transcriptional regulator HU subunit beta [Escherichia coli
FVEC1412]
gi|291430829|gb|EFF03826.1| DNA-binding protein HU-alpha [Escherichia coli B185]
gi|291468031|gb|EFF10530.1| transcriptional regulator HU subunit beta [Escherichia coli B354]
gi|294490664|gb|ADE89420.1| DNA-binding protein HU-alpha [Escherichia coli IHE3034]
gi|298276244|gb|EFI17765.1| transcriptional regulator HU subunit beta [Escherichia coli
FVEC1302]
gi|299880890|gb|EFI89101.1| DNA-binding protein HU [Escherichia coli MS 196-1]
gi|300300380|gb|EFJ56765.1| DNA-binding protein HU [Escherichia coli MS 185-1]
gi|300306533|gb|EFJ61053.1| DNA-binding protein HU [Escherichia coli MS 200-1]
gi|300318268|gb|EFJ68052.1| DNA-binding protein HU [Escherichia coli MS 175-1]
gi|300358661|gb|EFJ74531.1| DNA-binding protein HU [Escherichia coli MS 198-1]
gi|300399256|gb|EFJ82794.1| DNA-binding protein HU [Escherichia coli MS 69-1]
gi|300400721|gb|EFJ84259.1| DNA-binding protein HU [Escherichia coli MS 84-1]
gi|300409458|gb|EFJ92996.1| DNA-binding protein HU [Escherichia coli MS 45-1]
gi|300413511|gb|EFJ96821.1| DNA-binding protein HU [Escherichia coli MS 115-1]
gi|300418059|gb|EFK01370.1| DNA-binding protein HU [Escherichia coli MS 182-1]
gi|300452997|gb|EFK16617.1| DNA-binding protein HU [Escherichia coli MS 116-1]
gi|300456285|gb|EFK19778.1| DNA-binding protein HU [Escherichia coli MS 21-1]
gi|300463200|gb|EFK26693.1| DNA-binding protein HU [Escherichia coli MS 187-1]
gi|300522868|gb|EFK43937.1| DNA-binding protein HU [Escherichia coli MS 119-7]
gi|300527633|gb|EFK48695.1| DNA-binding protein HU [Escherichia coli MS 107-1]
gi|300842350|gb|EFK70110.1| DNA-binding protein HU [Escherichia coli MS 124-1]
gi|300847497|gb|EFK75257.1| DNA-binding protein HU [Escherichia coli MS 78-1]
gi|301075993|gb|EFK90799.1| DNA-binding protein HU [Escherichia coli MS 146-1]
gi|305854620|gb|EFM55056.1| transcriptional regulator HU subunit alpha [Escherichia coli
NC101]
gi|306905532|gb|EFN36065.1| histone family protein DNA-binding protein [Escherichia coli W]
gi|307556143|gb|ADN48918.1| DNA-binding protein HU-alpha [Escherichia coli ABU 83972]
gi|307628383|gb|ADN72687.1| transcriptional regulator HU subunit alpha [Escherichia coli
UM146]
gi|308118716|gb|EFO55978.1| DNA-binding protein HU [Escherichia coli MS 145-7]
gi|308928327|gb|EFP73789.1| DNA-binding protein HU-alpha [Shigella dysenteriae 1617]
gi|309704416|emb|CBJ03765.1| DNA-binding protein HU-alpha [Escherichia coli ETEC H10407]
gi|310331381|gb|EFP98646.1| DNA-binding protein HU-alpha [Escherichia coli 1827-70]
gi|312290021|gb|EFR17908.1| DNA-binding protein HU-alpha [Escherichia coli 2362-75]
gi|312948574|gb|ADR29401.1| transcriptional regulator HU subunit alpha [Escherichia coli
O83:H1 str. NRG 857C]
gi|313648650|gb|EFS13090.1| DNA-binding protein HU-alpha [Shigella flexneri 2a str. 2457T]
gi|315063325|gb|ADT77652.1| HU, DNA-binding transcriptional regulator, alpha subunit
[Escherichia coli W]
gi|315138557|dbj|BAJ45716.1| DNA-binding protein HU-alpha [Escherichia coli DH1]
gi|315252732|gb|EFU32700.1| DNA-binding protein HU [Escherichia coli MS 85-1]
gi|315288345|gb|EFU47744.1| DNA-binding protein HU [Escherichia coli MS 110-3]
gi|315294343|gb|EFU53694.1| DNA-binding protein HU [Escherichia coli MS 153-1]
gi|315300743|gb|EFU59968.1| DNA-binding protein HU [Escherichia coli MS 16-3]
gi|315617364|gb|EFU97970.1| DNA-binding protein HU-alpha [Escherichia coli 3431]
gi|320172738|gb|EFW47972.1| DNA-binding protein HU-alpha [Shigella dysenteriae CDC 74-1112]
gi|320179537|gb|EFW54488.1| DNA-binding protein HU-alpha [Shigella boydii ATCC 9905]
gi|320185960|gb|EFW60708.1| DNA-binding protein HU-alpha [Shigella flexneri CDC 796-83]
gi|320190903|gb|EFW65553.1| DNA-binding protein HU-alpha [Escherichia coli O157:H7 str.
EC1212]
gi|320197105|gb|EFW71723.1| DNA-binding protein HU-alpha [Escherichia coli WV_060327]
gi|320200160|gb|EFW74749.1| DNA-binding protein HU-alpha [Escherichia coli EC4100B]
gi|320639091|gb|EFX08731.1| transcriptional regulator HU subunit alpha [Escherichia coli
O157:H7 str. G5101]
gi|320644485|gb|EFX13548.1| transcriptional regulator HU subunit alpha [Escherichia coli
O157:H- str. 493-89]
gi|320649804|gb|EFX18325.1| transcriptional regulator HU subunit alpha [Escherichia coli
O157:H- str. H 2687]
gi|320655137|gb|EFX23093.1| transcriptional regulator HU subunit alpha [Escherichia coli
O55:H7 str. 3256-97 TW 07815]
gi|320660781|gb|EFX28235.1| transcriptional regulator HU subunit alpha [Escherichia coli
O55:H7 str. USDA 5905]
gi|320665899|gb|EFX32930.1| transcriptional regulator HU subunit alpha [Escherichia coli
O157:H7 str. LSU-61]
gi|323155552|gb|EFZ41729.1| DNA-binding protein HU-alpha [Escherichia coli EPECa14]
gi|323161308|gb|EFZ47217.1| DNA-binding protein HU-alpha [Escherichia coli E128010]
gi|323167470|gb|EFZ53178.1| DNA-binding protein HU-alpha [Shigella sonnei 53G]
gi|323174488|gb|EFZ60113.1| DNA-binding protein HU-alpha [Escherichia coli LT-68]
gi|323177555|gb|EFZ63140.1| DNA-binding protein HU-alpha [Escherichia coli 1180]
gi|323182099|gb|EFZ67509.1| DNA-binding protein HU-alpha [Escherichia coli 1357]
gi|323190143|gb|EFZ75421.1| DNA-binding protein HU-alpha [Escherichia coli RN587/1]
gi|323380611|gb|ADX52879.1| histone family protein DNA-binding protein [Escherichia coli
KO11]
gi|323933958|gb|EGB30432.1| bacterial DNA-binding protein [Escherichia coli E1520]
gi|323938883|gb|EGB35103.1| DNA-binding protein [Escherichia coli E482]
gi|323943611|gb|EGB39719.1| bacterial DNA-binding protein [Escherichia coli H120]
gi|323948829|gb|EGB44726.1| DNA-binding protein [Escherichia coli H252]
gi|323953788|gb|EGB49595.1| DNA-binding protein [Escherichia coli H263]
gi|323958927|gb|EGB54602.1| DNA-binding protein [Escherichia coli H489]
gi|323963781|gb|EGB59280.1| DNA-binding protein [Escherichia coli M863]
gi|323969074|gb|EGB64382.1| DNA-binding protein [Escherichia coli TA007]
gi|323974200|gb|EGB69332.1| DNA-binding protein [Escherichia coli TW10509]
gi|324009499|gb|EGB78718.1| DNA-binding protein HU [Escherichia coli MS 57-2]
gi|324015254|gb|EGB84473.1| DNA-binding protein HU [Escherichia coli MS 60-1]
gi|324017347|gb|EGB86566.1| DNA-binding protein HU [Escherichia coli MS 117-3]
gi|324110912|gb|EGC04904.1| DNA-binding protein [Escherichia fergusonii B253]
gi|324115432|gb|EGC09377.1| DNA-binding protein [Escherichia coli E1167]
gi|325499268|gb|EGC97127.1| transcriptional regulator HU subunit alpha [Escherichia
fergusonii ECD227]
gi|326347149|gb|EGD70879.1| DNA-binding protein HU-alpha [Escherichia coli O157:H7 str. 1125]
gi|326347600|gb|EGD71322.1| DNA-binding protein HU-alpha [Escherichia coli O157:H7 str. 1044]
gi|330908315|gb|EGH36834.1| DNA-binding protein HU-alpha [Escherichia coli AA86]
gi|331036036|gb|EGI08273.1| DNA-binding protein HU-alpha (NS2) (HU-2) [Escherichia coli H736]
gi|331041319|gb|EGI13471.1| DNA-binding protein HU-alpha (NS2) (HU-2) [Escherichia coli M605]
gi|331046625|gb|EGI18712.1| DNA-binding protein HU-alpha (NS2) (HU-2) [Escherichia coli M718]
gi|331052343|gb|EGI24381.1| DNA-binding protein HU-alpha (NS2) (HU-2) [Escherichia coli
TA206]
gi|331057174|gb|EGI29166.1| DNA-binding protein HU-alpha (NS2) (HU-2) [Escherichia coli
TA143]
gi|331061942|gb|EGI33866.1| DNA-binding protein HU-alpha (NS2) (HU-2) [Escherichia coli
TA271]
gi|331067364|gb|EGI38770.1| DNA-binding protein HU-alpha (NS2) (HU-2) [Escherichia coli
TA280]
gi|331072278|gb|EGI43612.1| DNA-binding protein HU-alpha (NS2) (HU-2) [Escherichia coli H591]
gi|331077052|gb|EGI48268.1| DNA-binding protein HU-alpha (NS2) (HU-2) [Escherichia coli H299]
gi|332083889|gb|EGI89102.1| DNA-binding protein HU-alpha [Shigella boydii 5216-82]
gi|332085398|gb|EGI90568.1| DNA-binding protein HU-alpha [Shigella dysenteriae 155-74]
gi|332092305|gb|EGI97380.1| DNA-binding protein HU-alpha [Shigella boydii 3594-74]
gi|332105274|gb|EGJ08620.1| HU DNA-binding transcriptional regulator alpha subunit [Shigella
sp. D9]
gi|332345990|gb|AEE59324.1| DNA-binding protein HU-alpha [Escherichia coli UMNK88]
gi|332749197|gb|EGJ79619.1| DNA-binding protein HU-alpha [Shigella flexneri 2747-71]
gi|332751446|gb|EGJ81848.1| DNA-binding protein HU-alpha [Shigella flexneri 4343-70]
gi|332762844|gb|EGJ93103.1| DNA-binding protein HU-&alpha [Shigella flexneri 2930-71]
gi|332765544|gb|EGJ95758.1| DNA-binding protein HU-alpha [Shigella flexneri K-671]
gi|332998960|gb|EGK18550.1| DNA-binding protein HU-alpha [Shigella flexneri K-218]
gi|333010733|gb|EGK30161.1| DNA-binding protein HU-alpha [Shigella flexneri VA-6]
gi|333014358|gb|EGK33711.1| DNA-binding protein HU-alpha [Shigella flexneri K-304]
Length = 90
Score = 91.0 bits (225), Expect = 5e-17, Method: Composition-based stats.
Identities = 32/91 (35%), Positives = 48/91 (52%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI IA+K +L+ + + L +T++L G V++ GFG+F V RA R
Sbjct: 1 MNKTQLIDVIAEK-AELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERT 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P K I + VP F +GK LK+ +
Sbjct: 60 GRNPQTGKEIKIAAANVPAFVSGKALKDAVK 90
>gi|309972413|gb|ADO95614.1| DNA-binding protein HU-alpha [Haemophilus influenzae R2846]
Length = 90
Score = 91.0 bits (225), Expect = 5e-17, Method: Composition-based stats.
Identities = 32/91 (35%), Positives = 48/91 (52%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI IA +LN + + + L+ +T +L G V++ GFG+F V +RAAR
Sbjct: 1 MNKTDLIDAIANA-AELNKKQAKAALEATLDAITASLKKGEPVQLIGFGTFKVNERAART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P I + VP F +GK LK+ +
Sbjct: 60 GRNPQTGAEIQIAASKVPAFVSGKALKDAIK 90
>gi|291279359|ref|YP_003496194.1| DNA-binding protein HU [Deferribacter desulfuricans SSM1]
gi|290754061|dbj|BAI80438.1| DNA-binding protein HU [Deferribacter desulfuricans SSM1]
Length = 90
Score = 91.0 bits (225), Expect = 5e-17, Method: Composition-based stats.
Identities = 32/91 (35%), Positives = 45/91 (49%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K LI IA K L + E+ + E + +AL G +V + GFG+FSV +R R
Sbjct: 1 MNKKELIEKIASK-AGLKKSEAERALAAFEEAVIEALKAGDKVTLVGFGTFSVSERKERK 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + I + P F AGK LK+ +
Sbjct: 60 GRNPQTGEEIIIPATKTPKFSAGKLLKDSVK 90
>gi|78486002|ref|YP_391927.1| integration host factor, alpha subunit [Thiomicrospira crunogena
XCL-2]
gi|123755188|sp|Q31F20|IHFA_THICR RecName: Full=Integration host factor subunit alpha;
Short=IHF-alpha
gi|78364288|gb|ABB42253.1| Histone-like DNA-binding protein [Thiomicrospira crunogena XCL-2]
Length = 97
Score = 91.0 bits (225), Expect = 5e-17, Method: Composition-based stats.
Identities = 21/91 (23%), Positives = 53/91 (58%), Gaps = 1/91 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ + T++ K N ++ +++V +EM++ L G ++++ GFG+F ++ ++AR
Sbjct: 4 TKADIAETLSDKF-GFNKRESKELVEQFYDEMSEVLVKGEQIKLSGFGNFELKDKSARPG 62
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P + + + + V F+ G+ L+ ++++
Sbjct: 63 RNPRTGEDVPISARRVVTFKPGQKLRAQIDN 93
>gi|85711630|ref|ZP_01042687.1| Bacterial nucleoid DNA-binding protein, IHF alpha subunit
[Idiomarina baltica OS145]
gi|85694490|gb|EAQ32431.1| Bacterial nucleoid DNA-binding protein, IHF alpha subunit
[Idiomarina baltica OS145]
Length = 98
Score = 91.0 bits (225), Expect = 5e-17, Method: Composition-based stats.
Identities = 25/93 (26%), Positives = 45/93 (48%), Gaps = 1/93 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ L + K ++ QD + +V EE+ L +G V++ GFG+F +R + R
Sbjct: 4 TKAELAEVLFDKY-GVSKQDAKDLVEAFFEEIRSVLESGEMVKLSGFGNFELRTKNQRPG 62
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLNSPD 94
R P + I + + V F+ G+ K R+ +
Sbjct: 63 RNPKTGEDIPISARRVVSFKPGQKFKSRVENTK 95
>gi|117924422|ref|YP_865039.1| HU family DNA-binding protein [Magnetococcus sp. MC-1]
gi|117608178|gb|ABK43633.1| HU family DNA-binding protein [Magnetococcus sp. MC-1]
Length = 91
Score = 91.0 bits (225), Expect = 5e-17, Method: Composition-based stats.
Identities = 33/91 (36%), Positives = 47/91 (51%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M + + T+A L+ D +K + + ALA G V++ GFG+FSV +RAAR
Sbjct: 1 MNLTEMKKTVADAT-GLSQADADKAIKASFAAIQDALAGGATVQLPGFGTFSVGERAART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P I + F+AGKNLK+ LN
Sbjct: 60 GRNPQTGAEIQIAASKSVKFKAGKNLKDALN 90
>gi|157368539|ref|YP_001476528.1| transcriptional regulator HU subunit alpha [Serratia
proteamaculans 568]
gi|157320303|gb|ABV39400.1| histone family protein DNA-binding protein [Serratia
proteamaculans 568]
Length = 90
Score = 91.0 bits (225), Expect = 5e-17, Method: Composition-based stats.
Identities = 31/91 (34%), Positives = 45/91 (49%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI IA K L+ + + L +T++L G V++ GFG+F V R R
Sbjct: 1 MNKTQLIDVIADK-ADLSKAQAKLALESTLAAITESLKEGDAVQLVGFGTFKVNHRNERT 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P K I + VP F +GK LK+ +
Sbjct: 60 GRNPQTGKEIKIAAANVPAFVSGKALKDAVK 90
>gi|146307010|ref|YP_001187475.1| integration host factor subunit alpha [Pseudomonas mendocina ymp]
gi|166918516|sp|A4XTS7|IHFA_PSEMY RecName: Full=Integration host factor subunit alpha;
Short=IHF-alpha
gi|145575211|gb|ABP84743.1| integration host factor, alpha subunit [Pseudomonas mendocina ymp]
Length = 100
Score = 91.0 bits (225), Expect = 5e-17, Method: Composition-based stats.
Identities = 28/97 (28%), Positives = 52/97 (53%), Gaps = 1/97 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ + + ++ LN ++ +++V + EE+ QAL +V++ GFG+F +R + R
Sbjct: 5 TKAEMAERLYEEL-GLNKREAKELVELFFEEIRQALELNEQVKLSGFGNFDLRDKRQRPG 63
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDSTLS 98
R P + I + + V FR G+ LK R+ + T S
Sbjct: 64 RNPKTGEEIPITARRVVTFRPGQKLKARVEAYAGTKS 100
>gi|16762287|ref|NP_457904.1| transcriptional regulator HU subunit alpha [Salmonella enterica
subsp. enterica serovar Typhi str. CT18]
gi|16767424|ref|NP_463039.1| transcriptional regulator HU subunit alpha [Salmonella enterica
subsp. enterica serovar Typhimurium str. LT2]
gi|29143775|ref|NP_807117.1| transcriptional regulator HU subunit alpha [Salmonella enterica
subsp. enterica serovar Typhi str. Ty2]
gi|56415996|ref|YP_153071.1| transcriptional regulator HU subunit alpha [Salmonella enterica
subsp. enterica serovar Paratyphi A str. ATCC 9150]
gi|62182621|ref|YP_219038.1| transcriptional regulator HU subunit alpha [Salmonella enterica
subsp. enterica serovar Choleraesuis str. SC-B67]
gi|157147203|ref|YP_001454522.1| transcriptional regulator HU subunit alpha [Citrobacter koseri
ATCC BAA-895]
gi|161505342|ref|YP_001572454.1| transcriptional regulator HU subunit alpha [Salmonella enterica
subsp. arizonae serovar 62:z4,z23:-- str. RSK2980]
gi|161617309|ref|YP_001591274.1| transcriptional regulator HU subunit alpha [Salmonella enterica
subsp. enterica serovar Paratyphi B str. SPB7]
gi|167553826|ref|ZP_02347570.1| DNA-binding protein HU-alpha [Salmonella enterica subsp. enterica
serovar Saintpaul str. SARA29]
gi|168234408|ref|ZP_02659466.1| DNA-binding protein HU-alpha [Salmonella enterica subsp. enterica
serovar Kentucky str. CDC 191]
gi|168239596|ref|ZP_02664654.1| DNA-binding protein HU-alpha [Salmonella enterica subsp. enterica
serovar Schwarzengrund str. SL480]
gi|168245126|ref|ZP_02670058.1| DNA-binding protein HU-alpha [Salmonella enterica subsp. enterica
serovar Heidelberg str. SL486]
gi|168264574|ref|ZP_02686547.1| DNA-binding protein HU-alpha [Salmonella enterica subsp. enterica
serovar Hadar str. RI_05P066]
gi|168467898|ref|ZP_02701735.1| DNA-binding protein HU-alpha [Salmonella enterica subsp. enterica
serovar Newport str. SL317]
gi|168823116|ref|ZP_02835116.1| DNA-binding protein HU-alpha [Salmonella enterica subsp. enterica
serovar Weltevreden str. HI_N05-537]
gi|194445718|ref|YP_002043418.1| transcriptional regulator HU subunit alpha [Salmonella enterica
subsp. enterica serovar Newport str. SL254]
gi|194450276|ref|YP_002048155.1| transcriptional regulator HU subunit alpha [Salmonella enterica
subsp. enterica serovar Heidelberg str. SL476]
gi|194472167|ref|ZP_03078151.1| DNA-binding protein HU-alpha [Salmonella enterica subsp. enterica
serovar Kentucky str. CVM29188]
gi|194737577|ref|YP_002117071.1| transcriptional regulator HU subunit alpha [Salmonella enterica
subsp. enterica serovar Schwarzengrund str. CVM19633]
gi|197249995|ref|YP_002149078.1| transcriptional regulator HU subunit alpha [Salmonella enterica
subsp. enterica serovar Agona str. SL483]
gi|197265623|ref|ZP_03165697.1| DNA-binding protein HU-alpha [Salmonella enterica subsp. enterica
serovar Saintpaul str. SARA23]
gi|197364923|ref|YP_002144560.1| transcriptional regulator HU subunit alpha [Salmonella enterica
subsp. enterica serovar Paratyphi A str. AKU_12601]
gi|198243874|ref|YP_002218086.1| transcriptional regulator HU subunit alpha [Salmonella enterica
subsp. enterica serovar Dublin str. CT_02021853]
gi|200387831|ref|ZP_03214443.1| DNA-binding protein HU-alpha [Salmonella enterica subsp. enterica
serovar Virchow str. SL491]
gi|204931262|ref|ZP_03222022.1| DNA-binding protein HU-alpha [Salmonella enterica subsp. enterica
serovar Javiana str. GA_MM04042433]
gi|205354428|ref|YP_002228229.1| transcriptional regulator HU subunit alpha [Salmonella enterica
subsp. enterica serovar Gallinarum str. 287/91]
gi|207859348|ref|YP_002245999.1| transcriptional regulator HU subunit alpha [Salmonella enterica
subsp. enterica serovar Enteritidis str. P125109]
gi|213051532|ref|ZP_03344410.1| transcriptional regulator HU subunit alpha [Salmonella enterica
subsp. enterica serovar Typhi str. E00-7866]
gi|213420368|ref|ZP_03353434.1| transcriptional regulator HU subunit alpha [Salmonella enterica
subsp. enterica serovar Typhi str. E01-6750]
gi|213428479|ref|ZP_03361229.1| transcriptional regulator HU subunit alpha [Salmonella enterica
subsp. enterica serovar Typhi str. E02-1180]
gi|213586806|ref|ZP_03368632.1| transcriptional regulator HU subunit alpha [Salmonella enterica
subsp. enterica serovar Typhi str. E98-0664]
gi|213609700|ref|ZP_03369526.1| transcriptional regulator HU subunit alpha [Salmonella enterica
subsp. enterica serovar Typhi str. E98-2068]
gi|213647192|ref|ZP_03377245.1| transcriptional regulator HU subunit alpha [Salmonella enterica
subsp. enterica serovar Typhi str. J185]
gi|213855082|ref|ZP_03383322.1| transcriptional regulator HU subunit alpha [Salmonella enterica
subsp. enterica serovar Typhi str. M223]
gi|224585710|ref|YP_002639509.1| transcriptional regulator HU subunit alpha [Salmonella enterica
subsp. enterica serovar Paratyphi C strain RKS4594]
gi|237727864|ref|ZP_04558345.1| transcriptional regulator HU subunit alpha [Citrobacter sp. 30_2]
gi|238913748|ref|ZP_04657585.1| transcriptional regulator HU subunit alpha [Salmonella enterica
subsp. enterica serovar Tennessee str. CDC07-0191]
gi|283787327|ref|YP_003367192.1| DNA-binding protein HU-alpha [Citrobacter rodentium ICC168]
gi|283836739|ref|ZP_06356480.1| DNA-binding protein HU-beta [Citrobacter youngae ATCC 29220]
gi|289804949|ref|ZP_06535578.1| transcriptional regulator HU subunit alpha [Salmonella enterica
subsp. enterica serovar Typhi str. AG3]
gi|289826727|ref|ZP_06545692.1| transcriptional regulator HU subunit alpha [Salmonella enterica
subsp. enterica serovar Typhi str. E98-3139]
gi|60392169|sp|P0A1R6|DBHA_SALTY RecName: Full=DNA-binding protein HU-alpha; AltName: Full=HU-2;
AltName: Full=NS2
gi|60392170|sp|P0A1R7|DBHA_SALTI RecName: Full=DNA-binding protein HU-alpha; AltName: Full=HU-2;
AltName: Full=NS2
gi|25294362|pir||AH0931 histone like DNA-binding protein HU-alpha (NS2) (HU-2) [imported]
- Salmonella enterica subsp. enterica serovar Typhi
(strain CT18)
gi|154139|gb|AAA27147.1| histone-like protein [Salmonella enterica subsp. enterica serovar
Typhimurium]
gi|6960343|gb|AAF33503.1| Salmonella typhimurium DNA-binding protein HU-2 (HUPA)
(SW:P15148); contains similarity to Pfam domain PF00216
(BAC_DBA_binding), Score=182.9, E=1.7e-51, N=1
[Salmonella enterica subsp. enterica serovar
Typhimurium str. LT2]
gi|16422729|gb|AAL22998.1| DNA-binding protein HU-alpha [Salmonella enterica subsp. enterica
serovar Typhimurium str. LT2]
gi|16504591|emb|CAD09474.1| histone like DNA-binding protein HU-alpha (NS2) (HU-2)
[Salmonella enterica subsp. enterica serovar Typhi]
gi|29139410|gb|AAO70977.1| histone like DNA-binding protein HU-alpha [Salmonella enterica
subsp. enterica serovar Typhi str. Ty2]
gi|56130253|gb|AAV79759.1| histone like DNA-binding protein HU-alpha (NS2) (HU-2)
[Salmonella enterica subsp. enterica serovar Paratyphi
A str. ATCC 9150]
gi|62130254|gb|AAX67957.1| DNA-binding protein HU-alpha (HU-2) [Salmonella enterica subsp.
enterica serovar Choleraesuis str. SC-B67]
gi|157084408|gb|ABV14086.1| hypothetical protein CKO_02986 [Citrobacter koseri ATCC BAA-895]
gi|160866689|gb|ABX23312.1| hypothetical protein SARI_03487 [Salmonella enterica subsp.
arizonae serovar 62:z4,z23:--]
gi|161366673|gb|ABX70441.1| hypothetical protein SPAB_05160 [Salmonella enterica subsp.
enterica serovar Paratyphi B str. SPB7]
gi|194404381|gb|ACF64603.1| DNA-binding protein HU-alpha [Salmonella enterica subsp. enterica
serovar Newport str. SL254]
gi|194408580|gb|ACF68799.1| DNA-binding protein HU-alpha [Salmonella enterica subsp. enterica
serovar Heidelberg str. SL476]
gi|194458531|gb|EDX47370.1| DNA-binding protein HU-alpha [Salmonella enterica subsp. enterica
serovar Kentucky str. CVM29188]
gi|194713079|gb|ACF92300.1| DNA-binding protein HU-alpha [Salmonella enterica subsp. enterica
serovar Schwarzengrund str. CVM19633]
gi|195629006|gb|EDX48398.1| DNA-binding protein HU-alpha [Salmonella enterica subsp. enterica
serovar Newport str. SL317]
gi|197096400|emb|CAR62005.1| histone like DNA-binding protein HU-alpha (NS2) (HU-2)
[Salmonella enterica subsp. enterica serovar Paratyphi
A str. AKU_12601]
gi|197213698|gb|ACH51095.1| DNA-binding protein HU-alpha [Salmonella enterica subsp. enterica
serovar Agona str. SL483]
gi|197243878|gb|EDY26498.1| DNA-binding protein HU-alpha [Salmonella enterica subsp. enterica
serovar Saintpaul str. SARA23]
gi|197287722|gb|EDY27113.1| DNA-binding protein HU-alpha [Salmonella enterica subsp. enterica
serovar Schwarzengrund str. SL480]
gi|197938390|gb|ACH75723.1| DNA-binding protein HU-alpha [Salmonella enterica subsp. enterica
serovar Dublin str. CT_02021853]
gi|199604929|gb|EDZ03474.1| DNA-binding protein HU-alpha [Salmonella enterica subsp. enterica
serovar Virchow str. SL491]
gi|204319877|gb|EDZ05084.1| DNA-binding protein HU-alpha [Salmonella enterica subsp. enterica
serovar Javiana str. GA_MM04042433]
gi|205274209|emb|CAR39227.1| histone like DNA-binding protein HU-alpha (NS2) (HU-2)
[Salmonella enterica subsp. enterica serovar Gallinarum
str. 287/91]
gi|205321830|gb|EDZ09669.1| DNA-binding protein HU-alpha [Salmonella enterica subsp. enterica
serovar Saintpaul str. SARA29]
gi|205331654|gb|EDZ18418.1| DNA-binding protein HU-alpha [Salmonella enterica subsp. enterica
serovar Kentucky str. CDC 191]
gi|205336108|gb|EDZ22872.1| DNA-binding protein HU-alpha [Salmonella enterica subsp. enterica
serovar Heidelberg str. SL486]
gi|205340578|gb|EDZ27342.1| DNA-binding protein HU-alpha [Salmonella enterica subsp. enterica
serovar Weltevreden str. HI_N05-537]
gi|205346968|gb|EDZ33599.1| DNA-binding protein HU-alpha [Salmonella enterica subsp. enterica
serovar Hadar str. RI_05P066]
gi|206711151|emb|CAR35525.1| histone like DNA-binding protein HU-alpha (NS2) (HU-2)
[Salmonella enterica subsp. enterica serovar
Enteritidis str. P125109]
gi|224470238|gb|ACN48068.1| histone like DNA-binding protein HU-alpha (NS2) (HU-2)
[Salmonella enterica subsp. enterica serovar Paratyphi
C strain RKS4594]
gi|226910421|gb|EEH96339.1| transcriptional regulator HU subunit alpha [Citrobacter sp. 30_2]
gi|261249274|emb|CBG27136.1| histone like DNA-binding protein HU-alpha (NS2) (HU-2)
[Salmonella enterica subsp. enterica serovar
Typhimurium str. D23580]
gi|267996471|gb|ACY91356.1| transcriptional regulator HU subunit alpha [Salmonella enterica
subsp. enterica serovar Typhimurium str. 14028S]
gi|282950781|emb|CBG90457.1| DNA-binding protein HU-alpha [Citrobacter rodentium ICC168]
gi|291067290|gb|EFE05399.1| DNA-binding protein HU-beta [Citrobacter youngae ATCC 29220]
gi|301160666|emb|CBW20197.1| histone like DNA-binding protein HU-alpha (NS2) (HU-2)
[Salmonella enterica subsp. enterica serovar
Typhimurium str. SL1344]
gi|312915276|dbj|BAJ39250.1| transcriptional regulator HU subunit alpha [Salmonella enterica
subsp. enterica serovar Typhimurium str. T000240]
gi|321223370|gb|EFX48437.1| DNA-binding protein HU-alpha [Salmonella enterica subsp. enterica
serovar Typhimurium str. TN061786]
gi|322616279|gb|EFY13189.1| transcriptional regulator HU subunit alpha [Salmonella enterica
subsp. enterica serovar Montevideo str. 315996572]
gi|322617278|gb|EFY14180.1| transcriptional regulator HU subunit alpha [Salmonella enterica
subsp. enterica serovar Montevideo str. 495297-1]
gi|322625950|gb|EFY22765.1| transcriptional regulator HU subunit alpha [Salmonella enterica
subsp. enterica serovar Montevideo str. 495297-3]
gi|322626652|gb|EFY23454.1| transcriptional regulator HU subunit alpha [Salmonella enterica
subsp. enterica serovar Montevideo str. 495297-4]
gi|322631487|gb|EFY28244.1| transcriptional regulator HU subunit alpha [Salmonella enterica
subsp. enterica serovar Montevideo str. 515920-1]
gi|322635200|gb|EFY31918.1| transcriptional regulator HU subunit alpha [Salmonella enterica
subsp. enterica serovar Montevideo str. 515920-2]
gi|322642595|gb|EFY39191.1| transcriptional regulator HU subunit alpha [Salmonella enterica
subsp. enterica serovar Montevideo str. 531954]
gi|322646806|gb|EFY43310.1| transcriptional regulator HU subunit alpha [Salmonella enterica
subsp. enterica serovar Montevideo str.
NC_MB110209-0054]
gi|322650804|gb|EFY47197.1| transcriptional regulator HU subunit alpha [Salmonella enterica
subsp. enterica serovar Montevideo str. OH_2009072675]
gi|322655896|gb|EFY52197.1| transcriptional regulator HU subunit alpha [Salmonella enterica
subsp. enterica serovar Montevideo str.
CASC_09SCPH15965]
gi|322657295|gb|EFY53574.1| transcriptional regulator HU subunit alpha [Salmonella enterica
subsp. enterica serovar Montevideo str. 19N]
gi|322665557|gb|EFY61742.1| transcriptional regulator HU subunit alpha [Salmonella enterica
subsp. enterica serovar Montevideo str. 81038-01]
gi|322669740|gb|EFY65885.1| transcriptional regulator HU subunit alpha [Salmonella enterica
subsp. enterica serovar Montevideo str. MD_MDA09249507]
gi|322670981|gb|EFY67113.1| transcriptional regulator HU subunit alpha [Salmonella enterica
subsp. enterica serovar Montevideo str. 414877]
gi|322679195|gb|EFY75248.1| transcriptional regulator HU subunit alpha [Salmonella enterica
subsp. enterica serovar Montevideo str. 366867]
gi|322679353|gb|EFY75400.1| transcriptional regulator HU subunit alpha [Salmonella enterica
subsp. enterica serovar Montevideo str. 413180]
gi|322688120|gb|EFY84084.1| transcriptional regulator HU subunit alpha [Salmonella enterica
subsp. enterica serovar Montevideo str. 446600]
gi|322717118|gb|EFZ08689.1| transcriptional regulator HU subunit alpha [Salmonella enterica
subsp. enterica serovar Choleraesuis str. A50]
gi|323132506|gb|ADX19936.1| transcriptional regulator HU subunit alpha [Salmonella enterica
subsp. enterica serovar Typhimurium str. 4/74]
gi|323193388|gb|EFZ78598.1| transcriptional regulator HU subunit alpha [Salmonella enterica
subsp. enterica serovar Montevideo str. 609458-1]
gi|323200692|gb|EFZ85765.1| transcriptional regulator HU subunit alpha [Salmonella enterica
subsp. enterica serovar Montevideo str. 556150-1]
gi|323202181|gb|EFZ87237.1| transcriptional regulator HU subunit alpha [Salmonella enterica
subsp. enterica serovar Montevideo str. 609460]
gi|323209292|gb|EFZ94227.1| transcriptional regulator HU subunit alpha [Salmonella enterica
subsp. enterica serovar Montevideo str. 507440-20]
gi|323211617|gb|EFZ96454.1| transcriptional regulator HU subunit alpha [Salmonella enterica
subsp. enterica serovar Montevideo str. 556152]
gi|323218045|gb|EGA02758.1| transcriptional regulator HU subunit alpha [Salmonella enterica
subsp. enterica serovar Montevideo str. MB101509-0077]
gi|323221334|gb|EGA05756.1| transcriptional regulator HU subunit alpha [Salmonella enterica
subsp. enterica serovar Montevideo str. MB102109-0047]
gi|323225739|gb|EGA09960.1| transcriptional regulator HU subunit alpha [Salmonella enterica
subsp. enterica serovar Montevideo str. MB110209-0055]
gi|323230973|gb|EGA15090.1| transcriptional regulator HU subunit alpha [Salmonella enterica
subsp. enterica serovar Montevideo str. MB111609-0052]
gi|323235755|gb|EGA19837.1| transcriptional regulator HU subunit alpha [Salmonella enterica
subsp. enterica serovar Montevideo str. 2009083312]
gi|323240069|gb|EGA24115.1| transcriptional regulator HU subunit alpha [Salmonella enterica
subsp. enterica serovar Montevideo str. 2009085258]
gi|323242598|gb|EGA26620.1| transcriptional regulator HU subunit alpha [Salmonella enterica
subsp. enterica serovar Montevideo str. 315731156]
gi|323249694|gb|EGA33601.1| transcriptional regulator HU subunit alpha [Salmonella enterica
subsp. enterica serovar Montevideo str. IA_2009159199]
gi|323252577|gb|EGA36418.1| transcriptional regulator HU subunit alpha [Salmonella enterica
subsp. enterica serovar Montevideo str. IA_2010008282]
gi|323256929|gb|EGA40641.1| transcriptional regulator HU subunit alpha [Salmonella enterica
subsp. enterica serovar Montevideo str. IA_2010008283]
gi|323262048|gb|EGA45612.1| transcriptional regulator HU subunit alpha [Salmonella enterica
subsp. enterica serovar Montevideo str. IA_2010008284]
gi|323263946|gb|EGA47460.1| transcriptional regulator HU subunit alpha [Salmonella enterica
subsp. enterica serovar Montevideo str. IA_2010008285]
gi|323268441|gb|EGA51911.1| transcriptional regulator HU subunit alpha [Salmonella enterica
subsp. enterica serovar Montevideo str. IA_2010008287]
gi|326625879|gb|EGE32224.1| transcriptional regulator HU subunit alpha [Salmonella enterica
subsp. enterica serovar Dublin str. 3246]
gi|326629560|gb|EGE35903.1| transcriptional regulator HU subunit alpha [Salmonella enterica
subsp. enterica serovar Gallinarum str. 9]
gi|332990989|gb|AEF09972.1| transcriptional regulator HU subunit alpha [Salmonella enterica
subsp. enterica serovar Typhimurium str. UK-1]
Length = 90
Score = 91.0 bits (225), Expect = 5e-17, Method: Composition-based stats.
Identities = 32/91 (35%), Positives = 47/91 (51%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI IA K +L+ + + L +T++L G V++ GFG+F V RA R
Sbjct: 1 MNKTQLIDVIADK-AELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERT 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P K I + VP F +GK LK+ +
Sbjct: 60 GRNPQTGKEIKIAAANVPAFVSGKALKDAVK 90
>gi|120556663|ref|YP_961014.1| histone family protein DNA-binding protein [Marinobacter
aquaeolei VT8]
gi|120326512|gb|ABM20827.1| histone family protein DNA-binding protein [Marinobacter
aquaeolei VT8]
Length = 90
Score = 91.0 bits (225), Expect = 5e-17, Method: Composition-based stats.
Identities = 29/90 (32%), Positives = 45/90 (50%), Gaps = 1/90 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K L IA K L + +++N ++++ A A G V + GFG+F++R R AR
Sbjct: 1 MRKPELAAAIADKT-GLTREKAGEVINAFTDQVSAAAARGEDVTLIGFGTFNIRSREARN 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P I + F+AGK LK+ +
Sbjct: 60 GRNPQTGASIQIPASKTVGFKAGKALKDAI 89
>gi|292493201|ref|YP_003528640.1| integration host factor, subunit alpha [Nitrosococcus halophilus
Nc4]
gi|291581796|gb|ADE16253.1| integration host factor, alpha subunit [Nitrosococcus halophilus
Nc4]
Length = 100
Score = 91.0 bits (225), Expect = 5e-17, Method: Composition-based stats.
Identities = 28/89 (31%), Positives = 49/89 (55%), Gaps = 1/89 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ + T+ ++ LN ++ ++IV M E++ AL G V++ GFG+F +R + R
Sbjct: 4 TKADMTETLYQEL-GLNKREAKEIVEMFFEDIRCALERGETVKLSGFGNFELRDKGERPG 62
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P + I + + V FR G+ LK R+
Sbjct: 63 RNPKTGEEIPITARRVVTFRPGQKLKARV 91
>gi|258592137|emb|CBE68442.1| DNA-binding protein HU (DNA-binding protein II) (HB) [NC10
bacterium 'Dutch sediment']
Length = 93
Score = 91.0 bits (225), Expect = 5e-17, Method: Composition-based stats.
Identities = 26/92 (28%), Positives = 47/92 (51%), Gaps = 2/92 (2%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ + +A++ L + + V L+ + AL G ++++ GFGSF V+ + AR
Sbjct: 1 MTKADIASIVAER--GLAKKQAMEAVEATLDIVKNALKKGEKIQLVGFGSFQVKAKRARK 58
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P I++ + V F+ GK L +N+
Sbjct: 59 GRNPQTGDPITISARKVLKFKPGKALHLAVNN 90
>gi|46202467|ref|ZP_00208527.1| COG0776: Bacterial nucleoid DNA-binding protein [Magnetospirillum
magnetotacticum MS-1]
Length = 92
Score = 91.0 bits (225), Expect = 5e-17, Method: Composition-based stats.
Identities = 31/91 (34%), Positives = 47/91 (51%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI +A K+ D ++ + +T A+ +G V + GFG+FSV R AR
Sbjct: 1 MNKSELIAAVAD-GAKMTKADAGNAIDAVFAAITAAMKSGDDVRLVGFGTFSVSARPARE 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P K +++ F AGK+LK+ +N
Sbjct: 60 GRNPQTGKALTIAASKSAKFTAGKSLKDTIN 90
>gi|260582305|ref|ZP_05850098.1| integration host factor, beta subunit [Haemophilus influenzae
NT127]
gi|260094673|gb|EEW78568.1| integration host factor, beta subunit [Haemophilus influenzae
NT127]
Length = 116
Score = 91.0 bits (225), Expect = 5e-17, Method: Composition-based stats.
Identities = 32/91 (35%), Positives = 48/91 (52%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI IA +LN + + + L+ +T +L G V++ GFG+F V +RAAR
Sbjct: 27 MNKTDLIDAIANA-AELNKKQAKAALEATLDAITASLKEGEPVQLIGFGTFKVNERAART 85
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P I + VP F +GK LK+ +
Sbjct: 86 GRNPQTGAEIQIAASKVPAFVSGKALKDAIK 116
>gi|238918150|ref|YP_002931664.1| transcriptional regulator HU subunit alpha [Edwardsiella ictaluri
93-146]
gi|238867718|gb|ACR67429.1| DNA-binding protein HU-beta [Edwardsiella ictaluri 93-146]
Length = 90
Score = 91.0 bits (225), Expect = 5e-17, Method: Composition-based stats.
Identities = 31/91 (34%), Positives = 45/91 (49%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI IA K L+ + + L +T++L G V++ GFG+F V R R
Sbjct: 1 MNKTQLIDVIADK-ADLSKAQAKAALESTLAAITESLKAGDAVQLVGFGTFKVNHRNERT 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P K I + VP F +GK LK+ +
Sbjct: 60 GRNPQTGKEIKIAAANVPAFVSGKALKDAVK 90
>gi|269139156|ref|YP_003295857.1| integration host factor, alpha subunit [Edwardsiella tarda
EIB202]
gi|294636235|ref|ZP_06714648.1| integration host factor, alpha subunit [Edwardsiella tarda ATCC
23685]
gi|267984817|gb|ACY84646.1| integration host factor, alpha subunit [Edwardsiella tarda
EIB202]
gi|291090470|gb|EFE23031.1| integration host factor, alpha subunit [Edwardsiella tarda ATCC
23685]
gi|304559080|gb|ADM41744.1| Integration host factor alpha subunit [Edwardsiella tarda FL6-60]
Length = 98
Score = 91.0 bits (225), Expect = 5e-17, Method: Composition-based stats.
Identities = 28/96 (29%), Positives = 51/96 (53%), Gaps = 1/96 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ + + +K L+ +D + +V + EE+ +AL NG +V++ GFG+F +R + R
Sbjct: 4 TKAEMSEHLFEKL-GLSKRDAKDLVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 62
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDSTL 97
R P + I + + V FR G+ LK R+ +
Sbjct: 63 RNPKTGEDIPITARRVVTFRPGQKLKSRVENATPKD 98
>gi|194289389|ref|YP_002005296.1| integration host factor subunit alpha [Cupriavidus taiwanensis LMG
19424]
gi|193223224|emb|CAQ69229.1| integration host factor (IHF), alpha subunit [Cupriavidus
taiwanensis LMG 19424]
Length = 136
Score = 91.0 bits (225), Expect = 5e-17, Method: Composition-based stats.
Identities = 24/89 (26%), Positives = 44/89 (49%), Gaps = 1/89 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ L + + LN ++ + +V + + +AL G V++ GFG+F +R + R
Sbjct: 41 TKAELAEMLFDQ-VGLNKRESKDMVEAFFDVIREALEQGDSVKLSGFGNFQLRDKPQRPG 99
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P +VI + + V F A + LK +
Sbjct: 100 RNPKTGEVIPITARRVVTFHASQKLKGLV 128
>gi|218437716|ref|YP_002376045.1| histone family protein DNA-binding protein [Cyanothece sp. PCC
7424]
gi|307150941|ref|YP_003886325.1| histone family protein DNA-binding protein [Cyanothece sp. PCC
7822]
gi|218170444|gb|ACK69177.1| histone family protein DNA-binding protein [Cyanothece sp. PCC
7424]
gi|306981169|gb|ADN13050.1| histone family protein DNA-binding protein [Cyanothece sp. PCC
7822]
Length = 91
Score = 91.0 bits (225), Expect = 5e-17, Method: Composition-based stats.
Identities = 29/90 (32%), Positives = 49/90 (54%), Gaps = 1/90 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K L+ IA + + + + ++ +E + A+++G +V + GFGSF R+R AR
Sbjct: 1 MNKGELVDEIASR-AMVTKKQADAVLTAAIEAIMDAVSSGDKVTLVGFGSFEARERKARE 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P + + + E VP F AGK KE++
Sbjct: 60 GRNPKTGEKMVIPETKVPAFSAGKLFKEKV 89
>gi|209964628|ref|YP_002297543.1| integration host factor subunit alpha [Rhodospirillum centenum
SW]
gi|209958094|gb|ACI98730.1| integration host factor, alpha subunit [Rhodospirillum centenum
SW]
Length = 106
Score = 91.0 bits (225), Expect = 5e-17, Method: Composition-based stats.
Identities = 29/91 (31%), Positives = 49/91 (53%), Gaps = 1/91 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
++ L + ++ L+ + +V +L+E++ ALA G V+I FGSFSVR + R+
Sbjct: 6 TRAQLSEAVYQE-VGLSRNESADLVESVLDEISDALARGDMVKISSFGSFSVRAKGQRIG 64
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P + + + + V FRA LK R+N
Sbjct: 65 RNPKTGEEVPILPRRVLVFRASHVLKNRINE 95
>gi|27365694|ref|NP_761222.1| integration host factor subunit alpha [Vibrio vulnificus CMCP6]
gi|37680150|ref|NP_934759.1| integration host factor subunit alpha [Vibrio vulnificus YJ016]
gi|320156101|ref|YP_004188480.1| integration host factor subunit alpha [Vibrio vulnificus
MO6-24/O]
gi|33301286|sp|Q8DA35|IHFA_VIBVU RecName: Full=Integration host factor subunit alpha;
Short=IHF-alpha
gi|61213547|sp|Q7MK44|IHFA_VIBVY RecName: Full=Integration host factor subunit alpha;
Short=IHF-alpha
gi|27361843|gb|AAO10749.1| integration host factor, alpha subunit [Vibrio vulnificus CMCP6]
gi|37198896|dbj|BAC94730.1| integration host factor, alpha subunit [Vibrio vulnificus YJ016]
gi|319931413|gb|ADV86277.1| integration host factor alpha subunit [Vibrio vulnificus
MO6-24/O]
Length = 95
Score = 91.0 bits (225), Expect = 5e-17, Method: Composition-based stats.
Identities = 28/93 (30%), Positives = 49/93 (52%), Gaps = 1/93 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ L + +K + +D + V + EE+ +AL NG +V++ GFG+F +R + R
Sbjct: 4 TKADLAENLFEKL-GFSKRDAKDTVEVFFEEIRKALENGEQVKLSGFGNFDLRDKNERPG 62
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLNSPD 94
R P + I + + V FR G+ LK R+ +
Sbjct: 63 RNPKTGEDIPITARRVVTFRPGQKLKARVENLK 95
>gi|209523054|ref|ZP_03271611.1| histone family protein DNA-binding protein [Arthrospira maxima
CS-328]
gi|209496641|gb|EDZ96939.1| histone family protein DNA-binding protein [Arthrospira maxima
CS-328]
Length = 98
Score = 91.0 bits (225), Expect = 5e-17, Method: Composition-based stats.
Identities = 30/96 (31%), Positives = 49/96 (51%), Gaps = 1/96 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K L+ + K + + + I++ + E + A+A G +V + GFGSF R R AR
Sbjct: 1 MNKEQLVQETSIK-AGVTKKQADAIISAICECIMDAVAEGEKVTLVGFGSFEARHRKARE 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDST 96
R P + +++ VP F AGK KER+ + +
Sbjct: 60 GRNPSTGQPMTIPATTVPAFSAGKAFKERVANESNE 95
>gi|104781112|ref|YP_607610.1| integration host factor subunit alpha [Pseudomonas entomophila
L48]
gi|123079215|sp|Q1IC09|IHFA_PSEE4 RecName: Full=Integration host factor subunit alpha;
Short=IHF-alpha
gi|95110099|emb|CAK14804.1| integration host factor (IHF), alpha subunit, DNA-binding
protein, DNA replication [Pseudomonas entomophila L48]
Length = 100
Score = 91.0 bits (225), Expect = 5e-17, Method: Composition-based stats.
Identities = 26/95 (27%), Positives = 51/95 (53%), Gaps = 1/95 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ + + ++ LN ++ +++V + EE+ AL + +V++ GFG+F +R + R
Sbjct: 5 TKAEMAERLYEEL-GLNKREAKELVELFFEEIRHALEDNEQVKLSGFGNFDLRDKRQRPG 63
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDST 96
R P + I + + V FR G+ LK R+ + T
Sbjct: 64 RNPKTGEEIPITARRVVTFRPGQKLKARVEAYAGT 98
>gi|259908572|ref|YP_002648928.1| integration host factor subunit alpha [Erwinia pyrifoliae Ep1/96]
gi|224964194|emb|CAX55701.1| Integration host factor alpha-subunit (IHF-alpha) [Erwinia
pyrifoliae Ep1/96]
gi|283478541|emb|CAY74457.1| Integration host factor subunit alpha (IHF-alpha) [Erwinia
pyrifoliae DSM 12163]
gi|310767528|gb|ADP12478.1| integration host factor subunit alpha [Erwinia sp. Ejp617]
Length = 99
Score = 91.0 bits (225), Expect = 5e-17, Method: Composition-based stats.
Identities = 28/91 (30%), Positives = 52/91 (57%), Gaps = 1/91 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ + + +K L+ +D +++V + EE+ +AL NG +V++ GFG+F +R + R
Sbjct: 4 TKAEMSEYLFEKL-GLSKRDAKELVELFFEEVRRALENGEQVKLSGFGNFDLRDKNQRPG 62
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P + I + + V FR G+ LK R+ +
Sbjct: 63 RNPKTGEDIPITARRVVTFRPGQKLKSRVEN 93
>gi|311696395|gb|ADP99268.1| histone-like bacterial DNA-binding protein [marine bacterium
HP15]
Length = 90
Score = 91.0 bits (225), Expect = 5e-17, Method: Composition-based stats.
Identities = 26/90 (28%), Positives = 45/90 (50%), Gaps = 1/90 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K L IA + L + +++ ++++ A + G V + GFG+F++R R AR
Sbjct: 1 MRKPELAAAIADRT-GLTREKASEVITAFTDQVSAAASRGEDVTLIGFGTFNIRSREARD 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P + I + F+AGK LK+ +
Sbjct: 60 GRNPQTGETIRIPASKTVGFKAGKALKDEI 89
>gi|253998435|ref|YP_003050498.1| integration host factor subunit alpha [Methylovorus sp. SIP3-4]
gi|313200510|ref|YP_004039168.1| integration host factor subunit alpha [Methylovorus sp. MP688]
gi|253985114|gb|ACT49971.1| integration host factor, alpha subunit [Methylovorus sp. SIP3-4]
gi|312439826|gb|ADQ83932.1| integration host factor, alpha subunit [Methylovorus sp. MP688]
Length = 100
Score = 91.0 bits (225), Expect = 5e-17, Method: Composition-based stats.
Identities = 25/89 (28%), Positives = 48/89 (53%), Gaps = 1/89 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ L + ++ LN ++ + +V EE+ AL +G V++ GFG+F +R+++ R
Sbjct: 4 TKADLADLLFEQ-VGLNKREAKDMVEAFFEEIRTALESGDSVKLSGFGNFELRQKSERPG 62
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P + I + + V F A + LK ++
Sbjct: 63 RNPKTGEEIPITARRVVTFHASQKLKLKV 91
>gi|302878589|ref|YP_003847153.1| histone family protein DNA-binding protein [Gallionella
capsiferriformans ES-2]
gi|302581378|gb|ADL55389.1| histone family protein DNA-binding protein [Gallionella
capsiferriformans ES-2]
Length = 91
Score = 91.0 bits (225), Expect = 5e-17, Method: Composition-based stats.
Identities = 30/92 (32%), Positives = 45/92 (48%), Gaps = 1/92 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M + LI +A K E+ + L+E + + LA G + + GFG+F VR+RAAR
Sbjct: 1 MNRKELIDALATKT-GSTKIVAEQNIAALIEVIGETLAKGDSISLVGFGTFEVRERAART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P + + VP F+ G LK +N
Sbjct: 60 GRNPKTGAELKIAASKVPAFKPGATLKSAVNK 91
>gi|94502166|ref|ZP_01308664.1| DNA-binding protein HU [Oceanobacter sp. RED65]
gi|94425691|gb|EAT10701.1| DNA-binding protein HU [Oceanobacter sp. RED65]
Length = 76
Score = 91.0 bits (225), Expect = 5e-17, Method: Composition-based stats.
Identities = 25/76 (32%), Positives = 43/76 (56%)
Query: 16 KLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLARAPLAQKVISVEEK 75
+ + ++ ++ +T AL G +V + GFG+F+V++RAAR R P + I +
Sbjct: 1 DIPKAAAGRALDATVDAITNALKEGDQVVLVGFGTFAVKERAARTGRNPQTGQPIEIAAA 60
Query: 76 MVPFFRAGKNLKERLN 91
VP F+ GK LK+ +N
Sbjct: 61 KVPGFKPGKALKDAVN 76
>gi|309787032|ref|ZP_07681644.1| DNA-binding protein HU-beta [Shigella dysenteriae 1617]
gi|308924610|gb|EFP70105.1| DNA-binding protein HU-beta [Shigella dysenteriae 1617]
gi|332760731|gb|EGJ91019.1| DNA-binding protein HU-beta [Shigella flexneri 4343-70]
gi|332768362|gb|EGJ98546.1| DNA-binding protein HU-&beta, NS1 [Shigella flexneri 2930-71]
Length = 85
Score = 91.0 bits (225), Expect = 5e-17, Method: Composition-based stats.
Identities = 30/85 (35%), Positives = 49/85 (57%), Gaps = 1/85 (1%)
Query: 7 IGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLARAPLA 66
I IA ++ + ++ ++ +T++L G V + GFG+F+V++RAAR R P
Sbjct: 2 IDKIAA-GADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAARTGRNPQT 60
Query: 67 QKVISVEEKMVPFFRAGKNLKERLN 91
K I++ VP FRAGK LK+ +N
Sbjct: 61 GKEITIAAAKVPSFRAGKALKDAVN 85
>gi|169634330|ref|YP_001708066.1| integration host factor subunit alpha [Acinetobacter baumannii
SDF]
gi|169797146|ref|YP_001714939.1| integration host factor subunit alpha [Acinetobacter baumannii
AYE]
gi|184156927|ref|YP_001845266.1| integration host factor subunit alpha [Acinetobacter baumannii
ACICU]
gi|213156063|ref|YP_002318108.1| integration host factor, alpha subunit [Acinetobacter baumannii
AB0057]
gi|215484609|ref|YP_002326844.1| integration host factor, alpha subunit [Acinetobacter baumannii
AB307-0294]
gi|239500688|ref|ZP_04659998.1| integration host factor subunit alpha [Acinetobacter baumannii
AB900]
gi|260551930|ref|ZP_05825792.1| nucleoid DNA-binding protein [Acinetobacter sp. RUH2624]
gi|260556048|ref|ZP_05828267.1| integration host factor, alpha subunit [Acinetobacter baumannii
ATCC 19606]
gi|262281021|ref|ZP_06058804.1| integration host factor alpha subunit [Acinetobacter
calcoaceticus RUH2202]
gi|293610417|ref|ZP_06692718.1| conserved hypothetical protein [Acinetobacter sp. SH024]
gi|299771523|ref|YP_003733549.1| integration host factor subunit alpha [Acinetobacter sp. DR1]
gi|301347474|ref|ZP_07228215.1| integration host factor subunit alpha [Acinetobacter baumannii
AB056]
gi|301510732|ref|ZP_07235969.1| integration host factor subunit alpha [Acinetobacter baumannii
AB058]
gi|301596052|ref|ZP_07241060.1| integration host factor subunit alpha [Acinetobacter baumannii
AB059]
gi|332856885|ref|ZP_08436294.1| integration host factor, alpha subunit [Acinetobacter baumannii
6013150]
gi|332867212|ref|ZP_08437477.1| integration host factor, alpha subunit [Acinetobacter baumannii
6013113]
gi|332873996|ref|ZP_08441931.1| integration host factor, alpha subunit [Acinetobacter baumannii
6014059]
gi|226707360|sp|B7GZZ4|IHFA_ACIB3 RecName: Full=Integration host factor subunit alpha;
Short=IHF-alpha
gi|226707361|sp|B7I698|IHFA_ACIB5 RecName: Full=Integration host factor subunit alpha;
Short=IHF-alpha
gi|226707362|sp|B2HTI2|IHFA_ACIBC RecName: Full=Integration host factor subunit alpha;
Short=IHF-alpha
gi|226707363|sp|B0VV83|IHFA_ACIBS RecName: Full=Integration host factor subunit alpha;
Short=IHF-alpha
gi|226707364|sp|B0V5Q4|IHFA_ACIBY RecName: Full=Integration host factor subunit alpha;
Short=IHF-alpha
gi|226707551|sp|A3M2B0|IHFA_ACIBT RecName: Full=Integration host factor subunit alpha;
Short=IHF-alpha
gi|169150073|emb|CAM87967.1| integration host factor (IHF), alpha subunit, DNA-binding
protein, DNA replication [Acinetobacter baumannii AYE]
gi|169153122|emb|CAP02196.1| integration host factor (IHF), alpha subunit, DNA-binding
protein, DNA replication [Acinetobacter baumannii]
gi|183208521|gb|ACC55919.1| Bacterial nucleoid DNA-binding protein [Acinetobacter baumannii
ACICU]
gi|193076387|gb|ABO11054.2| integration host factor alpha subunit [Acinetobacter baumannii
ATCC 17978]
gi|213055223|gb|ACJ40125.1| integration host factor, alpha subunit [Acinetobacter baumannii
AB0057]
gi|213987020|gb|ACJ57319.1| integration host factor, alpha subunit [Acinetobacter baumannii
AB307-0294]
gi|260405333|gb|EEW98828.1| nucleoid DNA-binding protein [Acinetobacter sp. RUH2624]
gi|260410103|gb|EEX03402.1| integration host factor, alpha subunit [Acinetobacter baumannii
ATCC 19606]
gi|262257921|gb|EEY76656.1| integration host factor alpha subunit [Acinetobacter
calcoaceticus RUH2202]
gi|292827649|gb|EFF86013.1| conserved hypothetical protein [Acinetobacter sp. SH024]
gi|298701611|gb|ADI92176.1| integration host factor subunit alpha [Acinetobacter sp. DR1]
gi|322506823|gb|ADX02277.1| ihfA [Acinetobacter baumannii 1656-2]
gi|323516692|gb|ADX91073.1| integration host factor subunit alpha [Acinetobacter baumannii
TCDC-AB0715]
gi|325124572|gb|ADY84095.1| integration host factor (IHF), alpha subunit, DNA-binding
protein, DNA replication [Acinetobacter calcoaceticus
PHEA-2]
gi|332726939|gb|EGJ58444.1| integration host factor, alpha subunit [Acinetobacter baumannii
6013150]
gi|332734151|gb|EGJ65283.1| integration host factor, alpha subunit [Acinetobacter baumannii
6013113]
gi|332737737|gb|EGJ68629.1| integration host factor, alpha subunit [Acinetobacter baumannii
6014059]
Length = 98
Score = 91.0 bits (225), Expect = 5e-17, Method: Composition-based stats.
Identities = 25/92 (27%), Positives = 53/92 (57%), Gaps = 1/92 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ + +++ LN ++ +++V + +E++QAL G +V++ GFG+F +R + R
Sbjct: 5 TKADMADHLSE-LTSLNRREAKQMVELFFDEISQALIAGEQVKLSGFGNFELRDKRERPG 63
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLNSP 93
R P + I + + V FRAG+ ++R+ +
Sbjct: 64 RNPKTGEEIPISARRVVTFRAGQKFRQRVGNE 95
>gi|158321657|ref|YP_001514164.1| histone family protein DNA-binding protein [Alkaliphilus
oremlandii OhILAs]
gi|158141856|gb|ABW20168.1| histone family protein DNA-binding protein [Alkaliphilus
oremlandii OhILAs]
Length = 92
Score = 91.0 bits (225), Expect = 5e-17, Method: Composition-based stats.
Identities = 35/93 (37%), Positives = 55/93 (59%), Gaps = 2/93 (2%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ L+ +A+K +L +D E +N +E + +ALA G +V++ GFG+F VR+R R
Sbjct: 1 MNKAELVAKMAEK-AQLTKKDTELALNSFMETVEEALATGDKVQLVGFGTFEVRERKPRQ 59
Query: 61 ARAPLAQKV-ISVEEKMVPFFRAGKNLKERLNS 92
R P + I + P F+AGK LKE++N
Sbjct: 60 GRNPRNPEQVIDIPASKAPVFKAGKTLKEQMNK 92
>gi|83311178|ref|YP_421442.1| nucleoid DNA-binding protein [Magnetospirillum magneticum AMB-1]
gi|82946019|dbj|BAE50883.1| Bacterial nucleoid DNA-binding protein [Magnetospirillum
magneticum AMB-1]
Length = 92
Score = 91.0 bits (225), Expect = 5e-17, Method: Composition-based stats.
Identities = 31/91 (34%), Positives = 48/91 (52%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI +A + K+ D ++ + +T A+ +G V + GFG+FSV R AR
Sbjct: 1 MNKSELINAVAD-SAKMTKADAGNAIDAVFAAITTAMKSGDDVRLVGFGTFSVSARPARE 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P K +++ F AGK+LK+ +N
Sbjct: 60 GRNPQTGKTLTIAASKSAKFTAGKSLKDTIN 90
>gi|260597643|ref|YP_003210214.1| integration host factor subunit alpha [Cronobacter turicensis
z3032]
gi|260216820|emb|CBA30309.1| Integration host factor subunit alpha [Cronobacter turicensis
z3032]
Length = 99
Score = 91.0 bits (225), Expect = 6e-17, Method: Composition-based stats.
Identities = 29/97 (29%), Positives = 52/97 (53%), Gaps = 1/97 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ + + K L+ +D +++V + EE+ +AL NG +V++ GFG+F +R + R
Sbjct: 4 TKAEMSEYLFDKL-GLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 62
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDSTLS 98
R P + I + + V FR G+ LK R+ + S
Sbjct: 63 RNPKTGEDIPITARRVVTFRPGQKLKSRVENASPKES 99
>gi|119472475|ref|ZP_01614574.1| integration host factor (IHF), alpha subunit, DNA-bending
protein, DNA replication [Alteromonadales bacterium
TW-7]
gi|332534256|ref|ZP_08410101.1| integration host factor alpha subunit [Pseudoalteromonas
haloplanktis ANT/505]
gi|119444912|gb|EAW26211.1| integration host factor (IHF), alpha subunit, DNA-bending
protein, DNA replication [Alteromonadales bacterium
TW-7]
gi|332036336|gb|EGI72807.1| integration host factor alpha subunit [Pseudoalteromonas
haloplanktis ANT/505]
Length = 99
Score = 91.0 bits (225), Expect = 6e-17, Method: Composition-based stats.
Identities = 27/89 (30%), Positives = 47/89 (52%), Gaps = 1/89 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ + + +K +N +D + +V EE+ AL G +V++ GFG+F +R + R
Sbjct: 4 TKADIAEHLFEKL-GINKKDAKDLVEAFFEEIRSALEKGEQVKLSGFGNFDLRDKKERPG 62
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P + I + + V FR G+ LK R+
Sbjct: 63 RNPKTGEDIPISARRVVTFRPGQKLKTRV 91
>gi|58979367|gb|AAW83348.1| DNA-binding protein HU [Campylobacter jejuni]
gi|58979385|gb|AAW83357.1| DNA-binding protein HU [Campylobacter jejuni]
gi|58979387|gb|AAW83358.1| DNA-binding protein HU [Campylobacter jejuni]
gi|58979389|gb|AAW83359.1| DNA-binding protein HU [Campylobacter jejuni]
gi|58979391|gb|AAW83360.1| DNA-binding protein HU [Campylobacter jejuni]
gi|58979397|gb|AAW83363.1| DNA-binding protein HU [Campylobacter jejuni]
gi|58979421|gb|AAW83375.1| DNA-binding protein HU [Campylobacter jejuni]
Length = 98
Score = 91.0 bits (225), Expect = 6e-17, Method: Composition-based stats.
Identities = 33/90 (36%), Positives = 47/90 (52%), Gaps = 1/90 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ I +A + L +D + ++ +T LA G + GFG+FS ++RAAR
Sbjct: 1 MTKADFISLVA-QTAGLTKKDATTATDAVISTITDVLAKGDSISFIGFGTFSTQERAARE 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
AR P K I V V F+ GKNLKE +
Sbjct: 60 ARVPSTGKTIKVPATRVAKFKVGKNLKEAV 89
>gi|50119198|ref|YP_048365.1| transcriptional regulator HU subunit alpha [Pectobacterium
atrosepticum SCRI1043]
gi|49609724|emb|CAG73158.1| DNA-binding protein HU-alpha [Pectobacterium atrosepticum
SCRI1043]
Length = 90
Score = 91.0 bits (225), Expect = 6e-17, Method: Composition-based stats.
Identities = 31/91 (34%), Positives = 45/91 (49%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI IA K L+ + + L +T++L G V++ GFG+F V R R
Sbjct: 1 MNKTQLIDVIADK-ADLSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRNERT 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P K I + VP F +GK LK+ +
Sbjct: 60 GRNPQTGKEIKIAAANVPAFVSGKALKDAVK 90
>gi|296536157|ref|ZP_06898285.1| DNA-binding protein HU [Roseomonas cervicalis ATCC 49957]
gi|296263528|gb|EFH10025.1| DNA-binding protein HU [Roseomonas cervicalis ATCC 49957]
Length = 90
Score = 91.0 bits (225), Expect = 6e-17, Method: Composition-based stats.
Identities = 25/90 (27%), Positives = 46/90 (51%), Gaps = 1/90 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K L+ +A+ +L+ ++++ + + ++Q+L V + GFG+FS +R A
Sbjct: 1 MNKQDLVAVVAE-TGELSKAKAGEVLDAVFDAISQSLKAKQEVRLVGFGTFSTSRRKAGK 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P + I + F+AGK LK+ L
Sbjct: 60 GRNPRTGEEIEIAATTTVRFKAGKALKDGL 89
>gi|87312362|ref|ZP_01094454.1| probable DNA-binding protein HU [Blastopirellula marina DSM 3645]
gi|87284927|gb|EAQ76869.1| probable DNA-binding protein HU [Blastopirellula marina DSM 3645]
Length = 159
Score = 90.6 bits (224), Expect = 6e-17, Method: Composition-based stats.
Identities = 31/89 (34%), Positives = 48/89 (53%), Gaps = 1/89 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K ++ TI+++ L ++IV + L GR+E+R FG F V+KRAAR A
Sbjct: 21 TKKEIVKTISEEI-GLTQLKTKEIVQKTFNAIVDTLVEDGRIELRNFGVFEVKKRAARKA 79
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P + + V K V F+ GK ++ER+
Sbjct: 80 RNPRTGEKVYVPSKFVVTFKPGKEMEERV 108
>gi|323697932|ref|ZP_08109844.1| histone family protein DNA-binding protein [Desulfovibrio sp.
ND132]
gi|323457864|gb|EGB13729.1| histone family protein DNA-binding protein [Desulfovibrio
desulfuricans ND132]
Length = 90
Score = 90.6 bits (224), Expect = 6e-17, Method: Composition-based stats.
Identities = 30/91 (32%), Positives = 48/91 (52%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ L+ IA+K L + E+ +N LE + L + G++ + GFG+F V R +R+
Sbjct: 1 MTKAELVVKIAEK-ANLTKANAERALNAFLETVESTLVSEGKLTLTGFGTFMVELRKSRV 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + + E V FR GK LK+ +
Sbjct: 60 GRNPRTGLELKIPETKVVKFRPGKILKDAVK 90
>gi|297538181|ref|YP_003673950.1| histone family protein DNA-binding protein [Methylotenera sp.
301]
gi|297257528|gb|ADI29373.1| histone family protein DNA-binding protein [Methylotenera sp.
301]
Length = 90
Score = 90.6 bits (224), Expect = 6e-17, Method: Composition-based stats.
Identities = 34/91 (37%), Positives = 47/91 (51%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI IA + L D + ++ +T AL NG V + GFG+F V +RAAR
Sbjct: 1 MNKSELIDAIAA-SAGLTKADAGRAIDATTAAITAALKNGDAVTLVGFGTFKVTQRAART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + + + P F AGK LK+ +N
Sbjct: 60 GRNPRTGAELKIAARKAPAFTAGKTLKDSVN 90
>gi|163801038|ref|ZP_02194938.1| integration host factor alpha subunit [Vibrio sp. AND4]
gi|159175387|gb|EDP60184.1| integration host factor alpha subunit [Vibrio sp. AND4]
Length = 98
Score = 90.6 bits (224), Expect = 6e-17, Method: Composition-based stats.
Identities = 27/95 (28%), Positives = 50/95 (52%), Gaps = 1/95 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ L + K + +D ++ V + EE+ +AL +G +V++ GFG+F +R + R
Sbjct: 4 TKAELAEDLFDKL-GFSKRDAKETVEVFFEEIRKALESGEQVKLSGFGNFDLRDKNERPG 62
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDST 96
R P + I + + V FR G+ LK R+ + +
Sbjct: 63 RNPKTGEDIPITARRVVTFRPGQKLKARVENIKAN 97
>gi|154253364|ref|YP_001414188.1| integration host factor subunit alpha [Parvibaculum
lavamentivorans DS-1]
gi|154157314|gb|ABS64531.1| integration host factor, alpha subunit [Parvibaculum
lavamentivorans DS-1]
Length = 105
Score = 90.6 bits (224), Expect = 6e-17, Method: Composition-based stats.
Identities = 28/90 (31%), Positives = 51/90 (56%), Gaps = 1/90 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
++ L + ++ L+ + ++V ++L E++ LA G V++ FGSFSVRK+ R+
Sbjct: 6 TRAQLSEAVYQE-VGLSRNESAELVELVLAEISDCLARGDTVKLSSFGSFSVRKKGGRMG 64
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + + ++ + V FR LKER+N
Sbjct: 65 RNPKTGEEVPIKPRRVLVFRPSHVLKERIN 94
>gi|262369831|ref|ZP_06063158.1| integration host factor alpha subunit [Acinetobacter johnsonii
SH046]
gi|262314870|gb|EEY95910.1| integration host factor alpha subunit [Acinetobacter johnsonii
SH046]
Length = 98
Score = 90.6 bits (224), Expect = 6e-17, Method: Composition-based stats.
Identities = 25/92 (27%), Positives = 54/92 (58%), Gaps = 1/92 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ + +++ LN ++ +++V + +E++QAL +G +V++ GFG+F +R + R
Sbjct: 5 TKAEMADHLSE-LTSLNRREAKQMVELFFDEISQALISGEQVKLSGFGNFELRDKRQRPG 63
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLNSP 93
R P + I + + V FRAG+ ++R+ +
Sbjct: 64 RNPKTGEEIPISARRVVTFRAGQKFRQRVGNE 95
>gi|150007792|ref|YP_001302535.1| DNA-binding protein HU-beta [Parabacteroides distasonis ATCC
8503]
gi|255013499|ref|ZP_05285625.1| DNA-binding protein HU-beta [Bacteroides sp. 2_1_7]
gi|256840058|ref|ZP_05545567.1| integration host factor, alpha subunit [Parabacteroides sp. D13]
gi|262381699|ref|ZP_06074837.1| DNA-binding protein HU-beta [Bacteroides sp. 2_1_33B]
gi|298376838|ref|ZP_06986793.1| DNA-binding protein HU [Bacteroides sp. 3_1_19]
gi|301310172|ref|ZP_07216111.1| DNA-binding protein HU [Bacteroides sp. 20_3]
gi|149936216|gb|ABR42913.1| DNA-binding protein HU-beta [Parabacteroides distasonis ATCC
8503]
gi|256738988|gb|EEU52313.1| integration host factor, alpha subunit [Parabacteroides sp. D13]
gi|262296876|gb|EEY84806.1| DNA-binding protein HU-beta [Bacteroides sp. 2_1_33B]
gi|298266716|gb|EFI08374.1| DNA-binding protein HU [Bacteroides sp. 3_1_19]
gi|300831746|gb|EFK62377.1| DNA-binding protein HU [Bacteroides sp. 20_3]
Length = 94
Score = 90.6 bits (224), Expect = 6e-17, Method: Composition-based stats.
Identities = 26/92 (28%), Positives = 48/92 (52%), Gaps = 1/92 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI +A K L Q+ +K+++ +E +T+ ++ + + GFG+ R + RL
Sbjct: 1 MNKAELIEALADKT-GLQKQEAKKVLDAYIEIVTERMSENEEIVLVGFGTLIPRPQTQRL 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
AR P + + + F+ GK L E +N+
Sbjct: 60 ARNPKTGTPVMIPARTTVKFKPGKFLLEAMNA 91
>gi|73540975|ref|YP_295495.1| integration host factor subunit alpha [Ralstonia eutropha JMP134]
gi|72118388|gb|AAZ60651.1| Integration host factor, alpha subunit [Ralstonia eutropha JMP134]
Length = 138
Score = 90.6 bits (224), Expect = 6e-17, Method: Composition-based stats.
Identities = 24/89 (26%), Positives = 44/89 (49%), Gaps = 1/89 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ L + + LN ++ + +V + + +AL G V++ GFG+F +R + R
Sbjct: 41 TKAELAEMLFDQ-VGLNKRESKDMVEAFFDVIREALEQGDSVKLSGFGNFQLRDKPQRPG 99
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P +VI + + V F A + LK +
Sbjct: 100 RNPKTGEVIPITARRVVTFHASQKLKSLV 128
>gi|312898729|ref|ZP_07758118.1| putative integration host factor, beta subunit [Megasphaera
micronuciformis F0359]
gi|310620160|gb|EFQ03731.1| putative integration host factor, beta subunit [Megasphaera
micronuciformis F0359]
Length = 92
Score = 90.6 bits (224), Expect = 6e-17, Method: Composition-based stats.
Identities = 37/93 (39%), Positives = 55/93 (59%), Gaps = 1/93 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI ++A+K+ L +D EK V + E +++ L G +V+I GFG+F VR R AR
Sbjct: 1 MNKTELIASVAQKS-DLTKKDAEKAVKAVFEAVSETLKKGDKVQIIGFGTFEVRARKARE 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSP 93
R P +VI + P F+AGK LK+ +N
Sbjct: 60 GRNPRNNEVIKIPASKTPAFKAGKQLKDLVNKK 92
>gi|307329817|ref|ZP_07608972.1| histone family protein DNA-binding protein [Streptomyces
violaceusniger Tu 4113]
gi|306884546|gb|EFN15577.1| histone family protein DNA-binding protein [Streptomyces
violaceusniger Tu 4113]
Length = 190
Score = 90.6 bits (224), Expect = 6e-17, Method: Composition-based stats.
Identities = 32/95 (33%), Positives = 51/95 (53%), Gaps = 2/95 (2%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ L+ IA K Q + V+ +L+ + +A+ G RV + GFGSF +R AR
Sbjct: 1 MNKAQLVEAIADKVGG--RQQAAEAVDAVLDAIVRAVVAGERVSVTGFGSFEKVERPARY 58
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDS 95
AR P + + V++ VP FRAG+ K+ ++
Sbjct: 59 ARNPQTGERVRVKKTSVPRFRAGQGFKDLVSGSKK 93
>gi|303258444|ref|ZP_07344447.1| DNA-binding protein HU [Burkholderiales bacterium 1_1_47]
gi|302858890|gb|EFL81978.1| DNA-binding protein HU [Burkholderiales bacterium 1_1_47]
Length = 92
Score = 90.6 bits (224), Expect = 6e-17, Method: Composition-based stats.
Identities = 29/93 (31%), Positives = 49/93 (52%), Gaps = 1/93 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI +A+ + K + DV+ +++ L ++ + + G + + GFG+F KR AR
Sbjct: 1 MNKTELIAAVAEASGK-SKADVKDVLDALTAQIVKTVKAGDEISLVGFGTFKSAKREART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSP 93
R P I + + P F AGK K+ LN+
Sbjct: 60 GRNPATGATIQIPASVQPKFVAGKQFKDALNTK 92
>gi|154483310|ref|ZP_02025758.1| hypothetical protein EUBVEN_01011 [Eubacterium ventriosum ATCC
27560]
gi|149735820|gb|EDM51706.1| hypothetical protein EUBVEN_01011 [Eubacterium ventriosum ATCC
27560]
Length = 112
Score = 90.6 bits (224), Expect = 6e-17, Method: Composition-based stats.
Identities = 29/91 (31%), Positives = 47/91 (51%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ I IA++ L+ D K V + + + + G ++++ GFG+F V KR R
Sbjct: 23 MNKTEFIAAIAEE-AGLSKTDAAKAVKAFTDVVVEEMKKGEKIQLVGFGTFEVSKRPERQ 81
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
P ++ I++ VP F+AG LK LN
Sbjct: 82 GINPATKEKITIAAANVPKFKAGAGLKNALN 112
>gi|95930236|ref|ZP_01312974.1| histone-like DNA-binding protein [Desulfuromonas acetoxidans DSM
684]
gi|95133699|gb|EAT15360.1| histone-like DNA-binding protein [Desulfuromonas acetoxidans DSM
684]
Length = 91
Score = 90.6 bits (224), Expect = 6e-17, Method: Composition-based stats.
Identities = 40/92 (43%), Positives = 59/92 (64%), Gaps = 1/92 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI ++ + L Y+ E+IVN++ + MTQ L GGR+EIRGFGSF V+ +
Sbjct: 1 MNKSELIEALSLE-KDLTYKRAEEIVNLMFDSMTQELVKGGRIEIRGFGSFVVKDYKSYT 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P + I V+ K +PFF+ GK L+ER+++
Sbjct: 60 GRNPKTGEAIQVKTKKLPFFKVGKELRERVDN 91
>gi|262374319|ref|ZP_06067595.1| integration host factor, alpha subunit [Acinetobacter junii
SH205]
gi|262310877|gb|EEY91965.1| integration host factor, alpha subunit [Acinetobacter junii
SH205]
Length = 98
Score = 90.6 bits (224), Expect = 6e-17, Method: Composition-based stats.
Identities = 25/92 (27%), Positives = 53/92 (57%), Gaps = 1/92 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ + +++ LN ++ +++V + +E++QAL G +V++ GFG+F +R + R
Sbjct: 5 TKAEMADHLSE-LTSLNRREAKQMVELFFDEISQALIGGEQVKLSGFGNFELRDKRERPG 63
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLNSP 93
R P + I + + V FRAG+ ++R+ +
Sbjct: 64 RNPKTGEEIPISARRVVTFRAGQKFRQRVGNE 95
>gi|39996845|ref|NP_952796.1| integration host factor subunit beta [Geobacter sulfurreducens
PCA]
gi|39983733|gb|AAR35123.1| integration host factor, beta subunit [Geobacter sulfurreducens
PCA]
gi|298505860|gb|ADI84583.1| integration host factor, beta subunit [Geobacter sulfurreducens
KN400]
Length = 92
Score = 90.6 bits (224), Expect = 6e-17, Method: Composition-based stats.
Identities = 37/93 (39%), Positives = 56/93 (60%), Gaps = 1/93 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI +A + L Y+ E++VN++ + M+ A+ R+EIRGFGSF V+ +
Sbjct: 1 MNKSELIEALAAE-KGLTYKKAEEVVNIVFDSMSSAMIRNERIEIRGFGSFVVKDYKSYT 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSP 93
R P + I V+ K +PFF+ GK LKER++
Sbjct: 60 GRNPKTGEPIEVKPKKLPFFKVGKELKERVDGK 92
>gi|315651174|ref|ZP_07904205.1| DNA-binding protein HU [Eubacterium saburreum DSM 3986]
gi|315486572|gb|EFU76923.1| DNA-binding protein HU [Eubacterium saburreum DSM 3986]
Length = 93
Score = 90.6 bits (224), Expect = 6e-17, Method: Composition-based stats.
Identities = 28/93 (30%), Positives = 51/93 (54%), Gaps = 1/93 (1%)
Query: 1 MIKSSLIGTIAKKNPK-LNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAAR 59
M ++ LI +AKK + ++ E + ++ +T+ L N G++++ GFG+F R R
Sbjct: 1 MNRTELIDAMAKKMGDSVTKKEAESALKAFVDVVTEELTNKGKIQLVGFGTFETSVRPER 60
Query: 60 LARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P + + V E +V F+ GK LK+ +N+
Sbjct: 61 EVRNPRTGETMKVAESVVAKFKPGKALKDAVNN 93
>gi|296135851|ref|YP_003643093.1| integration host factor, alpha subunit [Thiomonas intermedia K12]
gi|295795973|gb|ADG30763.1| integration host factor, alpha subunit [Thiomonas intermedia K12]
Length = 115
Score = 90.6 bits (224), Expect = 6e-17, Method: Composition-based stats.
Identities = 24/89 (26%), Positives = 45/89 (50%), Gaps = 1/89 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ L + ++ LN ++ + +V+ + + AL G V++ GFG F +R++A R
Sbjct: 15 TKAELAEQLYERI-GLNKRESKDMVDAFFDRVRDALGRGEDVKLSGFGHFQLREKAQRPG 73
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P ++I + + V F A K +L
Sbjct: 74 RNPRTGEIIPIAARRVVIFHASHKFKHQL 102
>gi|171058434|ref|YP_001790783.1| integration host factor subunit alpha [Leptothrix cholodnii SP-6]
gi|170775879|gb|ACB34018.1| integration host factor, alpha subunit [Leptothrix cholodnii SP-6]
Length = 113
Score = 90.6 bits (224), Expect = 6e-17, Method: Composition-based stats.
Identities = 25/89 (28%), Positives = 45/89 (50%), Gaps = 1/89 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ L + ++ LN ++ + +V + + +AL G V++ GFG+F VR++A R
Sbjct: 15 TKAELAELLFERL-GLNKRESKDMVEAYFDFIHEALVRGEDVKLSGFGNFQVRRKAPRPG 73
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P + I + + V F A LK +
Sbjct: 74 RNPRTGEAIPIRARNVVTFHASHKLKAIV 102
>gi|332520714|ref|ZP_08397176.1| histone family protein DNA-binding protein [Lacinutrix algicola
5H-3-7-4]
gi|332044067|gb|EGI80262.1| histone family protein DNA-binding protein [Lacinutrix algicola
5H-3-7-4]
Length = 90
Score = 90.6 bits (224), Expect = 6e-17, Method: Composition-based stats.
Identities = 35/91 (38%), Positives = 50/91 (54%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI +A+ + + +K + L E+ AL G RV + GFGS+SV KRAAR
Sbjct: 1 MNKTDLIDAMAE-HAGITKAASKKALECALIEIEGALQKGDRVSLVGFGSWSVSKRAARD 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P K I ++ K V F+AG +L +N
Sbjct: 60 GRNPQTGKTIKIKAKNVVKFKAGSDLANAVN 90
>gi|77164655|ref|YP_343180.1| integration host factor subunit alpha [Nitrosococcus oceani ATCC
19707]
gi|254434600|ref|ZP_05048108.1| integration host factor, alpha subunit [Nitrosococcus oceani
AFC27]
gi|123594551|sp|Q3JBZ6|IHFA_NITOC RecName: Full=Integration host factor subunit alpha;
Short=IHF-alpha
gi|76882969|gb|ABA57650.1| Integration host factor, alpha subunit [Nitrosococcus oceani ATCC
19707]
gi|207090933|gb|EDZ68204.1| integration host factor, alpha subunit [Nitrosococcus oceani
AFC27]
Length = 99
Score = 90.6 bits (224), Expect = 6e-17, Method: Composition-based stats.
Identities = 28/89 (31%), Positives = 49/89 (55%), Gaps = 1/89 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ + T+ ++ LN ++ ++IV M E++ AL G V++ GFG+F +R + R
Sbjct: 4 TKADMTETLYQEL-GLNKREAKEIVEMFFEDIRCALEQGEAVKLSGFGNFELRDKGERPG 62
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P + I + + V FR G+ LK R+
Sbjct: 63 RNPKTGEEIPITARRVVTFRPGQKLKARV 91
>gi|302670433|ref|YP_003830393.1| DNA-binding protein [Butyrivibrio proteoclasticus B316]
gi|302394906|gb|ADL33811.1| DNA-binding protein [Butyrivibrio proteoclasticus B316]
Length = 92
Score = 90.6 bits (224), Expect = 6e-17, Method: Composition-based stats.
Identities = 33/93 (35%), Positives = 51/93 (54%), Gaps = 1/93 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI IAK+ L+ +D +N + +T+ L G+V++ GFG+F KRAAR
Sbjct: 1 MNKTELIDAIAKE-AGLSKKDAAAALNAFTDTVTKELKKKGKVQLVGFGTFETTKRAART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSP 93
+ P I + + P F+AGK LK+ +N
Sbjct: 60 GKNPQTGAAIKIPASVAPKFKAGKALKDLVNKK 92
>gi|255320840|ref|ZP_05362014.1| integration host factor, alpha subunit [Acinetobacter
radioresistens SK82]
gi|262380267|ref|ZP_06073422.1| integration host factor, alpha subunit [Acinetobacter
radioresistens SH164]
gi|255302009|gb|EET81252.1| integration host factor, alpha subunit [Acinetobacter
radioresistens SK82]
gi|262298461|gb|EEY86375.1| integration host factor, alpha subunit [Acinetobacter
radioresistens SH164]
Length = 98
Score = 90.6 bits (224), Expect = 6e-17, Method: Composition-based stats.
Identities = 25/92 (27%), Positives = 53/92 (57%), Gaps = 1/92 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ + +++ LN ++ +++V + +E++QAL G +V++ GFG+F +R + R
Sbjct: 5 TKAEMADHLSE-LTSLNRREAKQMVELFFDEISQALIAGEQVKLSGFGNFELRDKRQRPG 63
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLNSP 93
R P + I + + V FRAG+ ++R+ +
Sbjct: 64 RNPKTGEEIPISARRVVTFRAGQKFRQRVGNE 95
>gi|325661342|ref|ZP_08149968.1| hypothetical protein HMPREF0490_00701 [Lachnospiraceae bacterium
4_1_37FAA]
gi|325472291|gb|EGC75503.1| hypothetical protein HMPREF0490_00701 [Lachnospiraceae bacterium
4_1_37FAA]
Length = 91
Score = 90.6 bits (224), Expect = 6e-17, Method: Composition-based stats.
Identities = 30/91 (32%), Positives = 50/91 (54%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K LI ++ + L + +V +L+ +T L G +V I GFG+F VR+RA R+
Sbjct: 1 MNKLELIKEVSGRT-GLTQVATKDVVEAVLDVITNQLIKGEKVAIAGFGTFEVRERAERM 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + + + + F+AGK LK+++N
Sbjct: 60 GRNPQSGEEMLIAASKNVKFKAGKALKDKVN 90
>gi|294340016|emb|CAZ88380.1| integration host factor (IHF), alpha subunit [Thiomonas sp. 3As]
Length = 115
Score = 90.6 bits (224), Expect = 6e-17, Method: Composition-based stats.
Identities = 24/89 (26%), Positives = 45/89 (50%), Gaps = 1/89 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ L + ++ LN ++ + +V+ + + AL G V++ GFG F +R++A R
Sbjct: 15 TKAELAEQLYERI-GLNKRESKDMVDAFFDRVRDALGRGEDVKLSGFGHFQLREKAQRPG 73
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P ++I + + V F A K +L
Sbjct: 74 RNPRTGEIIPIAARRVVIFHASHKFKHQL 102
>gi|323436199|ref|ZP_01051348.2| DNA-binding protein HU-beta [Dokdonia donghaensis MED134]
gi|321496514|gb|EAQ37896.2| DNA-binding protein HU-beta [Dokdonia donghaensis MED134]
Length = 90
Score = 90.6 bits (224), Expect = 6e-17, Method: Composition-based stats.
Identities = 34/91 (37%), Positives = 47/91 (51%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI +A+ + + +K + L ++ L GGRV + GFGS+SV KR AR
Sbjct: 1 MNKSELIDGMAE-HAGITKAAAKKALESFLGDVEGTLKKGGRVSLVGFGSWSVSKRNARE 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P K I + K V F+AG L +N
Sbjct: 60 GRNPQTGKTIKIAAKNVVKFKAGSELASSVN 90
>gi|238790629|ref|ZP_04634394.1| DNA-binding protein HU-alpha [Yersinia frederiksenii ATCC 33641]
gi|238721298|gb|EEQ12973.1| DNA-binding protein HU-alpha [Yersinia frederiksenii ATCC 33641]
Length = 90
Score = 90.6 bits (224), Expect = 6e-17, Method: Composition-based stats.
Identities = 31/91 (34%), Positives = 46/91 (50%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI IA K L+ + + L +T++L +G V++ GFG+F V R R
Sbjct: 1 MNKTQLIDVIADK-ADLSKVQAKAALESTLAAITESLKDGDPVQLVGFGTFKVNHRNERT 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P K I + VP F +GK LK+ +
Sbjct: 60 GRNPQTGKEIKIAAANVPAFVSGKALKDSVK 90
>gi|89900136|ref|YP_522607.1| integration host factor subunit alpha [Rhodoferax ferrireducens
T118]
gi|123091398|sp|Q21YS7|IHFA_RHOFD RecName: Full=Integration host factor subunit alpha;
Short=IHF-alpha
gi|89344873|gb|ABD69076.1| integration host factor, alpha subunit [Rhodoferax ferrireducens
T118]
Length = 102
Score = 90.6 bits (224), Expect = 7e-17, Method: Composition-based stats.
Identities = 27/89 (30%), Positives = 48/89 (53%), Gaps = 1/89 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ L + +K LN ++ + +V+ + + +L G V+I GFG+F +R +A R
Sbjct: 5 TKAQLAELLFEKI-GLNKRESKDMVDAFFDLVADSLLKGEDVKISGFGNFQIRTKAPRPG 63
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P + I ++ + V F AG LKE++
Sbjct: 64 RNPRTGETIPIQARRVVTFHAGYKLKEQI 92
>gi|254427198|ref|ZP_05040905.1| DNA-binding protein HU [Alcanivorax sp. DG881]
gi|196193367|gb|EDX88326.1| DNA-binding protein HU [Alcanivorax sp. DG881]
Length = 85
Score = 90.6 bits (224), Expect = 7e-17, Method: Composition-based stats.
Identities = 31/85 (36%), Positives = 48/85 (56%), Gaps = 1/85 (1%)
Query: 7 IGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLARAPLA 66
I IA + ++ D + ++ LE +T AL G V + GFG+F+V++R AR R P
Sbjct: 2 IDAIAA-SADISKADAGRALDSTLEAVTGALKKGDSVSLVGFGTFAVKRREARDGRNPQT 60
Query: 67 QKVISVEEKMVPFFRAGKNLKERLN 91
+ I + VP F+AGK LK+ +N
Sbjct: 61 GQTIKIAAANVPGFKAGKALKDAVN 85
>gi|330009679|ref|ZP_08306553.1| integration host factor, alpha subunit [Klebsiella sp. MS 92-3]
gi|328534767|gb|EGF61323.1| integration host factor, alpha subunit [Klebsiella sp. MS 92-3]
Length = 94
Score = 90.6 bits (224), Expect = 7e-17, Method: Composition-based stats.
Identities = 28/91 (30%), Positives = 51/91 (56%), Gaps = 1/91 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ + + K L+ +D +++V + EE+ +AL NG +V++ GFG+F +R + R
Sbjct: 4 TKAEMSEYLFDKL-GLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 62
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P + I + + V FR G+ LK R+ +
Sbjct: 63 RNPKTGEDIPITARRVVTFRPGQKLKSRVEN 93
>gi|218702635|ref|YP_002410264.1| transcriptional regulator HU subunit alpha [Escherichia coli
IAI39]
gi|218372621|emb|CAR20496.1| HU, DNA-binding transcriptional regulator, alpha subunit
[Escherichia coli IAI39]
Length = 90
Score = 90.6 bits (224), Expect = 7e-17, Method: Composition-based stats.
Identities = 32/91 (35%), Positives = 48/91 (52%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI IA+K +L+ + + L +T++L G V++ GFG+F V RA R
Sbjct: 1 MNKTQLIDVIAEK-AELSKNQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERT 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P K I + VP F +GK LK+ +
Sbjct: 60 GRNPQTGKEIKIAAANVPAFVSGKALKDAVK 90
>gi|91223955|ref|ZP_01259219.1| integration host factor alpha subunit [Vibrio alginolyticus
12G01]
gi|262394474|ref|YP_003286328.1| integration host factor subunit alpha [Vibrio sp. Ex25]
gi|269966318|ref|ZP_06180405.1| integration host factor, alpha subunit [Vibrio alginolyticus 40B]
gi|91191447|gb|EAS77712.1| integration host factor alpha subunit [Vibrio alginolyticus
12G01]
gi|262338068|gb|ACY51863.1| integration host factor alpha subunit [Vibrio sp. Ex25]
gi|269829057|gb|EEZ83304.1| integration host factor, alpha subunit [Vibrio alginolyticus 40B]
Length = 98
Score = 90.6 bits (224), Expect = 7e-17, Method: Composition-based stats.
Identities = 27/94 (28%), Positives = 49/94 (52%), Gaps = 1/94 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ L + K + +D ++ V + EE+ +AL +G +V++ GFG+F +R + R
Sbjct: 4 TKAELAENLFDKL-GFSKRDAKETVEVFFEEIRKALESGEQVKLSGFGNFDLRDKNERPG 62
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDS 95
R P + I + + V FR G+ LK R+ +
Sbjct: 63 RNPKTGEDIPITARRVVTFRPGQKLKARVENLKK 96
>gi|26989194|ref|NP_744619.1| integration host factor subunit alpha [Pseudomonas putida KT2440]
gi|148548427|ref|YP_001268529.1| integration host factor subunit alpha [Pseudomonas putida F1]
gi|167034471|ref|YP_001669702.1| integration host factor subunit alpha [Pseudomonas putida GB-1]
gi|170721157|ref|YP_001748845.1| integration host factor subunit alpha [Pseudomonas putida W619]
gi|325276804|ref|ZP_08142506.1| integration host factor subunit alpha [Pseudomonas sp. TJI-51]
gi|60392431|sp|P0A126|IHFA_PSEPK RecName: Full=Integration host factor subunit alpha;
Short=IHF-alpha
gi|60392432|sp|P0A127|IHFA_PSEPU RecName: Full=Integration host factor subunit alpha;
Short=IHF-alpha
gi|166918517|sp|A5W5D5|IHFA_PSEP1 RecName: Full=Integration host factor subunit alpha;
Short=IHF-alpha
gi|189044704|sp|B0KKR2|IHFA_PSEPG RecName: Full=Integration host factor subunit alpha;
Short=IHF-alpha
gi|226709741|sp|B1J6V0|IHFA_PSEPW RecName: Full=Integration host factor subunit alpha;
Short=IHF-alpha
gi|24984034|gb|AAN68083.1|AE016440_3 integration host factor, alpha subunit [Pseudomonas putida
KT2440]
gi|1435199|gb|AAB04060.1| IhfA [Pseudomonas putida]
gi|148512485|gb|ABQ79345.1| integration host factor, alpha subunit [Pseudomonas putida F1]
gi|166860959|gb|ABY99366.1| integration host factor, alpha subunit [Pseudomonas putida GB-1]
gi|169759160|gb|ACA72476.1| integration host factor, alpha subunit [Pseudomonas putida W619]
gi|324098064|gb|EGB96208.1| integration host factor subunit alpha [Pseudomonas sp. TJI-51]
Length = 100
Score = 90.6 bits (224), Expect = 7e-17, Method: Composition-based stats.
Identities = 26/95 (27%), Positives = 50/95 (52%), Gaps = 1/95 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ + + ++ LN ++ +++V + EE+ AL +V++ GFG+F +R + R
Sbjct: 5 TKAEMAERLYEEL-GLNKREAKELVELFFEEIRHALEENEQVKLSGFGNFDLRDKRQRPG 63
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDST 96
R P + I + + V FR G+ LK R+ + T
Sbjct: 64 RNPKTGEEIPITARRVVTFRPGQKLKARVEAYAGT 98
>gi|315126783|ref|YP_004068786.1| DNA-binding protein [Pseudoalteromonas sp. SM9913]
gi|315015297|gb|ADT68635.1| DNA-binding protein [Pseudoalteromonas sp. SM9913]
Length = 89
Score = 90.6 bits (224), Expect = 7e-17, Method: Composition-based stats.
Identities = 26/90 (28%), Positives = 48/90 (53%), Gaps = 1/90 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ L+ +A +L ++ + + L + +T++L+ G +V+I GFG+F++ AR
Sbjct: 1 MNKAELVTAMA-HTSELTKKEAQLALTSLQKVITKSLSEGDQVQIYGFGTFALSYYPART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P + I +E F+ K LK+ L
Sbjct: 60 GRNPQTGEAIEIEGANKAVFKPAKALKDSL 89
>gi|89886013|ref|YP_516210.1| DNA-binding protein HU-beta [Sodalis phage phiSG1]
gi|89191748|dbj|BAE80495.1| DNA-binding protein HU-beta [Sodalis phage phiSG1]
gi|125470043|gb|ABN42235.1| gp28 [Sodalis phage phiSG1]
Length = 90
Score = 90.6 bits (224), Expect = 7e-17, Method: Composition-based stats.
Identities = 32/90 (35%), Positives = 53/90 (58%), Gaps = 1/90 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI +++K ++ +++ + + +TQ+LA+G V+I GFG+F V+ RA R
Sbjct: 1 MNKSHLIRAVSEKT-DISKIKAGFVIDAITDAVTQSLASGDDVKITGFGTFEVKTRAERP 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P + +++ VP FRA K LKE +
Sbjct: 60 GRNPKTGEAMTIPAARVPAFRARKGLKEAV 89
>gi|228969379|ref|ZP_04130226.1| DNA-binding protein HU [Bacillus thuringiensis serovar sotto str.
T04001]
gi|228790341|gb|EEM38081.1| DNA-binding protein HU [Bacillus thuringiensis serovar sotto str.
T04001]
Length = 90
Score = 90.6 bits (224), Expect = 7e-17, Method: Composition-based stats.
Identities = 31/91 (34%), Positives = 51/91 (56%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ L +A+K +L ++ +L+ +T ALAN +V+I FG+F VR+R+AR
Sbjct: 1 MNKTELTKVVAEK-AELTQKEAAAATQAVLDTITTALANEEKVQILRFGTFEVRERSART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + + + P F+AGK LK+ +
Sbjct: 60 GRNPQTGEEMQIAASKAPAFKAGKELKDAVK 90
>gi|330878102|gb|EGH12251.1| DNA-binding protein HU family [Pseudomonas syringae pv.
morsprunorum str. M302280PT]
Length = 92
Score = 90.6 bits (224), Expect = 7e-17, Method: Composition-based stats.
Identities = 29/92 (31%), Positives = 48/92 (52%), Gaps = 1/92 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K + IA+K L + +++N +LEE+T AL V + GFG+F R R AR
Sbjct: 1 MRKPDVAAAIAEK-ADLTKEQSNRVLNAILEEITGALHRKDSVTLVGFGTFLQRHRGART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
+ P + + ++ F+ GK LK+ +N+
Sbjct: 60 GKNPQTGEPVKIKASNTVAFKPGKALKDSVNN 91
>gi|322834808|ref|YP_004214835.1| histone family protein DNA-binding protein [Rahnella sp. Y9602]
gi|321170009|gb|ADW75708.1| histone family protein DNA-binding protein [Rahnella sp. Y9602]
Length = 90
Score = 90.6 bits (224), Expect = 7e-17, Method: Composition-based stats.
Identities = 31/91 (34%), Positives = 45/91 (49%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI IA K L+ + + L +T++L G V++ GFG+F V R R
Sbjct: 1 MNKTQLIDVIADK-ADLSKAQAKVALESTLSAITESLKEGDAVQLVGFGTFKVNHRNERT 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P K I + VP F +GK LK+ +
Sbjct: 60 GRNPQTGKEIKIAAANVPAFVSGKALKDAVK 90
>gi|303257389|ref|ZP_07343402.1| DNA-binding protein HU [Burkholderiales bacterium 1_1_47]
gi|302859746|gb|EFL82824.1| DNA-binding protein HU [Burkholderiales bacterium 1_1_47]
Length = 90
Score = 90.6 bits (224), Expect = 7e-17, Method: Composition-based stats.
Identities = 35/90 (38%), Positives = 54/90 (60%), Gaps = 1/90 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI +A K ++ ++ V+ +++ +T AL NG V++ GFG+FSV +RAAR
Sbjct: 1 MNKADLIEAVAIK-CDISKLAAQRAVDAMIDTITNALQNGKEVQLLGFGTFSVVERAARK 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R K I + + VP F AGKNLK+ +
Sbjct: 60 GRNLRTNKSIDIPARKVPKFVAGKNLKDVV 89
>gi|322419661|ref|YP_004198884.1| histone family protein DNA-binding protein [Geobacter sp. M18]
gi|320126048|gb|ADW13608.1| histone family protein DNA-binding protein [Geobacter sp. M18]
Length = 91
Score = 90.6 bits (224), Expect = 7e-17, Method: Composition-based stats.
Identities = 41/90 (45%), Positives = 60/90 (66%), Gaps = 1/90 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI ++A K L+++ E++VN + MT+AL +G R+EIRGFGSF V++ A
Sbjct: 1 MNKSELIESLAAKKA-LSFKKAEEVVNAVFASMTEALLSGDRIEIRGFGSFVVKEYDAYT 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P + ISV+ K +PFF+ GK LKE++
Sbjct: 60 GRNPKTGESISVKAKKLPFFKVGKELKEKV 89
>gi|317494900|ref|ZP_07953310.1| DNA-binding protein [Enterobacteriaceae bacterium 9_2_54FAA]
gi|316917088|gb|EFV38437.1| DNA-binding protein [Enterobacteriaceae bacterium 9_2_54FAA]
Length = 90
Score = 90.6 bits (224), Expect = 7e-17, Method: Composition-based stats.
Identities = 30/91 (32%), Positives = 45/91 (49%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI IA+K L+ + + L +T++L G V++ GFG+F V R R
Sbjct: 1 MNKTQLIDVIAEK-ADLSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRNERT 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P I + VP F +GK LK+ +
Sbjct: 60 GRNPQTGMEIKIAAANVPAFVSGKALKDAVK 90
>gi|77360840|ref|YP_340415.1| integration host factor (IHF), alpha subunit, DNA-bending
protein, DNA replication [Pseudoalteromonas
haloplanktis TAC125]
gi|123588704|sp|Q3IIL3|IHFA_PSEHT RecName: Full=Integration host factor subunit alpha;
Short=IHF-alpha
gi|76875751|emb|CAI86972.1| integration host factor (IHF), alpha subunit, DNA-bending
protein, DNA replication [Pseudoalteromonas
haloplanktis TAC125]
Length = 99
Score = 90.6 bits (224), Expect = 7e-17, Method: Composition-based stats.
Identities = 26/89 (29%), Positives = 47/89 (52%), Gaps = 1/89 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ + + +K +N +D + +V EE+ AL G ++++ GFG+F +R + R
Sbjct: 4 TKADIAEHLFEKL-GINKKDAKDLVEAFFEEIRSALEKGEQIKLSGFGNFDLRDKKERPG 62
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P + I + + V FR G+ LK R+
Sbjct: 63 RNPKTGEDIPISARRVVTFRPGQKLKTRV 91
>gi|303231969|ref|ZP_07318677.1| DNA-binding protein HU 1 [Veillonella atypica ACS-049-V-Sch6]
gi|302513398|gb|EFL55432.1| DNA-binding protein HU 1 [Veillonella atypica ACS-049-V-Sch6]
Length = 99
Score = 90.6 bits (224), Expect = 7e-17, Method: Composition-based stats.
Identities = 38/96 (39%), Positives = 61/96 (63%), Gaps = 1/96 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI ++A+K +L +D EK V + + + + LA GG+V++ GFG+F VR+RAAR
Sbjct: 1 MNKTELIASVAQKT-ELTKKDAEKAVKAVFDTVAEELAAGGKVQVIGFGTFEVRERAARE 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDST 96
R P I+++ P F+AGK LKE++N+ +
Sbjct: 60 GRNPQNGDTITIKASKSPAFKAGKGLKEQVNAAPAK 95
>gi|182677372|ref|YP_001831518.1| histone family protein DNA-binding protein [Beijerinckia indica
subsp. indica ATCC 9039]
gi|182633255|gb|ACB94029.1| histone family protein DNA-binding protein [Beijerinckia indica
subsp. indica ATCC 9039]
Length = 171
Score = 90.6 bits (224), Expect = 7e-17, Method: Composition-based stats.
Identities = 25/92 (27%), Positives = 46/92 (50%), Gaps = 1/92 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
+ L ++ ++ +D +++V +L E+T+AL G V + FG+F +R + R+
Sbjct: 73 TRKDLASSVYD-CIGISRKDADRLVTEVLSEITEALVRGENVRLASFGNFEIRAKTQRIG 131
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLNSP 93
R P + + V F+A K L +RLN
Sbjct: 132 RNPRTGVAAVIPPRRVLKFKASKVLLDRLNGD 163
>gi|294634213|ref|ZP_06712759.1| DNA-binding protein HU-beta [Edwardsiella tarda ATCC 23685]
gi|291092358|gb|EFE24919.1| DNA-binding protein HU-beta [Edwardsiella tarda ATCC 23685]
Length = 90
Score = 90.6 bits (224), Expect = 7e-17, Method: Composition-based stats.
Identities = 31/91 (34%), Positives = 45/91 (49%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI IA K L+ + + L +T++L G V++ GFG+F V R R
Sbjct: 1 MNKTQLIDVIADK-ADLSKTQAKAALESTLAAITESLKAGDAVQLVGFGTFKVNHRNERT 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P K I + VP F +GK LK+ +
Sbjct: 60 GRNPQTGKEIKIAAANVPAFVSGKALKDAVK 90
>gi|320355050|ref|YP_004196389.1| histone family protein DNA-binding protein [Desulfobulbus
propionicus DSM 2032]
gi|320123552|gb|ADW19098.1| histone family protein DNA-binding protein [Desulfobulbus
propionicus DSM 2032]
Length = 95
Score = 90.6 bits (224), Expect = 7e-17, Method: Composition-based stats.
Identities = 36/96 (37%), Positives = 56/96 (58%), Gaps = 1/96 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI +A+ + ++ I N ++E M+ ALA G +EIRGFGSF V++ +
Sbjct: 1 MNKSELIEALAEAM-NIPIREAASITNTIIETMSDALARGESIEIRGFGSFVVKEYESYT 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDST 96
R P + I V+ K +PFF+ GK+L+E++N
Sbjct: 60 GRNPKTGEKIKVKPKKLPFFKVGKDLREQVNKNSGK 95
>gi|228912344|ref|ZP_04076038.1| DNA-binding protein HU [Bacillus thuringiensis IBL 200]
gi|228847292|gb|EEM92252.1| DNA-binding protein HU [Bacillus thuringiensis IBL 200]
Length = 93
Score = 90.6 bits (224), Expect = 7e-17, Method: Composition-based stats.
Identities = 34/91 (37%), Positives = 52/91 (57%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ L +A+K L +D + +L+ +T ALAN +V+I GFG+F VR+R+AR
Sbjct: 4 MNKTELTKVVAEK-AVLTQKDADAATQAVLDTITSALANEEKVQILGFGTFEVRERSART 62
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + + + P F+AGK LKE +
Sbjct: 63 GRNPQTGEEMQIAASKAPAFKAGKELKEAVK 93
>gi|269125485|ref|YP_003298855.1| histone family protein DNA-binding protein [Thermomonospora
curvata DSM 43183]
gi|268310443|gb|ACY96817.1| histone family protein DNA-binding protein [Thermomonospora
curvata DSM 43183]
Length = 159
Score = 90.6 bits (224), Expect = 7e-17, Method: Composition-based stats.
Identities = 27/90 (30%), Positives = 43/90 (47%), Gaps = 1/90 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M ++ LI +A + + V+ + E + + G RV + GFG+F R AR
Sbjct: 1 MNRTELIEAVAA-LAGSDPAVARRHVDAVFETIMDRVTAGERVLVTGFGTFDKLSRPART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
AR P + + V P FRAG+ K+R+
Sbjct: 60 ARNPRTGEPVEVPPTETPRFRAGQTFKDRV 89
>gi|225076633|ref|ZP_03719832.1| hypothetical protein NEIFLAOT_01683 [Neisseria flavescens
NRL30031/H210]
gi|241758592|ref|ZP_04756707.1| integration host factor, alpha subunit [Neisseria flavescens
SK114]
gi|261379897|ref|ZP_05984470.1| integration host factor, alpha subunit [Neisseria subflava
NJ9703]
gi|319637854|ref|ZP_07992620.1| integration host factor subunit alpha [Neisseria mucosa C102]
gi|224952039|gb|EEG33248.1| hypothetical protein NEIFLAOT_01683 [Neisseria flavescens
NRL30031/H210]
gi|241321244|gb|EER57416.1| integration host factor, alpha subunit [Neisseria flavescens
SK114]
gi|284797599|gb|EFC52946.1| integration host factor, alpha subunit [Neisseria subflava
NJ9703]
gi|317401009|gb|EFV81664.1| integration host factor subunit alpha [Neisseria mucosa C102]
Length = 100
Score = 90.6 bits (224), Expect = 7e-17, Method: Composition-based stats.
Identities = 25/89 (28%), Positives = 43/89 (48%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ L + K + D ++IV + EE+ LA G ++I GFG+F +R + R
Sbjct: 4 TKAELADILVDKVSNVTKNDAKEIVELFFEEIRSTLARGEEIKISGFGNFQLRDKPQRPG 63
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P + + + + V F A + LK +
Sbjct: 64 RNPKTGEEVPITARRVVTFHASQKLKGMV 92
>gi|21672575|ref|NP_660642.1| integration host factor beta subunit [Buchnera aphidicola str. Sg
(Schizaphis graminum)]
gi|2495248|sp|Q44654|IHFB_BUCAP RecName: Full=Integration host factor subunit beta;
Short=IHF-beta
gi|1448955|gb|AAC05430.1| integration host factor beta subunit [Buchnera aphidicola]
gi|21623203|gb|AAM67853.1| integration host factor beta subunit [Buchnera aphidicola str. Sg
(Schizaphis graminum)]
Length = 93
Score = 90.6 bits (224), Expect = 7e-17, Method: Composition-based stats.
Identities = 35/93 (37%), Positives = 59/93 (63%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS L IA++ ++ + +E V +LE ++ +L+ G R+EIRGFG+FS+ R++R+
Sbjct: 1 MTKSELFERIAERKAHISNKIIECAVKEMLEYISISLSKGKRIEIRGFGTFSLHYRSSRI 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSP 93
R P K I + E+ +P+F+ GK L++R N
Sbjct: 61 GRNPKTGKKIKLNERYIPYFKPGKQLRDRANYK 93
>gi|118577357|ref|YP_899597.1| histone family protein DNA-binding protein [Pelobacter
propionicus DSM 2379]
gi|118504862|gb|ABL01344.1| histone family protein DNA-binding protein [Pelobacter
propionicus DSM 2379]
Length = 101
Score = 90.2 bits (223), Expect = 7e-17, Method: Composition-based stats.
Identities = 24/99 (24%), Positives = 50/99 (50%), Gaps = 1/99 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ + ++ + ++ +V +L M LA+G R++I GFG F+V+++ R
Sbjct: 1 MTKADITEKVSN-TIGVPKREAADLVETVLSIMKDTLASGERIKISGFGCFNVKQKTDRR 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDSTLSN 99
R P + +++ + V F+ L++ +NS S+
Sbjct: 60 GRNPQTGERLTISARRVLTFKPSSILRDAINSVTDDSSS 98
>gi|163756383|ref|ZP_02163497.1| fumarate hydratase [Kordia algicida OT-1]
gi|161323735|gb|EDP95070.1| fumarate hydratase [Kordia algicida OT-1]
Length = 101
Score = 90.2 bits (223), Expect = 7e-17, Method: Composition-based stats.
Identities = 33/91 (36%), Positives = 49/91 (53%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI +A + ++ +K + L + AL G RV + GFGS+SV +RAAR
Sbjct: 12 MNKTELIDAMAA-DAGISKAAAKKSLESFLGNVEGALKKGDRVSLVGFGSWSVSERAARE 70
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P K I + K V F+AG +L + +N
Sbjct: 71 GRNPQTGKTIQIAAKKVVKFKAGSDLGKAVN 101
>gi|50086053|ref|YP_047563.1| integration host factor subunit alpha [Acinetobacter sp. ADP1]
gi|81695762|sp|Q6F874|IHFA_ACIAD RecName: Full=Integration host factor subunit alpha;
Short=IHF-alpha
gi|49532029|emb|CAG69741.1| integration host factor (IHF), alpha subunit, DNA-binding
protein, DNA replication [Acinetobacter sp. ADP1]
Length = 97
Score = 90.2 bits (223), Expect = 7e-17, Method: Composition-based stats.
Identities = 25/89 (28%), Positives = 51/89 (57%), Gaps = 1/89 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ + +++ LN ++ +++V + +E++QAL G V++ GFG+F +R + R
Sbjct: 5 TKADMADHLSE-LTSLNRREAKQMVELFFDEISQALIAGEHVKLSGFGNFELRDKRERPG 63
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P + I + + V FRAG+ ++R+
Sbjct: 64 RNPKTGEEIPISARRVVTFRAGQKFRQRV 92
>gi|148264197|ref|YP_001230903.1| histone family protein DNA-binding protein [Geobacter
uraniireducens Rf4]
gi|146397697|gb|ABQ26330.1| histone family protein DNA-binding protein [Geobacter
uraniireducens Rf4]
Length = 91
Score = 90.2 bits (223), Expect = 7e-17, Method: Composition-based stats.
Identities = 41/90 (45%), Positives = 59/90 (65%), Gaps = 1/90 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI +A K L+Y+ E+I+N++ + MT AL +G R+EIRGFGSF V+ A
Sbjct: 1 MNKSELIEALATK-KGLSYKKAEEIINVIFDSMTNALLDGDRIEIRGFGSFVVKGYQAYT 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P + I+V+ K +PFF+ GK LKE++
Sbjct: 60 GRNPKTGESIAVKSKKLPFFKVGKELKEKV 89
>gi|262374865|ref|ZP_06068099.1| integration host factor, alpha subunit [Acinetobacter lwoffii
SH145]
gi|262309878|gb|EEY91007.1| integration host factor, alpha subunit [Acinetobacter lwoffii
SH145]
Length = 98
Score = 90.2 bits (223), Expect = 8e-17, Method: Composition-based stats.
Identities = 25/92 (27%), Positives = 54/92 (58%), Gaps = 1/92 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ + +++ LN ++ +++V + +E++QAL +G +V++ GFG+F +R + R
Sbjct: 5 TKAEMADHLSE-LTSLNRREAKQMVELFFDEISQALISGEQVKLSGFGNFELRDKRQRPG 63
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLNSP 93
R P + I + + V FRAG+ ++R+ +
Sbjct: 64 RNPKTGEEIPISARRVVTFRAGQKFRQRVGNE 95
>gi|158340410|ref|YP_001521766.1| DNA-binding protein HU [Acaryochloris marina MBIC11017]
gi|158310651|gb|ABW32265.1| DNA-binding protein HU [Acaryochloris marina MBIC11017]
Length = 91
Score = 90.2 bits (223), Expect = 8e-17, Method: Composition-based stats.
Identities = 29/91 (31%), Positives = 45/91 (49%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K L+ IA N + + + I+ L E + + +++G + + GFGSF R R AR
Sbjct: 1 MNKGELVDEIAD-NAGVTKKQADTILTALTETIMETVSSGDKDSLVGFGSFEARDRKARD 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P K + + P F AGK KE++
Sbjct: 60 GRNPRTGKKLKIPATKAPVFSAGKVFKEKVK 90
>gi|315126233|ref|YP_004068236.1| integration host factor (IHF), alpha subunit, DNA-bending
protein, DNA replication [Pseudoalteromonas sp. SM9913]
gi|315014747|gb|ADT68085.1| integration host factor (IHF), alpha subunit, DNA-bending
protein, DNA replication [Pseudoalteromonas sp. SM9913]
Length = 98
Score = 90.2 bits (223), Expect = 8e-17, Method: Composition-based stats.
Identities = 26/89 (29%), Positives = 47/89 (52%), Gaps = 1/89 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ + + +K +N +D + +V EE+ AL G ++++ GFG+F +R + R
Sbjct: 4 TKADIAEHLFEKL-GINKKDAKDLVEAFFEEIRSALEKGEQIKLSGFGNFDLRDKKERPG 62
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P + I + + V FR G+ LK R+
Sbjct: 63 RNPKTGEDIPISARRVVTFRPGQKLKTRV 91
>gi|85058119|ref|YP_453821.1| transcriptional regulator HU subunit alpha [Sodalis glossinidius
str. 'morsitans']
gi|84778639|dbj|BAE73416.1| DNA-binding protein HU-alpha (HU-2) [Sodalis glossinidius str.
'morsitans']
Length = 90
Score = 90.2 bits (223), Expect = 8e-17, Method: Composition-based stats.
Identities = 30/91 (32%), Positives = 46/91 (50%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI IA K L+ + + L +T++L G V++ GFG+F + R+ R
Sbjct: 1 MNKTQLIDVIADK-ADLSKAQAKSALESTLAAITESLKEGDAVQLVGFGTFKINHRSERT 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P K I + VP F +GK LK+ +
Sbjct: 60 GRNPQTGKEIKIAAANVPVFVSGKALKDAVK 90
>gi|119489368|ref|ZP_01622148.1| Histone-like DNA-binding protein [Lyngbya sp. PCC 8106]
gi|119454641|gb|EAW35787.1| Histone-like DNA-binding protein [Lyngbya sp. PCC 8106]
Length = 98
Score = 90.2 bits (223), Expect = 8e-17, Method: Composition-based stats.
Identities = 28/99 (28%), Positives = 51/99 (51%), Gaps = 1/99 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K L+ +A++ + + + ++ L+ + +A++ +V + GFGSF R+R AR
Sbjct: 1 MNKGELVDAVAER-ASVTKKQADAVLTAALDTVMEAVSRNDKVTLVGFGSFESRERKARE 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDSTLSN 99
R P + + + VP F AGK KE++ S +T
Sbjct: 60 GRNPKTGEKMDIPATRVPAFSAGKLFKEKVASKATTKEE 98
>gi|331001373|ref|ZP_08324997.1| DNA-binding protein HU-beta [Parasutterella excrementihominis YIT
11859]
gi|329568632|gb|EGG50434.1| DNA-binding protein HU-beta [Parasutterella excrementihominis YIT
11859]
Length = 91
Score = 90.2 bits (223), Expect = 8e-17, Method: Composition-based stats.
Identities = 35/90 (38%), Positives = 54/90 (60%), Gaps = 1/90 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI +A K ++ ++ V+ +++ +T AL NG V++ GFG+FSV +RAAR
Sbjct: 2 MNKADLIEAVAIK-CDISKLAAQRAVDAMIDTITNALQNGKEVQLLGFGTFSVVERAARK 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R K I + + VP F AGKNLK+ +
Sbjct: 61 GRNLRTNKSIDIPARKVPKFVAGKNLKDVV 90
>gi|56477449|ref|YP_159038.1| DNA-binding protein HU-alpha [Aromatoleum aromaticum EbN1]
gi|56313492|emb|CAI08137.1| DNA-binding protein hu-alpha [Aromatoleum aromaticum EbN1]
Length = 92
Score = 90.2 bits (223), Expect = 8e-17, Method: Composition-based stats.
Identities = 28/93 (30%), Positives = 46/93 (49%), Gaps = 1/93 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K + +A + ++ ++ ++ +L+ + + +A G +V GFGSF V +RA R
Sbjct: 1 MNKGEFVEALADRL-DVSRAQADRALSTVLDIIVERMAAGEKVAFTGFGSFEVSERAERT 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSP 93
R P I + VP F AG LK +NS
Sbjct: 60 GRNPQTGASIKIAASRVPKFSAGATLKTAINSK 92
>gi|15802124|ref|NP_288146.1| integration host factor subunit alpha [Escherichia coli O157:H7
EDL933]
gi|15831673|ref|NP_310446.1| integration host factor subunit alpha [Escherichia coli O157:H7
str. Sakai]
gi|16129668|ref|NP_416227.1| integration host factor (IHF), DNA-binding protein, alpha subunit
[Escherichia coli str. K-12 substr. MG1655]
gi|24112892|ref|NP_707402.1| integration host factor subunit alpha [Shigella flexneri 2a str.
301]
gi|26247964|ref|NP_754004.1| integration host factor subunit alpha [Escherichia coli CFT073]
gi|30063021|ref|NP_837192.1| integration host factor subunit alpha [Shigella flexneri 2a str.
2457T]
gi|74311968|ref|YP_310387.1| integration host factor subunit alpha [Shigella sonnei Ss046]
gi|82543885|ref|YP_407832.1| integration host factor subunit alpha [Shigella boydii Sb227]
gi|82777060|ref|YP_403409.1| integration host factor subunit alpha [Shigella dysenteriae
Sd197]
gi|89108552|ref|AP_002332.1| integration host factor (IHF), DNA-binding protein, alpha subunit
[Escherichia coli str. K-12 substr. W3110]
gi|91210926|ref|YP_540912.1| integration host factor subunit alpha [Escherichia coli UTI89]
gi|110641834|ref|YP_669564.1| integration host factor subunit alpha [Escherichia coli 536]
gi|110805478|ref|YP_688998.1| integration host factor subunit alpha [Shigella flexneri 5 str.
8401]
gi|157159273|ref|YP_001463009.1| integration host factor subunit alpha [Escherichia coli E24377A]
gi|168749471|ref|ZP_02774493.1| integration host factor, alpha subunit [Escherichia coli O157:H7
str. EC4113]
gi|168756713|ref|ZP_02781720.1| integration host factor, alpha subunit [Escherichia coli O157:H7
str. EC4401]
gi|168762224|ref|ZP_02787231.1| integration host factor, alpha subunit [Escherichia coli O157:H7
str. EC4501]
gi|168770473|ref|ZP_02795480.1| integration host factor, alpha subunit [Escherichia coli O157:H7
str. EC4486]
gi|168774987|ref|ZP_02799994.1| integration host factor, alpha subunit [Escherichia coli O157:H7
str. EC4196]
gi|168782127|ref|ZP_02807134.1| integration host factor, alpha subunit [Escherichia coli O157:H7
str. EC4076]
gi|168788108|ref|ZP_02813115.1| integration host factor, alpha subunit [Escherichia coli O157:H7
str. EC869]
gi|168800107|ref|ZP_02825114.1| integration host factor, alpha subunit [Escherichia coli O157:H7
str. EC508]
gi|170019938|ref|YP_001724892.1| integration host factor subunit alpha [Escherichia coli ATCC
8739]
gi|170081371|ref|YP_001730691.1| integration host factor (IHF), DNA-binding protein, alpha subunit
[Escherichia coli str. K-12 substr. DH10B]
gi|170681870|ref|YP_001743536.1| integration host factor subunit alpha [Escherichia coli SMS-3-5]
gi|170768840|ref|ZP_02903293.1| integration host factor, alpha subunit [Escherichia albertii
TW07627]
gi|187732420|ref|YP_001880502.1| integration host factor subunit alpha [Shigella boydii CDC
3083-94]
gi|188496090|ref|ZP_03003360.1| integration host factor, alpha subunit [Escherichia coli 53638]
gi|191167868|ref|ZP_03029673.1| integration host factor, alpha subunit [Escherichia coli B7A]
gi|191171631|ref|ZP_03033178.1| integration host factor, alpha subunit [Escherichia coli F11]
gi|193065297|ref|ZP_03046369.1| integration host factor, alpha subunit [Escherichia coli E22]
gi|193068941|ref|ZP_03049900.1| integration host factor, alpha subunit [Escherichia coli E110019]
gi|194428516|ref|ZP_03061055.1| integration host factor, alpha subunit [Escherichia coli B171]
gi|194435140|ref|ZP_03067374.1| integration host factor, alpha subunit [Shigella dysenteriae
1012]
gi|194438513|ref|ZP_03070602.1| integration host factor, alpha subunit [Escherichia coli 101-1]
gi|195937396|ref|ZP_03082778.1| integration host factor subunit alpha [Escherichia coli O157:H7
str. EC4024]
gi|208810559|ref|ZP_03252435.1| integration host factor, alpha subunit [Escherichia coli O157:H7
str. EC4206]
gi|208816579|ref|ZP_03257699.1| integration host factor, alpha subunit [Escherichia coli O157:H7
str. EC4045]
gi|208820964|ref|ZP_03261284.1| integration host factor, alpha subunit [Escherichia coli O157:H7
str. EC4042]
gi|209399095|ref|YP_002270782.1| integration host factor, alpha subunit [Escherichia coli O157:H7
str. EC4115]
gi|209919072|ref|YP_002293156.1| integration host factor subunit alpha [Escherichia coli SE11]
gi|215486931|ref|YP_002329362.1| integration host factor subunit alpha [Escherichia coli O127:H6
str. E2348/69]
gi|217328779|ref|ZP_03444860.1| integration host factor, alpha subunit [Escherichia coli O157:H7
str. TW14588]
gi|218548716|ref|YP_002382507.1| integration host factor subunit alpha [Escherichia fergusonii
ATCC 35469]
gi|218554280|ref|YP_002387193.1| integration host factor subunit alpha [Escherichia coli IAI1]
gi|218558582|ref|YP_002391495.1| integration host factor subunit alpha [Escherichia coli S88]
gi|218689657|ref|YP_002397869.1| integration host factor subunit alpha [Escherichia coli ED1a]
gi|218695274|ref|YP_002402941.1| integration host factor subunit alpha [Escherichia coli 55989]
gi|218699720|ref|YP_002407349.1| integration host factor subunit alpha [Escherichia coli IAI39]
gi|218705212|ref|YP_002412731.1| integration host factor subunit alpha [Escherichia coli UMN026]
gi|227885866|ref|ZP_04003671.1| integration host factor subunit alpha [Escherichia coli 83972]
gi|237705660|ref|ZP_04536141.1| integration host factor subunit alpha [Escherichia sp. 3_2_53FAA]
gi|238900927|ref|YP_002926723.1| integration host factor (IHF), DNA-binding protein, alpha subunit
[Escherichia coli BW2952]
gi|253773333|ref|YP_003036164.1| integration host factor subunit alpha [Escherichia coli
'BL21-Gold(DE3)pLysS AG']
gi|254161772|ref|YP_003044880.1| integration host factor subunit alpha [Escherichia coli B str.
REL606]
gi|254793329|ref|YP_003078166.1| integration host factor subunit alpha [Escherichia coli O157:H7
str. TW14359]
gi|256018094|ref|ZP_05431959.1| integration host factor subunit alpha [Shigella sp. D9]
gi|256022624|ref|ZP_05436489.1| integration host factor subunit alpha [Escherichia sp. 4_1_40B]
gi|260844064|ref|YP_003221842.1| integration host factor, alpha subunit [Escherichia coli O103:H2
str. 12009]
gi|260855578|ref|YP_003229469.1| integration host factor, alpha subunit [Escherichia coli O26:H11
str. 11368]
gi|260868239|ref|YP_003234641.1| integration host factor, alpha subunit [Escherichia coli O111:H-
str. 11128]
gi|261227795|ref|ZP_05942076.1| integration host factor (IHF), DNA-binding protein, alpha subunit
[Escherichia coli O157:H7 str. FRIK2000]
gi|261258040|ref|ZP_05950573.1| integration host factor, alpha subunit [Escherichia coli O157:H7
str. FRIK966]
gi|283785064|ref|YP_003364929.1| Integration host factor alpha subunit [Citrobacter rodentium
ICC168]
gi|291282892|ref|YP_003499710.1| Integration host factor subunit alpha [Escherichia coli O55:H7
str. CB9615]
gi|293405211|ref|ZP_06649203.1| integration host factor subunit alpha [Escherichia coli FVEC1412]
gi|293410028|ref|ZP_06653604.1| integration host factor [Escherichia coli B354]
gi|293415031|ref|ZP_06657674.1| integration host factor [Escherichia coli B185]
gi|293446087|ref|ZP_06662509.1| integration host factor [Escherichia coli B088]
gi|297516677|ref|ZP_06935063.1| integration host factor subunit alpha [Escherichia coli OP50]
gi|298380854|ref|ZP_06990453.1| integration host factor subunit alpha [Escherichia coli FVEC1302]
gi|300818351|ref|ZP_07098561.1| integration host factor, alpha subunit [Escherichia coli MS
107-1]
gi|300821414|ref|ZP_07101561.1| integration host factor, alpha subunit [Escherichia coli MS
119-7]
gi|300898500|ref|ZP_07116837.1| integration host factor, alpha subunit [Escherichia coli MS
198-1]
gi|300904568|ref|ZP_07122405.1| integration host factor, alpha subunit [Escherichia coli MS 84-1]
gi|300917726|ref|ZP_07134375.1| integration host factor, alpha subunit [Escherichia coli MS
115-1]
gi|300924754|ref|ZP_07140696.1| integration host factor, alpha subunit [Escherichia coli MS
182-1]
gi|300930812|ref|ZP_07146184.1| integration host factor, alpha subunit [Escherichia coli MS
187-1]
gi|300938954|ref|ZP_07153655.1| integration host factor, alpha subunit [Escherichia coli MS 21-1]
gi|300951312|ref|ZP_07165156.1| integration host factor, alpha subunit [Escherichia coli MS
116-1]
gi|300958601|ref|ZP_07170726.1| integration host factor, alpha subunit [Escherichia coli MS
175-1]
gi|300987621|ref|ZP_07178293.1| integration host factor, alpha subunit [Escherichia coli MS
200-1]
gi|300994425|ref|ZP_07180930.1| integration host factor, alpha subunit [Escherichia coli MS 45-1]
gi|301025263|ref|ZP_07188828.1| integration host factor, alpha subunit [Escherichia coli MS
196-1]
gi|301026993|ref|ZP_07190380.1| integration host factor, alpha subunit [Escherichia coli MS 69-1]
gi|301050951|ref|ZP_07197800.1| integration host factor, alpha subunit [Escherichia coli MS
185-1]
gi|301306645|ref|ZP_07212704.1| integration host factor, alpha subunit [Escherichia coli MS
124-1]
gi|301327442|ref|ZP_07220677.1| integration host factor, alpha subunit [Escherichia coli MS 78-1]
gi|301647903|ref|ZP_07247680.1| integration host factor, alpha subunit [Escherichia coli MS
146-1]
gi|306815034|ref|ZP_07449190.1| integration host factor subunit alpha [Escherichia coli NC101]
gi|307138372|ref|ZP_07497728.1| integration host factor subunit alpha [Escherichia coli H736]
gi|307310717|ref|ZP_07590363.1| integration host factor, alpha subunit [Escherichia coli W]
gi|309788459|ref|ZP_07683063.1| integration host factor, alpha subunit [Shigella dysenteriae
1617]
gi|309793482|ref|ZP_07687909.1| integration host factor, alpha subunit [Escherichia coli MS
145-7]
gi|312966915|ref|ZP_07781133.1| integration host factor, alpha subunit [Escherichia coli 2362-75]
gi|331642310|ref|ZP_08343445.1| integration host factor, alpha subunit [Escherichia coli H736]
gi|331647204|ref|ZP_08348298.1| integration host factor, alpha subunit [Escherichia coli M605]
gi|331653113|ref|ZP_08354118.1| integration host factor, alpha subunit [Escherichia coli M718]
gi|331657693|ref|ZP_08358655.1| integration host factor, alpha subunit [Escherichia coli TA206]
gi|331663192|ref|ZP_08364102.1| integration host factor, alpha subunit [Escherichia coli TA143]
gi|331668398|ref|ZP_08369246.1| integration host factor, alpha subunit [Escherichia coli TA271]
gi|331673265|ref|ZP_08374033.1| integration host factor, alpha subunit [Escherichia coli TA280]
gi|331677586|ref|ZP_08378261.1| integration host factor, alpha subunit [Escherichia coli H591]
gi|331683219|ref|ZP_08383820.1| integration host factor, alpha subunit [Escherichia coli H299]
gi|332279137|ref|ZP_08391550.1| integration host factor subunit alpha [Shigella sp. D9]
gi|67466106|sp|P0A6X7|IHFA_ECOLI RecName: Full=Integration host factor subunit alpha;
Short=IHF-alpha
gi|67466109|sp|P0A6X8|IHFA_ECOL6 RecName: Full=Integration host factor subunit alpha;
Short=IHF-alpha
gi|67466110|sp|P0A6X9|IHFA_ECO57 RecName: Full=Integration host factor subunit alpha;
Short=IHF-alpha
gi|67466111|sp|P0A6Y0|IHFA_SHIFL RecName: Full=Integration host factor subunit alpha;
Short=IHF-alpha
gi|122958311|sp|Q0THB6|IHFA_ECOL5 RecName: Full=Integration host factor subunit alpha;
Short=IHF-alpha
gi|123084460|sp|Q1RB83|IHFA_ECOUT RecName: Full=Integration host factor subunit alpha;
Short=IHF-alpha
gi|123342866|sp|Q0T4S2|IHFA_SHIF8 RecName: Full=Integration host factor subunit alpha;
Short=IHF-alpha
gi|123742132|sp|Q32FI7|IHFA_SHIDS RecName: Full=Integration host factor subunit alpha;
Short=IHF-alpha
gi|123769448|sp|Q321K4|IHFA_SHIBS RecName: Full=Integration host factor subunit alpha;
Short=IHF-alpha
gi|123773516|sp|Q3Z260|IHFA_SHISS RecName: Full=Integration host factor subunit alpha;
Short=IHF-alpha
gi|166918502|sp|A7ZMI0|IHFA_ECO24 RecName: Full=Integration host factor subunit alpha;
Short=IHF-alpha
gi|189044701|sp|B1IPL5|IHFA_ECOLC RecName: Full=Integration host factor subunit alpha;
Short=IHF-alpha
gi|226707374|sp|B7MAS3|IHFA_ECO45 RecName: Full=Integration host factor subunit alpha;
Short=IHF-alpha
gi|226707854|sp|B5YQ00|IHFA_ECO5E RecName: Full=Integration host factor subunit alpha;
Short=IHF-alpha
gi|226709722|sp|B7NT64|IHFA_ECO7I RecName: Full=Integration host factor subunit alpha;
Short=IHF-alpha
gi|226709723|sp|B7M1C1|IHFA_ECO8A RecName: Full=Integration host factor subunit alpha;
Short=IHF-alpha
gi|226709724|sp|B1XG19|IHFA_ECODH RecName: Full=Integration host factor subunit alpha;
Short=IHF-alpha
gi|226709725|sp|B7N550|IHFA_ECOLU RecName: Full=Integration host factor subunit alpha;
Short=IHF-alpha
gi|226709726|sp|B6I8Q5|IHFA_ECOSE RecName: Full=Integration host factor subunit alpha;
Short=IHF-alpha
gi|226709727|sp|B1LE18|IHFA_ECOSM RecName: Full=Integration host factor subunit alpha;
Short=IHF-alpha
gi|226709729|sp|B7LQ77|IHFA_ESCF3 RecName: Full=Integration host factor subunit alpha;
Short=IHF-alpha
gi|226709755|sp|B2U390|IHFA_SHIB3 RecName: Full=Integration host factor subunit alpha;
Short=IHF-alpha
gi|254803514|sp|B7US95|IHFA_ECO27 RecName: Full=Integration host factor subunit alpha;
Short=IHF-alpha
gi|254803515|sp|B7L6I5|IHFA_ECO55 RecName: Full=Integration host factor subunit alpha;
Short=IHF-alpha
gi|254803516|sp|B7MVJ1|IHFA_ECO81 RecName: Full=Integration host factor subunit alpha;
Short=IHF-alpha
gi|259491530|sp|C4ZYH4|IHFA_ECOBW RecName: Full=Integration host factor subunit alpha;
Short=IHF-alpha
gi|1942275|pdb|1IHF|A Chain A, Integration Host FactorDNA COMPLEX
gi|34811459|pdb|1OUZ|A Chain A, Crystal Structure Of A Mutant Ihf (Betae44a) Complexed
With A Variant H' Site (T44a)
gi|34811464|pdb|1OWF|A Chain A, Crystal Structure Of A Mutant Ihf (Betae44a) Complexed
With The Native H' Site
gi|34811469|pdb|1OWG|A Chain A, Crystal Structure Of Wt Ihf Complexed With An Altered H'
Site (T44a)
gi|119389941|pdb|2HT0|A Chain A, Ihf Bound To Doubly Nicked Dna
gi|12515723|gb|AAG56699.1|AE005394_8 integration host factor (IHF), alpha subunit; site specific
recombination [Escherichia coli O157:H7 str. EDL933]
gi|26108367|gb|AAN80569.1|AE016761_144 Integration host factor alpha-subunit [Escherichia coli CFT073]
gi|43072|emb|CAA23566.1| unnamed protein product [Escherichia coli]
gi|146347|gb|AAA51471.1| integration host factor alpha subunit [Escherichia coli]
gi|1742792|dbj|BAA15480.1| integration host factor (IHF), DNA-binding protein, alpha subunit
[Escherichia coli str. K12 substr. W3110]
gi|1788005|gb|AAC74782.1| integration host factor (IHF), DNA-binding protein, alpha subunit
[Escherichia coli str. K-12 substr. MG1655]
gi|13361886|dbj|BAB35842.1| integration host factor IHF alpha subunit [Escherichia coli
O157:H7 str. Sakai]
gi|24051836|gb|AAN43109.1| integration host factor (IHF), alpha subunit [Shigella flexneri
2a str. 301]
gi|30041270|gb|AAP16999.1| integration host factor (IHF), alpha subunit [Shigella flexneri
2a str. 2457T]
gi|68304092|gb|AAY89704.1| IhfA [Escherichia coli LW1655F+]
gi|73855445|gb|AAZ88152.1| integration host factor (IHF), alpha subunit [Shigella sonnei
Ss046]
gi|81241208|gb|ABB61918.1| integration host factor, alpha subunit [Shigella dysenteriae
Sd197]
gi|81245296|gb|ABB66004.1| integration host factor, alpha subunit [Shigella boydii Sb227]
gi|91072500|gb|ABE07381.1| integration host factor (IHF), alpha subunit [Escherichia coli
UTI89]
gi|110343426|gb|ABG69663.1| integration host factor alpha-subunit [Escherichia coli 536]
gi|110615026|gb|ABF03693.1| integration host factor alpha subunit [Shigella flexneri 5 str.
8401]
gi|157081303|gb|ABV21011.1| integration host factor, alpha subunit [Escherichia coli E24377A]
gi|169754866|gb|ACA77565.1| integration host factor, alpha subunit [Escherichia coli ATCC
8739]
gi|169889206|gb|ACB02913.1| integration host factor (IHF), DNA-binding protein, alpha subunit
[Escherichia coli str. K-12 substr. DH10B]
gi|170122388|gb|EDS91319.1| integration host factor, alpha subunit [Escherichia albertii
TW07627]
gi|170519588|gb|ACB17766.1| integration host factor, alpha subunit [Escherichia coli SMS-3-5]
gi|187429412|gb|ACD08686.1| integration host factor, alpha subunit [Shigella boydii CDC
3083-94]
gi|187769469|gb|EDU33313.1| integration host factor, alpha subunit [Escherichia coli O157:H7
str. EC4196]
gi|188016292|gb|EDU54414.1| integration host factor, alpha subunit [Escherichia coli O157:H7
str. EC4113]
gi|188491289|gb|EDU66392.1| integration host factor, alpha subunit [Escherichia coli 53638]
gi|189000264|gb|EDU69250.1| integration host factor, alpha subunit [Escherichia coli O157:H7
str. EC4076]
gi|189356221|gb|EDU74640.1| integration host factor, alpha subunit [Escherichia coli O157:H7
str. EC4401]
gi|189360623|gb|EDU79042.1| integration host factor, alpha subunit [Escherichia coli O157:H7
str. EC4486]
gi|189367513|gb|EDU85929.1| integration host factor, alpha subunit [Escherichia coli O157:H7
str. EC4501]
gi|189371962|gb|EDU90378.1| integration host factor, alpha subunit [Escherichia coli O157:H7
str. EC869]
gi|189377579|gb|EDU95995.1| integration host factor, alpha subunit [Escherichia coli O157:H7
str. EC508]
gi|190902127|gb|EDV61871.1| integration host factor, alpha subunit [Escherichia coli B7A]
gi|190907961|gb|EDV67553.1| integration host factor, alpha subunit [Escherichia coli F11]
gi|192927091|gb|EDV81713.1| integration host factor, alpha subunit [Escherichia coli E22]
gi|192957736|gb|EDV88180.1| integration host factor, alpha subunit [Escherichia coli E110019]
gi|194413394|gb|EDX29677.1| integration host factor, alpha subunit [Escherichia coli B171]
gi|194416604|gb|EDX32739.1| integration host factor, alpha subunit [Shigella dysenteriae
1012]
gi|194422523|gb|EDX38521.1| integration host factor, alpha subunit [Escherichia coli 101-1]
gi|195182902|dbj|BAG66472.1| alpha subunit of integration host factor [Escherichia coli
O111:H-]
gi|208725075|gb|EDZ74782.1| integration host factor, alpha subunit [Escherichia coli O157:H7
str. EC4206]
gi|208730922|gb|EDZ79611.1| integration host factor, alpha subunit [Escherichia coli O157:H7
str. EC4045]
gi|208741087|gb|EDZ88769.1| integration host factor, alpha subunit [Escherichia coli O157:H7
str. EC4042]
gi|209160495|gb|ACI37928.1| integration host factor, alpha subunit [Escherichia coli O157:H7
str. EC4115]
gi|209768898|gb|ACI82761.1| integration host factor IHF alpha subunit [Escherichia coli]
gi|209768900|gb|ACI82762.1| integration host factor IHF alpha subunit [Escherichia coli]
gi|209768902|gb|ACI82763.1| integration host factor IHF alpha subunit [Escherichia coli]
gi|209768904|gb|ACI82764.1| integration host factor IHF alpha subunit [Escherichia coli]
gi|209768906|gb|ACI82765.1| integration host factor IHF alpha subunit [Escherichia coli]
gi|209912331|dbj|BAG77405.1| integration host factor alpha subunit [Escherichia coli SE11]
gi|215265003|emb|CAS09389.1| integration host factor (IHF), DNA-binding protein, alpha subunit
[Escherichia coli O127:H6 str. E2348/69]
gi|217318126|gb|EEC26553.1| integration host factor, alpha subunit [Escherichia coli O157:H7
str. TW14588]
gi|218352006|emb|CAU97738.1| integration host factor (IHF), DNA-binding protein, alpha subunit
[Escherichia coli 55989]
gi|218356257|emb|CAQ88874.1| integration host factor (IHF), DNA-binding protein, alpha subunit
[Escherichia fergusonii ATCC 35469]
gi|218361048|emb|CAQ98625.1| integration host factor (IHF), DNA-binding protein, alpha subunit
[Escherichia coli IAI1]
gi|218365351|emb|CAR03072.1| integration host factor (IHF), DNA-binding protein, alpha subunit
[Escherichia coli S88]
gi|218369706|emb|CAR17475.1| integration host factor (IHF), DNA-binding protein, alpha subunit
[Escherichia coli IAI39]
gi|218427221|emb|CAR08107.2| integration host factor (IHF), DNA-binding protein, alpha subunit
[Escherichia coli ED1a]
gi|218432309|emb|CAR13199.1| integration host factor (IHF), DNA-binding protein, alpha subunit
[Escherichia coli UMN026]
gi|222033468|emb|CAP76209.1| Integration host factor subunit alpha [Escherichia coli LF82]
gi|226900417|gb|EEH86676.1| integration host factor subunit alpha [Escherichia sp. 3_2_53FAA]
gi|227837439|gb|EEJ47905.1| integration host factor subunit alpha [Escherichia coli 83972]
gi|238861521|gb|ACR63519.1| integration host factor (IHF), DNA-binding protein, alpha subunit
[Escherichia coli BW2952]
gi|242377435|emb|CAQ32187.1| integration host factor (IHF), alpha subunit, subunit of IHF
transcriptional dual regulator [Escherichia coli
BL21(DE3)]
gi|253324377|gb|ACT28979.1| integration host factor, alpha subunit [Escherichia coli
'BL21-Gold(DE3)pLysS AG']
gi|253973673|gb|ACT39344.1| integration host factor subunit alpha [Escherichia coli B str.
REL606]
gi|253977867|gb|ACT43537.1| integration host factor subunit alpha [Escherichia coli
BL21(DE3)]
gi|254592729|gb|ACT72090.1| integration host factor (IHF), DNA-binding protein, alpha subunit
[Escherichia coli O157:H7 str. TW14359]
gi|257754227|dbj|BAI25729.1| integration host factor, alpha subunit [Escherichia coli O26:H11
str. 11368]
gi|257759211|dbj|BAI30708.1| integration host factor, alpha subunit [Escherichia coli O103:H2
str. 12009]
gi|257764595|dbj|BAI36090.1| integration host factor, alpha subunit [Escherichia coli O111:H-
str. 11128]
gi|260449165|gb|ACX39587.1| integration host factor, alpha subunit [Escherichia coli DH1]
gi|281178783|dbj|BAI55113.1| integration host factor alpha subunit [Escherichia coli SE15]
gi|281600923|gb|ADA73907.1| Integration host factor subunit alpha [Shigella flexneri 2002017]
gi|282948518|emb|CBG88107.1| Integration host factor alpha subunit [Citrobacter rodentium
ICC168]
gi|284921633|emb|CBG34705.1| Integration host factor alpha subunit [Escherichia coli 042]
gi|290762765|gb|ADD56726.1| Integration host factor subunit alpha [Escherichia coli O55:H7
str. CB9615]
gi|291322917|gb|EFE62345.1| integration host factor [Escherichia coli B088]
gi|291427419|gb|EFF00446.1| integration host factor subunit alpha [Escherichia coli FVEC1412]
gi|291432679|gb|EFF05658.1| integration host factor [Escherichia coli B185]
gi|291470496|gb|EFF12980.1| integration host factor [Escherichia coli B354]
gi|294490672|gb|ADE89428.1| integration host factor, alpha subunit [Escherichia coli IHE3034]
gi|298278296|gb|EFI19810.1| integration host factor subunit alpha [Escherichia coli FVEC1302]
gi|299880128|gb|EFI88339.1| integration host factor, alpha subunit [Escherichia coli MS
196-1]
gi|300297405|gb|EFJ53790.1| integration host factor, alpha subunit [Escherichia coli MS
185-1]
gi|300306101|gb|EFJ60621.1| integration host factor, alpha subunit [Escherichia coli MS
200-1]
gi|300314726|gb|EFJ64510.1| integration host factor, alpha subunit [Escherichia coli MS
175-1]
gi|300357852|gb|EFJ73722.1| integration host factor, alpha subunit [Escherichia coli MS
198-1]
gi|300395233|gb|EFJ78771.1| integration host factor, alpha subunit [Escherichia coli MS 69-1]
gi|300403481|gb|EFJ87019.1| integration host factor, alpha subunit [Escherichia coli MS 84-1]
gi|300406271|gb|EFJ89809.1| integration host factor, alpha subunit [Escherichia coli MS 45-1]
gi|300415127|gb|EFJ98437.1| integration host factor, alpha subunit [Escherichia coli MS
115-1]
gi|300419042|gb|EFK02353.1| integration host factor, alpha subunit [Escherichia coli MS
182-1]
gi|300449409|gb|EFK13029.1| integration host factor, alpha subunit [Escherichia coli MS
116-1]
gi|300456153|gb|EFK19646.1| integration host factor, alpha subunit [Escherichia coli MS 21-1]
gi|300461370|gb|EFK24863.1| integration host factor, alpha subunit [Escherichia coli MS
187-1]
gi|300525917|gb|EFK46986.1| integration host factor, alpha subunit [Escherichia coli MS
119-7]
gi|300528991|gb|EFK50053.1| integration host factor, alpha subunit [Escherichia coli MS
107-1]
gi|300838107|gb|EFK65867.1| integration host factor, alpha subunit [Escherichia coli MS
124-1]
gi|300845954|gb|EFK73714.1| integration host factor, alpha subunit [Escherichia coli MS 78-1]
gi|301073960|gb|EFK88766.1| integration host factor, alpha subunit [Escherichia coli MS
146-1]
gi|305851682|gb|EFM52135.1| integration host factor subunit alpha [Escherichia coli NC101]
gi|306908895|gb|EFN39391.1| integration host factor, alpha subunit [Escherichia coli W]
gi|307553734|gb|ADN46509.1| integration host factor [Escherichia coli ABU 83972]
gi|307626801|gb|ADN71105.1| integration host factor subunit alpha [Escherichia coli UM146]
gi|308123069|gb|EFO60331.1| integration host factor, alpha subunit [Escherichia coli MS
145-7]
gi|308923841|gb|EFP69344.1| integration host factor, alpha subunit [Shigella dysenteriae
1617]
gi|309701936|emb|CBJ01249.1| Integration host factor alpha subunit [Escherichia coli ETEC
H10407]
gi|312288379|gb|EFR16281.1| integration host factor, alpha subunit [Escherichia coli 2362-75]
gi|312946313|gb|ADR27140.1| integration host factor subunit alpha [Escherichia coli O83:H1
str. NRG 857C]
gi|313649266|gb|EFS13700.1| integration host factor, alpha subunit [Shigella flexneri 2a str.
2457T]
gi|315061017|gb|ADT75344.1| integration host factor (IHF), DNA-binding protein, alpha subunit
[Escherichia coli W]
gi|315136353|dbj|BAJ43512.1| integration host factor subunit alpha [Escherichia coli DH1]
gi|315257483|gb|EFU37451.1| integration host factor, alpha subunit [Escherichia coli MS 85-1]
gi|315286439|gb|EFU45874.1| integration host factor, alpha subunit [Escherichia coli MS
110-3]
gi|315290473|gb|EFU49847.1| integration host factor, alpha subunit [Escherichia coli MS
153-1]
gi|315299755|gb|EFU58995.1| integration host factor, alpha subunit [Escherichia coli MS 16-3]
gi|315618909|gb|EFU99492.1| integration host factor, alpha subunit [Escherichia coli 3431]
gi|320173204|gb|EFW48415.1| Integration host factor alpha subunit [Shigella dysenteriae CDC
74-1112]
gi|320181259|gb|EFW56178.1| Integration host factor alpha subunit [Shigella boydii ATCC 9905]
gi|320185864|gb|EFW60615.1| Integration host factor alpha subunit [Shigella flexneri CDC
796-83]
gi|320188400|gb|EFW63062.1| Integration host factor alpha subunit [Escherichia coli O157:H7
str. EC1212]
gi|320194576|gb|EFW69207.1| Integration host factor alpha subunit [Escherichia coli
WV_060327]
gi|320197896|gb|EFW72504.1| Integration host factor alpha subunit [Escherichia coli EC4100B]
gi|320641561|gb|EFX10949.1| integration host factor subunit alpha [Escherichia coli O157:H7
str. G5101]
gi|320646920|gb|EFX15753.1| integration host factor subunit alpha [Escherichia coli O157:H-
str. 493-89]
gi|320652202|gb|EFX20500.1| integration host factor subunit alpha [Escherichia coli O157:H-
str. H 2687]
gi|320657803|gb|EFX25565.1| integration host factor subunit alpha [Escherichia coli O55:H7
str. 3256-97 TW 07815]
gi|320658378|gb|EFX26072.1| integration host factor subunit alpha [Escherichia coli O55:H7
str. USDA 5905]
gi|320668275|gb|EFX35102.1| integration host factor subunit alpha [Escherichia coli O157:H7
str. LSU-61]
gi|323153050|gb|EFZ39319.1| integration host factor, alpha subunit [Escherichia coli EPECa14]
gi|323158490|gb|EFZ44506.1| integration host factor, alpha subunit [Escherichia coli E128010]
gi|323169347|gb|EFZ55023.1| integration host factor, alpha subunit [Shigella sonnei 53G]
gi|323175219|gb|EFZ60833.1| integration host factor, alpha subunit [Escherichia coli LT-68]
gi|323180491|gb|EFZ66036.1| integration host factor, alpha subunit [Escherichia coli 1180]
gi|323186271|gb|EFZ71623.1| integration host factor, alpha subunit [Escherichia coli 1357]
gi|323186894|gb|EFZ72212.1| integration host factor, alpha subunit [Escherichia coli RN587/1]
gi|323378411|gb|ADX50679.1| integration host factor, alpha subunit [Escherichia coli KO11]
gi|323937315|gb|EGB33594.1| integration host protein [Escherichia coli E1520]
gi|323940621|gb|EGB36812.1| integration host protein [Escherichia coli E482]
gi|323948097|gb|EGB44088.1| integration host protein [Escherichia coli H120]
gi|323952220|gb|EGB48093.1| integration host protein [Escherichia coli H252]
gi|323956614|gb|EGB52352.1| integration host protein [Escherichia coli H263]
gi|323962096|gb|EGB57692.1| integration host protein [Escherichia coli H489]
gi|323968482|gb|EGB63888.1| integration host protein [Escherichia coli M863]
gi|323973907|gb|EGB69079.1| integration host protein [Escherichia coli TA007]
gi|323978104|gb|EGB73190.1| integration host protein [Escherichia coli TW10509]
gi|324007099|gb|EGB76318.1| integration host factor, alpha subunit [Escherichia coli MS 57-2]
gi|324011508|gb|EGB80727.1| integration host factor, alpha subunit [Escherichia coli MS 60-1]
gi|324016465|gb|EGB85684.1| integration host factor, alpha subunit [Escherichia coli MS
117-3]
gi|324113464|gb|EGC07439.1| integration host protein [Escherichia fergusonii B253]
gi|324119198|gb|EGC13086.1| integration host protein [Escherichia coli E1167]
gi|325497126|gb|EGC94985.1| integration host factor subunit alpha [Escherichia fergusonii
ECD227]
gi|326342080|gb|EGD65861.1| Integration host factor alpha subunit [Escherichia coli O157:H7
str. 1044]
gi|326343632|gb|EGD67394.1| Integration host factor alpha subunit [Escherichia coli O157:H7
str. 1125]
gi|327252829|gb|EGE64483.1| integration host factor, alpha subunit [Escherichia coli STEC_7v]
gi|330911517|gb|EGH40027.1| integration host factor alpha subunit [Escherichia coli AA86]
gi|331039108|gb|EGI11328.1| integration host factor, alpha subunit [Escherichia coli H736]
gi|331043987|gb|EGI16123.1| integration host factor, alpha subunit [Escherichia coli M605]
gi|331049211|gb|EGI21283.1| integration host factor, alpha subunit [Escherichia coli M718]
gi|331055941|gb|EGI27950.1| integration host factor, alpha subunit [Escherichia coli TA206]
gi|331058991|gb|EGI30968.1| integration host factor, alpha subunit [Escherichia coli TA143]
gi|331063592|gb|EGI35503.1| integration host factor, alpha subunit [Escherichia coli TA271]
gi|331069463|gb|EGI40850.1| integration host factor, alpha subunit [Escherichia coli TA280]
gi|331074046|gb|EGI45366.1| integration host factor, alpha subunit [Escherichia coli H591]
gi|331079434|gb|EGI50631.1| integration host factor, alpha subunit [Escherichia coli H299]
gi|332090637|gb|EGI95732.1| integration host factor, alpha subunit [Shigella boydii 5216-82]
gi|332093969|gb|EGI99022.1| integration host factor, alpha subunit [Shigella dysenteriae
155-74]
gi|332096357|gb|EGJ01358.1| integration host factor, alpha subunit [Shigella boydii 3594-74]
gi|332101489|gb|EGJ04835.1| integration host factor subunit alpha [Shigella sp. D9]
gi|332343431|gb|AEE56765.1| integration host factor, alpha subunit IhfA [Escherichia coli
UMNK88]
gi|332758619|gb|EGJ88938.1| integration host factor, alpha subunit [Shigella flexneri
2747-71]
gi|332762548|gb|EGJ92813.1| integration host factor, alpha subunit [Shigella flexneri
4343-70]
gi|332767225|gb|EGJ97420.1| integration host factor, alpha subunit [Shigella flexneri
2930-71]
gi|333003776|gb|EGK23312.1| integration host factor, alpha subunit [Shigella flexneri VA-6]
gi|333004230|gb|EGK23761.1| integration host factor, alpha subunit [Shigella flexneri K-218]
gi|333006576|gb|EGK26076.1| integration host factor, alpha subunit [Shigella flexneri K-272]
gi|333018156|gb|EGK37458.1| integration host factor, alpha subunit [Shigella flexneri K-304]
gi|333018795|gb|EGK38088.1| integration host factor, alpha subunit [Shigella flexneri K-227]
Length = 99
Score = 90.2 bits (223), Expect = 8e-17, Method: Composition-based stats.
Identities = 28/96 (29%), Positives = 51/96 (53%), Gaps = 1/96 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ + + K L+ +D +++V + EE+ +AL NG +V++ GFG+F +R + R
Sbjct: 4 TKAEMSEYLFDKL-GLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 62
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDSTL 97
R P + I + + V FR G+ LK R+ +
Sbjct: 63 RNPKTGEDIPITARRVVTFRPGQKLKSRVENASPKD 98
>gi|156934283|ref|YP_001438199.1| integration host factor subunit alpha [Cronobacter sakazakii ATCC
BAA-894]
gi|166918505|sp|A7MNY7|IHFA_ENTS8 RecName: Full=Integration host factor subunit alpha;
Short=IHF-alpha
gi|156532537|gb|ABU77363.1| hypothetical protein ESA_02114 [Cronobacter sakazakii ATCC
BAA-894]
Length = 99
Score = 90.2 bits (223), Expect = 8e-17, Method: Composition-based stats.
Identities = 28/97 (28%), Positives = 52/97 (53%), Gaps = 1/97 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ + + K L+ +D +++V + EE+ +AL NG +V++ GFG+F +R + R
Sbjct: 4 TKAEMSEYLFDKL-GLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 62
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDSTLS 98
R P + I + + V FR G+ LK R+ + +
Sbjct: 63 RNPKTGEDIPITARRVVTFRPGQKLKSRVENASPKEN 99
>gi|319943681|ref|ZP_08017962.1| integration host factor subunit alpha [Lautropia mirabilis ATCC
51599]
gi|319742914|gb|EFV95320.1| integration host factor subunit alpha [Lautropia mirabilis ATCC
51599]
Length = 141
Score = 90.2 bits (223), Expect = 8e-17, Method: Composition-based stats.
Identities = 26/92 (28%), Positives = 49/92 (53%), Gaps = 1/92 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K++L + ++ LN ++ + +V EE++ AL G V++ GFG+F +R + R
Sbjct: 31 TKAALADMLFER-VGLNKREAKDMVETFFEEISAALIRGESVKLSGFGNFQLRDKQQRPG 89
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLNSP 93
R P + I + + V F A + LK ++ +P
Sbjct: 90 RNPKTGEEIPISARRVVTFHASQKLKAQIEAP 121
>gi|251773380|gb|EES53929.1| histone family protein DNA-binding protein [Leptospirillum
ferrodiazotrophum]
Length = 99
Score = 90.2 bits (223), Expect = 8e-17, Method: Composition-based stats.
Identities = 27/94 (28%), Positives = 44/94 (46%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS L +A++ P + +++ L+ M + LANG VEIR FG V ++A R
Sbjct: 1 MTKSDLAARLAREFPGITCPLARTLIDYFLDAMKEGLANGDTVEIRDFGVLRVHEKAPRK 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSPD 94
R P + + + F+ G+ LK +
Sbjct: 61 GRNPKTGASVLIPARKTVRFKRGRALKNAQKRKE 94
>gi|157161173|ref|YP_001458491.1| integration host factor subunit alpha [Escherichia coli HS]
gi|166918503|sp|A8A0Q4|IHFA_ECOHS RecName: Full=Integration host factor subunit alpha;
Short=IHF-alpha
gi|157066853|gb|ABV06108.1| integration host factor, alpha subunit [Escherichia coli HS]
Length = 99
Score = 90.2 bits (223), Expect = 8e-17, Method: Composition-based stats.
Identities = 28/96 (29%), Positives = 51/96 (53%), Gaps = 1/96 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ + + K L+ +D +++V + EE+ +AL NG +V++ GFG+F +R + R
Sbjct: 4 TKAEMSEYLFDKL-GLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 62
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDSTL 97
R P + I + + V FR G+ LK R+ +
Sbjct: 63 RNPKTGEDIPITARRVVTFRPGQKLKSRVENASPKD 98
>gi|291544066|emb|CBL17175.1| Bacterial nucleoid DNA-binding protein [Ruminococcus sp. 18P13]
Length = 91
Score = 90.2 bits (223), Expect = 8e-17, Method: Composition-based stats.
Identities = 30/92 (32%), Positives = 53/92 (57%), Gaps = 1/92 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ L+ +++K +D E +N +++ +T A+A G +V+I GFG+F VR+R +
Sbjct: 1 MTKADLVKAVSEK-ANCPKKDAEMAINTVIDCITDAVAQGEKVQIVGFGTFEVRERGEKK 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
+ P + + K P F+AGK LK+ +N
Sbjct: 60 CKNPRTGEEMITPAKKAPVFKAGKALKDAVNK 91
>gi|220934628|ref|YP_002513527.1| integration host factor, alpha subunit [Thioalkalivibrio sp.
HL-EbGR7]
gi|254803522|sp|B8GRI6|IHFA_THISH RecName: Full=Integration host factor subunit alpha;
Short=IHF-alpha
gi|219995938|gb|ACL72540.1| integration host factor, alpha subunit [Thioalkalivibrio sp.
HL-EbGR7]
Length = 99
Score = 90.2 bits (223), Expect = 8e-17, Method: Composition-based stats.
Identities = 27/89 (30%), Positives = 50/89 (56%), Gaps = 1/89 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ + + ++ LN ++ +++V M EE+ AL G +V++ GFG+F++R + R
Sbjct: 4 TKADMSERLFEEL-GLNKREAKELVEMFFEEVRMALERGEQVKLSGFGNFTLRDKNQRPG 62
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P + I + + V FR G+ LK R+
Sbjct: 63 RNPKTGEEIPISARRVVTFRPGQKLKARV 91
>gi|312865869|ref|ZP_07726090.1| DNA-binding protein HU-alpha [Streptococcus downei F0415]
gi|311098273|gb|EFQ56496.1| DNA-binding protein HU-alpha [Streptococcus downei F0415]
Length = 91
Score = 90.2 bits (223), Expect = 8e-17, Method: Composition-based stats.
Identities = 31/90 (34%), Positives = 48/90 (53%), Gaps = 1/90 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K LI +A+ +L +D V+ + + L+ G +V++ GFG+F VR+RAAR
Sbjct: 3 NKQDLIAKVAEAT-ELTKKDSAAAVDAVFSSIEGFLSKGEKVQLIGFGNFEVRERAARKG 61
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P I + VP F+AGK LK+ +
Sbjct: 62 RNPQTGAEIKIAASKVPAFKAGKALKDAVK 91
>gi|294789887|ref|ZP_06755113.1| DNA-binding protein HU-beta [Simonsiella muelleri ATCC 29453]
gi|294482177|gb|EFG29878.1| DNA-binding protein HU-beta [Simonsiella muelleri ATCC 29453]
Length = 90
Score = 90.2 bits (223), Expect = 8e-17, Method: Composition-based stats.
Identities = 33/90 (36%), Positives = 47/90 (52%), Gaps = 1/90 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI TIA ++ L +N L + + L+ GG V I GFG F V +RA R+
Sbjct: 1 MNKAELIKTIATES-GLTQTQANDALNALCKVVIDELSIGGEVNIVGFGRFYVAERAERM 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P K + + V F+AGK LK+ +
Sbjct: 60 GRNPKTSKPVMIPATCVAKFKAGKTLKDAV 89
>gi|28898068|ref|NP_797673.1| integration host factor subunit alpha [Vibrio parahaemolyticus
RIMD 2210633]
gi|153839847|ref|ZP_01992514.1| integration host factor, alpha subunit [Vibrio parahaemolyticus
AQ3810]
gi|260366369|ref|ZP_05778808.1| integration host factor, alpha subunit [Vibrio parahaemolyticus
K5030]
gi|260878417|ref|ZP_05890772.1| integration host factor, alpha subunit [Vibrio parahaemolyticus
AN-5034]
gi|260896996|ref|ZP_05905492.1| integration host factor, alpha subunit [Vibrio parahaemolyticus
Peru-466]
gi|260901794|ref|ZP_05910189.1| integration host factor, alpha subunit [Vibrio parahaemolyticus
AQ4037]
gi|33301264|sp|Q87Q56|IHFA_VIBPA RecName: Full=Integration host factor subunit alpha;
Short=IHF-alpha
gi|28806282|dbj|BAC59557.1| integration host factor, alpha subunit [Vibrio parahaemolyticus
RIMD 2210633]
gi|149746630|gb|EDM57618.1| integration host factor, alpha subunit [Vibrio parahaemolyticus
AQ3810]
gi|308087674|gb|EFO37369.1| integration host factor, alpha subunit [Vibrio parahaemolyticus
Peru-466]
gi|308091287|gb|EFO40982.1| integration host factor, alpha subunit [Vibrio parahaemolyticus
AN-5034]
gi|308108021|gb|EFO45561.1| integration host factor, alpha subunit [Vibrio parahaemolyticus
AQ4037]
gi|308113197|gb|EFO50737.1| integration host factor, alpha subunit [Vibrio parahaemolyticus
K5030]
gi|328472975|gb|EGF43823.1| integration host factor subunit alpha [Vibrio parahaemolyticus
10329]
Length = 98
Score = 90.2 bits (223), Expect = 8e-17, Method: Composition-based stats.
Identities = 27/95 (28%), Positives = 49/95 (51%), Gaps = 1/95 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ L + K + +D ++ V + EE+ +AL +G +V++ GFG+F +R + R
Sbjct: 4 TKAELAENLFDKL-GFSKRDAKETVEVFFEEIRKALESGEQVKLSGFGNFDLRDKNERPG 62
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDST 96
R P + I + + V FR G+ LK R+ +
Sbjct: 63 RNPKTGEDIPITARRVVTFRPGQKLKARVENLKKE 97
>gi|242239477|ref|YP_002987658.1| integration host factor subunit alpha [Dickeya dadantii Ech703]
gi|242131534|gb|ACS85836.1| integration host factor, alpha subunit [Dickeya dadantii Ech703]
Length = 99
Score = 90.2 bits (223), Expect = 9e-17, Method: Composition-based stats.
Identities = 29/97 (29%), Positives = 53/97 (54%), Gaps = 1/97 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ + + +K L+ +D +++V + EE+ +AL NG +V++ GFG+F +R + R
Sbjct: 4 TKAEMSEYLFEKL-GLSKRDAKELVELFFEEVRRALENGEQVKLSGFGNFDLRDKNQRPG 62
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDSTLS 98
R P + I + + V FR G+ LK R+ + S
Sbjct: 63 RNPKTGEDIPITARRVVTFRPGQKLKSRVENASPKAS 99
>gi|222153394|ref|YP_002562571.1| DNA-binding protein HU [Streptococcus uberis 0140J]
gi|222114207|emb|CAR42760.1| DNA-binding protein HU [Streptococcus uberis 0140J]
Length = 91
Score = 90.2 bits (223), Expect = 9e-17, Method: Composition-based stats.
Identities = 31/90 (34%), Positives = 48/90 (53%), Gaps = 1/90 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K LI +A+ +L +D V+ + + L+ G +V++ GFG+F VR+RAAR
Sbjct: 3 NKQDLIAKVAEAT-ELTKKDSAAAVDAVFSAIEGFLSKGEKVQLIGFGNFEVRERAARKG 61
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P I + VP F+AGK LK+ +
Sbjct: 62 RNPQTGAEIKIAASKVPAFKAGKALKDAVK 91
>gi|254456031|ref|ZP_05069460.1| integration host factor beta-subunit [Candidatus Pelagibacter sp.
HTCC7211]
gi|207083033|gb|EDZ60459.1| integration host factor beta-subunit [Candidatus Pelagibacter sp.
HTCC7211]
Length = 97
Score = 90.2 bits (223), Expect = 9e-17, Method: Composition-based stats.
Identities = 32/95 (33%), Positives = 55/95 (57%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
++KS L+ ++ P +D+EK N++L E+ AL G RVE+RGFG FS + AR+
Sbjct: 3 IVKSKLLKQLSDNYPNFLKKDLEKFTNIILGEIKNALKRGDRVELRGFGVFSTNIQKARI 62
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDS 95
+R P + ++ +K F+ K+L ++LN +
Sbjct: 63 SRNPKTGEKVNTPQKKTIHFKMSKDLFKKLNDEEQ 97
>gi|149372186|ref|ZP_01891456.1| DNA-binding protein HU-beta (NS1) (HU-1) [unidentified
eubacterium SCB49]
gi|149354953|gb|EDM43515.1| DNA-binding protein HU-beta (NS1) (HU-1) [unidentified
eubacterium SCB49]
Length = 90
Score = 90.2 bits (223), Expect = 9e-17, Method: Composition-based stats.
Identities = 34/91 (37%), Positives = 49/91 (53%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI +A+ + + +K + L + +L G RV + GFGS+SV KRAAR
Sbjct: 1 MNKSDLIDAMAE-DAGVTKAAAKKALESFLGNVEGSLKKGNRVSLVGFGSWSVTKRAARE 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P K I + K V F+AG +L+ +N
Sbjct: 60 GRNPQTGKTIKIAAKNVVKFKAGSDLQSSVN 90
>gi|87303118|ref|ZP_01085916.1| DNA binding protein HU [Synechococcus sp. WH 5701]
gi|87282285|gb|EAQ74245.1| DNA binding protein HU [Synechococcus sp. WH 5701]
Length = 91
Score = 90.2 bits (223), Expect = 9e-17, Method: Composition-based stats.
Identities = 31/90 (34%), Positives = 51/90 (56%), Gaps = 1/90 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ L+ +A + +L +V K+V+ +E + ++ G +V I GFGSF R+R+AR
Sbjct: 1 MNKADLVNLVAVRT-ELTKTEVSKVVDAAIETIVDSVVEGKKVSILGFGSFEARERSARQ 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
P + I + K VP F AGK K+++
Sbjct: 60 GLNPKTGEKIKIPAKRVPAFTAGKQFKDKV 89
>gi|332998852|gb|EGK18447.1| DNA-binding protein HU-alpha [Shigella flexneri K-272]
gi|333014312|gb|EGK33666.1| DNA-binding protein HU-alpha [Shigella flexneri K-227]
Length = 90
Score = 90.2 bits (223), Expect = 9e-17, Method: Composition-based stats.
Identities = 32/91 (35%), Positives = 48/91 (52%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI IA+K +L+ + + L +T++L G V++ GFG+F V RA R
Sbjct: 1 MNKTQLIDVIAEK-AELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERA 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P K I + VP F +GK LK+ +
Sbjct: 60 GRNPQTGKEIKIAAANVPAFVSGKALKDAVK 90
>gi|307244028|ref|ZP_07526147.1| DNA-binding protein HU [Peptostreptococcus stomatis DSM 17678]
gi|306492552|gb|EFM64586.1| DNA-binding protein HU [Peptostreptococcus stomatis DSM 17678]
Length = 93
Score = 90.2 bits (223), Expect = 9e-17, Method: Composition-based stats.
Identities = 31/94 (32%), Positives = 54/94 (57%), Gaps = 2/94 (2%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ L+ +++K+ L ++ E +N ++ + + L G +V++ GFG+F R+RAAR
Sbjct: 1 MNKAELVAKMSEKS-NLTKKESELALNAFMKVVEETLVAGDKVQLVGFGTFETRERAARS 59
Query: 61 ARAPLAQKV-ISVEEKMVPFFRAGKNLKERLNSP 93
R P + I + P F+AGK LKE +N+
Sbjct: 60 GRNPRKPEEVIEIPASKAPVFKAGKGLKELVNNK 93
>gi|282855424|ref|ZP_06264745.1| DNA-binding protein HU [Pyramidobacter piscolens W5455]
gi|282586720|gb|EFB91967.1| DNA-binding protein HU [Pyramidobacter piscolens W5455]
Length = 91
Score = 90.2 bits (223), Expect = 9e-17, Method: Composition-based stats.
Identities = 39/92 (42%), Positives = 57/92 (61%), Gaps = 2/92 (2%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI +A N ++ + + ++ + +ALA G RV++ GFG+F VRKRAAR+
Sbjct: 1 MTKNDLINEVAA-NAGMSKKAAGEAISATFAAIEKALAKGDRVQLVGFGTFEVRKRAARV 59
Query: 61 ARAPL-AQKVISVEEKMVPFFRAGKNLKERLN 91
R P +K I + K VP FRAGK LKE++N
Sbjct: 60 GRNPQDPKKTIQIPAKKVPVFRAGKGLKEQVN 91
>gi|213968551|ref|ZP_03396694.1| DNA-binding protein HU family [Pseudomonas syringae pv. tomato
T1]
gi|301383523|ref|ZP_07231941.1| DNA-binding protein HU family [Pseudomonas syringae pv. tomato
Max13]
gi|302062573|ref|ZP_07254114.1| DNA-binding protein HU family [Pseudomonas syringae pv. tomato
K40]
gi|302130240|ref|ZP_07256230.1| DNA-binding protein HU family [Pseudomonas syringae pv. tomato
NCPPB 1108]
gi|213926839|gb|EEB60391.1| DNA-binding protein HU family [Pseudomonas syringae pv. tomato
T1]
gi|330967966|gb|EGH68226.1| DNA-binding protein HU family [Pseudomonas syringae pv.
actinidiae str. M302091]
gi|331017834|gb|EGH97890.1| DNA-binding protein HU family [Pseudomonas syringae pv.
lachrymans str. M302278PT]
Length = 91
Score = 90.2 bits (223), Expect = 9e-17, Method: Composition-based stats.
Identities = 29/91 (31%), Positives = 47/91 (51%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K + IA+K L + +++N +LEE+T AL V + GFG+F R R AR
Sbjct: 1 MRKPDVAAAIAEK-ADLTKEQSNRVLNAILEEITGALHRKDSVTLVGFGTFLQRHRGART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
+ P + + ++ F+ GK LK+ +N
Sbjct: 60 GKNPQTGEPVKIKASNTVAFKPGKALKDSVN 90
>gi|332993560|gb|AEF03615.1| integration host factor subunit alpha [Alteromonas sp. SN2]
Length = 99
Score = 90.2 bits (223), Expect = 9e-17, Method: Composition-based stats.
Identities = 27/91 (29%), Positives = 50/91 (54%), Gaps = 1/91 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ + + +K +N +D + +V + EE+ AL G +V++ GFG+F +R + R
Sbjct: 4 TKAEMAEHLFEKL-GINKRDAKDLVELFFEEIKGALEAGEQVKLSGFGNFDLRDKNERPG 62
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P + I ++ + V FR G+ LK R+ +
Sbjct: 63 RNPKTGEDIPIKARRVVTFRPGQKLKSRVEN 93
>gi|53805111|ref|YP_113209.1| integration host factor subunit alpha [Methylococcus capsulatus
str. Bath]
gi|81682701|sp|Q60AY8|IHFA_METCA RecName: Full=Integration host factor subunit alpha;
Short=IHF-alpha
gi|53758872|gb|AAU93163.1| integration host factor, alpha subunit [Methylococcus capsulatus
str. Bath]
Length = 110
Score = 90.2 bits (223), Expect = 9e-17, Method: Composition-based stats.
Identities = 24/89 (26%), Positives = 48/89 (53%), Gaps = 1/89 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ ++ + + LN +D +++V+ E + +L +G V++ GFG+F +R + R
Sbjct: 4 TKADMVERLFSEL-GLNKRDAKELVDQFFEVIKASLESGRSVKLSGFGNFDLRDKRQRPG 62
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P + I + + V F+AG+ LK +
Sbjct: 63 RNPKTGEEIPITARRVVTFKAGQKLKATV 91
>gi|24379067|ref|NP_721022.1| putative DNA-binding protein [Streptococcus mutans UA159]
gi|290580914|ref|YP_003485306.1| putative DNA-binding protein [Streptococcus mutans NN2025]
gi|14194638|sp|Q9XB21|DBH_STRMU RecName: Full=DNA-binding protein HU
gi|5209332|gb|AAD40810.1|L40355_1 histone-like DNA-binding protein [Streptococcus mutans]
gi|24376965|gb|AAN58328.1|AE014903_4 putative DNA-binding protein [Streptococcus mutans UA159]
gi|254997813|dbj|BAH88414.1| putative DNA-binding protein [Streptococcus mutans NN2025]
Length = 91
Score = 90.2 bits (223), Expect = 9e-17, Method: Composition-based stats.
Identities = 32/90 (35%), Positives = 51/90 (56%), Gaps = 1/90 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K LI +A+ +L +D V+ + ++ LA G +V++ GFG+F VR+RAAR
Sbjct: 3 NKQDLIAKVAEAT-ELTKKDSAAAVDAVFSAVSSYLAKGEKVQLIGFGNFEVRERAARKG 61
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + I ++ VP F+AGK LK+ +
Sbjct: 62 RNPQTGEEIKIKASKVPAFKAGKALKDAVK 91
>gi|119356262|ref|YP_910906.1| histone family protein DNA-binding protein [Chlorobium
phaeobacteroides DSM 266]
gi|119353611|gb|ABL64482.1| histone family protein DNA-binding protein [Chlorobium
phaeobacteroides DSM 266]
Length = 102
Score = 90.2 bits (223), Expect = 9e-17, Method: Composition-based stats.
Identities = 32/89 (35%), Positives = 51/89 (57%), Gaps = 1/89 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ L+ IA + L + E +V+ L E + +L +G R+EIRGFGSF++R + R A
Sbjct: 6 TKADLVNVIAHRT-GLTKNETEAVVDCLFESIIDSLKSGKRIEIRGFGSFNIRHKNLRQA 64
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P + ++V+ K VP F+ K K +
Sbjct: 65 RNPRTGEKVTVDPKNVPTFKISKEFKHAV 93
>gi|15896458|ref|NP_349807.1| DNA binding protein HU [Clostridium acetobutylicum ATCC 824]
gi|15026283|gb|AAK81147.1|AE007817_1 DNA binding protein HU [Clostridium acetobutylicum ATCC 824]
gi|325510616|gb|ADZ22252.1| DNA binding protein HU [Clostridium acetobutylicum EA 2018]
Length = 91
Score = 90.2 bits (223), Expect = 9e-17, Method: Composition-based stats.
Identities = 34/92 (36%), Positives = 55/92 (59%), Gaps = 1/92 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI +I++K+ KL +D E + +E + + L +V++ GFG+F R+RA R
Sbjct: 1 MNKAELITSISEKS-KLTKKDAEVALKAFIESVEETLEKHEKVQLVGFGTFETRERAERK 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P +++ I + VP F+AGK KER+N
Sbjct: 60 GRNPRSKEEIVIPASTVPVFKAGKEFKERVNK 91
>gi|294102069|ref|YP_003553927.1| histone family protein DNA-binding protein [Aminobacterium
colombiense DSM 12261]
gi|293617049|gb|ADE57203.1| histone family protein DNA-binding protein [Aminobacterium
colombiense DSM 12261]
Length = 91
Score = 90.2 bits (223), Expect = 9e-17, Method: Composition-based stats.
Identities = 38/91 (41%), Positives = 56/91 (61%), Gaps = 2/91 (2%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ L+ +AK LN ++ V +L+ + +LA G +V++ GFG+F VR+RAAR
Sbjct: 1 MTKTDLVNAVAKAT-GLNKREAGAAVGAVLQAIENSLAKGDKVQLVGFGTFEVRERAARE 59
Query: 61 ARAPL-AQKVISVEEKMVPFFRAGKNLKERL 90
R P +KVI + K VP FR GK LKE++
Sbjct: 60 GRNPQDPKKVIKIPAKKVPVFRPGKALKEKV 90
>gi|260768664|ref|ZP_05877598.1| integration host factor alpha subunit [Vibrio furnissii CIP
102972]
gi|260616694|gb|EEX41879.1| integration host factor alpha subunit [Vibrio furnissii CIP
102972]
gi|315180366|gb|ADT87280.1| integration host factor subunit alpha [Vibrio furnissii NCTC
11218]
Length = 97
Score = 90.2 bits (223), Expect = 9e-17, Method: Composition-based stats.
Identities = 27/95 (28%), Positives = 50/95 (52%), Gaps = 1/95 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ L + +K + +D ++ V + EE+ +AL G +V++ GFG+F +R + R
Sbjct: 4 TKADLAENLFEKL-GFSKRDAKETVEVFFEEIRKALEGGEQVKLSGFGNFDLRDKNERPG 62
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDST 96
R P + I + + V FR G+ LK R+ + +
Sbjct: 63 RNPKTGEDIPITARRVVTFRPGQKLKARVENIKKS 97
>gi|255066467|ref|ZP_05318322.1| integration host factor, alpha subunit [Neisseria sicca ATCC
29256]
gi|261365588|ref|ZP_05978471.1| integration host factor, alpha subunit [Neisseria mucosa ATCC
25996]
gi|261377866|ref|ZP_05982439.1| integration host factor, alpha subunit [Neisseria cinerea ATCC
14685]
gi|261400410|ref|ZP_05986535.1| integration host factor, alpha subunit [Neisseria lactamica ATCC
23970]
gi|296314669|ref|ZP_06864610.1| integration host factor, alpha subunit [Neisseria polysaccharea
ATCC 43768]
gi|298369375|ref|ZP_06980693.1| integration host factor, alpha subunit [Neisseria sp. oral taxon
014 str. F0314]
gi|313668794|ref|YP_004049078.1| integration host factor alpha-subunit [Neisseria lactamica
ST-640]
gi|255049347|gb|EET44811.1| integration host factor, alpha subunit [Neisseria sicca ATCC
29256]
gi|269145715|gb|EEZ72133.1| integration host factor, alpha subunit [Neisseria cinerea ATCC
14685]
gi|269209855|gb|EEZ76310.1| integration host factor, alpha subunit [Neisseria lactamica ATCC
23970]
gi|288565913|gb|EFC87473.1| integration host factor, alpha subunit [Neisseria mucosa ATCC
25996]
gi|296838496|gb|EFH22434.1| integration host factor, alpha subunit [Neisseria polysaccharea
ATCC 43768]
gi|298283378|gb|EFI24865.1| integration host factor, alpha subunit [Neisseria sp. oral taxon
014 str. F0314]
gi|309378771|emb|CBX22597.1| unnamed protein product [Neisseria lactamica Y92-1009]
gi|313006256|emb|CBN87718.1| putative integration host factor alpha-subunit [Neisseria
lactamica 020-06]
Length = 100
Score = 90.2 bits (223), Expect = 9e-17, Method: Composition-based stats.
Identities = 25/89 (28%), Positives = 43/89 (48%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ L + K + D ++IV + EE+ LA G ++I GFG+F +R + R
Sbjct: 4 TKAELADILVDKVSNVTKNDAKEIVELFFEEIRSTLARGEEIKISGFGNFQLRDKPQRPG 63
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P + + + + V F A + LK +
Sbjct: 64 RNPKTGEEVPITARRVVTFHASQKLKGMV 92
>gi|167627762|ref|YP_001678262.1| DNA-binding protein HU-beta [Francisella philomiragia subsp.
philomiragia ATCC 25017]
gi|241668326|ref|ZP_04755904.1| DNA-binding protein HU-beta [Francisella philomiragia subsp.
philomiragia ATCC 25015]
gi|254876859|ref|ZP_05249569.1| DNA-binding protein HU-beta [Francisella philomiragia subsp.
philomiragia ATCC 25015]
gi|167597763|gb|ABZ87761.1| DNA-binding protein HU-beta [Francisella philomiragia subsp.
philomiragia ATCC 25017]
gi|254842880|gb|EET21294.1| DNA-binding protein HU-beta [Francisella philomiragia subsp.
philomiragia ATCC 25015]
Length = 90
Score = 90.2 bits (223), Expect = 9e-17, Method: Composition-based stats.
Identities = 32/91 (35%), Positives = 51/91 (56%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS L+ IAK+ + + ++ + +T+AL NG V + GFG+F V++R+AR
Sbjct: 1 MNKSELVSAIAKE-ADVTKEVASNTLDATIAAVTKALKNGDSVTLVGFGTFQVKERSARE 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + I + VP F+AGK LK+ +
Sbjct: 60 GRNPKTGETIKIAASKVPSFKAGKGLKDAVK 90
>gi|304415426|ref|ZP_07396077.1| HU DNA-binding transcriptional regulator alpha subunit
[Candidatus Regiella insecticola LSR1]
gi|304282725|gb|EFL91237.1| HU DNA-binding transcriptional regulator alpha subunit
[Candidatus Regiella insecticola LSR1]
Length = 141
Score = 90.2 bits (223), Expect = 9e-17, Method: Composition-based stats.
Identities = 32/92 (34%), Positives = 48/92 (52%), Gaps = 1/92 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI +A+K + D V+ +L+ +T+AL G +++I GFG+F KR AR
Sbjct: 1 MNKTQLIDKVAEKI-GSSKTDARAAVDAILDSITEALEEGEQMQIVGFGTFKTSKRQARK 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P I + V F GK LK+ + S
Sbjct: 60 GRNPQTGAEIQIPATTVATFTVGKELKDAVKS 91
>gi|328885294|emb|CCA58533.1| Integration host factor beta subunit [Streptomyces venezuelae
ATCC 10712]
Length = 234
Score = 90.2 bits (223), Expect = 9e-17, Method: Composition-based stats.
Identities = 32/95 (33%), Positives = 50/95 (52%), Gaps = 2/95 (2%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ L+ IA K Q + V+ +L+ + +A+ G RV + GFGSF R AR
Sbjct: 1 MNKAQLVEAIADKMGG--RQQAAEAVDHVLDAIVRAVVGGDRVSVTGFGSFEKVDRPARY 58
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDS 95
AR P + + V++ VP FRAG+ K+ ++
Sbjct: 59 ARNPQTGERVRVKKTSVPRFRAGQGFKDLVSGSKK 93
>gi|310780405|ref|YP_003968737.1| histone family protein DNA-binding protein [Ilyobacter polytropus
DSM 2926]
gi|309749728|gb|ADO84389.1| histone family protein DNA-binding protein [Ilyobacter polytropus
DSM 2926]
Length = 91
Score = 90.2 bits (223), Expect = 9e-17, Method: Composition-based stats.
Identities = 30/91 (32%), Positives = 46/91 (50%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K + +K + D E+ ++ L + L +G V G+G F V +RAARL
Sbjct: 1 MTKKEFVKLFFEKGEFESKADAERKLDAFLTTVEDVLNDGDDVNFIGWGKFEVAERAARL 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + I +E K V F+AGK L +++N
Sbjct: 61 GRNPKTGEEIKIEAKKVVKFKAGKKLNDKVN 91
>gi|289628106|ref|ZP_06461060.1| HU family DNA-binding protein [Pseudomonas syringae pv. aesculi
str. NCPPB3681]
gi|289651294|ref|ZP_06482637.1| HU family DNA-binding protein [Pseudomonas syringae pv. aesculi
str. 2250]
gi|330870971|gb|EGH05680.1| HU family DNA-binding protein [Pseudomonas syringae pv. aesculi
str. 0893_23]
Length = 92
Score = 90.2 bits (223), Expect = 9e-17, Method: Composition-based stats.
Identities = 29/92 (31%), Positives = 48/92 (52%), Gaps = 1/92 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K + IA+K L + +++N +LEE+T AL V + GFG+F R R AR
Sbjct: 1 MRKPEVAAAIAEK-ADLTKEQSNRVLNAILEEITGALHRKDSVTLVGFGTFLQRHRGART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
+ P + + ++ F+ GK LK+ +N+
Sbjct: 60 GKNPQTGEPVKIKASNTVAFKPGKALKDSVNN 91
>gi|88810671|ref|ZP_01125928.1| Integration host factor, alpha subunit [Nitrococcus mobilis Nb-231]
gi|88792301|gb|EAR23411.1| Integration host factor, alpha subunit [Nitrococcus mobilis Nb-231]
Length = 100
Score = 90.2 bits (223), Expect = 1e-16, Method: Composition-based stats.
Identities = 26/98 (26%), Positives = 48/98 (48%), Gaps = 1/98 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ + + + LN ++ +++V EE+ AL G V++ GFG+F +R + R
Sbjct: 4 TKAEMAERLFDEL-GLNKREAKELVESFFEEIRCALEQGTPVKLSGFGNFDLRDKNERPG 62
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDSTLSN 99
R P + I + + V FR G+ LK R+ + +
Sbjct: 63 RNPKTGEEIPICARRVVTFRPGQKLKARVETYAGNVKQ 100
>gi|282896625|ref|ZP_06304640.1| Histone-like protein DNA-binding protein [Raphidiopsis brookii
D9]
gi|281198495|gb|EFA73381.1| Histone-like protein DNA-binding protein [Raphidiopsis brookii
D9]
Length = 94
Score = 89.8 bits (222), Expect = 1e-16, Method: Composition-based stats.
Identities = 26/90 (28%), Positives = 51/90 (56%), Gaps = 1/90 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ L+ +++K + + + +++ ++ + +A+A+G +V + GFGSF R R AR
Sbjct: 1 MNKAELVDAVSEK-ASVTKKQADAVISAAIDTIIEAVASGDKVTLVGFGSFESRDRKARE 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P + + + VP F AGK +E++
Sbjct: 60 GRNPKTNEKMEIPATKVPAFSAGKLFREKV 89
>gi|251789564|ref|YP_003004285.1| integration host factor subunit alpha [Dickeya zeae Ech1591]
gi|271500486|ref|YP_003333511.1| integration host factor subunit alpha [Dickeya dadantii Ech586]
gi|307131171|ref|YP_003883187.1| integration host factor (IHF), DNA-binding protein, subunit alpha
[Dickeya dadantii 3937]
gi|585306|sp|P37982|IHFA_DICD3 RecName: Full=Integration host factor subunit alpha;
Short=IHF-alpha
gi|399668|emb|CAA52768.1| integration host factor alpha subunit [Erwinia chrysanthemi]
gi|247538185|gb|ACT06806.1| integration host factor, alpha subunit [Dickeya zeae Ech1591]
gi|270344041|gb|ACZ76806.1| integration host factor, alpha subunit [Dickeya dadantii Ech586]
gi|306528700|gb|ADM98630.1| integration host factor (IHF), DNA-binding protein, alpha subunit
[Dickeya dadantii 3937]
gi|1093152|prf||2103145A integration host factor
Length = 99
Score = 89.8 bits (222), Expect = 1e-16, Method: Composition-based stats.
Identities = 29/97 (29%), Positives = 53/97 (54%), Gaps = 1/97 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ + + +K L+ +D +++V + EE+ +AL NG +V++ GFG+F +R + R
Sbjct: 4 TKAEMSEYLFEKL-GLSKRDAKELVELFFEEVRRALENGEQVKLSGFGNFDLRDKNQRPG 62
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDSTLS 98
R P + I + + V FR G+ LK R+ + S
Sbjct: 63 RNPKTGEDIPITARRVVTFRPGQKLKSRVENASPKES 99
>gi|300114468|ref|YP_003761043.1| integration host factor subunit alpha [Nitrosococcus watsonii
C-113]
gi|299540405|gb|ADJ28722.1| integration host factor, alpha subunit [Nitrosococcus watsonii
C-113]
Length = 99
Score = 89.8 bits (222), Expect = 1e-16, Method: Composition-based stats.
Identities = 27/89 (30%), Positives = 48/89 (53%), Gaps = 1/89 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ + + ++ LN ++ ++IV M E++ AL G V++ GFG+F +R + R
Sbjct: 4 TKADMTEILYQEL-GLNKREAKEIVEMFFEDIRCALEQGEAVKLSGFGNFELRDKGERPG 62
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P + I + + V FR G+ LK R+
Sbjct: 63 RNPKTGEEIPITARRVVTFRPGQKLKARV 91
>gi|284052866|ref|ZP_06383076.1| histone family protein DNA-binding protein [Arthrospira platensis
str. Paraca]
gi|291569732|dbj|BAI92004.1| DNA-binding protein HU [Arthrospira platensis NIES-39]
Length = 92
Score = 89.8 bits (222), Expect = 1e-16, Method: Composition-based stats.
Identities = 32/90 (35%), Positives = 49/90 (54%), Gaps = 1/90 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K LI +A+K + + + +++ LE + A+A +V + GFGSF RKR AR
Sbjct: 1 MNKGELIDAVAEK-AGVTKKQADAVLSAALESVIDAVATQEKVTLVGFGSFEARKRKARE 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P + + + E VP F AGK KE++
Sbjct: 60 GRNPQTGEKMDIPETWVPAFSAGKMFKEKV 89
>gi|217973689|ref|YP_002358440.1| histone family protein DNA-binding protein [Shewanella baltica
OS223]
gi|217498824|gb|ACK47017.1| histone family protein DNA-binding protein [Shewanella baltica
OS223]
Length = 91
Score = 89.8 bits (222), Expect = 1e-16, Method: Composition-based stats.
Identities = 26/92 (28%), Positives = 49/92 (53%), Gaps = 1/92 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI IA + + + +V +L+++ AL+ G ++ + FG+F +R A+
Sbjct: 1 MNKAQLIQRIAAEL-NASQASTKPVVEQILQQIHVALSEGEKIFLPQFGTFELRYHVAKT 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P + I ++ P F+A LK+++NS
Sbjct: 60 GRNPQTGEAIEIDGYNQPSFKASTALKQQINS 91
>gi|152831|gb|AAA26558.1| integration host factor alpha-subunit [Serratia marcescens]
Length = 98
Score = 89.8 bits (222), Expect = 1e-16, Method: Composition-based stats.
Identities = 28/95 (29%), Positives = 51/95 (53%), Gaps = 1/95 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ + + +K L+ +D + +V + EE+ +AL NG +V++ GFG+F +R + R
Sbjct: 4 TKAEMSEHLFEKL-GLSKRDAKDLVELFFEEVRRALENGEQVKLSGFGNFDLRDKNQRPG 62
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDST 96
R P + I + + V FR G+ LK R+ +
Sbjct: 63 RNPKTGEDIPITARRVVTFRPGQKLKSRVENASPK 97
>gi|258645647|ref|ZP_05733116.1| DNA-binding protein HU [Dialister invisus DSM 15470]
gi|260403011|gb|EEW96558.1| DNA-binding protein HU [Dialister invisus DSM 15470]
Length = 100
Score = 89.8 bits (222), Expect = 1e-16, Method: Composition-based stats.
Identities = 36/92 (39%), Positives = 55/92 (59%), Gaps = 1/92 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI +A + ++ +D EK V +++ ++QAL G +V++ GFG+F VR+R AR
Sbjct: 1 MNKTELISAVA-QTAEMTKKDSEKAVKAVIDVISQALVKGDKVQLIGFGTFEVRQRKARE 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
P QK I + P +R K LKER+NS
Sbjct: 60 GHNPATQKAIKIPASKSPAWRVSKQLKERVNS 91
>gi|237653680|ref|YP_002889994.1| integration host factor subunit alpha [Thauera sp. MZ1T]
gi|237624927|gb|ACR01617.1| integration host factor, alpha subunit [Thauera sp. MZ1T]
Length = 101
Score = 89.8 bits (222), Expect = 1e-16, Method: Composition-based stats.
Identities = 25/89 (28%), Positives = 44/89 (49%), Gaps = 1/89 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ L + ++ LN ++ + +V EE+ AL G V++ GFG+F +R + R
Sbjct: 4 TKAELADLLFEQ-VGLNKREAKDMVEGFFEEIRTALERGDSVKLSGFGNFQLRDKPQRPG 62
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P + I + + V F A + LK +
Sbjct: 63 RNPKTGEEIPITARRVVTFHASQKLKAAV 91
>gi|158339247|ref|YP_001520424.1| DNA-binding protein HU [Acaryochloris marina MBIC11017]
gi|158309488|gb|ABW31105.1| DNA-binding protein HU [Acaryochloris marina MBIC11017]
Length = 91
Score = 89.8 bits (222), Expect = 1e-16, Method: Composition-based stats.
Identities = 29/90 (32%), Positives = 50/90 (55%), Gaps = 1/90 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ L+ +I +K+ + + I++ L E + ++++G +V + GFGSF R R AR
Sbjct: 1 MNKADLVDSIVEKS-GTTKKQADTILSALTETIIDSVSSGEKVTLVGFGSFEARDRKARN 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P K + + P F AGK+ KE++
Sbjct: 60 GRNPQTGKQLKIPATKAPVFSAGKDFKEKV 89
>gi|256820793|ref|YP_003142072.1| histone family protein DNA-binding protein [Capnocytophaga
ochracea DSM 7271]
gi|315223936|ref|ZP_07865781.1| DNA-binding protein HU-beta [Capnocytophaga ochracea F0287]
gi|256582376|gb|ACU93511.1| histone family protein DNA-binding protein [Capnocytophaga
ochracea DSM 7271]
gi|314946108|gb|EFS98112.1| DNA-binding protein HU-beta [Capnocytophaga ochracea F0287]
Length = 92
Score = 89.8 bits (222), Expect = 1e-16, Method: Composition-based stats.
Identities = 38/93 (40%), Positives = 47/93 (50%), Gaps = 1/93 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI IA L D +K V + +AL G +V + GFGS+SV K+ AR
Sbjct: 1 MNKSELIDAIAA-GSGLTKTDSKKAVEAFFSSVEKALKKGDKVAVVGFGSWSVAKKEARE 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSP 93
AR P VI V K V F+AG L E +N
Sbjct: 60 ARNPRTGAVIKVPAKKVVKFKAGAELSEAVNKK 92
>gi|260913274|ref|ZP_05919756.1| DNA-binding protein HU [Pasteurella dagmatis ATCC 43325]
gi|260632861|gb|EEX51030.1| DNA-binding protein HU [Pasteurella dagmatis ATCC 43325]
Length = 90
Score = 89.8 bits (222), Expect = 1e-16, Method: Composition-based stats.
Identities = 32/91 (35%), Positives = 47/91 (51%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI IA +LN + + + LE ++ +L G V++ GFG+F V +R AR
Sbjct: 1 MNKTDLIDAIASA-AELNKKQAKAALEATLEAISGSLKAGQPVQLIGFGTFKVNERKART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P I + VP F AGK LK+ +
Sbjct: 60 GRNPQTGAEIKIAASKVPAFVAGKALKDAVK 90
>gi|221134660|ref|ZP_03560963.1| integration host factor, alpha subunit [Glaciecola sp. HTCC2999]
Length = 99
Score = 89.8 bits (222), Expect = 1e-16, Method: Composition-based stats.
Identities = 28/97 (28%), Positives = 51/97 (52%), Gaps = 1/97 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ + + +K LN +D + +V EE+ +L NG +V++ GFG+F +R + R
Sbjct: 4 TKAEMAEHLFEK-VGLNKKDTKDLVEAFFEEIKVSLENGEQVKLSGFGNFDLRTKKERPG 62
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDSTLS 98
R P + I ++ + V F+ G+ LK R+ + S
Sbjct: 63 RNPKTGEDIPIKARRVVTFKPGQKLKSRVENAPGNDS 99
>gi|91776349|ref|YP_546105.1| integration host factor subunit alpha [Methylobacillus
flagellatus KT]
gi|123254152|sp|Q1GZS3|IHFA_METFK RecName: Full=Integration host factor subunit alpha;
Short=IHF-alpha
gi|91710336|gb|ABE50264.1| integration host factor, alpha subunit [Methylobacillus
flagellatus KT]
Length = 100
Score = 89.8 bits (222), Expect = 1e-16, Method: Composition-based stats.
Identities = 25/89 (28%), Positives = 47/89 (52%), Gaps = 1/89 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ L + ++ LN ++ + +V EE+ AL G V++ GFG+F +R+++ R
Sbjct: 4 TKADLADLLFEQ-VGLNKREAKDMVEAFFEEIRMALEAGDSVKLSGFGNFELRQKSERPG 62
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P + I + + V F A + LK ++
Sbjct: 63 RNPKTGEEIPITARRVVTFHASQKLKSKV 91
>gi|15641235|ref|NP_230867.1| integration host factor subunit alpha [Vibrio cholerae O1 biovar
El Tor str. N16961]
gi|121591560|ref|ZP_01678819.1| integration host factor, alpha subunit [Vibrio cholerae 2740-80]
gi|147673436|ref|YP_001216792.1| integration host factor subunit alpha [Vibrio cholerae O395]
gi|153801913|ref|ZP_01956499.1| integration host factor, alpha subunit [Vibrio cholerae MZO-3]
gi|153831069|ref|ZP_01983736.1| integration host factor, alpha subunit [Vibrio cholerae 623-39]
gi|227081394|ref|YP_002809945.1| integration host factor, alpha subunit [Vibrio cholerae M66-2]
gi|229505185|ref|ZP_04394695.1| integration host factor alpha subunit [Vibrio cholerae BX 330286]
gi|229511144|ref|ZP_04400623.1| integration host factor alpha subunit [Vibrio cholerae B33]
gi|229515602|ref|ZP_04405061.1| integration host factor alpha subunit [Vibrio cholerae TMA 21]
gi|229518262|ref|ZP_04407706.1| integration host factor alpha subunit [Vibrio cholerae RC9]
gi|229521341|ref|ZP_04410760.1| integration host factor alpha subunit [Vibrio cholerae TM
11079-80]
gi|229525828|ref|ZP_04415233.1| integration host factor alpha subunit [Vibrio cholerae bv.
albensis VL426]
gi|229529691|ref|ZP_04419081.1| integration host factor alpha subunit [Vibrio cholerae 12129(1)]
gi|229608205|ref|YP_002878853.1| integration host factor subunit alpha [Vibrio cholerae MJ-1236]
gi|254848347|ref|ZP_05237697.1| integration host factor subunit alpha [Vibrio cholerae MO10]
gi|255745625|ref|ZP_05419573.1| integration host factor alpha subunit [Vibrio cholera CIRS 101]
gi|262159099|ref|ZP_06030211.1| integration host factor alpha subunit [Vibrio cholerae INDRE
91/1]
gi|262169457|ref|ZP_06037149.1| integration host factor alpha subunit [Vibrio cholerae RC27]
gi|297578821|ref|ZP_06940749.1| integration host factor subunit alpha [Vibrio cholerae RC385]
gi|298498680|ref|ZP_07008487.1| integration host factor, alpha subunit [Vibrio cholerae MAK 757]
gi|14194867|sp|Q9KSN4|IHFA_VIBCH RecName: Full=Integration host factor subunit alpha;
Short=IHF-alpha
gi|172047387|sp|A5F1W7|IHFA_VIBC3 RecName: Full=Integration host factor subunit alpha;
Short=IHF-alpha
gi|254803523|sp|C3LLR8|IHFA_VIBCM RecName: Full=Integration host factor subunit alpha;
Short=IHF-alpha
gi|9655703|gb|AAF94381.1| integration host factor, alpha subunit [Vibrio cholerae O1 biovar
El Tor str. N16961]
gi|121546587|gb|EAX56783.1| integration host factor, alpha subunit [Vibrio cholerae 2740-80]
gi|124122558|gb|EAY41301.1| integration host factor, alpha subunit [Vibrio cholerae MZO-3]
gi|146315319|gb|ABQ19858.1| integration host factor, alpha subunit [Vibrio cholerae O395]
gi|148873450|gb|EDL71585.1| integration host factor, alpha subunit [Vibrio cholerae 623-39]
gi|227009282|gb|ACP05494.1| integration host factor, alpha subunit [Vibrio cholerae M66-2]
gi|227013139|gb|ACP09349.1| integration host factor, alpha subunit [Vibrio cholerae O395]
gi|229333465|gb|EEN98951.1| integration host factor alpha subunit [Vibrio cholerae 12129(1)]
gi|229339409|gb|EEO04426.1| integration host factor alpha subunit [Vibrio cholerae bv.
albensis VL426]
gi|229341439|gb|EEO06442.1| integration host factor alpha subunit [Vibrio cholerae TM
11079-80]
gi|229344977|gb|EEO09951.1| integration host factor alpha subunit [Vibrio cholerae RC9]
gi|229347371|gb|EEO12331.1| integration host factor alpha subunit [Vibrio cholerae TMA 21]
gi|229351109|gb|EEO16050.1| integration host factor alpha subunit [Vibrio cholerae B33]
gi|229357408|gb|EEO22325.1| integration host factor alpha subunit [Vibrio cholerae BX 330286]
gi|229370860|gb|ACQ61283.1| integration host factor alpha subunit [Vibrio cholerae MJ-1236]
gi|254844052|gb|EET22466.1| integration host factor subunit alpha [Vibrio cholerae MO10]
gi|255736700|gb|EET92097.1| integration host factor alpha subunit [Vibrio cholera CIRS 101]
gi|262022270|gb|EEY40979.1| integration host factor alpha subunit [Vibrio cholerae RC27]
gi|262029284|gb|EEY47936.1| integration host factor alpha subunit [Vibrio cholerae INDRE
91/1]
gi|297536415|gb|EFH75248.1| integration host factor subunit alpha [Vibrio cholerae RC385]
gi|297543013|gb|EFH79063.1| integration host factor, alpha subunit [Vibrio cholerae MAK 757]
gi|327483918|gb|AEA78325.1| Integration host factor alpha subunit [Vibrio cholerae LMA3894-4]
Length = 98
Score = 89.8 bits (222), Expect = 1e-16, Method: Composition-based stats.
Identities = 26/93 (27%), Positives = 50/93 (53%), Gaps = 1/93 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ L + ++ ++ +D + V + EE+ +AL +G +V++ GFG+F +R + R
Sbjct: 4 TKAELAEALFEQL-GMSKRDAKDTVEVFFEEIRKALESGEQVKLSGFGNFDLRDKNERPG 62
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLNSPD 94
R P + I + + V FR G+ LK R+ +
Sbjct: 63 RNPKTGEDIPITARRVVTFRPGQKLKARVENIK 95
>gi|238919788|ref|YP_002933303.1| integration host factor subunit alpha [Edwardsiella ictaluri
93-146]
gi|259491531|sp|C5B852|IHFA_EDWI9 RecName: Full=Integration host factor subunit alpha;
Short=IHF-alpha
gi|238869357|gb|ACR69068.1| integration host factor, alpha subunit, putative [Edwardsiella
ictaluri 93-146]
Length = 98
Score = 89.8 bits (222), Expect = 1e-16, Method: Composition-based stats.
Identities = 28/96 (29%), Positives = 51/96 (53%), Gaps = 1/96 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ + + +K L+ +D + +V + EE+ +AL NG +V++ GFG+F +R + R
Sbjct: 4 TKAEMSEHLFEKL-GLSKRDAKDLVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 62
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDSTL 97
R P + I + + V FR G+ LK R+ +
Sbjct: 63 RNPKTGEDIPITARRVVTFRPGQKLKCRVENATPKD 98
>gi|325678265|ref|ZP_08157893.1| DNA-binding protein HU-beta [Ruminococcus albus 8]
gi|324110028|gb|EGC04216.1| DNA-binding protein HU-beta [Ruminococcus albus 8]
Length = 92
Score = 89.8 bits (222), Expect = 1e-16, Method: Composition-based stats.
Identities = 33/93 (35%), Positives = 55/93 (59%), Gaps = 1/93 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI IA+K + ++ +K + +L+ +T AL G +V + GFG+F VR RAA++
Sbjct: 1 MNKAELINVIAEK-GGYSKKEADKALAAVLDSITDALEKGEKVTLVGFGTFEVRDRAAKV 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSP 93
A P+ + + V + VP F+AG LK ++
Sbjct: 60 AMNPVTKAPVDVPARKVPAFKAGSALKAAVDKK 92
>gi|400046|sp|P23302|IHFA_SERMA RecName: Full=Integration host factor subunit alpha;
Short=IHF-alpha
Length = 99
Score = 89.8 bits (222), Expect = 1e-16, Method: Composition-based stats.
Identities = 28/95 (29%), Positives = 51/95 (53%), Gaps = 1/95 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ + + +K L+ +D + +V + EE+ +AL NG +V++ GFG+F +R + R
Sbjct: 4 TKAEMSEHLFEKL-GLSKRDAKDLVELFFEEVRRALENGEQVKLSGFGNFDLRDKNQRPG 62
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDST 96
R P + I + + V FR G+ LK R+ +
Sbjct: 63 RNPKTGEDIPITARRVVTFRPGQKLKSRVENASPK 97
>gi|282882471|ref|ZP_06291092.1| DNA-binding protein HU [Peptoniphilus lacrimalis 315-B]
gi|300814663|ref|ZP_07094914.1| DNA-binding protein HU [Peptoniphilus sp. oral taxon 836 str.
F0141]
gi|281297613|gb|EFA90088.1| DNA-binding protein HU [Peptoniphilus lacrimalis 315-B]
gi|300511282|gb|EFK38531.1| DNA-binding protein HU [Peptoniphilus sp. oral taxon 836 str.
F0141]
Length = 92
Score = 89.8 bits (222), Expect = 1e-16, Method: Composition-based stats.
Identities = 38/93 (40%), Positives = 54/93 (58%), Gaps = 2/93 (2%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K L+ +IA K+ L +D EK +N L + +ALA G +V++ GFG+F VR+R AR
Sbjct: 1 MNKQELVASIATKSS-LTKKDAEKALNGFLASVEEALAKGEKVQLVGFGTFEVRQRKARE 59
Query: 61 ARAPLAQKV-ISVEEKMVPFFRAGKNLKERLNS 92
R P + I + P FR+GK LKE +N
Sbjct: 60 GRNPRNPEEVIKIPASKAPVFRSGKALKEAVNK 92
>gi|260580507|ref|ZP_05848335.1| integration host factor, beta subunit [Haemophilus influenzae RdAW]
gi|260092849|gb|EEW76784.1| integration host factor, beta subunit [Haemophilus influenzae RdAW]
Length = 112
Score = 89.8 bits (222), Expect = 1e-16, Method: Composition-based stats.
Identities = 32/91 (35%), Positives = 48/91 (52%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI IA +LN + + + L+ +T +L G V++ GFG+F V +RAAR
Sbjct: 23 MNKTDLIDAIANA-AELNKKQAKAALEATLDAITASLKEGEPVQLIGFGTFKVNERAART 81
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P I + VP F +GK LK+ +
Sbjct: 82 GRNPQTGAEIQIAASKVPAFVSGKALKDAIK 112
>gi|253996949|ref|YP_003049013.1| integration host factor subunit alpha [Methylotenera mobilis
JLW8]
gi|253983628|gb|ACT48486.1| integration host factor, alpha subunit [Methylotenera mobilis
JLW8]
Length = 97
Score = 89.8 bits (222), Expect = 1e-16, Method: Composition-based stats.
Identities = 25/92 (27%), Positives = 49/92 (53%), Gaps = 1/92 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ L + ++ LN ++ + +V EE+ AL G V++ GFG+F +R+++ R
Sbjct: 4 TKAELADLLYEQ-VGLNKREAKDMVEAFFEEVRTALEAGDSVKLSGFGNFELRQKSERPG 62
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLNSP 93
R P + I + + V F A + LK ++++
Sbjct: 63 RNPKTGEEIPITARRVVTFHASQKLKSKVDAN 94
>gi|71083197|ref|YP_265916.1| integration host factor beta-subunit (IHF-beta) [Candidatus
Pelagibacter ubique HTCC1062]
gi|91762373|ref|ZP_01264338.1| Integration host factor beta-subunit (IHF-beta) [Candidatus
Pelagibacter ubique HTCC1002]
gi|71062310|gb|AAZ21313.1| Integration host factor beta-subunit (IHF-beta) [Candidatus
Pelagibacter ubique HTCC1062]
gi|91718175|gb|EAS84825.1| Integration host factor beta-subunit (IHF-beta) [Candidatus
Pelagibacter ubique HTCC1002]
Length = 96
Score = 89.8 bits (222), Expect = 1e-16, Method: Composition-based stats.
Identities = 33/94 (35%), Positives = 56/94 (59%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
++KS L+ +A P +D+EK +++L E+ QAL G RVE+RGFG FS + AR+
Sbjct: 3 IVKSKLLKQLANNYPNFLKKDLEKFTDIILTEIKQALKRGDRVELRGFGMFSTNIQKARI 62
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSPD 94
+R P + ++ EK F+ K + ++LN+ +
Sbjct: 63 SRNPKTGEKVNTPEKKTIHFKMSKEMFKKLNNDE 96
>gi|15603597|ref|NP_246671.1| hypothetical protein PM1732 [Pasteurella multocida subsp.
multocida str. Pm70]
gi|14194596|sp|Q9CK94|DBH_PASMU RecName: Full=DNA-binding protein HU
gi|12722146|gb|AAK03816.1| HupA [Pasteurella multocida subsp. multocida str. Pm70]
Length = 90
Score = 89.8 bits (222), Expect = 1e-16, Method: Composition-based stats.
Identities = 32/91 (35%), Positives = 46/91 (50%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI IA +LN + + + LE ++ +L G V++ GFG+F V R AR
Sbjct: 1 MNKTDLIDAIASA-AELNKKQAKAALEATLEAISGSLKAGEPVQLIGFGTFKVNSRKART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P I + VP F AGK LK+ +
Sbjct: 60 GRNPQTGAEIKIAASKVPAFVAGKALKDAVK 90
>gi|313892973|ref|ZP_07826550.1| DNA-binding protein HU-beta [Veillonella sp. oral taxon 158 str.
F0412]
gi|313442326|gb|EFR60741.1| DNA-binding protein HU-beta [Veillonella sp. oral taxon 158 str.
F0412]
Length = 99
Score = 89.8 bits (222), Expect = 1e-16, Method: Composition-based stats.
Identities = 39/96 (40%), Positives = 61/96 (63%), Gaps = 1/96 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI ++A+K +L +D EK V + + + + LA GG+V++ GFG+F VR+RAAR
Sbjct: 1 MNKTELIASVAQKT-ELTKKDAEKAVKAVFDTVAEELAAGGKVQVIGFGTFEVRERAARE 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDST 96
R P K I++ P F+AGK LKE++N+ +
Sbjct: 60 GRNPQNGKTITIAASKSPAFKAGKGLKEQVNATKAK 95
>gi|30248955|ref|NP_841025.1| integration host factor subunit alpha [Nitrosomonas europaea ATCC
19718]
gi|81722208|sp|Q82VV7|IHFA_NITEU RecName: Full=Integration host factor subunit alpha;
Short=IHF-alpha
gi|30138572|emb|CAD84863.1| Bacterial histone-like DNA-binding protein [Nitrosomonas europaea
ATCC 19718]
Length = 102
Score = 89.8 bits (222), Expect = 1e-16, Method: Composition-based stats.
Identities = 29/92 (31%), Positives = 47/92 (51%), Gaps = 1/92 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ L + + N LN ++ ++IV EEM AL NG V++ GFG+F +R + R
Sbjct: 4 TKAELTDLLFE-NIGLNKREAKEIVECFYEEMRAALQNGDGVKLSGFGNFQLRTKPQRPG 62
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLNSP 93
R P + I + + V F A + LK + +
Sbjct: 63 RNPKTGEEIPISARRVVTFHASQKLKSMVEAN 94
>gi|329895713|ref|ZP_08271117.1| Integration host factor alpha subunit [gamma proteobacterium
IMCC3088]
gi|328922189|gb|EGG29544.1| Integration host factor alpha subunit [gamma proteobacterium
IMCC3088]
Length = 99
Score = 89.8 bits (222), Expect = 1e-16, Method: Composition-based stats.
Identities = 27/95 (28%), Positives = 50/95 (52%), Gaps = 1/95 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
KS + + ++ LN ++ ++IV M EE+ +L + +V++ GFG+F +R + R
Sbjct: 5 TKSDMADMLFEEL-GLNKREAKEIVEMFFEEIRASLESNEQVKLSGFGNFELRDKGERPG 63
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDST 96
R P + I + + V F+ G+ LK R+ T
Sbjct: 64 RNPKTGEEIPISPRRVVTFKPGQKLKARVEKYAGT 98
>gi|294670490|ref|ZP_06735370.1| hypothetical protein NEIELOOT_02208 [Neisseria elongata subsp.
glycolytica ATCC 29315]
gi|291307769|gb|EFE49012.1| hypothetical protein NEIELOOT_02208 [Neisseria elongata subsp.
glycolytica ATCC 29315]
Length = 102
Score = 89.8 bits (222), Expect = 1e-16, Method: Composition-based stats.
Identities = 24/89 (26%), Positives = 43/89 (48%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ L + +K + D ++IV + EE+ L G ++I GFG+F +R + R
Sbjct: 4 TKAELADILVEKVSSVTKNDAKEIVELFFEEIRTTLERGEEIKISGFGNFQLRDKPQRPG 63
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P + + + + V F A + LK +
Sbjct: 64 RNPKTGEEVPISARRVVTFHASQKLKGMV 92
>gi|148264666|ref|YP_001231372.1| histone family protein DNA-binding protein [Geobacter
uraniireducens Rf4]
gi|146398166|gb|ABQ26799.1| histone family protein DNA-binding protein [Geobacter
uraniireducens Rf4]
Length = 92
Score = 89.8 bits (222), Expect = 1e-16, Method: Composition-based stats.
Identities = 22/92 (23%), Positives = 51/92 (55%), Gaps = 1/92 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ ++ I +K + ++ ++V + + + L +G +++I GFG+F V+++A R
Sbjct: 1 MTKADIVERIYEK-VGFSKKESAELVETVFDLIKNTLEDGDKIKIAGFGNFVVKEKADRR 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P + I++ + + F+ + LK +N+
Sbjct: 60 GRNPQTGEEITISARKILTFKPSQVLKAAINN 91
>gi|289522945|ref|ZP_06439799.1| DNA-binding protein HU [Anaerobaculum hydrogeniformans ATCC
BAA-1850]
gi|289503488|gb|EFD24652.1| DNA-binding protein HU [Anaerobaculum hydrogeniformans ATCC
BAA-1850]
Length = 92
Score = 89.8 bits (222), Expect = 1e-16, Method: Composition-based stats.
Identities = 36/91 (39%), Positives = 53/91 (58%), Gaps = 2/91 (2%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS ++ +AK ++ +D V+ ++ + AL+ G V+I GFG+F VR RAAR
Sbjct: 1 MTKSDIVSEVAKAT-GMSKKDAAVAVDAFIKSVVDALSKGEEVQIMGFGTFEVRNRAARK 59
Query: 61 ARAPLAQKV-ISVEEKMVPFFRAGKNLKERL 90
R P + I + EK VP FRAGK LK+ +
Sbjct: 60 GRNPQNPEEIIEIPEKTVPAFRAGKMLKDAV 90
>gi|118580308|ref|YP_901558.1| histone family protein DNA-binding protein [Pelobacter
propionicus DSM 2379]
gi|118503018|gb|ABK99500.1| histone family protein DNA-binding protein [Pelobacter
propionicus DSM 2379]
Length = 90
Score = 89.8 bits (222), Expect = 1e-16, Method: Composition-based stats.
Identities = 36/90 (40%), Positives = 50/90 (55%), Gaps = 1/90 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M +S L+ ++ + ++ EKIV + MT L G R+EIRGFGSF R R
Sbjct: 1 MTRSELVEQLSVR-KDISIGTAEKIVQEIFGSMTDTLIAGDRIEIRGFGSFENRDYDERT 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P + +SV K PFF+ GK+LKER+
Sbjct: 60 GRNPKSGIEVSVAAKKRPFFKVGKDLKERI 89
>gi|238756047|ref|ZP_04617370.1| DNA-binding protein HU-alpha [Yersinia ruckeri ATCC 29473]
gi|238705714|gb|EEP98108.1| DNA-binding protein HU-alpha [Yersinia ruckeri ATCC 29473]
Length = 90
Score = 89.8 bits (222), Expect = 1e-16, Method: Composition-based stats.
Identities = 31/91 (34%), Positives = 47/91 (51%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI IA K L+ + + L +T++L +G +V++ GFG+F V R R
Sbjct: 1 MNKTQLIEVIADK-ADLSKTQAKAALESTLAAITESLKDGEQVQLVGFGTFKVNHRNERT 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P K I + VP F +GK LK+ +
Sbjct: 60 GRNPQTGKEIKIAAANVPAFVSGKALKDSVK 90
>gi|297559169|ref|YP_003678143.1| histone family protein DNA-binding protein [Nocardiopsis
dassonvillei subsp. dassonvillei DSM 43111]
gi|296843617|gb|ADH65637.1| histone family protein DNA-binding protein [Nocardiopsis
dassonvillei subsp. dassonvillei DSM 43111]
Length = 93
Score = 89.8 bits (222), Expect = 1e-16, Method: Composition-based stats.
Identities = 33/95 (34%), Positives = 47/95 (49%), Gaps = 2/95 (2%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K LI I+ + + + VN +L+ + +A+G +V I GFG F +RAAR
Sbjct: 1 MNKRDLIDAISDRLGD--KKTATEAVNAVLDTIQATVASGDKVAITGFGVFEKSERAART 58
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDS 95
AR P I+V VP FRAG + K +N
Sbjct: 59 ARNPATGATINVPASFVPKFRAGADFKALVNGDKK 93
>gi|160903339|ref|YP_001568920.1| histone family protein DNA-binding protein [Petrotoga mobilis
SJ95]
gi|160360983|gb|ABX32597.1| histone family protein DNA-binding protein [Petrotoga mobilis
SJ95]
Length = 90
Score = 89.8 bits (222), Expect = 1e-16, Method: Composition-based stats.
Identities = 36/91 (39%), Positives = 53/91 (58%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K L+ AKK + +D E V+ ++ +++AL+ G V++ GFG+F V+KRAAR
Sbjct: 1 MNKKDLVDAFAKK-ANVTKKDAESFVDAFVDVVSEALSKGEEVKLVGFGTFKVQKRAARK 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
P K I + EKMVP F GK LK+ +
Sbjct: 60 GVNPQTGKAIKIPEKMVPKFVPGKELKDMVK 90
>gi|119469331|ref|ZP_01612270.1| DNA-binding protein HU-alpha (HU-2) [Alteromonadales bacterium
TW-7]
gi|119447195|gb|EAW28464.1| DNA-binding protein HU-alpha (HU-2) [Alteromonadales bacterium
TW-7]
Length = 89
Score = 89.8 bits (222), Expect = 1e-16, Method: Composition-based stats.
Identities = 29/90 (32%), Positives = 51/90 (56%), Gaps = 1/90 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI +A K+ +L +D + + + + +T++L+ G +V+I GFG+F++ AR
Sbjct: 1 MNKTQLIAEMA-KHSELTKKDSQAALTSIQKVITKSLSEGDQVQINGFGTFALSYYPART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P + I +E F+ K LK+RL
Sbjct: 60 GRNPQTGETIEIEGANKAVFKPAKALKDRL 89
>gi|332534858|ref|ZP_08410681.1| DNA-binding protein HU-alpha [Pseudoalteromonas haloplanktis
ANT/505]
gi|332035718|gb|EGI72206.1| DNA-binding protein HU-alpha [Pseudoalteromonas haloplanktis
ANT/505]
Length = 89
Score = 89.8 bits (222), Expect = 1e-16, Method: Composition-based stats.
Identities = 29/90 (32%), Positives = 51/90 (56%), Gaps = 1/90 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ L+ IA+K+ +L +D + ++ L + +T++L+ G +V+I GFG+F++ AR
Sbjct: 1 MNKAELVAAIAQKS-ELTKKDSQAALSSLQKVITKSLSEGDQVQINGFGTFALSYYPART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P I +E F+ K LK+ L
Sbjct: 60 GRNPQTGAAIEIEGANKAVFKPAKALKDLL 89
>gi|330999754|ref|ZP_08323462.1| DNA-binding protein HU-beta [Parasutterella excrementihominis YIT
11859]
gi|329573916|gb|EGG55496.1| DNA-binding protein HU-beta [Parasutterella excrementihominis YIT
11859]
Length = 92
Score = 89.8 bits (222), Expect = 1e-16, Method: Composition-based stats.
Identities = 29/93 (31%), Positives = 49/93 (52%), Gaps = 1/93 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI +A+ + K + DV+ +++ L ++ + + G + + GFG+F KR AR
Sbjct: 1 MNKTELIAAVAEASGK-SKADVKDVLDALTAQIVKTVKAGDEISLVGFGTFKSAKREARA 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSP 93
R P I + + P F AGK K+ LN+
Sbjct: 60 GRNPATGATIQIPASVQPKFVAGKQFKDALNTK 92
>gi|189182932|ref|YP_001936717.1| DNA-binding protein HU [Orientia tsutsugamushi str. Ikeda]
gi|189179703|dbj|BAG39483.1| DNA-binding protein HU [Orientia tsutsugamushi str. Ikeda]
Length = 102
Score = 89.8 bits (222), Expect = 1e-16, Method: Composition-based stats.
Identities = 32/91 (35%), Positives = 48/91 (52%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ + I K N + D+E+ +N++L + +A+ NG + I GFGSF VR RAAR
Sbjct: 12 NKAEFVNFIHKNNTNMTKADIERALNLILRGVEKAIENGHDINIVGFGSFCVRFRAARDG 71
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
P I + E F+ GK LK+ N+
Sbjct: 72 HNPKTGAKIIIPESYQVVFKPGKTLKDACNN 102
>gi|146311386|ref|YP_001176460.1| integration host factor subunit alpha [Enterobacter sp. 638]
gi|261339521|ref|ZP_05967379.1| integration host factor, alpha subunit [Enterobacter cancerogenus
ATCC 35316]
gi|166918504|sp|A4W9M9|IHFA_ENT38 RecName: Full=Integration host factor subunit alpha;
Short=IHF-alpha
gi|145318262|gb|ABP60409.1| integration host factor, alpha subunit [Enterobacter sp. 638]
gi|288318334|gb|EFC57272.1| integration host factor, alpha subunit [Enterobacter cancerogenus
ATCC 35316]
gi|295096105|emb|CBK85195.1| integration host factor, alpha subunit [Enterobacter cloacae
subsp. cloacae NCTC 9394]
Length = 99
Score = 89.8 bits (222), Expect = 1e-16, Method: Composition-based stats.
Identities = 28/95 (29%), Positives = 51/95 (53%), Gaps = 1/95 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ + + K L+ +D +++V + EE+ +AL NG +V++ GFG+F +R + R
Sbjct: 4 TKAEMSEYLFDKL-GLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 62
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDST 96
R P + I + + V FR G+ LK R+ +
Sbjct: 63 RNPKTGEDIPITARRVVTFRPGQKLKSRVENATPK 97
>gi|59800752|ref|YP_207464.1| IfhA [Neisseria gonorrhoeae FA 1090]
gi|194098031|ref|YP_002001079.1| integration host factor subunit alpha [Neisseria gonorrhoeae
NCCP11945]
gi|239998494|ref|ZP_04718418.1| integration host factor subunit alpha [Neisseria gonorrhoeae
35/02]
gi|240013619|ref|ZP_04720532.1| integration host factor subunit alpha [Neisseria gonorrhoeae
DGI18]
gi|240016058|ref|ZP_04722598.1| integration host factor subunit alpha [Neisseria gonorrhoeae
FA6140]
gi|240080200|ref|ZP_04724743.1| integration host factor subunit alpha [Neisseria gonorrhoeae
FA19]
gi|240112413|ref|ZP_04726903.1| integration host factor subunit alpha [Neisseria gonorrhoeae
MS11]
gi|240115153|ref|ZP_04729215.1| integration host factor subunit alpha [Neisseria gonorrhoeae
PID18]
gi|240117437|ref|ZP_04731499.1| integration host factor subunit alpha [Neisseria gonorrhoeae
PID1]
gi|240120689|ref|ZP_04733651.1| integration host factor subunit alpha [Neisseria gonorrhoeae
PID24-1]
gi|240122993|ref|ZP_04735949.1| integration host factor subunit alpha [Neisseria gonorrhoeae
PID332]
gi|240125245|ref|ZP_04738131.1| integration host factor subunit alpha [Neisseria gonorrhoeae
SK-92-679]
gi|240127699|ref|ZP_04740360.1| integration host factor subunit alpha [Neisseria gonorrhoeae
SK-93-1035]
gi|254493213|ref|ZP_05106384.1| integration host factor subunit alpha [Neisseria gonorrhoeae
1291]
gi|260441029|ref|ZP_05794845.1| integration host factor subunit alpha [Neisseria gonorrhoeae
DGI2]
gi|268594353|ref|ZP_06128520.1| integration host factor subunit alpha [Neisseria gonorrhoeae
35/02]
gi|268596349|ref|ZP_06130516.1| integration host factor subunit alpha [Neisseria gonorrhoeae
FA19]
gi|268598476|ref|ZP_06132643.1| integration host factor subunit alpha [Neisseria gonorrhoeae
MS11]
gi|268600829|ref|ZP_06134996.1| integration host factor subunit alpha [Neisseria gonorrhoeae
PID18]
gi|268603134|ref|ZP_06137301.1| integration host factor subunit alpha [Neisseria gonorrhoeae
PID1]
gi|268681615|ref|ZP_06148477.1| integration host factor subunit alpha [Neisseria gonorrhoeae
PID332]
gi|268683843|ref|ZP_06150705.1| integration host factor subunit alpha [Neisseria gonorrhoeae
SK-92-679]
gi|268686084|ref|ZP_06152946.1| integration host factor subunit alpha [Neisseria gonorrhoeae
SK-93-1035]
gi|291044361|ref|ZP_06570070.1| integration host factor subunit alpha [Neisseria gonorrhoeae
DGI2]
gi|293399547|ref|ZP_06643700.1| integration host factor, alpha subunit [Neisseria gonorrhoeae
F62]
gi|75507418|sp|Q5F9T5|IHFA_NEIG1 RecName: Full=Integration host factor subunit alpha;
Short=IHF-alpha
gi|226709736|sp|B4RJZ4|IHFA_NEIG2 RecName: Full=Integration host factor subunit alpha;
Short=IHF-alpha
gi|59717647|gb|AAW89052.1| integration host factor alpha subunit [Neisseria gonorrhoeae FA
1090]
gi|193933321|gb|ACF29145.1| IfhA [Neisseria gonorrhoeae NCCP11945]
gi|226512253|gb|EEH61598.1| integration host factor subunit alpha [Neisseria gonorrhoeae
1291]
gi|268547742|gb|EEZ43160.1| integration host factor subunit alpha [Neisseria gonorrhoeae
35/02]
gi|268550137|gb|EEZ45156.1| integration host factor subunit alpha [Neisseria gonorrhoeae
FA19]
gi|268582607|gb|EEZ47283.1| integration host factor subunit alpha [Neisseria gonorrhoeae
MS11]
gi|268584960|gb|EEZ49636.1| integration host factor subunit alpha [Neisseria gonorrhoeae
PID18]
gi|268587265|gb|EEZ51941.1| integration host factor subunit alpha [Neisseria gonorrhoeae
PID1]
gi|268621899|gb|EEZ54299.1| integration host factor subunit alpha [Neisseria gonorrhoeae
PID332]
gi|268624127|gb|EEZ56527.1| integration host factor subunit alpha [Neisseria gonorrhoeae
SK-92-679]
gi|268626368|gb|EEZ58768.1| integration host factor subunit alpha [Neisseria gonorrhoeae
SK-93-1035]
gi|291011255|gb|EFE03251.1| integration host factor subunit alpha [Neisseria gonorrhoeae
DGI2]
gi|291610116|gb|EFF39238.1| integration host factor, alpha subunit [Neisseria gonorrhoeae
F62]
gi|317163772|gb|ADV07313.1| integration host factor subunit alpha [Neisseria gonorrhoeae
TCDC-NG08107]
Length = 100
Score = 89.8 bits (222), Expect = 1e-16, Method: Composition-based stats.
Identities = 25/89 (28%), Positives = 44/89 (49%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ L + K + D ++IV + EE+ LA+G ++I GFG+F +R + R
Sbjct: 4 TKAELADILVDKVSNVTKNDAKEIVELFFEEIRSTLASGEEIKISGFGNFQLRDKPQRPG 63
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P + + + + V F A + LK +
Sbjct: 64 RNPKTGEEVPITARRVVTFHASQKLKGMV 92
>gi|311279402|ref|YP_003941633.1| integration host factor, alpha subunit [Enterobacter cloacae
SCF1]
gi|308748597|gb|ADO48349.1| integration host factor, alpha subunit [Enterobacter cloacae
SCF1]
Length = 99
Score = 89.8 bits (222), Expect = 1e-16, Method: Composition-based stats.
Identities = 28/95 (29%), Positives = 51/95 (53%), Gaps = 1/95 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ + + K L+ +D +++V + EE+ +AL NG +V++ GFG+F +R + R
Sbjct: 4 TKAEMSEYLFDKL-GLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 62
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDST 96
R P + I + + V FR G+ LK R+ +
Sbjct: 63 RNPKTGEDIPITARRVVTFRPGQKLKSRVENASPK 97
>gi|304397622|ref|ZP_07379499.1| integration host factor, alpha subunit [Pantoea sp. aB]
gi|308186652|ref|YP_003930783.1| Integration host factor subunit alpha (IHF- alpha) [Pantoea vagans
C9-1]
gi|304354794|gb|EFM19164.1| integration host factor, alpha subunit [Pantoea sp. aB]
gi|308057162|gb|ADO09334.1| Integration host factor subunit alpha (IHF- alpha) [Pantoea vagans
C9-1]
Length = 100
Score = 89.8 bits (222), Expect = 1e-16, Method: Composition-based stats.
Identities = 28/98 (28%), Positives = 54/98 (55%), Gaps = 1/98 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ + + +K L+ +D +++V + EE+ +AL NG +V++ GFG+F +R + R
Sbjct: 4 TKAEMSEYLFEKL-GLSKRDAKELVELFFEEVRRALENGEQVKLSGFGNFDLRDKNQRPG 62
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDSTLSN 99
R P + I + + V FR G+ LK R+ + ++
Sbjct: 63 RNPKTGEDIPITARRVVTFRPGQKLKSRVENATPKETD 100
>gi|229170573|ref|ZP_04298221.1| DNA-binding protein HU [Bacillus cereus AH621]
gi|228612922|gb|EEK70099.1| DNA-binding protein HU [Bacillus cereus AH621]
Length = 93
Score = 89.8 bits (222), Expect = 1e-16, Method: Composition-based stats.
Identities = 34/91 (37%), Positives = 52/91 (57%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ L +A+K +L +D +L+ +T ALAN +V+I GFG+F VR+R+AR
Sbjct: 4 MNKTELTKMVAEK-AELTQKDAAVATQAVLDAITNALANEEKVQILGFGTFEVRERSART 62
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + + + VP F+AGK LK +
Sbjct: 63 GRNPQTGEEMQIAASKVPAFKAGKELKAAVK 93
>gi|260428384|ref|ZP_05782363.1| integration host factor, alpha subunit [Citreicella sp. SE45]
gi|260422876|gb|EEX16127.1| integration host factor, alpha subunit [Citreicella sp. SE45]
Length = 149
Score = 89.8 bits (222), Expect = 1e-16, Method: Composition-based stats.
Identities = 27/89 (30%), Positives = 50/89 (56%), Gaps = 1/89 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
+ L + ++ L+ + ++V +L+ M+ AL G +V+I FG+FSVR +AAR+
Sbjct: 56 TRMDLSEAVFRE-VGLSRNESAELVETVLQHMSDALVEGEQVKISSFGTFSVRDKAARVG 114
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P + + ++ + V FR +KER+
Sbjct: 115 RNPKTGEEVPIQPRRVLTFRPSHQMKERV 143
>gi|126663449|ref|ZP_01734446.1| DNA-binding protein HU [Flavobacteria bacterium BAL38]
gi|126624397|gb|EAZ95088.1| DNA-binding protein HU [Flavobacteria bacterium BAL38]
Length = 91
Score = 89.8 bits (222), Expect = 1e-16, Method: Composition-based stats.
Identities = 34/92 (36%), Positives = 46/92 (50%), Gaps = 1/92 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI +A + + + + L + L GGRV + GFGS+SV KRAAR
Sbjct: 1 MNKSELIDAMAA-SAGITKAAAKLALESFLSNVEGTLNKGGRVSLVGFGSWSVSKRAARD 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P K I + K V F+AG L+ +N
Sbjct: 60 GRNPQTGKTIKIAAKNVVKFKAGAELEGAVNK 91
>gi|320353405|ref|YP_004194744.1| histone family protein DNA-binding protein [Desulfobulbus
propionicus DSM 2032]
gi|320121907|gb|ADW17453.1| histone family protein DNA-binding protein [Desulfobulbus
propionicus DSM 2032]
Length = 94
Score = 89.8 bits (222), Expect = 1e-16, Method: Composition-based stats.
Identities = 30/95 (31%), Positives = 53/95 (55%), Gaps = 1/95 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI +AK++ L+ E++VN + + +A+ G +V + GFG+FS RAAR
Sbjct: 1 MNKTELIDKVAKESA-LSKSAAEQVVNSVFSAIAEAMKTGDKVTLAGFGTFSTADRAARE 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDS 95
R P + + I++ K F+ G L + + P++
Sbjct: 60 GRNPQSGEKIAIPAKKAVKFKPGSKLVDVIQCPEN 94
>gi|269137541|ref|YP_003294241.1| transcriptional regulator HU subunit alpha [Edwardsiella tarda
EIB202]
gi|267983201|gb|ACY83030.1| transcriptional regulator HU subunit alpha [Edwardsiella tarda
EIB202]
gi|304557615|gb|ADM40279.1| DNA-binding protein HU-alpha [Edwardsiella tarda FL6-60]
Length = 90
Score = 89.8 bits (222), Expect = 1e-16, Method: Composition-based stats.
Identities = 30/91 (32%), Positives = 44/91 (48%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI IA K L+ + + L +T++L G V++ GFG+F V R R
Sbjct: 1 MNKTQLIDVIADK-ADLSKTQAKAALESTLAAITESLKAGDAVQLVGFGTFKVNHRNERT 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P I + VP F +GK LK+ +
Sbjct: 60 GRNPQTGNEIKIAAANVPAFVSGKALKDAVK 90
>gi|71737446|ref|YP_277186.1| HU family DNA-binding protein [Pseudomonas syringae pv.
phaseolicola 1448A]
gi|257485720|ref|ZP_05639761.1| HU family DNA-binding protein [Pseudomonas syringae pv. tabaci
ATCC 11528]
gi|298489413|ref|ZP_07007424.1| DNA-binding protein HU-alpha [Pseudomonas savastanoi pv.
savastanoi NCPPB 3335]
gi|71557999|gb|AAZ37210.1| DNA-binding protein HU family [Pseudomonas syringae pv.
phaseolicola 1448A]
gi|298155987|gb|EFH97096.1| DNA-binding protein HU-alpha [Pseudomonas savastanoi pv.
savastanoi NCPPB 3335]
gi|320321727|gb|EFW77825.1| HU family DNA-binding protein [Pseudomonas syringae pv. glycinea
str. B076]
gi|320331477|gb|EFW87417.1| HU family DNA-binding protein [Pseudomonas syringae pv. glycinea
str. race 4]
gi|330880920|gb|EGH15069.1| HU family DNA-binding protein [Pseudomonas syringae pv. glycinea
str. race 4]
gi|330890628|gb|EGH23289.1| HU family DNA-binding protein [Pseudomonas syringae pv. mori str.
301020]
gi|330986904|gb|EGH85007.1| HU family DNA-binding protein [Pseudomonas syringae pv.
lachrymans str. M301315]
gi|331012004|gb|EGH92060.1| HU family DNA-binding protein [Pseudomonas syringae pv. tabaci
ATCC 11528]
Length = 91
Score = 89.8 bits (222), Expect = 1e-16, Method: Composition-based stats.
Identities = 29/91 (31%), Positives = 47/91 (51%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K + IA+K L + +++N +LEE+T AL V + GFG+F R R AR
Sbjct: 1 MRKPEVAAAIAEK-ADLTKEQSNRVLNAILEEITGALHRKDSVTLVGFGTFLQRHRGART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
+ P + + ++ F+ GK LK+ +N
Sbjct: 60 GKNPQTGEPVKIKASNTVAFKPGKALKDSVN 90
>gi|328953767|ref|YP_004371101.1| histone family protein DNA-binding protein [Desulfobacca
acetoxidans DSM 11109]
gi|328454091|gb|AEB09920.1| histone family protein DNA-binding protein [Desulfobacca
acetoxidans DSM 11109]
Length = 95
Score = 89.8 bits (222), Expect = 1e-16, Method: Composition-based stats.
Identities = 43/92 (46%), Positives = 54/92 (58%), Gaps = 1/92 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI +A K L + E +VN L E MT AL R+EIRGFGSF V+
Sbjct: 1 MNKSQLIEALA-KAENLTIKRAEMVVNTLFENMTNALVQDERIEIRGFGSFKVKCYEGYQ 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P +VI V +K +PFF+ GK LKER++S
Sbjct: 60 GRNPKTGEVIEVCDKKLPFFKVGKELKERVDS 91
>gi|296102760|ref|YP_003612906.1| integration host factor subunit alpha [Enterobacter cloacae
subsp. cloacae ATCC 13047]
gi|295057219|gb|ADF61957.1| integration host factor subunit alpha [Enterobacter cloacae
subsp. cloacae ATCC 13047]
Length = 99
Score = 89.8 bits (222), Expect = 1e-16, Method: Composition-based stats.
Identities = 28/95 (29%), Positives = 51/95 (53%), Gaps = 1/95 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ + + K L+ +D +++V + EE+ +AL NG +V++ GFG+F +R + R
Sbjct: 4 TKAEMSEYLFDKL-GLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 62
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDST 96
R P + I + + V FR G+ LK R+ +
Sbjct: 63 RNPKTGEDIPITARRVVTFRPGQKLKSRVENATPK 97
>gi|239907249|ref|YP_002953990.1| HU_IHF family transcriptional regulator [Desulfovibrio magneticus
RS-1]
gi|283850195|ref|ZP_06367484.1| histone family protein DNA-binding protein [Desulfovibrio sp.
FW1012B]
gi|303247218|ref|ZP_07333492.1| histone family protein DNA-binding protein [Desulfovibrio
fructosovorans JJ]
gi|239797115|dbj|BAH76104.1| HU_IHF family transcriptional regulator [Desulfovibrio magneticus
RS-1]
gi|283574221|gb|EFC22192.1| histone family protein DNA-binding protein [Desulfovibrio sp.
FW1012B]
gi|302491377|gb|EFL51265.1| histone family protein DNA-binding protein [Desulfovibrio
fructosovorans JJ]
Length = 91
Score = 89.8 bits (222), Expect = 1e-16, Method: Composition-based stats.
Identities = 41/92 (44%), Positives = 54/92 (58%), Gaps = 1/92 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI T+A+ L+ + IVN ++ + QAL N RVEIRGFGSF ++
Sbjct: 1 MNKSELIKTLAE-TKDLHIDEAADIVNAFVDSVKQALINEDRVEIRGFGSFKIKGYKGYT 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P + V++V K +PFFR GK LKE LN
Sbjct: 60 GRNPKSGDVVTVAPKKLPFFRPGKELKEYLNK 91
>gi|254412658|ref|ZP_05026431.1| DNA-binding protein HU [Microcoleus chthonoplastes PCC 7420]
gi|196180393|gb|EDX75384.1| DNA-binding protein HU [Microcoleus chthonoplastes PCC 7420]
Length = 94
Score = 89.8 bits (222), Expect = 1e-16, Method: Composition-based stats.
Identities = 29/90 (32%), Positives = 48/90 (53%), Gaps = 1/90 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K L+ +A+K + + + ++ LE + +A++ G +V + GFGSF R+R AR
Sbjct: 2 MNKGELVDKVAEKAA-VTKKQADAVLTAALESIMEAVSEGDKVTLVGFGSFESRERKARE 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P + + VP F AGK KE++
Sbjct: 61 GRNPKTGDKMEIPATKVPAFSAGKLFKEQV 90
>gi|116748864|ref|YP_845551.1| histone family protein DNA-binding protein [Syntrophobacter
fumaroxidans MPOB]
gi|116697928|gb|ABK17116.1| histone family protein DNA-binding protein [Syntrophobacter
fumaroxidans MPOB]
Length = 96
Score = 89.8 bits (222), Expect = 1e-16, Method: Composition-based stats.
Identities = 39/96 (40%), Positives = 52/96 (54%), Gaps = 1/96 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI T+A K + + E VN+ + M AL R+EIRGFGSF V+
Sbjct: 1 MTKSELIETLA-KAEGITLKAAETAVNVAFQSMENALIRSDRLEIRGFGSFKVKNYEGYK 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDST 96
R P ++I V K +PFF+ GK LKER+N +
Sbjct: 60 GRNPKTGELIEVNSKKLPFFKVGKELKERVNGSEGE 95
>gi|189424977|ref|YP_001952154.1| histone family protein DNA-binding protein [Geobacter lovleyi SZ]
gi|189421236|gb|ACD95634.1| histone family protein DNA-binding protein [Geobacter lovleyi SZ]
Length = 92
Score = 89.8 bits (222), Expect = 1e-16, Method: Composition-based stats.
Identities = 28/93 (30%), Positives = 46/93 (49%), Gaps = 1/93 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K L + ++ + ++ V LL+ + + L G V+I GFG F VR++ AR
Sbjct: 1 MTKIELAKQLHQEL-GIRQKEAADYVEALLDLIKETLEKGENVKISGFGIFEVREKNARR 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSP 93
R P + I++E + V F+ LKE +N
Sbjct: 60 GRNPQTGEAITIEPRRVLTFKPSAILKESINRE 92
>gi|78222818|ref|YP_384565.1| histone-like DNA-binding protein [Geobacter metallireducens
GS-15]
gi|78194073|gb|ABB31840.1| Histone-like DNA-binding protein [Geobacter metallireducens
GS-15]
Length = 96
Score = 89.8 bits (222), Expect = 1e-16, Method: Composition-based stats.
Identities = 36/96 (37%), Positives = 50/96 (52%), Gaps = 1/96 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ L+ +A K+ +L +K VN ++E +T AL G +V + GFGSF V R AR
Sbjct: 1 MTKAELVDAVA-KSAELTKAAADKAVNGVIEAVTAALKKGDKVTLVGFGSFEVATRKART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDST 96
R P K I + VP FR GK LK+ +
Sbjct: 60 GRNPQTGKEIKIAAAKVPKFRPGKALKDAVAGAKKK 95
>gi|15676627|ref|NP_273771.1| integration host factor, alpha subunit [Neisseria meningitidis
MC58]
gi|121634526|ref|YP_974771.1| putative integration host factor alpha-subunit [Neisseria
meningitidis FAM18]
gi|161869670|ref|YP_001598837.1| integration host factor subunit alpha [Neisseria meningitidis
053442]
gi|218767850|ref|YP_002342362.1| integration host factor subunit alpha [Neisseria meningitidis
Z2491]
gi|254804610|ref|YP_003082831.1| integration host factor alpha-subunit [Neisseria meningitidis
alpha14]
gi|304387969|ref|ZP_07370141.1| integration host factor [Neisseria meningitidis ATCC 13091]
gi|54037413|sp|P64393|IHFA_NEIMB RecName: Full=Integration host factor subunit alpha;
Short=IHF-alpha
gi|54041368|sp|P64392|IHFA_NEIMA RecName: Full=Integration host factor subunit alpha;
Short=IHF-alpha
gi|166918511|sp|A1KSZ1|IHFA_NEIMF RecName: Full=Integration host factor subunit alpha;
Short=IHF-alpha
gi|189044703|sp|A9M383|IHFA_NEIM0 RecName: Full=Integration host factor subunit alpha;
Short=IHF-alpha
gi|7225956|gb|AAF41142.1| integration host factor, alpha subunit [Neisseria meningitidis
MC58]
gi|120866232|emb|CAM09972.1| putative integration host factor alpha-subunit [Neisseria
meningitidis FAM18]
gi|121051858|emb|CAM08164.1| putative integration host factor alpha-subunit [Neisseria
meningitidis Z2491]
gi|161595223|gb|ABX72883.1| integration host factor alpha-subunit [Neisseria meningitidis
053442]
gi|254668152|emb|CBA04795.1| integration host factor alpha-subunit [Neisseria meningitidis
alpha14]
gi|254669798|emb|CBA04109.1| integration host factor alpha-subunit [Neisseria meningitidis
alpha153]
gi|261392903|emb|CAX50484.1| integration host factor alpha-subunit (IHF-alpha) [Neisseria
meningitidis 8013]
gi|304337968|gb|EFM04106.1| integration host factor [Neisseria meningitidis ATCC 13091]
gi|308388919|gb|ADO31239.1| putative integration host factor alpha-subunit [Neisseria
meningitidis alpha710]
gi|316983711|gb|EFV62692.1| integration host factor, alpha subunit [Neisseria meningitidis
H44/76]
gi|319410097|emb|CBY90433.1| integration host factor alpha-subunit (IHF-alpha) [Neisseria
meningitidis WUE 2594]
gi|325127847|gb|EGC50754.1| integration host factor, alpha subunit [Neisseria meningitidis
N1568]
gi|325129888|gb|EGC52691.1| integration host factor, alpha subunit [Neisseria meningitidis
OX99.30304]
gi|325131817|gb|EGC54517.1| integration host factor, alpha subunit [Neisseria meningitidis
M6190]
gi|325133756|gb|EGC56412.1| integration host factor, alpha subunit [Neisseria meningitidis
M13399]
gi|325136047|gb|EGC58657.1| integration host factor, alpha subunit [Neisseria meningitidis
M0579]
gi|325137867|gb|EGC60442.1| integration host factor, alpha subunit [Neisseria meningitidis
ES14902]
gi|325140115|gb|EGC62644.1| integration host factor, alpha subunit [Neisseria meningitidis
CU385]
gi|325144067|gb|EGC66375.1| integration host factor, alpha subunit [Neisseria meningitidis
M01-240013]
gi|325197949|gb|ADY93405.1| integration host factor, alpha subunit [Neisseria meningitidis
G2136]
gi|325200586|gb|ADY96041.1| integration host factor, alpha subunit [Neisseria meningitidis
H44/76]
gi|325202474|gb|ADY97928.1| integration host factor, alpha subunit [Neisseria meningitidis
M01-240149]
gi|325203816|gb|ADY99269.1| integration host factor, alpha subunit [Neisseria meningitidis
M01-240355]
gi|325206428|gb|ADZ01881.1| integration host factor, alpha subunit [Neisseria meningitidis
M04-240196]
gi|325207774|gb|ADZ03226.1| integration host factor, alpha subunit [Neisseria meningitidis
NZ-05/33]
Length = 100
Score = 89.8 bits (222), Expect = 1e-16, Method: Composition-based stats.
Identities = 25/89 (28%), Positives = 44/89 (49%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ L + K + D ++IV + EE+ LA+G ++I GFG+F +R + R
Sbjct: 4 TKAELADILVDKVSNVTKNDAKEIVELFFEEIRSTLASGEEIKISGFGNFQLRDKPQRPG 63
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P + + + + V F A + LK +
Sbjct: 64 RNPKTGEEVPITARRVVTFHASQKLKSMV 92
>gi|317491936|ref|ZP_07950370.1| integration host protein [Enterobacteriaceae bacterium 9_2_54FAA]
gi|322833533|ref|YP_004213560.1| integration host factor, subunit alpha [Rahnella sp. Y9602]
gi|316920057|gb|EFV41382.1| integration host protein [Enterobacteriaceae bacterium 9_2_54FAA]
gi|321168734|gb|ADW74433.1| integration host factor, alpha subunit [Rahnella sp. Y9602]
Length = 98
Score = 89.4 bits (221), Expect = 1e-16, Method: Composition-based stats.
Identities = 28/95 (29%), Positives = 51/95 (53%), Gaps = 1/95 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ + + +K L+ +D + +V + EE+ +AL NG +V++ GFG+F +R + R
Sbjct: 4 TKAEMSEHLFEKL-GLSKRDAKDLVEIFFEEVRRALENGEQVKLSGFGNFDLRDKNQRPG 62
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDST 96
R P + I + + V FR G+ LK R+ +
Sbjct: 63 RNPKTGEDIPITARRVVTFRPGQKLKSRVENATPK 97
>gi|237731275|ref|ZP_04561756.1| integration host factor subunit alpha [Citrobacter sp. 30_2]
gi|283833385|ref|ZP_06353126.1| integration host factor, alpha subunit [Citrobacter youngae ATCC
29220]
gi|226906814|gb|EEH92732.1| integration host factor subunit alpha [Citrobacter sp. 30_2]
gi|291071034|gb|EFE09143.1| integration host factor, alpha subunit [Citrobacter youngae ATCC
29220]
Length = 99
Score = 89.4 bits (221), Expect = 1e-16, Method: Composition-based stats.
Identities = 28/95 (29%), Positives = 51/95 (53%), Gaps = 1/95 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ + + K L+ +D +++V + EE+ +AL NG +V++ GFG+F +R + R
Sbjct: 4 TKAEMSEYLFDKL-GLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 62
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDST 96
R P + I + + V FR G+ LK R+ +
Sbjct: 63 RNPKTGEDIPITARRVVTFRPGQKLKSRVENATPK 97
>gi|16760555|ref|NP_456172.1| integration host factor subunit alpha [Salmonella enterica subsp.
enterica serovar Typhi str. CT18]
gi|16764690|ref|NP_460305.1| integration host factor subunit alpha [Salmonella enterica subsp.
enterica serovar Typhimurium str. LT2]
gi|29141684|ref|NP_805026.1| integration host factor subunit alpha [Salmonella enterica subsp.
enterica serovar Typhi str. Ty2]
gi|56413674|ref|YP_150749.1| integration host factor subunit alpha [Salmonella enterica subsp.
enterica serovar Paratyphi A str. ATCC 9150]
gi|62179928|ref|YP_216345.1| integration host factor subunit alpha [Salmonella enterica subsp.
enterica serovar Choleraesuis str. SC-B67]
gi|157145985|ref|YP_001453304.1| integration host factor subunit alpha [Citrobacter koseri ATCC
BAA-895]
gi|161614253|ref|YP_001588218.1| integration host factor subunit alpha [Salmonella enterica subsp.
enterica serovar Paratyphi B str. SPB7]
gi|167551702|ref|ZP_02345456.1| integration host factor, alpha subunit [Salmonella enterica
subsp. enterica serovar Saintpaul str. SARA29]
gi|167994355|ref|ZP_02575447.1| integration host factor, alpha subunit [Salmonella enterica
subsp. enterica serovar 4,[5],12:i:- str. CVM23701]
gi|168233523|ref|ZP_02658581.1| integration host factor, alpha subunit [Salmonella enterica
subsp. enterica serovar Kentucky str. CDC 191]
gi|168239546|ref|ZP_02664604.1| integration host factor, alpha subunit [Salmonella enterica
subsp. enterica serovar Schwarzengrund str. SL480]
gi|168240842|ref|ZP_02665774.1| integration host factor, alpha subunit [Salmonella enterica
subsp. enterica serovar Heidelberg str. SL486]
gi|168263840|ref|ZP_02685813.1| integration host factor, alpha subunit [Salmonella enterica
subsp. enterica serovar Hadar str. RI_05P066]
gi|168463260|ref|ZP_02697191.1| integration host factor, alpha subunit [Salmonella enterica
subsp. enterica serovar Newport str. SL317]
gi|168822198|ref|ZP_02834198.1| integration host factor, alpha subunit [Salmonella enterica
subsp. enterica serovar Weltevreden str. HI_N05-537]
gi|194443596|ref|YP_002040596.1| integration host factor subunit alpha [Salmonella enterica subsp.
enterica serovar Newport str. SL254]
gi|194447585|ref|YP_002045346.1| integration host factor subunit alpha [Salmonella enterica subsp.
enterica serovar Heidelberg str. SL476]
gi|194469176|ref|ZP_03075160.1| integration host factor, alpha subunit [Salmonella enterica
subsp. enterica serovar Kentucky str. CVM29188]
gi|194736601|ref|YP_002114356.1| integration host factor subunit alpha [Salmonella enterica subsp.
enterica serovar Schwarzengrund str. CVM19633]
gi|197249705|ref|YP_002146698.1| integration host factor subunit alpha [Salmonella enterica subsp.
enterica serovar Agona str. SL483]
gi|197265740|ref|ZP_03165814.1| integration host factor, alpha subunit [Salmonella enterica
subsp. enterica serovar Saintpaul str. SARA23]
gi|197362598|ref|YP_002142235.1| integration host factor subunit alpha [Salmonella enterica subsp.
enterica serovar Paratyphi A str. AKU_12601]
gi|198244241|ref|YP_002215787.1| integration host factor subunit alpha [Salmonella enterica subsp.
enterica serovar Dublin str. CT_02021853]
gi|200390104|ref|ZP_03216715.1| integration host factor, alpha subunit [Salmonella enterica
subsp. enterica serovar Virchow str. SL491]
gi|204927937|ref|ZP_03219138.1| integration host factor, alpha subunit [Salmonella enterica
subsp. enterica serovar Javiana str. GA_MM04042433]
gi|205352938|ref|YP_002226739.1| integration host factor subunit alpha [Salmonella enterica subsp.
enterica serovar Gallinarum str. 287/91]
gi|207857154|ref|YP_002243805.1| integration host factor subunit alpha [Salmonella enterica subsp.
enterica serovar Enteritidis str. P125109]
gi|213022625|ref|ZP_03337072.1| integration host factor subunit alpha [Salmonella enterica subsp.
enterica serovar Typhi str. 404ty]
gi|213160963|ref|ZP_03346673.1| integration host factor subunit alpha [Salmonella enterica subsp.
enterica serovar Typhi str. E00-7866]
gi|213421813|ref|ZP_03354879.1| integration host factor subunit alpha [Salmonella enterica subsp.
enterica serovar Typhi str. E01-6750]
gi|213426326|ref|ZP_03359076.1| integration host factor subunit alpha [Salmonella enterica subsp.
enterica serovar Typhi str. E02-1180]
gi|213586389|ref|ZP_03368215.1| integration host factor subunit alpha [Salmonella enterica subsp.
enterica serovar Typhi str. E98-0664]
gi|213618534|ref|ZP_03372360.1| integration host factor subunit alpha [Salmonella enterica subsp.
enterica serovar Typhi str. E98-2068]
gi|213857558|ref|ZP_03384529.1| integration host factor subunit alpha [Salmonella enterica subsp.
enterica serovar Typhi str. M223]
gi|224584149|ref|YP_002637947.1| integration host factor subunit alpha [Salmonella enterica subsp.
enterica serovar Paratyphi C strain RKS4594]
gi|238910845|ref|ZP_04654682.1| integration host factor subunit alpha [Salmonella enterica subsp.
enterica serovar Tennessee str. CDC07-0191]
gi|289806332|ref|ZP_06536961.1| integration host factor subunit alpha [Salmonella enterica subsp.
enterica serovar Typhi str. AG3]
gi|60392433|sp|P0A1S0|IHFA_SALTY RecName: Full=Integration host factor subunit alpha;
Short=IHF-alpha
gi|60392434|sp|P0A1S1|IHFA_SALTI RecName: Full=Integration host factor subunit alpha;
Short=IHF-alpha
gi|75505782|sp|Q57PU7|IHFA_SALCH RecName: Full=Integration host factor subunit alpha;
Short=IHF-alpha
gi|81677883|sp|Q5PH86|IHFA_SALPA RecName: Full=Integration host factor subunit alpha;
Short=IHF-alpha
gi|166918501|sp|A8AHA5|IHFA_CITK8 RecName: Full=Integration host factor subunit alpha;
Short=IHF-alpha
gi|189044706|sp|A9N236|IHFA_SALPB RecName: Full=Integration host factor subunit alpha;
Short=IHF-alpha
gi|226709745|sp|B5F7F6|IHFA_SALA4 RecName: Full=Integration host factor subunit alpha;
Short=IHF-alpha
gi|226709746|sp|B5FJA2|IHFA_SALDC RecName: Full=Integration host factor subunit alpha;
Short=IHF-alpha
gi|226709747|sp|B5QVW2|IHFA_SALEP RecName: Full=Integration host factor subunit alpha;
Short=IHF-alpha
gi|226709748|sp|B5RAW7|IHFA_SALG2 RecName: Full=Integration host factor subunit alpha;
Short=IHF-alpha
gi|226709749|sp|B4TGH7|IHFA_SALHS RecName: Full=Integration host factor subunit alpha;
Short=IHF-alpha
gi|226709750|sp|B4T4N4|IHFA_SALNS RecName: Full=Integration host factor subunit alpha;
Short=IHF-alpha
gi|226709751|sp|B5BA36|IHFA_SALPK RecName: Full=Integration host factor subunit alpha;
Short=IHF-alpha
gi|226709752|sp|B4TUF6|IHFA_SALSV RecName: Full=Integration host factor subunit alpha;
Short=IHF-alpha
gi|254803520|sp|C0Q640|IHFA_SALPC RecName: Full=Integration host factor subunit alpha;
Short=IHF-alpha
gi|25294356|pir||AD0705 integration host factor alpha-chain [imported] - Salmonella
enterica subsp. enterica serovar Typhi (strain CT18)
gi|16419858|gb|AAL20264.1| integration host factor (IHF), alpha subunit [Salmonella enterica
subsp. enterica serovar Typhimurium str. LT2]
gi|16502851|emb|CAD02013.1| integration host factor alpha-subunit [Salmonella enterica subsp.
enterica serovar Typhi]
gi|29137312|gb|AAO68875.1| integration host factor alpha-subunit [Salmonella enterica subsp.
enterica serovar Typhi str. Ty2]
gi|56127931|gb|AAV77437.1| integration host factor alpha-subunit [Salmonella enterica subsp.
enterica serovar Paratyphi A str. ATCC 9150]
gi|62127561|gb|AAX65264.1| integration host factor (IHF), alpha subunit [Salmonella enterica
subsp. enterica serovar Choleraesuis str. SC-B67]
gi|157083190|gb|ABV12868.1| hypothetical protein CKO_01739 [Citrobacter koseri ATCC BAA-895]
gi|161363617|gb|ABX67385.1| hypothetical protein SPAB_01998 [Salmonella enterica subsp.
enterica serovar Paratyphi B str. SPB7]
gi|194402259|gb|ACF62481.1| integration host factor, alpha subunit [Salmonella enterica
subsp. enterica serovar Newport str. SL254]
gi|194405889|gb|ACF66108.1| integration host factor, alpha subunit [Salmonella enterica
subsp. enterica serovar Heidelberg str. SL476]
gi|194455540|gb|EDX44379.1| integration host factor, alpha subunit [Salmonella enterica
subsp. enterica serovar Kentucky str. CVM29188]
gi|194712103|gb|ACF91324.1| integration host factor, alpha subunit [Salmonella enterica
subsp. enterica serovar Schwarzengrund str. CVM19633]
gi|195634129|gb|EDX52481.1| integration host factor, alpha subunit [Salmonella enterica
subsp. enterica serovar Newport str. SL317]
gi|197094075|emb|CAR59575.1| integration host factor alpha-subunit [Salmonella enterica subsp.
enterica serovar Paratyphi A str. AKU_12601]
gi|197213408|gb|ACH50805.1| integration host factor, alpha subunit [Salmonella enterica
subsp. enterica serovar Agona str. SL483]
gi|197243995|gb|EDY26615.1| integration host factor, alpha subunit [Salmonella enterica
subsp. enterica serovar Saintpaul str. SARA23]
gi|197287774|gb|EDY27164.1| integration host factor, alpha subunit [Salmonella enterica
subsp. enterica serovar Schwarzengrund str. SL480]
gi|197938757|gb|ACH76090.1| integration host factor, alpha subunit [Salmonella enterica
subsp. enterica serovar Dublin str. CT_02021853]
gi|199602549|gb|EDZ01095.1| integration host factor, alpha subunit [Salmonella enterica
subsp. enterica serovar Virchow str. SL491]
gi|204323279|gb|EDZ08475.1| integration host factor, alpha subunit [Salmonella enterica
subsp. enterica serovar Javiana str. GA_MM04042433]
gi|205272719|emb|CAR37635.1| Integration host factor alpha-subunit [Salmonella enterica subsp.
enterica serovar Gallinarum str. 287/91]
gi|205323612|gb|EDZ11451.1| integration host factor, alpha subunit [Salmonella enterica
subsp. enterica serovar Saintpaul str. SARA29]
gi|205327760|gb|EDZ14524.1| integration host factor, alpha subunit [Salmonella enterica
subsp. enterica serovar 4,[5],12:i:- str. CVM23701]
gi|205332324|gb|EDZ19088.1| integration host factor, alpha subunit [Salmonella enterica
subsp. enterica serovar Kentucky str. CDC 191]
gi|205339460|gb|EDZ26224.1| integration host factor, alpha subunit [Salmonella enterica
subsp. enterica serovar Heidelberg str. SL486]
gi|205341281|gb|EDZ28045.1| integration host factor, alpha subunit [Salmonella enterica
subsp. enterica serovar Weltevreden str. HI_N05-537]
gi|205347544|gb|EDZ34175.1| integration host factor, alpha subunit [Salmonella enterica
subsp. enterica serovar Hadar str. RI_05P066]
gi|206708957|emb|CAR33287.1| Integration host factor alpha-subunit [Salmonella enterica subsp.
enterica serovar Enteritidis str. P125109]
gi|224468676|gb|ACN46506.1| integration host factor alpha subunit [Salmonella enterica subsp.
enterica serovar Paratyphi C strain RKS4594]
gi|261246548|emb|CBG24358.1| integration host factor alpha-subunit [Salmonella enterica subsp.
enterica serovar Typhimurium str. D23580]
gi|267993220|gb|ACY88105.1| integration host factor subunit alpha [Salmonella enterica subsp.
enterica serovar Typhimurium str. 14028S]
gi|301157876|emb|CBW17370.1| integration host factor alpha-subunit [Salmonella enterica subsp.
enterica serovar Typhimurium str. SL1344]
gi|312912324|dbj|BAJ36298.1| integration host factor subunit alpha [Salmonella enterica subsp.
enterica serovar Typhimurium str. T000240]
gi|320086181|emb|CBY95955.1| Integration host factor subunit alpha IHF-alpha [Salmonella
enterica subsp. enterica serovar Weltevreden str.
2007-60-3289-1]
gi|321223967|gb|EFX49030.1| Integration host factor alpha subunit [Salmonella enterica subsp.
enterica serovar Typhimurium str. TN061786]
gi|322616724|gb|EFY13633.1| integration host factor subunit alpha [Salmonella enterica subsp.
enterica serovar Montevideo str. 315996572]
gi|322620017|gb|EFY16890.1| integration host factor subunit alpha [Salmonella enterica subsp.
enterica serovar Montevideo str. 495297-1]
gi|322622327|gb|EFY19172.1| integration host factor subunit alpha [Salmonella enterica subsp.
enterica serovar Montevideo str. 495297-3]
gi|322627851|gb|EFY24641.1| integration host factor subunit alpha [Salmonella enterica subsp.
enterica serovar Montevideo str. 495297-4]
gi|322633051|gb|EFY29794.1| integration host factor subunit alpha [Salmonella enterica subsp.
enterica serovar Montevideo str. 515920-1]
gi|322636703|gb|EFY33406.1| integration host factor subunit alpha [Salmonella enterica subsp.
enterica serovar Montevideo str. 515920-2]
gi|322641271|gb|EFY37912.1| integration host factor subunit alpha [Salmonella enterica subsp.
enterica serovar Montevideo str. 531954]
gi|322645260|gb|EFY41789.1| integration host factor subunit alpha [Salmonella enterica subsp.
enterica serovar Montevideo str. NC_MB110209-0054]
gi|322650201|gb|EFY46615.1| integration host factor subunit alpha [Salmonella enterica subsp.
enterica serovar Montevideo str. OH_2009072675]
gi|322655775|gb|EFY52077.1| integration host factor subunit alpha [Salmonella enterica subsp.
enterica serovar Montevideo str. CASC_09SCPH15965]
gi|322660101|gb|EFY56340.1| integration host factor subunit alpha [Salmonella enterica subsp.
enterica serovar Montevideo str. 19N]
gi|322665332|gb|EFY61520.1| integration host factor subunit alpha [Salmonella enterica subsp.
enterica serovar Montevideo str. 81038-01]
gi|322669590|gb|EFY65738.1| integration host factor subunit alpha [Salmonella enterica subsp.
enterica serovar Montevideo str. MD_MDA09249507]
gi|322673516|gb|EFY69618.1| integration host factor subunit alpha [Salmonella enterica subsp.
enterica serovar Montevideo str. 414877]
gi|322677442|gb|EFY73506.1| integration host factor subunit alpha [Salmonella enterica subsp.
enterica serovar Montevideo str. 366867]
gi|322679893|gb|EFY75932.1| integration host factor subunit alpha [Salmonella enterica subsp.
enterica serovar Montevideo str. 413180]
gi|322687365|gb|EFY83337.1| integration host factor subunit alpha [Salmonella enterica subsp.
enterica serovar Montevideo str. 446600]
gi|322714394|gb|EFZ05965.1| integration host factor subunit alpha [Salmonella enterica subsp.
enterica serovar Choleraesuis str. A50]
gi|323129610|gb|ADX17040.1| integration host factor subunit alpha [Salmonella enterica subsp.
enterica serovar Typhimurium str. 4/74]
gi|323192483|gb|EFZ77713.1| integration host factor subunit alpha [Salmonella enterica subsp.
enterica serovar Montevideo str. 609458-1]
gi|323198662|gb|EFZ83763.1| integration host factor subunit alpha [Salmonella enterica subsp.
enterica serovar Montevideo str. 556150-1]
gi|323204090|gb|EFZ89104.1| integration host factor subunit alpha [Salmonella enterica subsp.
enterica serovar Montevideo str. 609460]
gi|323208709|gb|EFZ93647.1| integration host factor subunit alpha [Salmonella enterica subsp.
enterica serovar Montevideo str. 507440-20]
gi|323210222|gb|EFZ95121.1| integration host factor subunit alpha [Salmonella enterica subsp.
enterica serovar Montevideo str. 556152]
gi|323217685|gb|EGA02400.1| integration host factor subunit alpha [Salmonella enterica subsp.
enterica serovar Montevideo str. MB101509-0077]
gi|323220078|gb|EGA04545.1| integration host factor subunit alpha [Salmonella enterica subsp.
enterica serovar Montevideo str. MB102109-0047]
gi|323223495|gb|EGA07821.1| integration host factor subunit alpha [Salmonella enterica subsp.
enterica serovar Montevideo str. MB110209-0055]
gi|323229487|gb|EGA13610.1| integration host factor subunit alpha [Salmonella enterica subsp.
enterica serovar Montevideo str. MB111609-0052]
gi|323232710|gb|EGA16806.1| integration host factor subunit alpha [Salmonella enterica subsp.
enterica serovar Montevideo str. 2009083312]
gi|323240251|gb|EGA24295.1| integration host factor subunit alpha [Salmonella enterica subsp.
enterica serovar Montevideo str. 2009085258]
gi|323242761|gb|EGA26782.1| integration host factor subunit alpha [Salmonella enterica subsp.
enterica serovar Montevideo str. 315731156]
gi|323249077|gb|EGA32996.1| integration host factor subunit alpha [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2009159199]
gi|323252784|gb|EGA36621.1| integration host factor subunit alpha [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008282]
gi|323255606|gb|EGA39362.1| integration host factor subunit alpha [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008283]
gi|323260117|gb|EGA43742.1| integration host factor subunit alpha [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008284]
gi|323267119|gb|EGA50604.1| integration host factor subunit alpha [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008285]
gi|323271557|gb|EGA54978.1| integration host factor subunit alpha [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008287]
gi|326623534|gb|EGE29879.1| integration host factor subunit alpha [Salmonella enterica subsp.
enterica serovar Dublin str. 3246]
gi|326628011|gb|EGE34354.1| integration host factor subunit alpha [Salmonella enterica subsp.
enterica serovar Gallinarum str. 9]
gi|332988227|gb|AEF07210.1| integration host factor subunit alpha [Salmonella enterica subsp.
enterica serovar Typhimurium str. UK-1]
Length = 99
Score = 89.4 bits (221), Expect = 1e-16, Method: Composition-based stats.
Identities = 28/95 (29%), Positives = 51/95 (53%), Gaps = 1/95 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ + + K L+ +D +++V + EE+ +AL NG +V++ GFG+F +R + R
Sbjct: 4 TKAEMSEYLFDKL-GLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 62
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDST 96
R P + I + + V FR G+ LK R+ +
Sbjct: 63 RNPKTGEDIPITARRVVTFRPGQKLKSRVENASPK 97
>gi|303257169|ref|ZP_07343183.1| DNA-binding protein HU [Burkholderiales bacterium 1_1_47]
gi|331000812|ref|ZP_08324458.1| DNA-binding protein HU-beta [Parasutterella excrementihominis YIT
11859]
gi|302860660|gb|EFL83737.1| DNA-binding protein HU [Burkholderiales bacterium 1_1_47]
gi|329570340|gb|EGG52073.1| DNA-binding protein HU-beta [Parasutterella excrementihominis YIT
11859]
Length = 105
Score = 89.4 bits (221), Expect = 1e-16, Method: Composition-based stats.
Identities = 31/95 (32%), Positives = 48/95 (50%), Gaps = 1/95 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ +I +A + L +V K++N + + + +A GG + GFG F +R AR
Sbjct: 1 MNKTEMIEAVASET-GLAKTEVAKVLNAYTDTIVKTVAEGGEYTVIGFGKFYASQRQART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDS 95
R P I + MVP F AGK K+ +N+P
Sbjct: 60 GRNPSTGVEIKIPAAMVPKFTAGKAFKDAVNAPKK 94
>gi|332292782|ref|YP_004431391.1| histone family protein DNA-binding protein [Krokinobacter
diaphorus 4H-3-7-5]
gi|332170868|gb|AEE20123.1| histone family protein DNA-binding protein [Krokinobacter
diaphorus 4H-3-7-5]
Length = 90
Score = 89.4 bits (221), Expect = 1e-16, Method: Composition-based stats.
Identities = 34/91 (37%), Positives = 49/91 (53%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI +A+ + + +K + L ++ + L +GGRV + GFGS+SV KR AR
Sbjct: 1 MNKSELIDGMAE-HAGITKAAAKKALESFLGDVEKTLKDGGRVSLVGFGSWSVSKRNARE 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P K I + K V F+AG L +N
Sbjct: 60 GRNPQTGKTIKIAAKNVVKFKAGSELATSVN 90
>gi|220931899|ref|YP_002508807.1| histone family protein DNA-binding protein [Halothermothrix orenii
H 168]
gi|219993209|gb|ACL69812.1| histone family protein DNA-binding protein [Halothermothrix orenii
H 168]
Length = 137
Score = 89.4 bits (221), Expect = 1e-16, Method: Composition-based stats.
Identities = 31/98 (31%), Positives = 51/98 (52%), Gaps = 9/98 (9%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANG--------GRVEIRGFGSFS 52
M K+ L+ +A K L +D K V + + + + L++ V+I GFG+F
Sbjct: 39 MTKTDLVDAVAAKT-GLTKKDSNKAVKAVFDSIVEHLSDESKKAEGDRDSVQIIGFGTFE 97
Query: 53 VRKRAARLARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
V+ R+AR R P + I++ + VP FR GK+ KE +
Sbjct: 98 VKDRSARKGRNPQTGEEITIPARTVPVFRPGKSFKEAV 135
>gi|126667906|ref|ZP_01738871.1| integration host factor subunit alpha [Marinobacter sp. ELB17]
gi|126627566|gb|EAZ98198.1| integration host factor subunit alpha [Marinobacter sp. ELB17]
Length = 100
Score = 89.4 bits (221), Expect = 1e-16, Method: Composition-based stats.
Identities = 23/89 (25%), Positives = 47/89 (52%), Gaps = 1/89 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ + + + LN ++ +++V +E+ AL + +V++ GFG+F +R + R
Sbjct: 5 TKAEMAERLYDEL-GLNKREAKEMVEAFFDEVRGALGHNEQVKLSGFGNFDLRDKKERPG 63
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P + I + + V FR G+ LK ++
Sbjct: 64 RNPKTGEEIPICARRVVTFRPGQKLKAKV 92
>gi|91787981|ref|YP_548933.1| integration host factor subunit alpha [Polaromonas sp. JS666]
gi|123059944|sp|Q12BQ7|IHFA_POLSJ RecName: Full=Integration host factor subunit alpha;
Short=IHF-alpha
gi|91697206|gb|ABE44035.1| integration host factor, alpha subunit [Polaromonas sp. JS666]
Length = 111
Score = 89.4 bits (221), Expect = 1e-16, Method: Composition-based stats.
Identities = 23/89 (25%), Positives = 49/89 (55%), Gaps = 1/89 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ L + ++ LN ++ + +++ + ++ +L +G V+I GFG+F +R +A R
Sbjct: 14 TKAHLAELLFEQI-GLNKRESKDMIDAFFDLISDSLVDGNDVKISGFGNFQIRTKAPRPG 72
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P + I ++ + V F A LK+++
Sbjct: 73 RNPRTGEAIPIQARRVVTFHASHKLKDQI 101
>gi|329890586|ref|ZP_08268929.1| DNA-binding protein HRm [Brevundimonas diminuta ATCC 11568]
gi|328845887|gb|EGF95451.1| DNA-binding protein HRm [Brevundimonas diminuta ATCC 11568]
Length = 92
Score = 89.4 bits (221), Expect = 1e-16, Method: Composition-based stats.
Identities = 26/90 (28%), Positives = 44/90 (48%), Gaps = 1/90 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
++ LI +A K+ ++ D K++ ++E + ++L +GG V I G F +RA R
Sbjct: 3 TQAELIAAVA-KDAGVSQADAGKVLTAIVENIHKSLKSGGDVRISNLGVFDTAERAEREG 61
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P I + FR K LK+ +N
Sbjct: 62 RNPATGATIKIPASKAVRFRVSKPLKDAVN 91
>gi|160872885|ref|ZP_02063017.1| DNA-binding protein HU-beta [Rickettsiella grylli]
gi|159121684|gb|EDP47022.1| DNA-binding protein HU-beta [Rickettsiella grylli]
Length = 92
Score = 89.4 bits (221), Expect = 1e-16, Method: Composition-based stats.
Identities = 31/90 (34%), Positives = 47/90 (52%), Gaps = 1/90 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI I + ++ K + +L+ +T+AL G V + GFG+ VR R AR
Sbjct: 1 MNKSDLIDVIGEA-AQIPKNVAGKTLEKILDSITKALCEGEDVSLVGFGALCVRHRKART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P + I ++ V F+AGK LK+ +
Sbjct: 60 GRNPKTGESIPIKASNVVAFKAGKVLKDAV 89
>gi|188577593|ref|YP_001914522.1| integration host factor subunit alpha [Xanthomonas oryzae pv.
oryzae PXO99A]
gi|188522045|gb|ACD59990.1| integration host factor, alpha subunit [Xanthomonas oryzae pv.
oryzae PXO99A]
Length = 92
Score = 89.4 bits (221), Expect = 1e-16, Method: Composition-based stats.
Identities = 24/75 (32%), Positives = 43/75 (57%)
Query: 16 KLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLARAPLAQKVISVEEK 75
LN ++ ++ V+ + + AL G +V++ GFG+F +R++ R R P + I + +
Sbjct: 10 GLNKREAKEFVDAFFDVLRDALEQGRQVKLSGFGNFDLRRKNQRPGRNPKTGEEIPISAR 69
Query: 76 MVPFFRAGKNLKERL 90
V FR G+ LKER+
Sbjct: 70 TVVTFRPGQKLKERV 84
>gi|229170534|ref|ZP_04298182.1| DNA-binding protein HU [Bacillus cereus AH621]
gi|228612883|gb|EEK70060.1| DNA-binding protein HU [Bacillus cereus AH621]
Length = 93
Score = 89.4 bits (221), Expect = 1e-16, Method: Composition-based stats.
Identities = 34/91 (37%), Positives = 51/91 (56%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ L +A+K +L +D +L +T ALAN +V+I GFG+F VR+R+AR
Sbjct: 4 MNKAELTKMVAEK-AELTQKDAAAATQAVLNAITNALANEEKVQILGFGTFEVRERSART 62
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + + + P F+AGK LKE +
Sbjct: 63 GRNPQTGEEMQIAASKAPAFKAGKELKEAVK 93
>gi|119897376|ref|YP_932589.1| integration host factor subunit alpha [Azoarcus sp. BH72]
gi|189044692|sp|A1K4E7|IHFA_AZOSB RecName: Full=Integration host factor subunit alpha;
Short=IHF-alpha
gi|119669789|emb|CAL93702.1| integration host factor alpha-subunit [Azoarcus sp. BH72]
Length = 103
Score = 89.4 bits (221), Expect = 1e-16, Method: Composition-based stats.
Identities = 25/89 (28%), Positives = 44/89 (49%), Gaps = 1/89 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ L + ++ LN ++ + +V EE+ AL G V++ GFG+F +R + R
Sbjct: 6 TKAELADLLFER-VGLNKREAKDMVEGFFEEIRTALERGDSVKLSGFGNFQLRDKPQRPG 64
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P + I + + V F A + LK +
Sbjct: 65 RNPKTGEEIPITARRVVTFHASQKLKAAV 93
>gi|256397147|ref|YP_003118711.1| histone family protein DNA-binding protein [Catenulispora
acidiphila DSM 44928]
gi|256363373|gb|ACU76870.1| histone family protein DNA-binding protein [Catenulispora
acidiphila DSM 44928]
Length = 232
Score = 89.4 bits (221), Expect = 1e-16, Method: Composition-based stats.
Identities = 32/93 (34%), Positives = 51/93 (54%), Gaps = 1/93 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI +A K + +D V+ +L+ + ++A+G +V I GFGSF KR AR
Sbjct: 1 MNKAQLIEAVADKLAA-SKKDAGDAVDAVLDAIIASVASGTKVSITGFGSFEKVKRPART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSP 93
AR P + + V+ P F+AG+ K+ +N
Sbjct: 60 ARNPRTGESVKVKASSAPKFKAGQGFKDMVNGD 92
>gi|328954010|ref|YP_004371344.1| histone family protein DNA-binding protein [Desulfobacca
acetoxidans DSM 11109]
gi|328454334|gb|AEB10163.1| histone family protein DNA-binding protein [Desulfobacca
acetoxidans DSM 11109]
Length = 90
Score = 89.4 bits (221), Expect = 1e-16, Method: Composition-based stats.
Identities = 30/91 (32%), Positives = 47/91 (51%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K LI IA ++ DVE+ +N ++ M L GR+ + GFG+F+V +R R
Sbjct: 1 MTKGELISQIAVA-GQVKKADVERTLNAFIKTMVDILQQQGRISLAGFGTFTVTERRERE 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + I + V F+ GK+LK+ +
Sbjct: 60 GRNPQTGEPIKIAATKVVKFKPGKSLKDTIK 90
>gi|161503552|ref|YP_001570664.1| integration host factor subunit alpha [Salmonella enterica subsp.
arizonae serovar 62:z4,z23:-- str. RSK2980]
gi|189044705|sp|A9MFB7|IHFA_SALAR RecName: Full=Integration host factor subunit alpha;
Short=IHF-alpha
gi|160864899|gb|ABX21522.1| hypothetical protein SARI_01630 [Salmonella enterica subsp.
arizonae serovar 62:z4,z23:--]
Length = 99
Score = 89.4 bits (221), Expect = 1e-16, Method: Composition-based stats.
Identities = 28/91 (30%), Positives = 51/91 (56%), Gaps = 1/91 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ + + K L+ +D +++V + EE+ +AL NG +V++ GFG+F +R + R
Sbjct: 4 TKAEMSEYLFDKL-GLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 62
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P + I + + V FR G+ LK R+ +
Sbjct: 63 RNPKTGEDIPITARRVVTFRPGQKLKSRVEN 93
>gi|194336405|ref|YP_002018199.1| histone family protein DNA-binding protein [Pelodictyon
phaeoclathratiforme BU-1]
gi|194308882|gb|ACF43582.1| histone family protein DNA-binding protein [Pelodictyon
phaeoclathratiforme BU-1]
Length = 91
Score = 89.4 bits (221), Expect = 1e-16, Method: Composition-based stats.
Identities = 28/87 (32%), Positives = 50/87 (57%), Gaps = 1/87 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K++L+ IA + +L+ D ++ + + ++ +L NG V + GFG+F++ RA R
Sbjct: 1 MSKNALVEKIADQ-AQLSKIDADRALKAFVTIVSDSLKNGVDVPLAGFGTFTIVDRAERE 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLK 87
R P+ + I++ K V F+ GK LK
Sbjct: 60 GRNPMTGEAITIAAKKVVKFKPGKALK 86
>gi|238783379|ref|ZP_04627402.1| Integration host factor subunit alpha [Yersinia bercovieri ATCC
43970]
gi|238791696|ref|ZP_04635333.1| Integration host factor subunit alpha [Yersinia intermedia ATCC
29909]
gi|238797375|ref|ZP_04640875.1| Integration host factor subunit alpha [Yersinia mollaretii ATCC
43969]
gi|238715624|gb|EEQ07613.1| Integration host factor subunit alpha [Yersinia bercovieri ATCC
43970]
gi|238718806|gb|EEQ10622.1| Integration host factor subunit alpha [Yersinia mollaretii ATCC
43969]
gi|238728800|gb|EEQ20317.1| Integration host factor subunit alpha [Yersinia intermedia ATCC
29909]
Length = 98
Score = 89.4 bits (221), Expect = 1e-16, Method: Composition-based stats.
Identities = 28/89 (31%), Positives = 50/89 (56%), Gaps = 1/89 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ + + +K L+ +D + +V + EE+ +AL NG +V++ GFG+F +R + R
Sbjct: 4 TKAEMSEHLFEKL-GLSKRDAKDLVELFFEEVRRALENGEQVKLSGFGNFDLRDKNQRPG 62
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P + I + + V FR G+ LK R+
Sbjct: 63 RNPKTGEDIPITARRVVTFRPGQKLKSRV 91
>gi|114332285|ref|YP_748507.1| integration host factor subunit alpha [Nitrosomonas eutropha C91]
gi|122313054|sp|Q0ADP0|IHFA_NITEC RecName: Full=Integration host factor subunit alpha;
Short=IHF-alpha
gi|114309299|gb|ABI60542.1| integration host factor, alpha subunit [Nitrosomonas eutropha
C91]
Length = 102
Score = 89.4 bits (221), Expect = 1e-16, Method: Composition-based stats.
Identities = 29/92 (31%), Positives = 47/92 (51%), Gaps = 1/92 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ L + + N LN ++ ++IV EEM AL NG V++ GFG+F +R + R
Sbjct: 4 TKAELTDLLFE-NIGLNKREAKEIVECFYEEMRTALQNGDGVKLSGFGNFQLRTKPQRPG 62
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLNSP 93
R P + I + + V F A + LK + +
Sbjct: 63 RNPKTGEEIPISARRVVTFHASQKLKSMVEAN 94
>gi|253582214|ref|ZP_04859437.1| predicted protein [Fusobacterium varium ATCC 27725]
gi|251835753|gb|EES64291.1| predicted protein [Fusobacterium varium ATCC 27725]
Length = 92
Score = 89.4 bits (221), Expect = 1e-16, Method: Composition-based stats.
Identities = 32/92 (34%), Positives = 42/92 (45%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K I +K D EK L + + L +G + GFG F V RAAR
Sbjct: 1 MTKKEFIDLYFEKGEFATKIDAEKKAAAFLAVIEEGLVSGEDITFLGFGKFEVADRAART 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P + + VE K V F+AGK L E++N
Sbjct: 61 CRNPQTGEEMEVEAKKVVKFKAGKGLSEKVNQ 92
>gi|228942908|ref|ZP_04105421.1| DNA-binding protein HU 1 [Bacillus thuringiensis serovar berliner
ATCC 10792]
gi|228976135|ref|ZP_04136633.1| DNA-binding protein HU 1 [Bacillus thuringiensis serovar
thuringiensis str. T01001]
gi|228783586|gb|EEM31667.1| DNA-binding protein HU 1 [Bacillus thuringiensis serovar
thuringiensis str. T01001]
gi|228816760|gb|EEM62872.1| DNA-binding protein HU 1 [Bacillus thuringiensis serovar berliner
ATCC 10792]
Length = 93
Score = 89.4 bits (221), Expect = 1e-16, Method: Composition-based stats.
Identities = 33/91 (36%), Positives = 50/91 (54%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ L +A+K +L +D +L +T AL N +V+I GFG+F VR+R+AR
Sbjct: 4 MNKTELTKVVAEK-AELTQKDAAAATQAVLNTITSALTNEEKVQILGFGTFEVRERSART 62
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + + + P F+AGK LKE +
Sbjct: 63 GRNPQTGEEMQIAASKAPAFKAGKELKEAVK 93
>gi|303230302|ref|ZP_07317069.1| DNA-binding protein HU 1 [Veillonella atypica ACS-134-V-Col7a]
gi|302515085|gb|EFL57060.1| DNA-binding protein HU 1 [Veillonella atypica ACS-134-V-Col7a]
Length = 99
Score = 89.4 bits (221), Expect = 1e-16, Method: Composition-based stats.
Identities = 39/96 (40%), Positives = 62/96 (64%), Gaps = 1/96 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI ++A+K +L +D EK V + + + + LA GG+V++ GFG+F VR+RAAR
Sbjct: 1 MNKTELIASVAQKT-ELTKKDAEKAVKAVFDTVAEELAAGGKVQVIGFGTFEVRERAARE 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDST 96
R P K I+++ P F+AGK LKE++N+ +
Sbjct: 60 GRNPQNGKTITIKASKSPAFKAGKGLKEQVNAAPAK 95
>gi|254480378|ref|ZP_05093625.1| DNA-binding protein HU [marine gamma proteobacterium HTCC2148]
gi|214038961|gb|EEB79621.1| DNA-binding protein HU [marine gamma proteobacterium HTCC2148]
Length = 91
Score = 89.4 bits (221), Expect = 1e-16, Method: Composition-based stats.
Identities = 31/92 (33%), Positives = 51/92 (55%), Gaps = 1/92 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ + L+ D + ++ +++ +T AL G +V + GFG+FSV+ R+AR
Sbjct: 1 MNKTE-LIDAIAAAADLSKADAGRALDAVVDSVTDALKKGDQVSLVGFGTFSVKHRSART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P I ++ VP F+AGK LK+ +NS
Sbjct: 60 GRNPQTGAAIEIKASEVPSFKAGKALKDAVNS 91
>gi|253700777|ref|YP_003021966.1| histone family protein DNA-binding protein [Geobacter sp. M21]
gi|251775627|gb|ACT18208.1| histone family protein DNA-binding protein [Geobacter sp. M21]
Length = 91
Score = 89.4 bits (221), Expect = 1e-16, Method: Composition-based stats.
Identities = 41/90 (45%), Positives = 59/90 (65%), Gaps = 1/90 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI ++A K L+++ E++VN + MT AL +G R+EIRGFGSF V++ A
Sbjct: 1 MNKSELIESLAAKKT-LSFKKAEEVVNAVFASMTDALLSGDRIEIRGFGSFVVKEYDAYT 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P + ISV+ K +PFF+ GK LKE++
Sbjct: 60 GRNPKTGESISVKAKKLPFFKVGKELKEKV 89
>gi|14194639|sp|Q9XB22|DBH_STRDO RecName: Full=DNA-binding protein HU
gi|5209330|gb|AAD40809.1|L38959_1 histone-like DNA-binding protein [Streptococcus sobrinus]
Length = 91
Score = 89.4 bits (221), Expect = 1e-16, Method: Composition-based stats.
Identities = 31/90 (34%), Positives = 48/90 (53%), Gaps = 1/90 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K LI +A+ +L +D V+ + + L+ G +V++ GFG+F VR+RAAR
Sbjct: 3 NKQDLIAKVAEAT-ELTKKDSAAAVDTVFSSIEGFLSKGEKVQLIGFGNFEVRERAARKG 61
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P I + VP F+AGK LK+ +
Sbjct: 62 RNPQTGAEIKIAASKVPAFKAGKALKDAVK 91
>gi|149193907|ref|ZP_01871005.1| non-specific DNA-binding protein [Caminibacter mediatlanticus
TB-2]
gi|149135860|gb|EDM24338.1| non-specific DNA-binding protein [Caminibacter mediatlanticus
TB-2]
Length = 102
Score = 89.4 bits (221), Expect = 1e-16, Method: Composition-based stats.
Identities = 39/96 (40%), Positives = 56/96 (58%), Gaps = 1/96 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS L+ +A+K L+ +DV +++ +E + +AL NG +V GFGSF V RA R+
Sbjct: 1 MKKSDLVAAVAEKT-GLSKKDVAAVIDATIETIQEALKNGEKVSFIGFGSFEVVTRAPRV 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDST 96
AR P K I + E F+ GK LKE +NS +T
Sbjct: 60 ARVPGTGKEIKIPETKSVKFKVGKKLKELVNSGKTT 95
>gi|292897978|ref|YP_003537347.1| histone like DNA-binding protein HU-alpha [Erwinia amylovora ATCC
49946]
gi|291197826|emb|CBJ44921.1| histone like DNA-binding protein HU-alpha [Erwinia amylovora ATCC
49946]
Length = 90
Score = 89.4 bits (221), Expect = 1e-16, Method: Composition-based stats.
Identities = 32/91 (35%), Positives = 46/91 (50%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI IA K L+ + + L +T++L G V++ GFG+F V RA R
Sbjct: 1 MNKTQLIDVIADK-ADLSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERT 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P K I + VP F +GK LK+ +
Sbjct: 60 VRNPQTGKEIKIAAANVPAFVSGKALKDAVK 90
>gi|283852806|ref|ZP_06370069.1| histone family protein DNA-binding protein [Desulfovibrio sp.
FW1012B]
gi|283571798|gb|EFC19795.1| histone family protein DNA-binding protein [Desulfovibrio sp.
FW1012B]
Length = 91
Score = 89.4 bits (221), Expect = 1e-16, Method: Composition-based stats.
Identities = 25/91 (27%), Positives = 42/91 (46%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ +I I + K+++ +L + +L +G + + GFG+F V +RAAR
Sbjct: 1 MAKTDIIAKIQANAGIATKAEAGKVLDAVLGAIQDSLVSGEALTLTGFGTFKVSERAART 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P I + F GK LK+ +
Sbjct: 61 GRDPRTGNAIDIPASKAVRFTPGKTLKDAVK 91
>gi|259500655|ref|ZP_05743557.1| DNA-binding protein HU [Lactobacillus iners DSM 13335]
gi|302191344|ref|ZP_07267598.1| DNA-binding protein HU [Lactobacillus iners AB-1]
gi|309804184|ref|ZP_07698262.1| DNA-binding protein HU [Lactobacillus iners LactinV 11V1-d]
gi|309805716|ref|ZP_07699756.1| DNA-binding protein HU [Lactobacillus iners LactinV 09V1-c]
gi|309806743|ref|ZP_07700737.1| DNA-binding protein HU [Lactobacillus iners LactinV 03V1-b]
gi|309809245|ref|ZP_07703114.1| DNA-binding protein HU [Lactobacillus iners SPIN 2503V10-D]
gi|312871445|ref|ZP_07731540.1| DNA-binding protein HU [Lactobacillus iners LEAF 3008A-a]
gi|312872380|ref|ZP_07732450.1| DNA-binding protein HU [Lactobacillus iners LEAF 2062A-h1]
gi|312873981|ref|ZP_07734017.1| DNA-binding protein HU [Lactobacillus iners LEAF 2052A-d]
gi|312875460|ref|ZP_07735463.1| DNA-binding protein HU [Lactobacillus iners LEAF 2053A-b]
gi|315653510|ref|ZP_07906431.1| DNA-binding protein HU [Lactobacillus iners ATCC 55195]
gi|325912002|ref|ZP_08174404.1| DNA-binding protein HU [Lactobacillus iners UPII 143-D]
gi|325912845|ref|ZP_08175223.1| DNA-binding protein HU [Lactobacillus iners UPII 60-B]
gi|329921293|ref|ZP_08277731.1| DNA-binding protein HU [Lactobacillus iners SPIN 1401G]
gi|259168039|gb|EEW52534.1| DNA-binding protein HU [Lactobacillus iners DSM 13335]
gi|308163767|gb|EFO66036.1| DNA-binding protein HU [Lactobacillus iners LactinV 11V1-d]
gi|308164969|gb|EFO67212.1| DNA-binding protein HU [Lactobacillus iners LactinV 09V1-c]
gi|308166858|gb|EFO69043.1| DNA-binding protein HU [Lactobacillus iners LactinV 03V1-b]
gi|308170358|gb|EFO72382.1| DNA-binding protein HU [Lactobacillus iners SPIN 2503V10-D]
gi|311088971|gb|EFQ47412.1| DNA-binding protein HU [Lactobacillus iners LEAF 2053A-b]
gi|311090530|gb|EFQ48938.1| DNA-binding protein HU [Lactobacillus iners LEAF 2052A-d]
gi|311092203|gb|EFQ50577.1| DNA-binding protein HU [Lactobacillus iners LEAF 2062A-h1]
gi|311093098|gb|EFQ51447.1| DNA-binding protein HU [Lactobacillus iners LEAF 3008A-a]
gi|315489201|gb|EFU78842.1| DNA-binding protein HU [Lactobacillus iners ATCC 55195]
gi|325476187|gb|EGC79351.1| DNA-binding protein HU [Lactobacillus iners UPII 143-D]
gi|325477838|gb|EGC80972.1| DNA-binding protein HU [Lactobacillus iners UPII 60-B]
gi|328934585|gb|EGG31089.1| DNA-binding protein HU [Lactobacillus iners SPIN 1401G]
Length = 91
Score = 89.4 bits (221), Expect = 1e-16, Method: Composition-based stats.
Identities = 29/90 (32%), Positives = 49/90 (54%), Gaps = 1/90 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ L+ +A KL+ ++ V+++ + + L+ +V++ GFG+F VR+RAAR
Sbjct: 3 NKADLVSLVASNT-KLSKKEAADAVDLVFNFVKETLSKDEKVQLIGFGTFEVRERAARKG 61
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P I + VP F+ GK LKE +
Sbjct: 62 RNPQTGAEIEIPASKVPAFKPGKALKEAVK 91
>gi|126215724|sp|Q6MMJ0|IHFA_BDEBA RecName: Full=Integration host factor subunit alpha;
Short=IHF-alpha
Length = 110
Score = 89.4 bits (221), Expect = 1e-16, Method: Composition-based stats.
Identities = 25/94 (26%), Positives = 50/94 (53%), Gaps = 1/94 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ ++ + +K + ++ ++V ++ + + L +G +V+I GFG+F VR + R+
Sbjct: 1 MTKADIVENVYQKI-GFSKKEASELVELVFDTLKTVLQDGEKVKISGFGNFVVRGKNERI 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSPD 94
R P + I + + V FR + LK LN +
Sbjct: 60 GRNPQTGEQIKISARRVLTFRPSQVLKAMLNGEE 93
>gi|320352188|ref|YP_004193527.1| histone family protein DNA-binding protein [Desulfobulbus
propionicus DSM 2032]
gi|320120690|gb|ADW16236.1| histone family protein DNA-binding protein [Desulfobulbus
propionicus DSM 2032]
Length = 95
Score = 89.4 bits (221), Expect = 1e-16, Method: Composition-based stats.
Identities = 36/90 (40%), Positives = 55/90 (61%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M+K L+ ++++ QD+ + V ++LEE++QALA RVEIRGFGSFSVR R R
Sbjct: 1 MLKRELVNQVSEQLGDYYKQDIAQAVEIILEEISQALAEERRVEIRGFGSFSVRTRKPRT 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
+ P K++++ + F K+LKE L
Sbjct: 61 TKNPKTGKMMNIPARKTLHFTMSKSLKEVL 90
>gi|218134050|ref|ZP_03462854.1| hypothetical protein BACPEC_01940 [Bacteroides pectinophilus ATCC
43243]
gi|217991425|gb|EEC57431.1| hypothetical protein BACPEC_01940 [Bacteroides pectinophilus ATCC
43243]
Length = 96
Score = 89.4 bits (221), Expect = 1e-16, Method: Composition-based stats.
Identities = 33/96 (34%), Positives = 53/96 (55%), Gaps = 1/96 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ L+ +A+K +L+ +D E + L + + L G +V++ GFG+F V +RAAR
Sbjct: 1 MNKTELVAAMAEK-AELSKKDAEAALKALTATIAEELTKGEKVQLVGFGTFEVSERAART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDST 96
+ P K I + P F+AGK LK+ +NS
Sbjct: 60 GKNPQTGKAIKIPASKAPKFKAGKALKDTVNSTKKK 95
>gi|304391395|ref|ZP_07373337.1| DNA-binding protein HU-alpha [Ahrensia sp. R2A130]
gi|303295624|gb|EFL89982.1| DNA-binding protein HU-alpha [Ahrensia sp. R2A130]
Length = 91
Score = 89.4 bits (221), Expect = 2e-16, Method: Composition-based stats.
Identities = 30/92 (32%), Positives = 46/92 (50%), Gaps = 1/92 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K LI +A K +N + ++ +T AL +G V + GFG+F V +R AR+
Sbjct: 1 MNKQELISAMAGK-ADMNKDQAGAALEAFIDSVTDALKSGEEVRLLGFGNFVVTRREARM 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P + V F+ GK LK+++NS
Sbjct: 60 GRNPQTGAATEIAAANVARFKVGKGLKDKINS 91
>gi|222056441|ref|YP_002538803.1| histone family protein DNA-binding protein [Geobacter sp. FRC-32]
gi|221565730|gb|ACM21702.1| histone family protein DNA-binding protein [Geobacter sp. FRC-32]
Length = 92
Score = 89.4 bits (221), Expect = 2e-16, Method: Composition-based stats.
Identities = 22/92 (23%), Positives = 50/92 (54%), Gaps = 1/92 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ ++ I +K + ++ ++V + + + L G +++I GFG+F V+++A R
Sbjct: 1 MTKADIVERIYEK-VGFSKKESAELVETVFDLIKSTLEEGDKIKIAGFGNFVVKEKADRR 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P + I++ + + F+ + LK +N+
Sbjct: 60 GRNPQTGEEITISARKILTFKPSQVLKAAINN 91
>gi|325288078|ref|YP_004263868.1| histone family protein DNA-binding protein [Cellulophaga lytica
DSM 7489]
gi|324323532|gb|ADY30997.1| histone family protein DNA-binding protein [Cellulophaga lytica
DSM 7489]
Length = 90
Score = 89.4 bits (221), Expect = 2e-16, Method: Composition-based stats.
Identities = 31/91 (34%), Positives = 45/91 (49%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI +A + + +K + L + +L G RV + GFGS+SV +R AR
Sbjct: 1 MNKTELIDAMAA-DAGITKAAAKKALESFLGNVEGSLKKGDRVSLVGFGSWSVTRREARD 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P K I + K V F+AG L +N
Sbjct: 60 GRNPQTGKTIKIAAKNVVKFKAGTELSNSVN 90
>gi|257469517|ref|ZP_05633609.1| DNA-binding protein HU [Fusobacterium ulcerans ATCC 49185]
gi|317063761|ref|ZP_07928246.1| predicted protein [Fusobacterium ulcerans ATCC 49185]
gi|313689437|gb|EFS26272.1| predicted protein [Fusobacterium ulcerans ATCC 49185]
Length = 92
Score = 89.4 bits (221), Expect = 2e-16, Method: Composition-based stats.
Identities = 32/92 (34%), Positives = 41/92 (44%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K I +K D EK L + + L G + GFG F V RAAR
Sbjct: 1 MTKKEFIDLYFEKGEFATKIDAEKKAAAFLAVIEEGLVGGEDITFLGFGKFEVADRAART 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P + + VE K V F+AGK L E++N
Sbjct: 61 CRNPQTGEEMEVEAKKVVKFKAGKGLSEKVNQ 92
>gi|85059402|ref|YP_455104.1| integration host factor subunit alpha [Sodalis glossinidius str.
'morsitans']
gi|123725404|sp|Q2NT26|IHFA_SODGM RecName: Full=Integration host factor subunit alpha;
Short=IHF-alpha
gi|84779922|dbj|BAE74699.1| integration host factor alpha subunit [Sodalis glossinidius str.
'morsitans']
Length = 98
Score = 89.4 bits (221), Expect = 2e-16, Method: Composition-based stats.
Identities = 29/95 (30%), Positives = 52/95 (54%), Gaps = 1/95 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ + + +K L+ +D ++IV + EE+ +AL NG +V++ GFG+F +R + R
Sbjct: 4 TKAEMSEYLFEKL-GLSKRDAKEIVELFFEEVRRALENGEQVKLSGFGNFDLRDKNQRPG 62
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDST 96
R P + I + + V FR G+ LK R+ +
Sbjct: 63 RNPKTGEDIPITARRVVTFRPGQKLKSRVENASPK 97
>gi|239905786|ref|YP_002952525.1| HU_IHF family transcriptional regulator [Desulfovibrio magneticus
RS-1]
gi|239795650|dbj|BAH74639.1| HU_IHF family transcriptional regulator [Desulfovibrio magneticus
RS-1]
Length = 91
Score = 89.4 bits (221), Expect = 2e-16, Method: Composition-based stats.
Identities = 25/91 (27%), Positives = 42/91 (46%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ +I I + K+++ +L + ++L G + + GFG+F V +RAAR
Sbjct: 1 MAKTDIIAKIQANAGIATKAEAGKVLDAVLGAIQESLVGGEALTLTGFGTFKVSERAART 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P I + F GK LK+ +
Sbjct: 61 GRDPRTGNPIDIPASKAVRFTPGKTLKDAVK 91
>gi|17546302|ref|NP_519704.1| integration host factor subunit alpha [Ralstonia solanacearum
GMI1000]
gi|21362602|sp|Q8XZ23|IHFA_RALSO RecName: Full=Integration host factor subunit alpha;
Short=IHF-alpha
gi|17428599|emb|CAD15285.1| probable integration host factor alpha-subunit (ihf-alpha)
protein [Ralstonia solanacearum GMI1000]
Length = 104
Score = 89.4 bits (221), Expect = 2e-16, Method: Composition-based stats.
Identities = 23/89 (25%), Positives = 45/89 (50%), Gaps = 1/89 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ L + ++ LN ++ + +V + + +AL G V++ GFG+F +R + R
Sbjct: 5 TKAELAEMLFEQ-VGLNKRESKDMVEAFFDVIREALEQGDSVKLSGFGNFQLRDKPQRPG 63
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P ++I + + V F A + LK +
Sbjct: 64 RNPKTGEIIPITARRVVTFHASQKLKALV 92
>gi|257066457|ref|YP_003152713.1| histone family protein DNA-binding protein [Anaerococcus prevotii
DSM 20548]
gi|256798337|gb|ACV28992.1| histone family protein DNA-binding protein [Anaerococcus prevotii
DSM 20548]
Length = 92
Score = 89.4 bits (221), Expect = 2e-16, Method: Composition-based stats.
Identities = 37/93 (39%), Positives = 54/93 (58%), Gaps = 2/93 (2%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS L+ I++K+ L + EK +N LE +T++L G +V++ GFG+F VR R AR
Sbjct: 1 MNKSELLINISEKS-GLKKSEAEKALNAFLETVTESLVEGDKVQLVGFGTFEVRDRKARE 59
Query: 61 ARAPLAQKV-ISVEEKMVPFFRAGKNLKERLNS 92
R P + I + P F+AGK LKE +N
Sbjct: 60 GRNPRKPEEVIQIPASKAPVFKAGKTLKEAVNK 92
>gi|160942315|ref|ZP_02089624.1| hypothetical protein CLOBOL_07201 [Clostridium bolteae ATCC
BAA-613]
gi|158434872|gb|EDP12639.1| hypothetical protein CLOBOL_07201 [Clostridium bolteae ATCC
BAA-613]
Length = 92
Score = 89.4 bits (221), Expect = 2e-16, Method: Composition-based stats.
Identities = 33/92 (35%), Positives = 52/92 (56%), Gaps = 1/92 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K L+ ++ L + EK +N L++ + L++GG V + GFG FSV R AR+
Sbjct: 1 MNKRQLVDRMS-SGSGLTMKQSEKALNGLMDVIHSELSSGGNVSLIGFGVFSVADRKARM 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
AR P + + V+ + +P F+AG LK +NS
Sbjct: 60 ARNPKTGEEMEVKARKIPVFKAGSTLKRAVNS 91
>gi|303236678|ref|ZP_07323259.1| DNA-binding protein HU [Prevotella disiens FB035-09AN]
gi|302483182|gb|EFL46196.1| DNA-binding protein HU [Prevotella disiens FB035-09AN]
Length = 91
Score = 89.4 bits (221), Expect = 2e-16, Method: Composition-based stats.
Identities = 28/92 (30%), Positives = 48/92 (52%), Gaps = 1/92 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI IA L+ D +K ++ + +AL G +V++ GFG++SV +R A
Sbjct: 1 MNKTELIEKIAA-GAGLSKVDAKKALDATTAAIKEALVAGDKVQLVGFGTYSVTERPAHE 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
P ++ I + K V F+ G L + +N+
Sbjct: 60 GINPATKEKIQIAAKKVAKFKPGAELADAVNA 91
>gi|291287622|ref|YP_003504438.1| histone family protein DNA-binding protein [Denitrovibrio
acetiphilus DSM 12809]
gi|290884782|gb|ADD68482.1| histone family protein DNA-binding protein [Denitrovibrio
acetiphilus DSM 12809]
Length = 90
Score = 89.4 bits (221), Expect = 2e-16, Method: Composition-based stats.
Identities = 30/91 (32%), Positives = 43/91 (47%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K LI IA+ L D EK + + AL +V + GFG+FSV +R R
Sbjct: 1 MNKKELIEKIAE-MAGLKKSDAEKALKAFEDATVAALKADDKVTLVGFGTFSVSERKERK 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P +++ K VP F GK K+ ++
Sbjct: 60 GRNPQTGAEMTIPAKKVPKFTPGKLFKDSID 90
>gi|312969741|ref|ZP_07783924.1| integration host factor, alpha subunit [Escherichia coli 1827-70]
gi|310338026|gb|EFQ03115.1| integration host factor, alpha subunit [Escherichia coli 1827-70]
Length = 99
Score = 89.4 bits (221), Expect = 2e-16, Method: Composition-based stats.
Identities = 28/95 (29%), Positives = 51/95 (53%), Gaps = 1/95 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ + + K L+ +D +++V + EE+ +AL NG +V++ GFG+F +R + R
Sbjct: 4 TKAEMSEYLFDKL-GLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 62
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDST 96
R P + I + + V FR G+ LK R+ +
Sbjct: 63 RNPKTGEDIPITARRVVTFRPGQKLKSRVENASPK 97
>gi|316934097|ref|YP_004109079.1| integration host factor subunit alpha [Rhodopseudomonas palustris
DX-1]
gi|315601811|gb|ADU44346.1| integration host factor, alpha subunit [Rhodopseudomonas palustris
DX-1]
Length = 118
Score = 89.4 bits (221), Expect = 2e-16, Method: Composition-based stats.
Identities = 25/99 (25%), Positives = 50/99 (50%), Gaps = 1/99 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
+ L + +K L+ + V ++L+E+T L G V++ FGSF VR++ R+
Sbjct: 7 TRVDLCEAVYQK-VGLSRTESSAFVELVLKEITDCLERGETVKLSSFGSFLVRQKGERVG 65
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDSTLSNS 100
R P + + + V F+ LK+R+N+ + +++
Sbjct: 66 RNPKTGTEVPISPRRVMVFKPSAILKQRINANGAVPAST 104
>gi|188533971|ref|YP_001907768.1| integration host factor subunit alpha [Erwinia tasmaniensis
Et1/99]
gi|292488135|ref|YP_003531012.1| integration host factor subunit alpha [Erwinia amylovora
CFBP1430]
gi|292899346|ref|YP_003538715.1| integration host factor alpha-subunit [Erwinia amylovora ATCC
49946]
gi|300716465|ref|YP_003741268.1| Integration host factor alpha-subunit (IHF-alpha) [Erwinia
billingiae Eb661]
gi|226709728|sp|B2VEL2|IHFA_ERWT9 RecName: Full=Integration host factor subunit alpha;
Short=IHF-alpha
gi|188029013|emb|CAO96881.1| Integration host factor alpha-subunit (IHF-alpha) [Erwinia
tasmaniensis Et1/99]
gi|291199194|emb|CBJ46308.1| integration host factor alpha-subunit [Erwinia amylovora ATCC
49946]
gi|291553559|emb|CBA20604.1| Integration host factor subunit alpha (IHF-alpha) [Erwinia
amylovora CFBP1430]
gi|299062301|emb|CAX59418.1| Integration host factor alpha-subunit (IHF-alpha) [Erwinia
billingiae Eb661]
gi|312172267|emb|CBX80524.1| Integration host factor subunit alpha (IHF-alpha) [Erwinia
amylovora ATCC BAA-2158]
Length = 99
Score = 89.4 bits (221), Expect = 2e-16, Method: Composition-based stats.
Identities = 28/95 (29%), Positives = 52/95 (54%), Gaps = 1/95 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ + + +K L+ +D +++V + EE+ +AL NG +V++ GFG+F +R + R
Sbjct: 4 TKAEMSEYLFEKL-GLSKRDAKELVELFFEEVRRALENGEQVKLSGFGNFDLRDKNQRPG 62
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDST 96
R P + I + + V FR G+ LK R+ +
Sbjct: 63 RNPKTGEDIPITARRVVTFRPGQKLKSRVENATPK 97
>gi|150003567|ref|YP_001298311.1| DNA-binding protein HU-beta [Bacteroides vulgatus ATCC 8482]
gi|254881205|ref|ZP_05253915.1| DNA-binding protein HU-beta [Bacteroides sp. 4_3_47FAA]
gi|294777624|ref|ZP_06743075.1| DNA-binding protein HU [Bacteroides vulgatus PC510]
gi|319640215|ref|ZP_07994941.1| DNA-binding protein HU-beta [Bacteroides sp. 3_1_40A]
gi|149931991|gb|ABR38689.1| DNA-binding protein HU-beta [Bacteroides vulgatus ATCC 8482]
gi|254833998|gb|EET14307.1| DNA-binding protein HU-beta [Bacteroides sp. 4_3_47FAA]
gi|294448692|gb|EFG17241.1| DNA-binding protein HU [Bacteroides vulgatus PC510]
gi|317388202|gb|EFV69055.1| DNA-binding protein HU-beta [Bacteroides sp. 3_1_40A]
Length = 90
Score = 89.4 bits (221), Expect = 2e-16, Method: Composition-based stats.
Identities = 30/91 (32%), Positives = 49/91 (53%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI +A + L+ D +K V + +T+AL G +V + GFG+FSV +R+AR
Sbjct: 1 MNKADLISAVAAE-AGLSKVDAKKAVEAFVSTVTKALQEGDKVSLIGFGTFSVAERSART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
P + I++ K V F+ G L + +
Sbjct: 60 GINPSTKATITIPAKKVTKFKPGAELADAIK 90
>gi|86157913|ref|YP_464698.1| histone-like DNA-binding protein [Anaeromyxobacter dehalogenans
2CP-C]
gi|197122784|ref|YP_002134735.1| histone family protein DNA-binding protein [Anaeromyxobacter sp.
K]
gi|220917567|ref|YP_002492871.1| histone family protein DNA-binding protein [Anaeromyxobacter
dehalogenans 2CP-1]
gi|85774424|gb|ABC81261.1| Histone-like DNA-binding protein [Anaeromyxobacter dehalogenans
2CP-C]
gi|196172633|gb|ACG73606.1| histone family protein DNA-binding protein [Anaeromyxobacter sp.
K]
gi|219955421|gb|ACL65805.1| histone family protein DNA-binding protein [Anaeromyxobacter
dehalogenans 2CP-1]
Length = 90
Score = 89.1 bits (220), Expect = 2e-16, Method: Composition-based stats.
Identities = 24/90 (26%), Positives = 43/90 (47%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI + + L+ + V +V+ + E + + + R + GFG+F V++RA R+
Sbjct: 1 MTKADLIEKVQALHDDLSKRQVALLVDSVFEHLAKGIRKDKRFTMPGFGTFVVKRRAGRV 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P I + F+ LK+ L
Sbjct: 61 GRNPQTGAEIQIAPTKTVGFKPAPELKKAL 90
>gi|283780883|ref|YP_003371638.1| histone family protein DNA-binding protein [Pirellula staleyi DSM
6068]
gi|283439336|gb|ADB17778.1| histone family protein DNA-binding protein [Pirellula staleyi DSM
6068]
Length = 180
Score = 89.1 bits (220), Expect = 2e-16, Method: Composition-based stats.
Identities = 29/89 (32%), Positives = 50/89 (56%), Gaps = 1/89 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K ++ TI+++ L ++IV + + + L R+E+R FG F V++RAAR A
Sbjct: 58 TKKEIVKTISEEI-GLTQLKTKEIVQKTFDAIVETLVEERRIELRNFGVFEVKERAARKA 116
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P + + V EK V F+ GK ++E++
Sbjct: 117 RNPRTGQPVYVAEKFVVTFKPGKEMEEKV 145
>gi|157370390|ref|YP_001478379.1| integration host factor subunit alpha [Serratia proteamaculans
568]
gi|270261563|ref|ZP_06189836.1| integration host factor, alpha subunit [Serratia odorifera 4Rx13]
gi|293396364|ref|ZP_06640642.1| integration host factor subunit alpha [Serratia odorifera DSM
4582]
gi|166918522|sp|A8GDR1|IHFA_SERP5 RecName: Full=Integration host factor subunit alpha;
Short=IHF-alpha
gi|157322154|gb|ABV41251.1| integration host factor, alpha subunit [Serratia proteamaculans
568]
gi|270045047|gb|EFA18138.1| integration host factor, alpha subunit [Serratia odorifera 4Rx13]
gi|291421153|gb|EFE94404.1| integration host factor subunit alpha [Serratia odorifera DSM
4582]
Length = 98
Score = 89.1 bits (220), Expect = 2e-16, Method: Composition-based stats.
Identities = 28/95 (29%), Positives = 51/95 (53%), Gaps = 1/95 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ + + +K L+ +D + +V + EE+ +AL NG +V++ GFG+F +R + R
Sbjct: 4 TKAEMSEHLFEKL-GLSKRDAKDLVELFFEEVRRALENGEQVKLSGFGNFDLRDKNQRPG 62
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDST 96
R P + I + + V FR G+ LK R+ +
Sbjct: 63 RNPKTGEDIPITARRVVTFRPGQKLKSRVENASPK 97
>gi|94971730|ref|YP_593778.1| histone-like DNA-binding protein [Candidatus Koribacter
versatilis Ellin345]
gi|94553780|gb|ABF43704.1| histone-like DNA-binding protein [Candidatus Koribacter
versatilis Ellin345]
Length = 93
Score = 89.1 bits (220), Expect = 2e-16, Method: Composition-based stats.
Identities = 29/94 (30%), Positives = 49/94 (52%), Gaps = 1/94 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ L+ IA + ++ + ++ L++ +T +L G RV + GFG+F+V +R AR
Sbjct: 1 MNKADLVDKIAAAS-GISKTSASEAIDALVDGVTTSLKKGERVTLVGFGTFAVSQRRARN 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSPD 94
R P VI + + V F G LK+ +N
Sbjct: 60 GRNPQTGSVIKIAARKVAKFTPGVELKKAVNKSK 93
>gi|238753681|ref|ZP_04615043.1| Integration host factor subunit alpha [Yersinia ruckeri ATCC
29473]
gi|238708233|gb|EEQ00589.1| Integration host factor subunit alpha [Yersinia ruckeri ATCC
29473]
Length = 98
Score = 89.1 bits (220), Expect = 2e-16, Method: Composition-based stats.
Identities = 28/95 (29%), Positives = 51/95 (53%), Gaps = 1/95 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ + + +K L+ +D + +V + EE+ +AL NG +V++ GFG+F +R + R
Sbjct: 4 TKAEMSEHLFEKL-GLSKRDAKDLVELFFEEVRRALENGEQVKLSGFGNFDLRDKNQRPG 62
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDST 96
R P + I + + V FR G+ LK R+ +
Sbjct: 63 RNPKTGEDIPITARRVVTFRPGQKLKSRVENATPK 97
>gi|319954832|ref|YP_004166099.1| histone family protein DNA-binding protein [Cellulophaga algicola
DSM 14237]
gi|319423492|gb|ADV50601.1| histone family protein DNA-binding protein [Cellulophaga algicola
DSM 14237]
Length = 90
Score = 89.1 bits (220), Expect = 2e-16, Method: Composition-based stats.
Identities = 31/91 (34%), Positives = 45/91 (49%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI +A + + +K + L + +L G RV + GFGS+SV KR AR
Sbjct: 1 MNKTELIDAMAA-DAGITKAAAKKALESFLGNVEGSLKKGDRVSLVGFGSWSVSKREARD 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P I + K V F+AG L + +N
Sbjct: 60 GRNPQTGATIKIAAKNVVKFKAGAELAKAVN 90
>gi|149911448|ref|ZP_01900065.1| DNA-binding protein HU-alpha [Moritella sp. PE36]
gi|149805479|gb|EDM65486.1| DNA-binding protein HU-alpha [Moritella sp. PE36]
Length = 94
Score = 89.1 bits (220), Expect = 2e-16, Method: Composition-based stats.
Identities = 29/95 (30%), Positives = 50/95 (52%), Gaps = 1/95 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI +A K L + + +L +T++L V++ GFG+F V +R+AR+
Sbjct: 1 MNKTQLIDAVAAK-ADLTKVQAKAALEEILSAITESLKEKEAVQLIGFGTFKVSERSARI 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDS 95
R P + I + +P F AGK LK+ + + +
Sbjct: 60 GRNPQTGEEIQISAATIPAFVAGKALKDAVKNANK 94
>gi|153212317|ref|ZP_01948105.1| integration host factor, alpha subunit [Vibrio cholerae 1587]
gi|258620238|ref|ZP_05715277.1| integration host factor, alpha subunit [Vibrio mimicus VM573]
gi|258624402|ref|ZP_05719349.1| integration host factor, alpha subunit [Vibrio mimicus VM603]
gi|262171747|ref|ZP_06039425.1| integration host factor alpha subunit [Vibrio mimicus MB-451]
gi|124116695|gb|EAY35515.1| integration host factor, alpha subunit [Vibrio cholerae 1587]
gi|258583249|gb|EEW08051.1| integration host factor, alpha subunit [Vibrio mimicus VM603]
gi|258587596|gb|EEW12306.1| integration host factor, alpha subunit [Vibrio mimicus VM573]
gi|261892823|gb|EEY38809.1| integration host factor alpha subunit [Vibrio mimicus MB-451]
Length = 98
Score = 89.1 bits (220), Expect = 2e-16, Method: Composition-based stats.
Identities = 27/93 (29%), Positives = 50/93 (53%), Gaps = 1/93 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ L + +K ++ +D + V + EE+ +AL +G +V++ GFG+F +R + R
Sbjct: 4 TKAELAEALFEKL-GMSKRDAKDTVEVFFEEIRKALESGEQVKLSGFGNFDLRDKNERPG 62
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLNSPD 94
R P + I + + V FR G+ LK R+ +
Sbjct: 63 RNPKTGEDIPITARRVVTFRPGQKLKARVENIK 95
>gi|198284326|ref|YP_002220647.1| integration host factor subunit alpha [Acidithiobacillus
ferrooxidans ATCC 53993]
gi|218668129|ref|YP_002426987.1| integration host factor, alpha subunit [Acidithiobacillus
ferrooxidans ATCC 23270]
gi|198248847|gb|ACH84440.1| integration host factor, alpha subunit [Acidithiobacillus
ferrooxidans ATCC 53993]
gi|218520342|gb|ACK80928.1| integration host factor, alpha subunit [Acidithiobacillus
ferrooxidans ATCC 23270]
Length = 99
Score = 89.1 bits (220), Expect = 2e-16, Method: Composition-based stats.
Identities = 24/93 (25%), Positives = 48/93 (51%), Gaps = 1/93 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ ++ + + + LN ++ + IV L + + + LA G V++ GFG+F++R + R
Sbjct: 4 TKAEIVDMLFE-SMGLNKREAKGIVEALFDGIRENLAKGEEVKLSGFGNFTLRDKNPRPG 62
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLNSPD 94
R P I++ + V F + LK +N +
Sbjct: 63 RNPKTGVEITITARRVVTFHPSQKLKAYVNGSE 95
>gi|66048251|ref|YP_238092.1| histone-like DNA-binding protein [Pseudomonas syringae pv.
syringae B728a]
gi|63258958|gb|AAY40054.1| Histone-like bacterial DNA-binding protein [Pseudomonas syringae
pv. syringae B728a]
Length = 91
Score = 89.1 bits (220), Expect = 2e-16, Method: Composition-based stats.
Identities = 29/91 (31%), Positives = 47/91 (51%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K + IA+K L + +++N +LEE+T AL V + GFG+F R R AR
Sbjct: 1 MRKPDVAAAIAEK-ADLTKEQSNRVLNAILEEITGALNRKDSVTLVGFGTFLQRHRGART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
+ P + + ++ F+ GK LK+ +N
Sbjct: 60 GKNPQTGEPVKIKASNTVAFKPGKALKDSVN 90
>gi|193213379|ref|YP_001999332.1| histone family protein DNA-binding protein [Chlorobaculum parvum
NCIB 8327]
gi|193086856|gb|ACF12132.1| histone family protein DNA-binding protein [Chlorobaculum parvum
NCIB 8327]
Length = 100
Score = 89.1 bits (220), Expect = 2e-16, Method: Composition-based stats.
Identities = 32/89 (35%), Positives = 50/89 (56%), Gaps = 1/89 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ L+ IA++ L + E +V+ L E + +L G R+EIRGFGSF++R + R A
Sbjct: 6 TKADLVNVIAQRT-GLTKHETESVVDCLFESIIDSLKAGKRIEIRGFGSFNIRYKNLRQA 64
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P + ++V K VP F+ K K +
Sbjct: 65 RNPRTGEKVTVGPKNVPTFKISKEFKHAV 93
>gi|158340425|ref|YP_001521781.1| DNA-binding protein HU [Acaryochloris marina MBIC11017]
gi|158310666|gb|ABW32280.1| DNA-binding protein HU [Acaryochloris marina MBIC11017]
Length = 91
Score = 89.1 bits (220), Expect = 2e-16, Method: Composition-based stats.
Identities = 27/91 (29%), Positives = 46/91 (50%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K L+ IA+ + + + ++ +E + A+++G +V + GFGSF R R AR
Sbjct: 1 MNKGELVDAIAENT-GVTKKQADTTLSATIETIVDAVSSGEKVTLVGFGSFEARDRKARE 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + ++ P F AGK KE++
Sbjct: 60 GRNPKTGEKMTTPASKAPVFSAGKLFKEKVK 90
>gi|117924544|ref|YP_865161.1| histone family protein DNA-binding protein [Magnetococcus sp.
MC-1]
gi|117608300|gb|ABK43755.1| histone family protein DNA-binding protein [Magnetococcus sp.
MC-1]
Length = 91
Score = 89.1 bits (220), Expect = 2e-16, Method: Composition-based stats.
Identities = 36/91 (39%), Positives = 54/91 (59%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI TIA + L Q +V+++ E+ +ALA G RVE+RGFG F R R R
Sbjct: 1 MTKSELILTIAAQ-KGLTKQYAAMVVDLVFSELGKALAKGERVELRGFGVFEPRARKPRA 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
AR P + ++VE K F+ G ++++R++
Sbjct: 60 ARNPKTGEKVAVESKTAVHFKPGLDMRKRVD 90
>gi|302878113|ref|YP_003846677.1| histone family protein DNA-binding protein [Gallionella
capsiferriformans ES-2]
gi|302580902|gb|ADL54913.1| histone family protein DNA-binding protein [Gallionella
capsiferriformans ES-2]
Length = 93
Score = 89.1 bits (220), Expect = 2e-16, Method: Composition-based stats.
Identities = 29/94 (30%), Positives = 45/94 (47%), Gaps = 1/94 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M + LI +A K + E+ + +E +T+ LA G + + GFG+F VR+RAAR
Sbjct: 1 MNRKELIDALAAKT-GSTKTEAERNIAAFIEVVTETLAAGDDIALVGFGTFEVRERAART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSPD 94
R P + + F+AG LK +N
Sbjct: 60 GRNPATGAELKIAASKQAAFKAGATLKAAVNGSK 93
>gi|94265743|ref|ZP_01289479.1| Histone-like bacterial DNA-binding protein [delta proteobacterium
MLMS-1]
gi|94271834|ref|ZP_01292021.1| Histone-like bacterial DNA-binding protein [delta proteobacterium
MLMS-1]
gi|93450327|gb|EAT01564.1| Histone-like bacterial DNA-binding protein [delta proteobacterium
MLMS-1]
gi|93453718|gb|EAT04096.1| Histone-like bacterial DNA-binding protein [delta proteobacterium
MLMS-1]
Length = 94
Score = 89.1 bits (220), Expect = 2e-16, Method: Composition-based stats.
Identities = 24/92 (26%), Positives = 49/92 (53%), Gaps = 1/92 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ L+ I +++ L+ ++ +V+ L+ L G + + GFG F+VR++ AR
Sbjct: 4 TKAELVRRIHQQH-DLSREEAVAVVDNFLDIAKDTLGRGEDLLLSGFGKFNVRQKKARRG 62
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLNSP 93
R P + +++ + V F+A L++R+N
Sbjct: 63 RNPQTGEELTLSPRKVITFKASGILRQRINGD 94
>gi|148259931|ref|YP_001234058.1| histone family protein DNA-binding protein [Acidiphilium cryptum
JF-5]
gi|326403115|ref|YP_004283196.1| histone-like DNA-binding protein [Acidiphilium multivorum AIU301]
gi|146401612|gb|ABQ30139.1| histone family protein DNA-binding protein [Acidiphilium cryptum
JF-5]
gi|325049976|dbj|BAJ80314.1| histone-like DNA-binding protein [Acidiphilium multivorum AIU301]
Length = 87
Score = 89.1 bits (220), Expect = 2e-16, Method: Composition-based stats.
Identities = 23/87 (26%), Positives = 42/87 (48%), Gaps = 1/87 (1%)
Query: 5 SLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLARAP 64
L+ +A+K L+ ++V+ + + +AL V + GFG+F +R A R P
Sbjct: 2 DLVADVAEKT-DLSKAKATEVVDAVFAAIEEALKRKEEVRLVGFGTFGTAERKAATGRNP 60
Query: 65 LAQKVISVEEKMVPFFRAGKNLKERLN 91
+ I + F+ GK+LK+ +N
Sbjct: 61 RTGEEIQIAASTSVRFKPGKSLKDAVN 87
>gi|225010796|ref|ZP_03701264.1| histone family protein DNA-binding protein [Flavobacteria
bacterium MS024-3C]
gi|225005004|gb|EEG42958.1| histone family protein DNA-binding protein [Flavobacteria
bacterium MS024-3C]
Length = 90
Score = 89.1 bits (220), Expect = 2e-16, Method: Composition-based stats.
Identities = 31/91 (34%), Positives = 46/91 (50%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI +A + + +K + L + +L GGRV + GFGS+SV +R AR
Sbjct: 1 MNKTELIDAMAA-DAGITKAAAKKALESFLGNVEGSLKKGGRVSLVGFGSWSVSRRNARD 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P I + K V F+AG L + +N
Sbjct: 60 GRNPQTGATIKIAAKNVVKFKAGAELSKSVN 90
>gi|189424909|ref|YP_001952086.1| histone family protein DNA-binding protein [Geobacter lovleyi SZ]
gi|189421168|gb|ACD95566.1| histone family protein DNA-binding protein [Geobacter lovleyi SZ]
Length = 93
Score = 89.1 bits (220), Expect = 2e-16, Method: Composition-based stats.
Identities = 38/90 (42%), Positives = 58/90 (64%), Gaps = 1/90 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI T A + +++++ E++VNM+ M++A+ G R+EIRG GSF V++ A
Sbjct: 1 MNKSELIETFALQR-EISHKRAEEVVNMIFNSMSEAMTAGERIEIRGLGSFVVKEYGAYT 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P + I V+ K +PFF+ GK LKER+
Sbjct: 60 GRNPKTGEPIEVKPKKLPFFKVGKELKERI 89
>gi|317153197|ref|YP_004121245.1| histone family protein DNA-binding protein [Desulfovibrio
aespoeensis Aspo-2]
gi|316943448|gb|ADU62499.1| histone family protein DNA-binding protein [Desulfovibrio
aespoeensis Aspo-2]
Length = 91
Score = 89.1 bits (220), Expect = 2e-16, Method: Composition-based stats.
Identities = 36/91 (39%), Positives = 53/91 (58%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI ++++ K++ + K+V ++ + +AL G RVEIRGFGSF ++
Sbjct: 1 MNKSELIKALSEQ-KKMHVDEATKVVGAFVDSVKEALLRGDRVEIRGFGSFKIKDYEGYT 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P V+ V K +PFFR GK LKE +N
Sbjct: 60 GRNPKTGSVVQVRSKKLPFFRPGKELKEFIN 90
>gi|126173989|ref|YP_001050138.1| histone family protein DNA-binding protein [Shewanella baltica
OS155]
gi|153000280|ref|YP_001365961.1| histone family protein DNA-binding protein [Shewanella baltica
OS185]
gi|160874914|ref|YP_001554230.1| histone family protein DNA-binding protein [Shewanella baltica
OS195]
gi|125997194|gb|ABN61269.1| histone family protein DNA-binding protein [Shewanella baltica
OS155]
gi|151364898|gb|ABS07898.1| histone family protein DNA-binding protein [Shewanella baltica
OS185]
gi|160860436|gb|ABX48970.1| histone family protein DNA-binding protein [Shewanella baltica
OS195]
gi|315267151|gb|ADT94004.1| histone family protein DNA-binding protein [Shewanella baltica
OS678]
Length = 91
Score = 89.1 bits (220), Expect = 2e-16, Method: Composition-based stats.
Identities = 25/91 (27%), Positives = 48/91 (52%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI IA + + + +V +L+++ AL+ G ++ + FG+F +R A+
Sbjct: 1 MNKAQLIQRIAAEL-NASQASTKPVVEQILQQIHVALSEGEKIFLPQFGTFELRYHVAKT 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + I ++ P F+A LK+++N
Sbjct: 60 GRNPQTGEAIEIDGYNQPSFKASTALKQQIN 90
>gi|187777484|ref|ZP_02993957.1| hypothetical protein CLOSPO_01052 [Clostridium sporogenes ATCC
15579]
gi|187774412|gb|EDU38214.1| hypothetical protein CLOSPO_01052 [Clostridium sporogenes ATCC
15579]
Length = 109
Score = 89.1 bits (220), Expect = 2e-16, Method: Composition-based stats.
Identities = 35/92 (38%), Positives = 58/92 (63%), Gaps = 1/92 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
KS LI ++A+K+ KL +D E + +E + +AL G +V++ GFG+F R+RA R+
Sbjct: 19 NKSELITSMAEKS-KLTKKDAEAALKSFIESVEEALEGGEKVQLVGFGTFETRERAERVG 77
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLNSP 93
R P ++ I++ + P F+AGK LKE++N
Sbjct: 78 RNPRTKEEITIPASIAPVFKAGKELKEKVNKK 109
>gi|149927320|ref|ZP_01915576.1| DNA-binding protein Hu-beta [Limnobacter sp. MED105]
gi|149824034|gb|EDM83257.1| DNA-binding protein Hu-beta [Limnobacter sp. MED105]
Length = 98
Score = 89.1 bits (220), Expect = 2e-16, Method: Composition-based stats.
Identities = 30/99 (30%), Positives = 54/99 (54%), Gaps = 1/99 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI IA K+ + + K+++ ++ ++Q +A+G +V + GFG+F RAAR
Sbjct: 1 MNKTELIDAIATKS-ECSKAAAGKMLDAFIDTVSQQMADGDKVVLVGFGTFQTGARAARE 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDSTLSN 99
R P + I + +VP F G+ LK ++N+ +
Sbjct: 60 GRNPRTGETIKIAAAVVPKFTPGQGLKTKVNTKPAKKKK 98
>gi|239617732|ref|YP_002941054.1| histone family protein DNA-binding protein [Kosmotoga olearia TBF
19.5.1]
gi|239506563|gb|ACR80050.1| histone family protein DNA-binding protein [Kosmotoga olearia TBF
19.5.1]
Length = 90
Score = 89.1 bits (220), Expect = 2e-16, Method: Composition-based stats.
Identities = 30/91 (32%), Positives = 50/91 (54%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K L+ IA++ + +D KI++ +++ + + LA G V + GFG+FSV KR R
Sbjct: 1 MNKKELVAAIAERT-HMTKKDAGKILDAIIDIIEEKLAGGEVVRLVGFGTFSVVKRKPRK 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
P ++ I + VP F GK LK+++
Sbjct: 60 GVNPRTKEPIKIPGGKVPKFIPGKELKDKVK 90
>gi|28872577|ref|NP_795196.1| DNA-binding protein HU family [Pseudomonas syringae pv. tomato str.
DC3000]
gi|28855832|gb|AAO58891.1| DNA-binding protein HU family [Pseudomonas syringae pv. tomato str.
DC3000]
Length = 111
Score = 89.1 bits (220), Expect = 2e-16, Method: Composition-based stats.
Identities = 29/91 (31%), Positives = 47/91 (51%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K + IA+K L + +++N +LEE+T AL V + GFG+F R R AR
Sbjct: 21 MRKPDVAAAIAEK-ADLTKEQSNRVLNAILEEITGALHRKDSVTLVGFGTFLQRHRGART 79
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
+ P + + ++ F+ GK LK+ +N
Sbjct: 80 GKNPQTGEPVKIKASNTVAFKPGKALKDSVN 110
>gi|302668930|ref|YP_003832755.1| DNA-binding protein [Butyrivibrio proteoclasticus B316]
gi|302397270|gb|ADL36173.1| DNA-binding protein [Butyrivibrio proteoclasticus B316]
Length = 92
Score = 89.1 bits (220), Expect = 2e-16, Method: Composition-based stats.
Identities = 32/93 (34%), Positives = 51/93 (54%), Gaps = 1/93 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI +AK L+ +D K ++ L +++ L G+V++ GFG+F KRAAR
Sbjct: 1 MNKTELIDAMAKAT-GLSKKDAGKALDALTGTVSKELKKKGKVQLVGFGTFETVKRAART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSP 93
+ P I + + P F+AGK LK+ +N
Sbjct: 60 GKNPQTGAAIKIPASIAPKFKAGKALKDAVNKK 92
>gi|152970723|ref|YP_001335832.1| integration host factor subunit alpha [Klebsiella pneumoniae
subsp. pneumoniae MGH 78578]
gi|206579803|ref|YP_002237980.1| integration host factor, alpha subunit [Klebsiella pneumoniae
342]
gi|238895229|ref|YP_002919964.1| integration host factor subunit alpha [Klebsiella pneumoniae
NTUH-K2044]
gi|288934890|ref|YP_003438949.1| integration host factor, subunit alpha [Klebsiella variicola
At-22]
gi|290509032|ref|ZP_06548403.1| integration host factor, alpha subunit [Klebsiella sp. 1_1_55]
gi|166918509|sp|A6TAI1|IHFA_KLEP7 RecName: Full=Integration host factor subunit alpha;
Short=IHF-alpha
gi|226709730|sp|B5XQD2|IHFA_KLEP3 RecName: Full=Integration host factor subunit alpha;
Short=IHF-alpha
gi|150955572|gb|ABR77602.1| integration host factor alpha subunit [Klebsiella pneumoniae
subsp. pneumoniae MGH 78578]
gi|206568861|gb|ACI10637.1| integration host factor, alpha subunit [Klebsiella pneumoniae
342]
gi|238547546|dbj|BAH63897.1| integration host factor alpha subunit [Klebsiella pneumoniae
subsp. pneumoniae NTUH-K2044]
gi|288889599|gb|ADC57917.1| integration host factor, alpha subunit [Klebsiella variicola
At-22]
gi|289778426|gb|EFD86423.1| integration host factor, alpha subunit [Klebsiella sp. 1_1_55]
Length = 99
Score = 89.1 bits (220), Expect = 2e-16, Method: Composition-based stats.
Identities = 28/96 (29%), Positives = 51/96 (53%), Gaps = 1/96 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ + + K L+ +D +++V + EE+ +AL NG +V++ GFG+F +R + R
Sbjct: 4 TKAEMSEYLFDKL-GLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 62
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDSTL 97
R P + I + + V FR G+ LK R+ +
Sbjct: 63 RNPKTGEDIPITARRVVTFRPGQKLKSRVENASPKD 98
>gi|260219592|emb|CBA26437.1| Integration host factor subunit alpha [Curvibacter putative
symbiont of Hydra magnipapillata]
Length = 118
Score = 89.1 bits (220), Expect = 2e-16, Method: Composition-based stats.
Identities = 26/97 (26%), Positives = 50/97 (51%), Gaps = 1/97 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ L + ++ LN ++ + +++ + + +L +G V+I GFG+F +R +A R
Sbjct: 23 TKAQLSDLLFEQI-GLNKRESKDMIDAFFDLIASSLVDGTDVKISGFGNFQIRTKAPRPG 81
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDSTLS 98
R P + I ++ + V F A LKE++ T S
Sbjct: 82 RNPRTGEAIPIQARRVVTFHASHKLKEQIQDEGKTES 118
>gi|163752059|ref|ZP_02159267.1| integration host factor, alpha subunit [Shewanella benthica KT99]
gi|161328059|gb|EDP99229.1| integration host factor, alpha subunit [Shewanella benthica KT99]
Length = 98
Score = 89.1 bits (220), Expect = 2e-16, Method: Composition-based stats.
Identities = 27/95 (28%), Positives = 50/95 (52%), Gaps = 1/95 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ + + + +N + +++V EE+ QAL +G +V++ GFG+F +R + R
Sbjct: 4 TKAEMAEHLFE-TLGINKRVAKEMVETFFEEIRQALESGEQVKLSGFGNFDLRDKNQRPG 62
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDST 96
R P + I + + V FR G+ LK R+ +S
Sbjct: 63 RNPKTGEDIPISARRVVTFRPGQKLKSRVEEANSN 97
>gi|198283418|ref|YP_002219739.1| histone family protein DNA-binding protein [Acidithiobacillus
ferrooxidans ATCC 53993]
gi|218667634|ref|YP_002426011.1| DNA-binding protein HU family protein [Acidithiobacillus
ferrooxidans ATCC 23270]
gi|198247939|gb|ACH83532.1| histone family protein DNA-binding protein [Acidithiobacillus
ferrooxidans ATCC 53993]
gi|218519847|gb|ACK80433.1| DNA-binding protein HU family protein [Acidithiobacillus
ferrooxidans ATCC 23270]
Length = 91
Score = 89.1 bits (220), Expect = 2e-16, Method: Composition-based stats.
Identities = 24/92 (26%), Positives = 44/92 (47%), Gaps = 1/92 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K + +A ++ ++ D EK+ + + L G++ GF +F V ++ AR
Sbjct: 1 MNKLEFVAALA-QHGAMSKVDAEKMFQVFRHTLETELPTAGKIVFPGFCTFEVAEKPARK 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P + I + K F+AGK +++NS
Sbjct: 60 GRNPATGQEIDIPAKKSIKFKAGKEFADKVNS 91
>gi|124267071|ref|YP_001021075.1| integration host factor alpha-subunit [Methylibium petroleiphilum
PM1]
gi|124259846|gb|ABM94840.1| integration host factor alpha-subunit [Methylibium petroleiphilum
PM1]
Length = 113
Score = 89.1 bits (220), Expect = 2e-16, Method: Composition-based stats.
Identities = 24/89 (26%), Positives = 44/89 (49%), Gaps = 1/89 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ L + ++ LN ++ + +V E + L G V++ GFG+F +R++A R
Sbjct: 15 TKAELAELLFERL-GLNKRESKDMVEAFFELIHGQLVEGQDVKLSGFGNFQIRRKAPRPG 73
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P + I ++ + V F A LK +
Sbjct: 74 RNPRTGEAIPIKARNVVTFHASHKLKGVV 102
>gi|262382608|ref|ZP_06075745.1| DNA-binding protein HU-beta [Bacteroides sp. 2_1_33B]
gi|262295486|gb|EEY83417.1| DNA-binding protein HU-beta [Bacteroides sp. 2_1_33B]
Length = 95
Score = 89.1 bits (220), Expect = 2e-16, Method: Composition-based stats.
Identities = 26/96 (27%), Positives = 45/96 (46%), Gaps = 1/96 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M + L+ T+A K + + + V E T+AL + G + + GFG+ S ++ R+
Sbjct: 1 MNRRELVKTLADKMS-VTQAEAMRFVQAWEETTTEALESDGSLMLLGFGTLSAWEQTERI 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDST 96
R P + + F+ GK L +RLN+ S
Sbjct: 60 GRNPRNGVAYMIRARRSVKFKPGKLLLKRLNASSSK 95
>gi|319951158|ref|ZP_08025003.1| histone family protein DNA-binding protein [Dietzia cinnamea P4]
gi|319435174|gb|EFV90449.1| histone family protein DNA-binding protein [Dietzia cinnamea P4]
Length = 126
Score = 89.1 bits (220), Expect = 2e-16, Method: Composition-based stats.
Identities = 28/90 (31%), Positives = 46/90 (51%), Gaps = 1/90 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI +A + ++Q + + L+ + + +A+G + I GFG F + RAAR+
Sbjct: 1 MNKADLIAELADRMGG-DHQLATEALENTLDIIVRTVASGESITIMGFGIFEKKARAARV 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
AR P + I V P FR G+ K +
Sbjct: 60 ARNPHTGESIPVPPTYSPVFRPGQYFKSVI 89
>gi|237747673|ref|ZP_04578153.1| integration host factor subunit alpha [Oxalobacter formigenes
OXCC13]
gi|229379035|gb|EEO29126.1| integration host factor subunit alpha [Oxalobacter formigenes
OXCC13]
Length = 129
Score = 89.1 bits (220), Expect = 2e-16, Method: Composition-based stats.
Identities = 26/94 (27%), Positives = 47/94 (50%), Gaps = 1/94 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ L + ++ LN ++ +++V EE+ AL G V++ GFG+F +R + R
Sbjct: 34 TKAELTELLYEQ-VGLNKREAKEMVETFFEEICGALERGEAVKLSGFGNFQLRDKPQRPG 92
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDS 95
R P + I + + V F A + LK + S +
Sbjct: 93 RNPRTGEEIPITARRVVTFHASQKLKSMVESAEK 126
>gi|262275830|ref|ZP_06053639.1| integration host factor alpha subunit [Grimontia hollisae CIP
101886]
gi|262219638|gb|EEY70954.1| integration host factor alpha subunit [Grimontia hollisae CIP
101886]
Length = 98
Score = 89.1 bits (220), Expect = 2e-16, Method: Composition-based stats.
Identities = 27/93 (29%), Positives = 49/93 (52%), Gaps = 1/93 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ L + + N ++ +D ++ V EE+ +AL +G +V++ GFG+F +R + R
Sbjct: 4 TKADLAENLFE-NVGMSKRDAKETVEAFFEEIRKALESGEQVKLSGFGNFDLRDKNERPG 62
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLNSPD 94
R P + I + + V FR G+ LK R+
Sbjct: 63 RNPKTGEDIPITARRVVTFRPGQKLKARVEKAK 95
>gi|237801808|ref|ZP_04590269.1| integration host factor, beta subunit, putative [Pseudomonas
syringae pv. oryzae str. 1_6]
gi|331024667|gb|EGI04723.1| integration host factor, beta subunit, putative [Pseudomonas
syringae pv. oryzae str. 1_6]
Length = 91
Score = 89.1 bits (220), Expect = 2e-16, Method: Composition-based stats.
Identities = 28/91 (30%), Positives = 48/91 (52%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K + IA+K + +K+++ +LEE+T AL V + GFG+F R R AR
Sbjct: 1 MRKPEVAAAIAEK-ADITKDQAKKVLDAILEEITGALHRKESVTLVGFGTFLQRHRGART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
+ P + + ++ F+ GK+LK+ +N
Sbjct: 60 GKNPQTGEPVKIKASNTVAFKPGKSLKDSVN 90
>gi|222148267|ref|YP_002549224.1| HU-like DNA-binding protein alpha subunit [Agrobacterium vitis
S4]
gi|221735255|gb|ACM36218.1| HU-like DNA-binding protein alpha subunit [Agrobacterium vitis
S4]
Length = 91
Score = 89.1 bits (220), Expect = 2e-16, Method: Composition-based stats.
Identities = 32/92 (34%), Positives = 48/92 (52%), Gaps = 1/92 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS L+ +A K L+ D V+ + + + L NGG + + GFG+F+V R A
Sbjct: 1 MNKSELVNAVADK-AGLSKADAASAVDAVFDTVQAELKNGGDIRLAGFGAFTVSHREASK 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P + + + VP F AGK LK+ +NS
Sbjct: 60 GRNPSTGAEVDIPARNVPKFTAGKGLKDAVNS 91
>gi|163788099|ref|ZP_02182545.1| keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate
aldolase [Flavobacteriales bacterium ALC-1]
gi|159876419|gb|EDP70477.1| keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate
aldolase [Flavobacteriales bacterium ALC-1]
Length = 90
Score = 89.1 bits (220), Expect = 2e-16, Method: Composition-based stats.
Identities = 34/91 (37%), Positives = 52/91 (57%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI +A+ N + +K ++ LL ++ +L G RV + GFGS+SV +RAAR
Sbjct: 1 MNKTDLINGMAE-NAGITKAAAKKALDSLLVDIEGSLQKGNRVSLVGFGSWSVSRRAARD 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P K I ++ K V F+AG +L +N
Sbjct: 60 GRNPQTGKTIKIKAKNVVKFKAGSDLSSAVN 90
>gi|315499460|ref|YP_004088263.1| histone family protein DNA-binding protein [Asticcacaulis
excentricus CB 48]
gi|315417472|gb|ADU14112.1| histone family protein DNA-binding protein [Asticcacaulis
excentricus CB 48]
Length = 91
Score = 89.1 bits (220), Expect = 2e-16, Method: Composition-based stats.
Identities = 28/92 (30%), Positives = 43/92 (46%), Gaps = 1/92 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M S LI IA ++ + + IV+ + + +A G V + FG F V+ + AR
Sbjct: 1 MNTSDLIDKIATEH-GVTKVAAKAIVDTVFGSIVEAAVLGQEVNLPSFGKFKVQDKPARE 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P I + F+ GK LK+RLN+
Sbjct: 60 GRNPSTGATIQIAASKKLVFQPGKALKDRLNA 91
>gi|158339956|ref|YP_001521126.1| DNA-binding protein HU [Acaryochloris marina MBIC11017]
gi|158310197|gb|ABW31812.1| DNA-binding protein HU [Acaryochloris marina MBIC11017]
Length = 91
Score = 89.1 bits (220), Expect = 2e-16, Method: Composition-based stats.
Identities = 29/91 (31%), Positives = 50/91 (54%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K L+ +IA+K+ + + I++ + E + ++++G +V + GFGSF R R AR
Sbjct: 1 MNKGELVDSIAEKS-GATKKQADAILSAVTETIIDSVSSGEKVTLVGFGSFEARDRKARN 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P K +++ P F AGK KE++
Sbjct: 60 GRNPQTGKKLTIPATKAPVFSAGKVFKEQVK 90
>gi|50121344|ref|YP_050511.1| integration host factor subunit alpha [Pectobacterium
atrosepticum SCRI1043]
gi|227111539|ref|ZP_03825195.1| integration host factor subunit alpha [Pectobacterium carotovorum
subsp. brasiliensis PBR1692]
gi|227327039|ref|ZP_03831063.1| integration host factor subunit alpha [Pectobacterium carotovorum
subsp. carotovorum WPP14]
gi|253688281|ref|YP_003017471.1| integration host factor, alpha subunit [Pectobacterium
carotovorum subsp. carotovorum PC1]
gi|81693249|sp|Q6D4H4|IHFA_ERWCT RecName: Full=Integration host factor subunit alpha;
Short=IHF-alpha
gi|259491532|sp|C6DFZ2|IHFA_PECCP RecName: Full=Integration host factor subunit alpha;
Short=IHF-alpha
gi|49611870|emb|CAG75319.1| integration host factor alpha-subunit [Pectobacterium
atrosepticum SCRI1043]
gi|251754859|gb|ACT12935.1| integration host factor, alpha subunit [Pectobacterium
carotovorum subsp. carotovorum PC1]
Length = 98
Score = 89.1 bits (220), Expect = 2e-16, Method: Composition-based stats.
Identities = 28/95 (29%), Positives = 52/95 (54%), Gaps = 1/95 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ + + +K L+ +D +++V + EE+ +AL NG +V++ GFG+F +R + R
Sbjct: 4 TKAEMSEYLFEKL-GLSKRDAKELVELFFEEVRRALENGEQVKLSGFGNFDLRDKNQRPG 62
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDST 96
R P + I + + V FR G+ LK R+ +
Sbjct: 63 RNPKTGEDIPITARRVVTFRPGQKLKSRVENASPK 97
>gi|194364617|ref|YP_002027227.1| histone family protein DNA-binding protein [Stenotrophomonas
maltophilia R551-3]
gi|254523802|ref|ZP_05135857.1| DNA-binding protein HU [Stenotrophomonas sp. SKA14]
gi|194347421|gb|ACF50544.1| histone family protein DNA-binding protein [Stenotrophomonas
maltophilia R551-3]
gi|219721393|gb|EED39918.1| DNA-binding protein HU [Stenotrophomonas sp. SKA14]
Length = 90
Score = 88.7 bits (219), Expect = 2e-16, Method: Composition-based stats.
Identities = 33/91 (36%), Positives = 50/91 (54%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI +A+ L + + V+ ++ +T+AL +G V + GFG+F VR RAAR
Sbjct: 1 MNKTELIDAVAEA-ADLTKAESSRAVDAVVAAVTKALKDGDAVTLVGFGTFQVRDRAART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P I + P F+AGK LK+ +N
Sbjct: 60 GRNPKTGDTIKIAASKNPSFKAGKALKDAVN 90
>gi|22125804|ref|NP_669227.1| integration host factor subunit alpha [Yersinia pestis KIM 10]
gi|45442004|ref|NP_993543.1| integration host factor subunit alpha [Yersinia pestis biovar
Microtus str. 91001]
gi|51596659|ref|YP_070850.1| integration host factor subunit alpha [Yersinia
pseudotuberculosis IP 32953]
gi|108807766|ref|YP_651682.1| integration host factor subunit alpha [Yersinia pestis Antiqua]
gi|108812043|ref|YP_647810.1| integration host factor subunit alpha [Yersinia pestis Nepal516]
gi|123442195|ref|YP_001006176.1| integration host factor subunit alpha [Yersinia enterocolitica
subsp. enterocolitica 8081]
gi|145598026|ref|YP_001162102.1| integration host factor subunit alpha [Yersinia pestis Pestoides
F]
gi|149365665|ref|ZP_01887700.1| integration host factor alpha-subunit [Yersinia pestis CA88-4125]
gi|153948307|ref|YP_001400695.1| integration host factor subunit alpha [Yersinia
pseudotuberculosis IP 31758]
gi|162420689|ref|YP_001607026.1| integration host factor subunit alpha [Yersinia pestis Angola]
gi|165927499|ref|ZP_02223331.1| integration host factor, alpha subunit [Yersinia pestis biovar
Orientalis str. F1991016]
gi|165939484|ref|ZP_02228030.1| integration host factor, alpha subunit [Yersinia pestis biovar
Orientalis str. IP275]
gi|166011822|ref|ZP_02232720.1| integration host factor, alpha subunit [Yersinia pestis biovar
Antiqua str. E1979001]
gi|166211124|ref|ZP_02237159.1| integration host factor, alpha subunit [Yersinia pestis biovar
Antiqua str. B42003004]
gi|167400951|ref|ZP_02306457.1| integration host factor, alpha subunit [Yersinia pestis biovar
Antiqua str. UG05-0454]
gi|167422126|ref|ZP_02313879.1| integration host factor, alpha subunit [Yersinia pestis biovar
Orientalis str. MG05-1020]
gi|167424960|ref|ZP_02316713.1| integration host factor, alpha subunit [Yersinia pestis biovar
Mediaevalis str. K1973002]
gi|170024065|ref|YP_001720570.1| integration host factor subunit alpha [Yersinia
pseudotuberculosis YPIII]
gi|186895716|ref|YP_001872828.1| integration host factor subunit alpha [Yersinia
pseudotuberculosis PB1/+]
gi|218929515|ref|YP_002347390.1| integration host factor subunit alpha [Yersinia pestis CO92]
gi|229837952|ref|ZP_04458111.1| integration host factor (IHF), DNA-binding protein, alpha subunit
[Yersinia pestis biovar Orientalis str. PEXU2]
gi|229895112|ref|ZP_04510288.1| integration host factor (IHF), DNA-binding protein, alpha subunit
[Yersinia pestis Pestoides A]
gi|229898513|ref|ZP_04513658.1| integration host factor (IHF), DNA-binding protein, alpha subunit
[Yersinia pestis biovar Orientalis str. India 195]
gi|229902354|ref|ZP_04517474.1| integration host factor (IHF), DNA-binding protein, alpha subunit
[Yersinia pestis Nepal516]
gi|238749476|ref|ZP_04610981.1| Integration host factor subunit alpha [Yersinia rohdei ATCC
43380]
gi|238765301|ref|ZP_04626228.1| Integration host factor subunit alpha [Yersinia kristensenii ATCC
33638]
gi|238787094|ref|ZP_04630894.1| Integration host factor subunit alpha [Yersinia frederiksenii
ATCC 33641]
gi|270490464|ref|ZP_06207538.1| integration host factor, alpha subunit [Yersinia pestis KIM D27]
gi|332161617|ref|YP_004298194.1| integration host factor subunit alpha [Yersinia enterocolitica
subsp. palearctica 105.5R(r)]
gi|21362607|sp|Q8ZDX2|IHFA_YERPE RecName: Full=Integration host factor subunit alpha;
Short=IHF-alpha
gi|55977891|sp|Q9X9F6|IHFA_YERPS RecName: Full=Integration host factor subunit alpha;
Short=IHF-alpha
gi|122979583|sp|Q1C735|IHFA_YERPA RecName: Full=Integration host factor subunit alpha;
Short=IHF-alpha
gi|123373196|sp|Q1CIH0|IHFA_YERPN RecName: Full=Integration host factor subunit alpha;
Short=IHF-alpha
gi|166918533|sp|A1JMM4|IHFA_YERE8 RecName: Full=Integration host factor subunit alpha;
Short=IHF-alpha
gi|166918534|sp|A7FHG7|IHFA_YERP3 RecName: Full=Integration host factor subunit alpha;
Short=IHF-alpha
gi|166918535|sp|A4TIL7|IHFA_YERPP RecName: Full=Integration host factor subunit alpha;
Short=IHF-alpha
gi|226709763|sp|B2K662|IHFA_YERPB RecName: Full=Integration host factor subunit alpha;
Short=IHF-alpha
gi|226709764|sp|A9R0A2|IHFA_YERPG RecName: Full=Integration host factor subunit alpha;
Short=IHF-alpha
gi|226709765|sp|B1JJ23|IHFA_YERPY RecName: Full=Integration host factor subunit alpha;
Short=IHF-alpha
gi|21958730|gb|AAM85478.1|AE013793_14 integration host factor (IHF), alpha subunit [Yersinia pestis KIM
10]
gi|45436867|gb|AAS62420.1| integration host factor alpha-subunit [Yersinia pestis biovar
Microtus str. 91001]
gi|51589941|emb|CAH21573.1| integration host factor alpha-subunit [Yersinia
pseudotuberculosis IP 32953]
gi|108775691|gb|ABG18210.1| integration host factor alpha-subunit [Yersinia pestis Nepal516]
gi|108779679|gb|ABG13737.1| integration host factor alpha-subunit [Yersinia pestis Antiqua]
gi|115348126|emb|CAL21054.1| integration host factor alpha-subunit [Yersinia pestis CO92]
gi|122089156|emb|CAL11998.1| integration host factor alpha-subunit [Yersinia enterocolitica
subsp. enterocolitica 8081]
gi|145209722|gb|ABP39129.1| integration host factor alpha-subunit [Yersinia pestis Pestoides
F]
gi|149292078|gb|EDM42152.1| integration host factor alpha-subunit [Yersinia pestis CA88-4125]
gi|152959802|gb|ABS47263.1| integration host factor, alpha subunit [Yersinia
pseudotuberculosis IP 31758]
gi|162353504|gb|ABX87452.1| integration host factor, alpha subunit [Yersinia pestis Angola]
gi|165912533|gb|EDR31164.1| integration host factor, alpha subunit [Yersinia pestis biovar
Orientalis str. IP275]
gi|165920554|gb|EDR37831.1| integration host factor, alpha subunit [Yersinia pestis biovar
Orientalis str. F1991016]
gi|165989287|gb|EDR41588.1| integration host factor, alpha subunit [Yersinia pestis biovar
Antiqua str. E1979001]
gi|166208304|gb|EDR52784.1| integration host factor, alpha subunit [Yersinia pestis biovar
Antiqua str. B42003004]
gi|166958938|gb|EDR55959.1| integration host factor, alpha subunit [Yersinia pestis biovar
Orientalis str. MG05-1020]
gi|167049804|gb|EDR61212.1| integration host factor, alpha subunit [Yersinia pestis biovar
Antiqua str. UG05-0454]
gi|167056147|gb|EDR65925.1| integration host factor, alpha subunit [Yersinia pestis biovar
Mediaevalis str. K1973002]
gi|169750599|gb|ACA68117.1| integration host factor, alpha subunit [Yersinia
pseudotuberculosis YPIII]
gi|186698742|gb|ACC89371.1| integration host factor, alpha subunit [Yersinia
pseudotuberculosis PB1/+]
gi|229680689|gb|EEO76785.1| integration host factor (IHF), DNA-binding protein, alpha subunit
[Yersinia pestis Nepal516]
gi|229688061|gb|EEO80132.1| integration host factor (IHF), DNA-binding protein, alpha subunit
[Yersinia pestis biovar Orientalis str. India 195]
gi|229694318|gb|EEO84365.1| integration host factor (IHF), DNA-binding protein, alpha subunit
[Yersinia pestis biovar Orientalis str. PEXU2]
gi|229701874|gb|EEO89897.1| integration host factor (IHF), DNA-binding protein, alpha subunit
[Yersinia pestis Pestoides A]
gi|238696474|gb|EEP89264.1| Integration host factor subunit alpha [Yersinia kristensenii ATCC
33638]
gi|238712131|gb|EEQ04344.1| Integration host factor subunit alpha [Yersinia rohdei ATCC
43380]
gi|238724882|gb|EEQ16522.1| Integration host factor subunit alpha [Yersinia frederiksenii
ATCC 33641]
gi|270338968|gb|EFA49745.1| integration host factor, alpha subunit [Yersinia pestis KIM D27]
gi|318605892|emb|CBY27390.1| integration host factor alpha subunit [Yersinia enterocolitica
subsp. palearctica Y11]
gi|320015082|gb|ADV98653.1| integration host factor (IHF), DNA-binding protein, alpha subunit
[Yersinia pestis biovar Medievalis str. Harbin 35]
gi|325665847|gb|ADZ42491.1| integration host factor subunit alpha [Yersinia enterocolitica
subsp. palearctica 105.5R(r)]
Length = 98
Score = 88.7 bits (219), Expect = 2e-16, Method: Composition-based stats.
Identities = 29/95 (30%), Positives = 51/95 (53%), Gaps = 1/95 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ + + +K L+ +D + +V + EE+ +AL NG +V++ GFG+F +R + R
Sbjct: 4 TKAEMSEHLFEKL-GLSKRDAKDLVELFFEEVRRALENGEQVKLSGFGNFDLRDKNQRPG 62
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDST 96
R P + I + + V FR G+ LK R+ S
Sbjct: 63 RNPKTGEDIPITARRVVTFRPGQKLKSRVESATPK 97
>gi|197105274|ref|YP_002130651.1| DNA-binding protein [Phenylobacterium zucineum HLK1]
gi|196478694|gb|ACG78222.1| DNA-binding protein [Phenylobacterium zucineum HLK1]
Length = 91
Score = 88.7 bits (219), Expect = 2e-16, Method: Composition-based stats.
Identities = 31/92 (33%), Positives = 46/92 (50%), Gaps = 1/92 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ L+ IA K LN ++ ++ + ++ +L G V + GFGSF KRAA +
Sbjct: 1 MTKAELVSAIADK-AGLNKAQAKEALDAFIASVSTSLKAGREVRLVGFGSFVPVKRAAGM 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
AR P + + FR G+ LK LNS
Sbjct: 60 ARNPRTGEKVRRPASQTCRFRVGEALKSTLNS 91
>gi|119505267|ref|ZP_01627342.1| integration host factor subunit alpha [marine gamma
proteobacterium HTCC2080]
gi|119458958|gb|EAW40058.1| integration host factor subunit alpha [marine gamma
proteobacterium HTCC2080]
Length = 104
Score = 88.7 bits (219), Expect = 2e-16, Method: Composition-based stats.
Identities = 25/89 (28%), Positives = 47/89 (52%), Gaps = 1/89 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
KS + + ++ LN ++ +++V EE+ L N +V++ GFG+F +R + R
Sbjct: 5 TKSEMADKLFEEL-GLNKREAKELVEQFFEEIRICLENNEQVKLSGFGNFDLRDKRQRPG 63
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P + I + + V FR G+ LK ++
Sbjct: 64 RNPKTGEAIPISARRVVTFRPGQKLKAKV 92
>gi|83593003|ref|YP_426755.1| integration host factor, subunit alpha [Rhodospirillum rubrum
ATCC 11170]
gi|123739530|sp|Q2RTS7|IHFA_RHORT RecName: Full=Integration host factor subunit alpha;
Short=IHF-alpha
gi|83575917|gb|ABC22468.1| Integration host factor, alpha subunit [Rhodospirillum rubrum
ATCC 11170]
Length = 105
Score = 88.7 bits (219), Expect = 2e-16, Method: Composition-based stats.
Identities = 28/91 (30%), Positives = 51/91 (56%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
+ ++ L + ++ L+ + ++ M+L EM++AL G V+I FGSFSVR++ R+
Sbjct: 6 ITRAQLSEAVYQE-VGLSRNESADLLEMVLNEMSEALVEGDTVKISSFGSFSVREKGERV 64
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + + + + V FR + LK R+N
Sbjct: 65 GRNPKTGEEVPILPRRVLVFRPSQLLKARIN 95
>gi|119510023|ref|ZP_01629164.1| Histone-like DNA-binding protein [Nodularia spumigena CCY9414]
gi|119465347|gb|EAW46243.1| Histone-like DNA-binding protein [Nodularia spumigena CCY9414]
Length = 100
Score = 88.7 bits (219), Expect = 2e-16, Method: Composition-based stats.
Identities = 27/90 (30%), Positives = 50/90 (55%), Gaps = 1/90 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K L+ +++K + + + ++ LE + +A+++G +V + GFGSF R+R AR
Sbjct: 1 MNKGELVDAVSEK-ASVTKKQADAVLTAALETIIEAVSSGDKVTLVGFGSFESRERKARE 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P + + + VP F AGK +E++
Sbjct: 60 GRNPKTNEKMEIPATRVPAFSAGKLFREKV 89
>gi|170726421|ref|YP_001760447.1| integration host factor subunit alpha [Shewanella woodyi ATCC
51908]
gi|226709754|sp|B1KRE5|IHFA_SHEWM RecName: Full=Integration host factor subunit alpha;
Short=IHF-alpha
gi|169811768|gb|ACA86352.1| integration host factor, alpha subunit [Shewanella woodyi ATCC
51908]
Length = 97
Score = 88.7 bits (219), Expect = 2e-16, Method: Composition-based stats.
Identities = 26/95 (27%), Positives = 50/95 (52%), Gaps = 1/95 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ + + + +N + +++V EE+ QAL +G +V++ GFG+F +R + R
Sbjct: 4 TKAEMAEHLFE-TLGINKRVAKEMVEAFFEEIRQALESGEQVKLSGFGNFDLRDKNQRPG 62
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDST 96
R P + I + + V FR G+ LK R+ ++
Sbjct: 63 RNPKTGEDIPISARRVVTFRPGQKLKSRVEEANAK 97
>gi|261211051|ref|ZP_05925341.1| integration host factor alpha subunit [Vibrio sp. RC341]
gi|262402428|ref|ZP_06078989.1| integration host factor alpha subunit [Vibrio sp. RC586]
gi|260840026|gb|EEX66626.1| integration host factor alpha subunit [Vibrio sp. RC341]
gi|262351210|gb|EEZ00343.1| integration host factor alpha subunit [Vibrio sp. RC586]
Length = 98
Score = 88.7 bits (219), Expect = 2e-16, Method: Composition-based stats.
Identities = 27/93 (29%), Positives = 50/93 (53%), Gaps = 1/93 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ L + +K ++ +D + V + EE+ +AL +G +V++ GFG+F +R + R
Sbjct: 4 TKAELAEALFEKL-GMSKRDAKDTVEVFFEEIRKALESGEQVKLSGFGNFDLRDKNQRPG 62
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLNSPD 94
R P + I + + V FR G+ LK R+ +
Sbjct: 63 RNPKTGEDIPITARRVVTFRPGQKLKARVENIK 95
>gi|217976981|ref|YP_002361128.1| histone family protein DNA-binding protein [Methylocella silvestris
BL2]
gi|217502357|gb|ACK49766.1| histone family protein DNA-binding protein [Methylocella silvestris
BL2]
Length = 118
Score = 88.7 bits (219), Expect = 2e-16, Method: Composition-based stats.
Identities = 26/90 (28%), Positives = 44/90 (48%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
+++L+ + + P L+ I M LEE+ +AL G V++R FG FSVR + R+
Sbjct: 19 TRAALLDAVYEACPNLSRAQARDIFEMALEEIAEALVRGDCVKLRSFGLFSVRAKRERIG 78
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P ++ + V F+ L +N
Sbjct: 79 RNPRTGVEAPIKPRRVLTFKPSPVLSGCVN 108
>gi|152967315|ref|YP_001363099.1| histone family protein DNA-binding protein [Kineococcus
radiotolerans SRS30216]
gi|151361832|gb|ABS04835.1| histone family protein DNA-binding protein [Kineococcus
radiotolerans SRS30216]
Length = 92
Score = 88.7 bits (219), Expect = 2e-16, Method: Composition-based stats.
Identities = 24/91 (26%), Positives = 43/91 (47%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M +S L+ +A++ L D + ++N L + + +A+A G V++ G + +RAAR
Sbjct: 1 MNRSELVTAVAQR-AGLTQTDTDAVINALGDVLVEAVAKGEAVKLPGLMTVERVERAART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + + + AG LK N
Sbjct: 60 GRNPRTGETMEIAASYGAKLTAGSKLKAAAN 90
>gi|323142051|ref|ZP_08076899.1| DNA-binding protein HU-alpha [Phascolarctobacterium sp. YIT 12067]
gi|322413438|gb|EFY04309.1| DNA-binding protein HU-alpha [Phascolarctobacterium sp. YIT 12067]
Length = 118
Score = 88.7 bits (219), Expect = 2e-16, Method: Composition-based stats.
Identities = 31/93 (33%), Positives = 51/93 (54%), Gaps = 1/93 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI +A+K L +DVEK + LE + + +A G +V++ GFG+F R R R
Sbjct: 27 MNKTELIAAVAEK-AGLTKKDVEKTITATLETVKEVVAKGDKVQVVGFGTFEARARKERE 85
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSP 93
+ P + + + +P F+AGK K+ +N
Sbjct: 86 GKNPQNGEKVVIPAATIPAFKAGKAFKDAVNVK 118
>gi|227485001|ref|ZP_03915317.1| DNA-binding protein HU [Anaerococcus lactolyticus ATCC 51172]
gi|227236998|gb|EEI87013.1| DNA-binding protein HU [Anaerococcus lactolyticus ATCC 51172]
Length = 92
Score = 88.7 bits (219), Expect = 2e-16, Method: Composition-based stats.
Identities = 37/93 (39%), Positives = 54/93 (58%), Gaps = 2/93 (2%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS L+ +I++K+ L + EK +N LE + +AL G +V++ GFG+F VR R AR
Sbjct: 1 MNKSELLNSISEKS-GLKKVESEKALNAFLETVQEALVKGDKVQLVGFGTFEVRDRKARE 59
Query: 61 ARAPLAQKV-ISVEEKMVPFFRAGKNLKERLNS 92
R P + I + P F+AGK LKE +N
Sbjct: 60 GRNPRKPEEVIQIPASKAPVFKAGKTLKEAVNK 92
>gi|47705|emb|CAA34713.1| integration host factor (AA 1-99) [Salmonella enterica subsp.
enterica serovar Typhimurium]
Length = 99
Score = 88.7 bits (219), Expect = 2e-16, Method: Composition-based stats.
Identities = 29/95 (30%), Positives = 51/95 (53%), Gaps = 1/95 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ + + K L+ +D +++V + EE+ +AL NG +V++ GFG+F +R + R
Sbjct: 4 TKAEMSEYLFDKL-GLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFGLRDKNQRPG 62
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDST 96
R P + I + + V FR G+ LK R+ S
Sbjct: 63 RNPKTGEDIPITARRVVTFRPGQKLKSRVESASPK 97
>gi|120435797|ref|YP_861483.1| histone-like DNA-binding protein [Gramella forsetii KT0803]
gi|117577947|emb|CAL66416.1| histone-like bacterial DNA-binding protein [Gramella forsetii
KT0803]
Length = 90
Score = 88.7 bits (219), Expect = 2e-16, Method: Composition-based stats.
Identities = 35/91 (38%), Positives = 53/91 (58%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI +A+ N ++ +K + LE + ++L G RV + GFGS+SV KRAAR
Sbjct: 1 MNKTDLIDAMAE-NAGISKAAAKKALESFLENVEKSLKKGDRVSLVGFGSWSVSKRAARE 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P K I + K V F+AG +L++ +N
Sbjct: 60 GRNPQTGKTIKIAAKNVVKFKAGADLQKAVN 90
>gi|238757777|ref|ZP_04618960.1| Integration host factor subunit alpha [Yersinia aldovae ATCC
35236]
gi|238704020|gb|EEP96554.1| Integration host factor subunit alpha [Yersinia aldovae ATCC
35236]
Length = 98
Score = 88.7 bits (219), Expect = 2e-16, Method: Composition-based stats.
Identities = 28/89 (31%), Positives = 50/89 (56%), Gaps = 1/89 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ + + +K L+ +D + +V + EE+ +AL NG +V++ GFG+F +R + R
Sbjct: 4 TKAEMSEHLFEKL-GLSKRDAKDLVELFFEEVRRALENGEQVKLSGFGNFDLRDKNQRPG 62
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P + I + + V FR G+ LK R+
Sbjct: 63 RNPKTGEDIPITARRVVTFRPGQKLKSRV 91
>gi|114776313|ref|ZP_01451358.1| integration host factor, alpha subunit [Mariprofundus
ferrooxydans PV-1]
gi|114553143|gb|EAU55541.1| integration host factor, alpha subunit [Mariprofundus
ferrooxydans PV-1]
Length = 94
Score = 88.7 bits (219), Expect = 2e-16, Method: Composition-based stats.
Identities = 28/90 (31%), Positives = 49/90 (54%), Gaps = 1/90 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ + + ++ L ++ +IV +L+ + +L G V++ GFG F VR++ AR
Sbjct: 1 MTKAEIARIVHER-VGLTKKESAEIVESVLDVIRDSLERGENVKVSGFGHFMVREKHARR 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P I++E + V FRA LK++L
Sbjct: 60 GRNPKTGTDITIEPRSVVTFRASPLLKDKL 89
>gi|326804607|ref|YP_004327478.1| DNA binding protein [Salmonella phage Vi01]
gi|301795257|emb|CBW37975.1| DNA binding protein [Salmonella phage Vi01]
Length = 92
Score = 88.7 bits (219), Expect = 2e-16, Method: Composition-based stats.
Identities = 31/91 (34%), Positives = 47/91 (51%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M ++ I IA + + + EKIV + + A+A G V+ GFG+F V+ + AR
Sbjct: 1 MNRTDFIAHIA-QTQGMTKGEAEKIVASFINGVKTAVAAGQSVQFVGFGAFEVKHQEART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R PL + I +E K V F+ G+ LK N
Sbjct: 60 GRNPLNGQAIQIEAKNVVKFKVGEGLKAAAN 90
>gi|110597798|ref|ZP_01386081.1| Histone-like bacterial DNA-binding protein [Chlorobium ferrooxidans
DSM 13031]
gi|110340523|gb|EAT59006.1| Histone-like bacterial DNA-binding protein [Chlorobium ferrooxidans
DSM 13031]
Length = 102
Score = 88.7 bits (219), Expect = 2e-16, Method: Composition-based stats.
Identities = 33/98 (33%), Positives = 54/98 (55%), Gaps = 1/98 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ L+ IA + L + E +V+ L E + +L +G R+EIRGFGSF++R + R A
Sbjct: 6 TKADLVNVIAHRT-GLTKNETESVVDCLFESIIDSLKSGKRIEIRGFGSFNIRYKNLRQA 64
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDSTLSN 99
R P + ++V+ K VP F+ K K ++ + S
Sbjct: 65 RNPRTGEKVTVDPKNVPTFKISKEFKHAVSESLKSGSE 102
>gi|289677399|ref|ZP_06498289.1| histone-like DNA-binding protein [Pseudomonas syringae pv.
syringae FF5]
gi|302187085|ref|ZP_07263758.1| histone-like DNA-binding protein [Pseudomonas syringae pv.
syringae 642]
gi|330898762|gb|EGH30181.1| histone-like DNA-binding protein [Pseudomonas syringae pv.
japonica str. M301072PT]
gi|330937458|gb|EGH41423.1| histone-like DNA-binding protein [Pseudomonas syringae pv. pisi
str. 1704B]
gi|330952450|gb|EGH52710.1| histone-like DNA-binding protein [Pseudomonas syringae Cit 7]
gi|330976274|gb|EGH76336.1| histone-like DNA-binding protein [Pseudomonas syringae pv. aptata
str. DSM 50252]
Length = 91
Score = 88.7 bits (219), Expect = 3e-16, Method: Composition-based stats.
Identities = 29/91 (31%), Positives = 47/91 (51%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K + IA+K L + +++N +LEE+T AL V + GFG+F R R AR
Sbjct: 1 MRKPEVAAAIAEK-ADLTKEQSNRVLNAILEEITGALNRKDSVTLVGFGTFLQRHRGART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
+ P + + ++ F+ GK LK+ +N
Sbjct: 60 GKNPQTGEPVKIKASNTVAFKPGKALKDSVN 90
>gi|261821457|ref|YP_003259563.1| integration host factor subunit alpha [Pectobacterium wasabiae
WPP163]
gi|261605470|gb|ACX87956.1| integration host factor, alpha subunit [Pectobacterium wasabiae
WPP163]
Length = 98
Score = 88.7 bits (219), Expect = 3e-16, Method: Composition-based stats.
Identities = 28/95 (29%), Positives = 51/95 (53%), Gaps = 1/95 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ + + +K L+ +D + +V + EE+ +AL NG +V++ GFG+F +R + R
Sbjct: 4 TKAEMSEYLFEKL-GLSKRDAKDLVELFFEEVRRALENGEQVKLSGFGNFDLRDKNQRPG 62
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDST 96
R P + I + + V FR G+ LK R+ +
Sbjct: 63 RNPKTGEDIPITARRVVTFRPGQKLKSRVENASPK 97
>gi|152996604|ref|YP_001341439.1| integration host factor subunit alpha [Marinomonas sp. MWYL1]
gi|226709731|sp|A6VYH5|IHFA_MARMS RecName: Full=Integration host factor subunit alpha;
Short=IHF-alpha
gi|150837528|gb|ABR71504.1| integration host factor, alpha subunit [Marinomonas sp. MWYL1]
Length = 98
Score = 88.7 bits (219), Expect = 3e-16, Method: Composition-based stats.
Identities = 23/89 (25%), Positives = 46/89 (51%), Gaps = 1/89 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ L + + L+ +D + +V + + +L +V++ GFG+F VR+++ R
Sbjct: 5 TKADLAENLVD-SIGLSKKDAKDLVEGFFDVVRSSLIERQQVKLSGFGNFEVREKSQRPG 63
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P + I + + V FR G+ LK ++
Sbjct: 64 RNPKTGEEIPITARTVVTFRPGQKLKSKV 92
>gi|197284918|ref|YP_002150790.1| integration host factor subunit alpha [Proteus mirabilis HI4320]
gi|227355321|ref|ZP_03839722.1| integration host factor alpha-subunit [Proteus mirabilis ATCC
29906]
gi|226709739|sp|B4ETL2|IHFA_PROMH RecName: Full=Integration host factor subunit alpha;
Short=IHF-alpha
gi|194682405|emb|CAR42265.1| integration host factor alpha-subunit [Proteus mirabilis HI4320]
gi|227164545|gb|EEI49416.1| integration host factor alpha-subunit [Proteus mirabilis ATCC
29906]
Length = 98
Score = 88.7 bits (219), Expect = 3e-16, Method: Composition-based stats.
Identities = 26/95 (27%), Positives = 50/95 (52%), Gaps = 1/95 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ + + +K ++ +D + +V EE+ ++L NG +V++ GFG+F +R + R
Sbjct: 4 TKAEMAENLFEKL-GVSKRDAKDLVEAFFEEVRRSLENGEQVKLSGFGNFDLRDKNQRPG 62
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDST 96
R P + I + + V FR G+ LK R+ +
Sbjct: 63 RNPKTGEDIPITARRVVTFRPGQKLKSRVENATPK 97
>gi|301166555|emb|CBW26131.1| integration host factor alpha-subunit (IHF-alpha) [Bacteriovorax
marinus SJ]
Length = 137
Score = 88.7 bits (219), Expect = 3e-16, Method: Composition-based stats.
Identities = 23/89 (25%), Positives = 49/89 (55%), Gaps = 1/89 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ ++ + K+ + ++ +V+++ + + LA G +V+I GFG+FS+R +A R+
Sbjct: 4 TKADIVERVYKE-AGFSKKEAADLVDLVFKVIKDTLARGEKVKISGFGNFSIRDKATRVG 62
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P + + + V F+ + LKE +
Sbjct: 63 RNPQTGSAMEISARRVLTFKPSQVLKEDV 91
>gi|145220310|ref|YP_001131019.1| histone family protein DNA-binding protein [Prosthecochloris
vibrioformis DSM 265]
gi|145206474|gb|ABP37517.1| histone family protein DNA-binding protein [Chlorobium
phaeovibrioides DSM 265]
Length = 102
Score = 88.7 bits (219), Expect = 3e-16, Method: Composition-based stats.
Identities = 33/89 (37%), Positives = 51/89 (57%), Gaps = 1/89 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ L+ IA + L + E +V+ L E + +L G R+EIRGFGSF++R + R A
Sbjct: 6 TKADLVNVIAHRT-GLTKNETETVVDSLFESIIDSLKAGKRIEIRGFGSFNIRYKNLRQA 64
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P + ++VE K VP F+ K K+ +
Sbjct: 65 RNPRTGEKVTVEPKNVPTFKISKEFKQAV 93
>gi|304411460|ref|ZP_07393074.1| histone family protein DNA-binding protein [Shewanella baltica
OS183]
gi|307305218|ref|ZP_07584966.1| histone family protein DNA-binding protein [Shewanella baltica
BA175]
gi|304350315|gb|EFM14719.1| histone family protein DNA-binding protein [Shewanella baltica
OS183]
gi|306911521|gb|EFN41946.1| histone family protein DNA-binding protein [Shewanella baltica
BA175]
Length = 91
Score = 88.7 bits (219), Expect = 3e-16, Method: Composition-based stats.
Identities = 25/91 (27%), Positives = 48/91 (52%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI IA + + + +V +L+++ AL+ G ++ + FG+F +R A+
Sbjct: 1 MNKAQLIQRIAAEL-NASQSSTKPVVEQILQQIHVALSEGEKIFLPQFGTFELRYHVAKT 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + I ++ P F+A LK+++N
Sbjct: 60 GRNPQTGEAIEIDGYNQPSFKASTALKQQIN 90
>gi|110834697|ref|YP_693556.1| integration host factor subunit alpha [Alcanivorax borkumensis SK2]
gi|123345421|sp|Q0VNG4|IHFA_ALCBS RecName: Full=Integration host factor subunit alpha;
Short=IHF-alpha
gi|110647808|emb|CAL17284.1| Bacterial nucleoid DNA-binding protein [Alcanivorax borkumensis
SK2]
Length = 100
Score = 88.7 bits (219), Expect = 3e-16, Method: Composition-based stats.
Identities = 27/97 (27%), Positives = 53/97 (54%), Gaps = 1/97 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ + + ++ LN ++ +++V M EE+ +L + V++ GFG+F +R ++ R
Sbjct: 5 TKADMAERLFEEL-GLNKREAKEMVEMFFEEIRHSLEDNIPVKLSGFGNFDLRDKSERPG 63
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDSTLS 98
R P + I + + V FR G+ LK+R+ + T S
Sbjct: 64 RNPKTGEEIPITARRVVTFRPGQKLKQRVEAYAGTKS 100
>gi|329122306|ref|ZP_08250894.1| DNA-binding protein HU [Haemophilus aegyptius ATCC 11116]
gi|327473867|gb|EGF19284.1| DNA-binding protein HU [Haemophilus aegyptius ATCC 11116]
Length = 90
Score = 88.7 bits (219), Expect = 3e-16, Method: Composition-based stats.
Identities = 32/91 (35%), Positives = 49/91 (53%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K++LI IA +LN + + + L+ +T +L G V++ GFG+F V +RAAR
Sbjct: 1 MNKTNLIDAIANA-AELNKKQAKAALEATLDAITASLKEGEPVQLIGFGTFKVNERAART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P I + VP F +GK LK+ +
Sbjct: 60 GRNPQTGAEIQIAASKVPAFVSGKALKDAIK 90
>gi|58979591|gb|AAW83460.1| DNA-binding protein HU [Campylobacter upsaliensis]
gi|58979595|gb|AAW83462.1| DNA-binding protein HU [Campylobacter upsaliensis]
gi|58979599|gb|AAW83464.1| DNA-binding protein HU [Campylobacter upsaliensis]
gi|58979613|gb|AAW83471.1| DNA-binding protein HU [Campylobacter upsaliensis]
gi|58979615|gb|AAW83472.1| DNA-binding protein HU [Campylobacter upsaliensis]
Length = 98
Score = 88.7 bits (219), Expect = 3e-16, Method: Composition-based stats.
Identities = 32/86 (37%), Positives = 45/86 (52%), Gaps = 1/86 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ I +A +N L +D + ++ +T+ LA G + GFG+FS +RAAR
Sbjct: 1 MTKADFISQVA-QNAGLTKKDAGAATDAVISTITEVLAKGDSISFIGFGTFSTTERAARE 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNL 86
AR P K I V V F+ GKNL
Sbjct: 60 ARVPSTGKTIKVPATRVVKFKVGKNL 85
>gi|91214902|ref|ZP_01251875.1| DNA-binding protein HU-beta (NS1) (HU-1) [Psychroflexus torquis
ATCC 700755]
gi|91187329|gb|EAS73699.1| DNA-binding protein HU-beta (NS1) (HU-1) [Psychroflexus torquis
ATCC 700755]
Length = 90
Score = 88.7 bits (219), Expect = 3e-16, Method: Composition-based stats.
Identities = 35/91 (38%), Positives = 53/91 (58%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K++LI +A+ + + + +K + LE + AL G RV + GFGS+SV KRAAR
Sbjct: 1 MNKTNLIDAMAE-DAGVTKAEAKKALESFLENVEGALKKGDRVSLVGFGSWSVSKRAARE 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P K I + K V F+AG +L++ +N
Sbjct: 60 GRNPQTGKTIKIAAKNVVKFKAGSDLQKAVN 90
>gi|291614191|ref|YP_003524348.1| integration host factor, subunit alpha [Sideroxydans
lithotrophicus ES-1]
gi|291584303|gb|ADE11961.1| integration host factor, alpha subunit [Sideroxydans
lithotrophicus ES-1]
Length = 102
Score = 88.7 bits (219), Expect = 3e-16, Method: Composition-based stats.
Identities = 24/92 (26%), Positives = 42/92 (45%), Gaps = 1/92 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ L + +K LN ++ + +V EE+ L G V++ GFG+F +R + R
Sbjct: 5 TKAELADLLFEK-VGLNKREAKDMVEAFFEEIRMQLEQGESVKLSGFGNFQLRDKPQRPG 63
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLNSP 93
R P + I + + V F + LK +
Sbjct: 64 RNPKTGEEIPITARRVVTFHPSQKLKSMVEKN 95
>gi|224370126|ref|YP_002604290.1| Hbp [Desulfobacterium autotrophicum HRM2]
gi|223692843|gb|ACN16126.1| Hbp [Desulfobacterium autotrophicum HRM2]
Length = 89
Score = 88.7 bits (219), Expect = 3e-16, Method: Composition-based stats.
Identities = 29/91 (31%), Positives = 46/91 (50%), Gaps = 2/91 (2%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K LI +++ + +D + V+ +L +T+ALA V + GFG+F +R AR
Sbjct: 1 MNKGDLINKVSEVLN--SKKDAQTAVDCILATVTEALAEKESVTLVGFGTFKTAERKARK 58
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P I + + VP F GK LK+ +
Sbjct: 59 GRNPQTGNEIDIPARFVPKFIPGKALKDAVK 89
>gi|71908284|ref|YP_285871.1| integration host factor subunit alpha [Dechloromonas aromatica
RCB]
gi|123774328|sp|Q47CN0|IHFA2_DECAR RecName: Full=Integration host factor subunit alpha 2;
Short=IHF-alpha 2
gi|71847905|gb|AAZ47401.1| Integration host factor, alpha subunit [Dechloromonas aromatica
RCB]
Length = 100
Score = 88.7 bits (219), Expect = 3e-16, Method: Composition-based stats.
Identities = 26/89 (29%), Positives = 44/89 (49%), Gaps = 1/89 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ L + +K LN ++ + +V EE+ AL G V++ GFG+F +R + R
Sbjct: 4 TKAELADLLFEK-VGLNKREAKDMVEAFFEEIRNALEVGDGVKLSGFGNFQLRDKPQRPG 62
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P + I + + V F A + LK +
Sbjct: 63 RNPKTGQEIPITARRVVTFHASQKLKSDV 91
>gi|224826508|ref|ZP_03699609.1| integration host factor, alpha subunit [Lutiella nitroferrum
2002]
gi|224601109|gb|EEG07291.1| integration host factor, alpha subunit [Lutiella nitroferrum
2002]
Length = 98
Score = 88.7 bits (219), Expect = 3e-16, Method: Composition-based stats.
Identities = 27/89 (30%), Positives = 45/89 (50%), Gaps = 1/89 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ L + K LN ++ + +V EE+ QAL +G V++ GFG+F +R + R
Sbjct: 4 TKAELADLLFDK-VGLNKREAKDMVESFFEEIRQALESGDSVKLSGFGNFQLRDKPQRPG 62
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P + I + + V F A + LK +
Sbjct: 63 RNPKTGEEIPITARRVVTFHASQKLKGMV 91
>gi|326799514|ref|YP_004317333.1| histone family protein DNA-binding protein [Sphingobacterium sp.
21]
gi|326550278|gb|ADZ78663.1| histone family protein DNA-binding protein [Sphingobacterium sp.
21]
Length = 113
Score = 88.7 bits (219), Expect = 3e-16, Method: Composition-based stats.
Identities = 34/96 (35%), Positives = 51/96 (53%), Gaps = 1/96 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI IA + + EK ++ + +T L G V + GFG+F+V +RAAR
Sbjct: 18 MNKADLITKIAA-DAGITKVQAEKALSSITNSVTTTLKKGESVSLIGFGTFTVGQRAARS 76
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDST 96
R P VI ++ VP FR GK+L+E + S +
Sbjct: 77 GRNPNTGAVIKIKATKVPKFRPGKSLREAVASAKTK 112
>gi|296116536|ref|ZP_06835146.1| histone family protein DNA-binding protein [Gluconacetobacter
hansenii ATCC 23769]
gi|295976748|gb|EFG83516.1| histone family protein DNA-binding protein [Gluconacetobacter
hansenii ATCC 23769]
Length = 95
Score = 88.7 bits (219), Expect = 3e-16, Method: Composition-based stats.
Identities = 27/89 (30%), Positives = 43/89 (48%), Gaps = 1/89 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K L+ +A+ N L ++V+ + + +AL+NG V + GFG+F R A
Sbjct: 6 NKQELVAAVAE-NADLAKAKAGEVVDAVFGAIEKALSNGQEVRLVGFGTFVTATRKAAKG 64
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P + I + F+ GKNLKE +
Sbjct: 65 RNPRTGEEIDIPASTSVRFKPGKNLKEAV 93
>gi|284928746|ref|YP_003421268.1| nucleoid DNA-binding protein [cyanobacterium UCYN-A]
gi|284809205|gb|ADB94910.1| bacterial nucleoid DNA-binding protein [cyanobacterium UCYN-A]
Length = 93
Score = 88.7 bits (219), Expect = 3e-16, Method: Composition-based stats.
Identities = 29/90 (32%), Positives = 47/90 (52%), Gaps = 1/90 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K L+ TIA K L ++ +I++ L + + +A+G +V + GFG+F R R R
Sbjct: 1 MNKEDLVNTIAAKTR-LTKKETSQILDALTSTIMETVASGNKVVLVGFGTFEPRDRKERK 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
P + I++ VP F AGK K ++
Sbjct: 60 GMNPQTGQPITIPATTVPAFSAGKVFKGKV 89
>gi|261867382|ref|YP_003255304.1| DNA-binding protein HU [Aggregatibacter actinomycetemcomitans
D11S-1]
gi|293390874|ref|ZP_06635208.1| DNA-binding protein HU [Aggregatibacter actinomycetemcomitans
D7S-1]
gi|261412714|gb|ACX82085.1| DNA-binding protein HU [Aggregatibacter actinomycetemcomitans
D11S-1]
gi|290951408|gb|EFE01527.1| DNA-binding protein HU [Aggregatibacter actinomycetemcomitans
D7S-1]
Length = 90
Score = 88.7 bits (219), Expect = 3e-16, Method: Composition-based stats.
Identities = 31/91 (34%), Positives = 47/91 (51%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI IA + +LN + + + L+ +T +L G V++ GFG+F V R AR
Sbjct: 1 MNKTDLIDAIA-SSAELNKKQAKAALEATLDAITGSLKKGEAVQLIGFGTFKVNARKART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P I + VP F +GK LK+ +
Sbjct: 60 GRNPQTGAEIKIAASKVPAFVSGKALKDAVK 90
>gi|94676703|ref|YP_588518.1| DNA-binding protein HU-alpha [Baumannia cicadellinicola str. Hc
(Homalodisca coagulata)]
gi|94219853|gb|ABF14012.1| DNA-binding protein HU-alpha [Baumannia cicadellinicola str. Hc
(Homalodisca coagulata)]
Length = 94
Score = 88.7 bits (219), Expect = 3e-16, Method: Composition-based stats.
Identities = 31/95 (32%), Positives = 50/95 (52%), Gaps = 1/95 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI I+ K L+ + + L +T++L G V++ GFG+F + R+ R+
Sbjct: 1 MNKTQLIDVISDK-ADLSKAQAKSALESTLAAITESLRGGDTVQLVGFGTFKINHRSERI 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDS 95
R P K I + VP F +GK L++ + S DS
Sbjct: 60 GRNPQTGKEIKIAAVNVPTFISGKTLRKAVKSTDS 94
>gi|294141285|ref|YP_003557263.1| integration host factor subunit alpha [Shewanella violacea DSS12]
gi|293327754|dbj|BAJ02485.1| integration host factor, alpha subunit [Shewanella violacea
DSS12]
Length = 98
Score = 88.7 bits (219), Expect = 3e-16, Method: Composition-based stats.
Identities = 27/95 (28%), Positives = 50/95 (52%), Gaps = 1/95 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ + + + +N + +++V EE+ QAL +G +V++ GFG+F +R + R
Sbjct: 4 TKAEMAEHLFE-TLGINKRVAKEMVETFFEEIRQALESGEQVKLSGFGNFDLRDKNQRPG 62
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDST 96
R P + I + + V FR G+ LK R+ +S
Sbjct: 63 RNPKTGEDIPISARRVVTFRPGQKLKSRVEEANSK 97
>gi|262044127|ref|ZP_06017202.1| integration host factor subunit alpha [Klebsiella pneumoniae
subsp. rhinoscleromatis ATCC 13884]
gi|259038526|gb|EEW39722.1| integration host factor subunit alpha [Klebsiella pneumoniae
subsp. rhinoscleromatis ATCC 13884]
Length = 99
Score = 88.3 bits (218), Expect = 3e-16, Method: Composition-based stats.
Identities = 28/91 (30%), Positives = 51/91 (56%), Gaps = 1/91 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ + + K L+ +D +++V + EE+ +AL NG +V++ GFG+F +R + R
Sbjct: 4 TKAEMSEYLFDKL-GLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPG 62
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P + I + + V FR G+ LK R+ +
Sbjct: 63 RNPKTGEDIPITARRVVTFRPGQKLKSRVEN 93
>gi|254491635|ref|ZP_05104814.1| DNA-binding protein HU [Methylophaga thiooxidans DMS010]
gi|224463113|gb|EEF79383.1| DNA-binding protein HU [Methylophaga thiooxydans DMS010]
Length = 95
Score = 88.3 bits (218), Expect = 3e-16, Method: Composition-based stats.
Identities = 31/90 (34%), Positives = 49/90 (54%), Gaps = 1/90 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K LI ++ + V+ + +T+AL+ G +V + GFG+FSVR+RAAR
Sbjct: 7 NKYELIDA-VAAAADISKAKAAQAVDGVTSAVTKALSKGDQVTLVGFGTFSVRERAARTG 65
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + I + +P F+AGK LK+ +N
Sbjct: 66 RNPRTGEEIKIAAAKIPAFKAGKALKDAVN 95
>gi|296112369|ref|YP_003626307.1| integration host factor subunit alpha [Moraxella catarrhalis RH4]
gi|295920063|gb|ADG60414.1| integration host factor subunit alpha [Moraxella catarrhalis RH4]
gi|326561877|gb|EGE12212.1| integration host factor subunit alpha [Moraxella catarrhalis
7169]
gi|326563312|gb|EGE13579.1| integration host factor subunit alpha [Moraxella catarrhalis
46P47B1]
gi|326563427|gb|EGE13692.1| integration host factor subunit alpha [Moraxella catarrhalis
12P80B1]
gi|326565966|gb|EGE16127.1| integration host factor subunit alpha [Moraxella catarrhalis
103P14B1]
gi|326568900|gb|EGE18969.1| integration host factor subunit alpha [Moraxella catarrhalis BC1]
gi|326569200|gb|EGE19261.1| integration host factor subunit alpha [Moraxella catarrhalis BC7]
gi|326571873|gb|EGE21878.1| integration host factor subunit alpha [Moraxella catarrhalis BC8]
gi|326575385|gb|EGE25310.1| integration host factor subunit alpha [Moraxella catarrhalis
101P30B1]
gi|326576526|gb|EGE26434.1| integration host factor subunit alpha [Moraxella catarrhalis
CO72]
gi|326577997|gb|EGE27861.1| integration host factor subunit alpha [Moraxella catarrhalis
O35E]
Length = 98
Score = 88.3 bits (218), Expect = 3e-16, Method: Composition-based stats.
Identities = 25/94 (26%), Positives = 52/94 (55%), Gaps = 1/94 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ ++ + + L Q K+V+ EE++Q+LA G V++ GFG+F ++ + R
Sbjct: 5 TKADMVDELTIRLR-LTRQQARKLVDGFFEEISQSLAQGHEVKLSGFGNFELKDKKPRPG 63
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDS 95
R P + + ++ + V F+AG+ L+ ++S +
Sbjct: 64 RNPKTGESVPIQARRVVTFKAGQKLRGWIDSQNE 97
>gi|51245274|ref|YP_065158.1| integration host factor, alpha subunit [Desulfotalea psychrophila
LSv54]
gi|50876311|emb|CAG36151.1| related to integration host factor, alpha subunit [Desulfotalea
psychrophila LSv54]
Length = 103
Score = 88.3 bits (218), Expect = 3e-16, Method: Composition-based stats.
Identities = 23/91 (25%), Positives = 45/91 (49%), Gaps = 1/91 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
+ + + + + +IV+ L +M AL G +++ FG+F+VR +A R
Sbjct: 14 TRKEIAEELTGQL-GYSQNICSEIVDSFLGKMKDALIEGESIKLVHFGTFTVRDKAPRTG 72
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P + I++ ++ FR K L+E++N
Sbjct: 73 RNPRTGEPITITKRQAVSFRPSKKLREQVNE 103
>gi|332975691|gb|EGK12576.1| integration host factor subunit alpha [Psychrobacter sp.
1501(2011)]
Length = 105
Score = 88.3 bits (218), Expect = 3e-16, Method: Composition-based stats.
Identities = 21/89 (23%), Positives = 44/89 (49%), Gaps = 1/89 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ +I + K Q +V+ +E+ L G V++ GFG+F ++ + +R
Sbjct: 9 TKADIIDHLVSKF-GFTRQQGRMLVDSFFDEIYDNLVEGRDVKLSGFGNFILKDKKSRPG 67
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P + + + + V F+AG+ L+ ++
Sbjct: 68 RNPKTGEEVQISARRVVTFKAGQKLRRQV 96
>gi|319941885|ref|ZP_08016206.1| histone family protein DNA-binding protein [Sutterella
wadsworthensis 3_1_45B]
gi|319804538|gb|EFW01408.1| histone family protein DNA-binding protein [Sutterella
wadsworthensis 3_1_45B]
Length = 93
Score = 88.3 bits (218), Expect = 3e-16, Method: Composition-based stats.
Identities = 27/94 (28%), Positives = 44/94 (46%), Gaps = 1/94 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M + L+ +A +N + +V++I+ LEE+ A+ G V + GFG+F A R
Sbjct: 1 MNRLELVDRVAARNTA-SKAEVDRIIVSALEEIISAVRCGESVTLIGFGTFKAVDCAPRT 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSPD 94
R P + I + P F G + KE +N
Sbjct: 60 GRNPSTGESIRIPGTKKPKFVPGTSFKELINETK 93
>gi|90406951|ref|ZP_01215142.1| integration host factor alpha subunit [Psychromonas sp. CNPT3]
gi|90311993|gb|EAS40087.1| integration host factor alpha subunit [Psychromonas sp. CNPT3]
Length = 102
Score = 88.3 bits (218), Expect = 3e-16, Method: Composition-based stats.
Identities = 25/98 (25%), Positives = 46/98 (46%), Gaps = 1/98 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ + ++ L+ ++ ++ V EE+ L +G V+I GFG F ++ + R
Sbjct: 4 TKAEISIHLSD-TIGLSKREAKEFVESFFEEIKATLESGEAVKISGFGGFELKDKGERPG 62
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDSTLSN 99
R P + I + + V FRAG+ LKE + +
Sbjct: 63 RNPKTGEDIPIAARRVVTFRAGQKLKELVETNLPKTDE 100
>gi|305666663|ref|YP_003862950.1| DNA-binding protein HU-beta [Maribacter sp. HTCC2170]
gi|88707468|gb|EAQ99712.1| DNA-binding protein HU-beta (NS1) (HU-1) [Maribacter sp.
HTCC2170]
Length = 90
Score = 88.3 bits (218), Expect = 3e-16, Method: Composition-based stats.
Identities = 31/91 (34%), Positives = 47/91 (51%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI +A + + +K + L + +L G RV + GFGS+SV +R AR
Sbjct: 1 MNKTELIDAMAA-DAGITKAAAKKSLESFLGNVEGSLKKGDRVSLVGFGSWSVSRRNARE 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P K I + K V F+AG +L + +N
Sbjct: 60 GRNPSTGKTIQIAAKNVVKFKAGADLGKAVN 90
>gi|237711513|ref|ZP_04541994.1| DNA-binding protein HU-beta [Bacteroides sp. 9_1_42FAA]
gi|237726030|ref|ZP_04556511.1| DNA-binding protein HU-beta [Bacteroides sp. D4]
gi|265752938|ref|ZP_06088507.1| DNA-binding protein HU-beta [Bacteroides sp. 3_1_33FAA]
gi|229435838|gb|EEO45915.1| DNA-binding protein HU-beta [Bacteroides dorei 5_1_36/D4]
gi|229454208|gb|EEO59929.1| DNA-binding protein HU-beta [Bacteroides sp. 9_1_42FAA]
gi|263236124|gb|EEZ21619.1| DNA-binding protein HU-beta [Bacteroides sp. 3_1_33FAA]
Length = 90
Score = 88.3 bits (218), Expect = 3e-16, Method: Composition-based stats.
Identities = 30/91 (32%), Positives = 49/91 (53%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI +A + L+ D +K V + +T+AL G +V + GFG+FSV +R+AR
Sbjct: 1 MNKADLISAVAAE-AGLSKVDAKKAVEAFVSTVTKALKEGDKVSLIGFGTFSVAERSART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
P + I++ K V F+ G L + +
Sbjct: 60 GINPSTKATITIPAKKVTKFKPGAELADAIK 90
>gi|227499519|ref|ZP_03929626.1| DNA-binding protein HU [Anaerococcus tetradius ATCC 35098]
gi|227218398|gb|EEI83649.1| DNA-binding protein HU [Anaerococcus tetradius ATCC 35098]
Length = 92
Score = 88.3 bits (218), Expect = 3e-16, Method: Composition-based stats.
Identities = 37/93 (39%), Positives = 54/93 (58%), Gaps = 2/93 (2%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS L+ I++K+ L + EK +N LE +T++L G +V++ GFG+F VR R AR
Sbjct: 1 MNKSELLINISEKS-GLKKSEAEKALNAFLETVTESLIAGDKVQLVGFGTFEVRDRKARE 59
Query: 61 ARAPLAQKV-ISVEEKMVPFFRAGKNLKERLNS 92
R P + I + P F+AGK LKE +N
Sbjct: 60 GRNPRKPEEVIQIPASKAPVFKAGKTLKEAVNK 92
>gi|209965676|ref|YP_002298591.1| DNA-binding protein HupB [Rhodospirillum centenum SW]
gi|209959142|gb|ACI99778.1| DNA-binding protein HupB [Rhodospirillum centenum SW]
Length = 91
Score = 88.3 bits (218), Expect = 3e-16, Method: Composition-based stats.
Identities = 33/91 (36%), Positives = 47/91 (51%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ L +A + + K V+ + + + QALA G V + GFG+FSV +RAAR
Sbjct: 1 MQKADLAEAVA-QATGASKAAAAKTVDAIFDAIQQALAKGEDVRLTGFGTFSVSERAARE 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P I + P F AGK LK+ +N
Sbjct: 60 GRNPQTGATIQIAASKQPKFTAGKALKDAVN 90
>gi|319942541|ref|ZP_08016851.1| integration host factor subunit beta [Sutterella wadsworthensis
3_1_45B]
gi|319803944|gb|EFW00862.1| integration host factor subunit beta [Sutterella wadsworthensis
3_1_45B]
Length = 102
Score = 88.3 bits (218), Expect = 3e-16, Method: Composition-based stats.
Identities = 36/98 (36%), Positives = 58/98 (59%), Gaps = 1/98 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS L+ + + P +D ++++ M+Q L GGR+EIRGFGSF ++ R R+
Sbjct: 5 MTKSELLAELYGRLPTFRERDCMDAAGVIIDTMSQTLVEGGRIEIRGFGSFGLKYRPERV 64
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN-SPDSTL 97
R P ++V + FF+AGK+L++R++ S DS L
Sbjct: 65 GRNPQDGSAVAVRARYTVFFKAGKDLRQRVDASRDSKL 102
>gi|319944338|ref|ZP_08018612.1| DNA-binding protein HU-beta [Lautropia mirabilis ATCC 51599]
gi|319742299|gb|EFV94712.1| DNA-binding protein HU-beta [Lautropia mirabilis ATCC 51599]
Length = 93
Score = 88.3 bits (218), Expect = 3e-16, Method: Composition-based stats.
Identities = 29/92 (31%), Positives = 45/92 (48%), Gaps = 1/92 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI TI+ + ++ E+ + + + +A+A G RV + GFG+F KRA+R
Sbjct: 1 MNKSELIDTISSE-ADISKAAAERALTSAMNAIMKAVAEGDRVTLVGFGTFHASKRASRT 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
P + I + VP F G K+ N
Sbjct: 60 GLNPRTGEKIEIAAANVPKFTPGAAFKDAANK 91
>gi|92115364|ref|YP_575292.1| histone-like DNA-binding protein [Chromohalobacter salexigens DSM
3043]
gi|91798454|gb|ABE60593.1| histone-like DNA-binding protein [Chromohalobacter salexigens DSM
3043]
Length = 90
Score = 88.3 bits (218), Expect = 3e-16, Method: Composition-based stats.
Identities = 29/91 (31%), Positives = 52/91 (57%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K L IA++ L+ +++N++L+E+T ++ G V + GFG+F+VR+RAAR
Sbjct: 1 MRKPELAAAIAER-ADLSKDKASQVLNVILDEITGTVSKGQDVSLIGFGAFTVRERAART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
+ P K +++ F+ GK LK+ +
Sbjct: 60 GKNPQTGKPLTIPASKTVAFKPGKALKDAVK 90
>gi|127513142|ref|YP_001094339.1| integration host factor, alpha subunit [Shewanella loihica PV-4]
gi|166918526|sp|A3QF32|IHFA_SHELP RecName: Full=Integration host factor subunit alpha;
Short=IHF-alpha
gi|126638437|gb|ABO24080.1| integration host factor, alpha subunit [Shewanella loihica PV-4]
Length = 98
Score = 88.3 bits (218), Expect = 3e-16, Method: Composition-based stats.
Identities = 27/89 (30%), Positives = 48/89 (53%), Gaps = 1/89 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ + + + +N + +++V EE+ QAL NG +V++ GFG+F +R + R
Sbjct: 4 TKAEMAEHLFE-TLGINKRVAKEMVEAFFEEIRQALENGEQVKLSGFGNFDLRDKNQRPG 62
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P + I + + V FR G+ LK R+
Sbjct: 63 RNPKTGEDIPISARRVVTFRPGQKLKSRV 91
>gi|303242803|ref|ZP_07329270.1| histone family protein DNA-binding protein [Acetivibrio
cellulolyticus CD2]
gi|302589653|gb|EFL59434.1| histone family protein DNA-binding protein [Acetivibrio
cellulolyticus CD2]
Length = 92
Score = 88.3 bits (218), Expect = 3e-16, Method: Composition-based stats.
Identities = 36/93 (38%), Positives = 55/93 (59%), Gaps = 1/93 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ L+ +IA K+ LN ++ E +N L+ + + L G +V + GFG+F VR RAAR
Sbjct: 1 MNKTELVNSIASKS-GLNKKNSEAALNALISSVEETLEKGDKVVLVGFGTFEVRNRAARK 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSP 93
R P +K I++ P F+AGK LK+ +N
Sbjct: 60 GRNPQTKKEITIPASKAPVFKAGKGLKDIINKK 92
>gi|34496809|ref|NP_901024.1| integration host factor subunit alpha [Chromobacterium violaceum
ATCC 12472]
gi|81711870|sp|Q7NYC0|IHFA_CHRVO RecName: Full=Integration host factor subunit alpha;
Short=IHF-alpha
gi|34102664|gb|AAQ59029.1| integration host factor alpha-subunit [Chromobacterium violaceum
ATCC 12472]
Length = 100
Score = 88.3 bits (218), Expect = 3e-16, Method: Composition-based stats.
Identities = 25/89 (28%), Positives = 44/89 (49%), Gaps = 1/89 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ L + + LN ++ + +V EE+ AL +G V++ GFG+F +R + R
Sbjct: 4 TKAELADLLFDQ-VGLNKREAKDMVESFFEEIRLALESGDSVKLSGFGNFQLRDKPQRPG 62
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P + I + + V F A + LK +
Sbjct: 63 RNPKTGEEIPITARRVVTFHASQKLKGMV 91
>gi|229014688|ref|ZP_04171798.1| DNA-binding protein HU [Bacillus mycoides DSM 2048]
gi|228746594|gb|EEL96487.1| DNA-binding protein HU [Bacillus mycoides DSM 2048]
Length = 93
Score = 88.3 bits (218), Expect = 3e-16, Method: Composition-based stats.
Identities = 33/91 (36%), Positives = 51/91 (56%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ L +A+K +L ++ +L +T ALAN +V+I GFG+F VR+R+AR
Sbjct: 4 MNKTELTKMVAEK-AELTQKEAAAATQAVLNAITNALANEDKVQILGFGTFEVRERSART 62
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + + + P F+AGK LKE +
Sbjct: 63 GRNPQTGEEMQIAASKAPAFKAGKELKEAVK 93
>gi|254429814|ref|ZP_05043521.1| integration host factor, alpha subunit [Alcanivorax sp. DG881]
gi|196195983|gb|EDX90942.1| integration host factor, alpha subunit [Alcanivorax sp. DG881]
Length = 100
Score = 88.3 bits (218), Expect = 3e-16, Method: Composition-based stats.
Identities = 28/97 (28%), Positives = 53/97 (54%), Gaps = 1/97 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ + + ++ LN ++ +++V M EE+ +L N V++ GFG+F +R ++ R
Sbjct: 5 TKADMAERLFEEL-GLNKREAKEMVEMFFEEIRHSLENNIPVKLSGFGNFDLRDKSERPG 63
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDSTLS 98
R P + I + + V FR G+ LK+R+ + T S
Sbjct: 64 RNPKTGEEIPITARRVVTFRPGQKLKQRVEAYAGTKS 100
>gi|149376912|ref|ZP_01894667.1| Bacterial nucleoid DNA-binding protein [Marinobacter algicola
DG893]
gi|149358804|gb|EDM47273.1| Bacterial nucleoid DNA-binding protein [Marinobacter algicola
DG893]
Length = 90
Score = 88.3 bits (218), Expect = 3e-16, Method: Composition-based stats.
Identities = 26/90 (28%), Positives = 43/90 (47%), Gaps = 1/90 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K L +A K L+ +++ ++++ A A G + GFG+F++R R AR
Sbjct: 1 MRKPELAAAVADKT-GLSRDKASEVITAFTDQISAAAARGEDTTLIGFGTFNIRSREARD 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P I + F+AGK LK+ +
Sbjct: 60 GRNPQTGATIKIPASKTVGFKAGKALKDSI 89
>gi|77360230|ref|YP_339805.1| DNA-binding protein [Pseudoalteromonas haloplanktis TAC125]
gi|76875141|emb|CAI86362.1| DNA-binding protein HU-alpha (HU-2), likely to play a role in DNA
replication and in rpo translation [Pseudoalteromonas
haloplanktis TAC125]
Length = 89
Score = 88.3 bits (218), Expect = 3e-16, Method: Composition-based stats.
Identities = 30/90 (33%), Positives = 51/90 (56%), Gaps = 1/90 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ L+ +A+K+ +L +D + + L + +T++LA G +V+I GFG+F++ AR
Sbjct: 1 MNKAQLVTAMAQKS-ELTKKDAQAALTSLQKVITKSLAEGDQVQINGFGTFALSYYPART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P I +E F+A K LK+ L
Sbjct: 60 GRNPQTGASIEIEGANKAVFKASKALKDVL 89
>gi|259046865|ref|ZP_05737266.1| DNA-binding protein HU [Granulicatella adiacens ATCC 49175]
gi|259036488|gb|EEW37743.1| DNA-binding protein HU [Granulicatella adiacens ATCC 49175]
Length = 92
Score = 88.3 bits (218), Expect = 3e-16, Method: Composition-based stats.
Identities = 37/91 (40%), Positives = 54/91 (59%), Gaps = 1/91 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ L+ +AKK +L +DV V L E + +AL G +V++ GFG+F VR+RAAR
Sbjct: 3 NKAELVDRVAKKT-QLTKKDVSATVEALFETIQEALKAGEKVQVIGFGNFEVRERAARKG 61
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P K I ++ VP F+AGK LK+ +
Sbjct: 62 RNPQTGKEIKIKASKVPAFKAGKALKDAVKK 92
>gi|302669370|ref|YP_003832520.1| DNA-binding protein [Butyrivibrio proteoclasticus B316]
gi|302397034|gb|ADL35938.1| DNA-binding protein [Butyrivibrio proteoclasticus B316]
Length = 94
Score = 88.3 bits (218), Expect = 3e-16, Method: Composition-based stats.
Identities = 35/95 (36%), Positives = 52/95 (54%), Gaps = 1/95 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ L+ IAK+ L+ +D EK V E +++ L G+V++ GFG+F KRAAR
Sbjct: 1 MNKTELVDAIAKET-GLSKKDSEKAVKAFTEAVSKELKKKGKVQLVGFGTFETAKRAART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDS 95
+ P I + VP F+AGK LK+ +N
Sbjct: 60 GKNPQTGAAIKIPAATVPKFKAGKALKDAVNGKKK 94
>gi|294787803|ref|ZP_06753047.1| integration host factor, alpha subunit [Simonsiella muelleri ATCC
29453]
gi|294484096|gb|EFG31779.1| integration host factor, alpha subunit [Simonsiella muelleri ATCC
29453]
Length = 100
Score = 88.3 bits (218), Expect = 3e-16, Method: Composition-based stats.
Identities = 24/89 (26%), Positives = 45/89 (50%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ L + +K ++ D ++IV + EE+ L +G ++I GFG+F +R + R
Sbjct: 4 TKAELADILVEKVSSVSKNDAKEIVELFFEEIRTTLESGEEIKISGFGNFQLRDKPQRPG 63
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P + + + + V F A + LK +
Sbjct: 64 RNPKTGEEVPITARRVVTFHASQKLKGMV 92
>gi|113475301|ref|YP_721362.1| nucleoid protein Hbs [Trichodesmium erythraeum IMS101]
gi|110166349|gb|ABG50889.1| bacterial nucleoid protein Hbs [Trichodesmium erythraeum IMS101]
Length = 95
Score = 88.3 bits (218), Expect = 3e-16, Method: Composition-based stats.
Identities = 32/96 (33%), Positives = 52/96 (54%), Gaps = 1/96 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K L+ I+KK ++ + + +++ LE + A+A+G +V + GFGSF R+R AR
Sbjct: 1 MNKGELVDEISKK-AEVTKKQADAVLSAALEAIMDAVASGDKVTLVGFGSFESRERKARE 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDST 96
R P + + E VP F AGK+ KE + +
Sbjct: 60 GRNPKTGDKMEIPETTVPAFSAGKSFKELVAERNGK 95
>gi|332967814|gb|EGK06913.1| integration host factor subunit alpha [Kingella kingae ATCC
23330]
Length = 102
Score = 88.3 bits (218), Expect = 3e-16, Method: Composition-based stats.
Identities = 26/89 (29%), Positives = 44/89 (49%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ L + K L D ++IV + EE+ LA G ++I GFG+F +R + R
Sbjct: 4 TKAELADILVDKVSNLGKNDAKEIVELFFEEIRTTLAQGEEIKISGFGNFQLRDKPQRPG 63
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P + +++ + V F A + LK +
Sbjct: 64 RNPKTGEEVAITARRVVTFHASQKLKGMV 92
>gi|58038600|ref|YP_190564.1| integration host factor alpha-subunit [Gluconobacter oxydans
621H]
gi|58001014|gb|AAW59908.1| Integration host factor alpha-subunit [Gluconobacter oxydans
621H]
Length = 108
Score = 88.3 bits (218), Expect = 3e-16, Method: Composition-based stats.
Identities = 26/94 (27%), Positives = 50/94 (53%), Gaps = 1/94 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
+++L+ + + L+ D I+ LL ++ L G V++ GFG+FSVR++ R+
Sbjct: 5 TRANLVEHLYSR-VGLSRHDSSMILESLLGVISDRLEAGESVKLSGFGTFSVRQKGERIG 63
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDS 95
R P + + + V FR + L++R+N D+
Sbjct: 64 RNPKTGVEVPILPRAVLVFRPSQLLRDRMNGSDN 97
>gi|254418548|ref|ZP_05032272.1| DNA-binding protein HU [Brevundimonas sp. BAL3]
gi|196184725|gb|EDX79701.1| DNA-binding protein HU [Brevundimonas sp. BAL3]
Length = 91
Score = 88.3 bits (218), Expect = 3e-16, Method: Composition-based stats.
Identities = 27/91 (29%), Positives = 44/91 (48%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LIG +A ++ + + + + +AL G V++ GFGSF+ R A +
Sbjct: 1 MTKAELIGRMATA-ANISRDQAKTALEAFTDGVVEALTQGRDVKLIGFGSFTPVDRKAGV 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
AR P + ++ FR G+ LK LN
Sbjct: 60 ARNPQTGQAVARPASRTARFRPGEGLKSALN 90
>gi|197118442|ref|YP_002138869.1| integration host factor subunit beta [Geobacter bemidjiensis Bem]
gi|197087802|gb|ACH39073.1| integration host factor, beta subunit [Geobacter bemidjiensis
Bem]
Length = 91
Score = 88.3 bits (218), Expect = 3e-16, Method: Composition-based stats.
Identities = 40/90 (44%), Positives = 58/90 (64%), Gaps = 1/90 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI ++A K L+++ E++VN + MT AL +G R+EIRG GSF V++ A
Sbjct: 1 MNKSELIESLAAKKT-LSFKKAEEVVNAVFASMTDALLSGDRIEIRGVGSFVVKEYDAYT 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P + ISV+ K +PFF+ GK LKE++
Sbjct: 60 GRNPKTGESISVKAKKLPFFKVGKELKEKV 89
>gi|89069686|ref|ZP_01157023.1| integration host factor, alpha subunit [Oceanicola granulosus
HTCC2516]
gi|89044766|gb|EAR50872.1| integration host factor, alpha subunit [Oceanicola granulosus
HTCC2516]
Length = 101
Score = 88.3 bits (218), Expect = 3e-16, Method: Composition-based stats.
Identities = 26/89 (29%), Positives = 47/89 (52%), Gaps = 1/89 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
+ L + + L+ D ++V +L ++ AL G V+I FG+FSVR++AAR+
Sbjct: 7 TRMDLAEAVHAE-VGLSRNDSAELVESILTHVSDALVRGETVKISSFGTFSVREKAARVG 65
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P + + + + V FR +K+R+
Sbjct: 66 RNPKTGEEVPIHPRRVLTFRPSHLMKDRV 94
>gi|189500914|ref|YP_001960384.1| histone family protein DNA-binding protein [Chlorobium
phaeobacteroides BS1]
gi|189496355|gb|ACE04903.1| histone family protein DNA-binding protein [Chlorobium
phaeobacteroides BS1]
Length = 99
Score = 88.3 bits (218), Expect = 3e-16, Method: Composition-based stats.
Identities = 33/89 (37%), Positives = 52/89 (58%), Gaps = 1/89 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ L+ TI+ + L + E +V+ L + + +L G R+EIRGFGSF++R + RLA
Sbjct: 6 TKADLVNTISHRT-GLTKHETESVVDCLFDSIIDSLKAGKRIEIRGFGSFNIRYKNERLA 64
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P + +SV+ K VP F+ K K +
Sbjct: 65 RNPRTGEKVSVDAKNVPTFKISKEFKSAV 93
>gi|117926190|ref|YP_866807.1| histone family protein DNA-binding protein [Magnetococcus sp.
MC-1]
gi|117609946|gb|ABK45401.1| histone family protein DNA-binding protein [Magnetococcus sp.
MC-1]
Length = 91
Score = 88.3 bits (218), Expect = 3e-16, Method: Composition-based stats.
Identities = 36/91 (39%), Positives = 54/91 (59%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI TIA + L Q +V+M+ E+ +A+A G RVE+RGFG F R R R
Sbjct: 1 MTKSELILTIAAQ-KGLTKQAAAMVVDMVFNEIGKAMAKGERVELRGFGVFEPRARKPRA 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
AR P + ++VE K F+ G ++++R++
Sbjct: 60 ARNPKTGEKVAVESKTAVHFKPGLDMRKRVD 90
>gi|94495938|ref|ZP_01302517.1| integration host factor, alpha subunit [Sphingomonas sp. SKA58]
gi|94424630|gb|EAT09652.1| integration host factor, alpha subunit [Sphingomonas sp. SKA58]
Length = 96
Score = 88.3 bits (218), Expect = 3e-16, Method: Composition-based stats.
Identities = 23/89 (25%), Positives = 48/89 (53%), Gaps = 1/89 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
++ L ++ ++ L+ + +V +L+ M+ AL G V+I FG+F +R + R+
Sbjct: 8 TRADLAESL-NRHVGLSRAEAAALVESILDHMSDALERGENVKISSFGTFVLRDKTQRMG 66
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P + +E + V FRA + +++R+
Sbjct: 67 RNPKTGVEVPIEPRRVLTFRASQTMRDRV 95
>gi|313113523|ref|ZP_07799112.1| DNA-binding protein HU [Faecalibacterium cf. prausnitzii KLE1255]
gi|310624250|gb|EFQ07616.1| DNA-binding protein HU [Faecalibacterium cf. prausnitzii KLE1255]
Length = 89
Score = 88.3 bits (218), Expect = 3e-16, Method: Composition-based stats.
Identities = 28/90 (31%), Positives = 53/90 (58%), Gaps = 1/90 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI +A +++ + E+ VN + E +++A++ G ++ I GFG+F +R+RA R
Sbjct: 1 MTKTDLIAQVAANT-EMSKKSAEQAVNAVFEALSKAMSEGEKITISGFGTFEMRERAERQ 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
P ++ I++ F+ GK+LK+ L
Sbjct: 60 GINPRTREPITIAASRSIVFKPGKSLKDTL 89
>gi|241764284|ref|ZP_04762314.1| histone family protein DNA-binding protein [Acidovorax delafieldii
2AN]
gi|241366353|gb|EER60883.1| histone family protein DNA-binding protein [Acidovorax delafieldii
2AN]
Length = 116
Score = 88.3 bits (218), Expect = 3e-16, Method: Composition-based stats.
Identities = 24/89 (26%), Positives = 47/89 (52%), Gaps = 1/89 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ L + + LN ++ + +++ + + Q L +G V++ GFG+F +R +A R
Sbjct: 25 TKAQLADLLFDQI-GLNKRESKDMIDAFFDLIAQRLVDGKDVKLSGFGNFQIRTKAPRPG 83
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P + I ++ + V F A LKE++
Sbjct: 84 RNPRTGEAIPIQARRVVTFHASSKLKEQI 112
>gi|1093154|prf||2103146A HU protein
Length = 94
Score = 88.3 bits (218), Expect = 3e-16, Method: Composition-based stats.
Identities = 28/90 (31%), Positives = 50/90 (55%), Gaps = 1/90 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K L+ +A+K + + + ++ LE + +A+++G +V + GFGSF R+R AR
Sbjct: 1 MNKGELVDAVAEK-ASVTKKQADAVLTAALETIIEAVSSGDKVTLVGFGSFESRERKARE 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P + + + VP F AGK +E++
Sbjct: 60 GRNPKTNEKMEIPATRVPAFSAGKLEREKV 89
>gi|260593420|ref|ZP_05858878.1| DNA-binding protein HU-beta [Prevotella veroralis F0319]
gi|260534696|gb|EEX17313.1| DNA-binding protein HU-beta [Prevotella veroralis F0319]
Length = 91
Score = 88.3 bits (218), Expect = 4e-16, Method: Composition-based stats.
Identities = 30/92 (32%), Positives = 48/92 (52%), Gaps = 1/92 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI IA + L+ D +K ++ E + AL G +V++ GFG+FS +R A
Sbjct: 1 MNKTELIEKIAA-SANLSKADAKKALDATTEAIKDALVAGDKVQLVGFGTFSTNERPAHE 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
P ++ I + K V F+AG L + +N
Sbjct: 60 GMNPATKQKIQIPAKKVAKFKAGAELSDAVNK 91
>gi|206890650|ref|YP_002249614.1| DNA-binding protein HU 1 [Thermodesulfovibrio yellowstonii DSM
11347]
gi|206742588|gb|ACI21645.1| DNA-binding protein HU 1 [Thermodesulfovibrio yellowstonii DSM
11347]
Length = 90
Score = 88.3 bits (218), Expect = 4e-16, Method: Composition-based stats.
Identities = 35/91 (38%), Positives = 50/91 (54%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ L+ IA K +L + K ++ +E + +AL G +V + GFGSF V KR AR
Sbjct: 1 MTKAELVSKIASK-AELTKAEAAKALDATIEAVKEALKKGDKVTLVGFGSFYVSKRKARK 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + I + VP F AGK+LKE +
Sbjct: 60 GRNPRTGQEIKIPATKVPKFTAGKSLKEAVK 90
>gi|315635141|ref|ZP_07890419.1| DNA-binding protein HU [Aggregatibacter segnis ATCC 33393]
gi|315476103|gb|EFU66857.1| DNA-binding protein HU [Aggregatibacter segnis ATCC 33393]
Length = 90
Score = 88.3 bits (218), Expect = 4e-16, Method: Composition-based stats.
Identities = 31/91 (34%), Positives = 46/91 (50%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI IA +LN + + + L+ +T +L G V++ GFG+F V R AR
Sbjct: 1 MNKTDLIDAIASA-AELNKKQAKAALEATLDAITGSLKKGEAVQLIGFGTFKVNARKART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P I + VP F +GK LK+ +
Sbjct: 60 GRNPQTGAEIKIAASKVPAFVSGKALKDAVK 90
>gi|303248758|ref|ZP_07335010.1| histone family protein DNA-binding protein [Desulfovibrio
fructosovorans JJ]
gi|302489845|gb|EFL49774.1| histone family protein DNA-binding protein [Desulfovibrio
fructosovorans JJ]
Length = 91
Score = 88.3 bits (218), Expect = 4e-16, Method: Composition-based stats.
Identities = 25/91 (27%), Positives = 41/91 (45%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ +I I + K+++ +L + +L G + + GFG+F V +RAAR
Sbjct: 1 MAKTDIIAKIQANAGIATKAEAGKVLDAVLAAIQDSLVAGEALTLTGFGTFKVSERAART 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P I + F GK LK+ +
Sbjct: 61 GRDPRTGNAIDIPASKAVRFTPGKTLKDAVK 91
>gi|291614503|ref|YP_003524660.1| histone family protein DNA-binding protein [Sideroxydans
lithotrophicus ES-1]
gi|291584615|gb|ADE12273.1| histone family protein DNA-binding protein [Sideroxydans
lithotrophicus ES-1]
Length = 94
Score = 88.3 bits (218), Expect = 4e-16, Method: Composition-based stats.
Identities = 32/95 (33%), Positives = 49/95 (51%), Gaps = 1/95 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M + LI +A+K + D ++ + L++ +T L G V + GFG+F VRKRAAR
Sbjct: 1 MNRKELIDALAEKT-GSSKADADRNIAALIDIVTATLKKGDNVALVGFGTFEVRKRAART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDS 95
R P + ++ VP F+AG LK +N
Sbjct: 60 GRNPATGAELKIKASKVPAFKAGATLKATVNGTKK 94
>gi|222055876|ref|YP_002538238.1| histone family protein DNA-binding protein [Geobacter sp. FRC-32]
gi|221565165|gb|ACM21137.1| histone family protein DNA-binding protein [Geobacter sp. FRC-32]
Length = 91
Score = 88.3 bits (218), Expect = 4e-16, Method: Composition-based stats.
Identities = 41/90 (45%), Positives = 58/90 (64%), Gaps = 1/90 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI +A K L+Y+ E+I+N + E MT AL G R+EIRGFGSF V+ + +
Sbjct: 1 MNKSELIEALAAK-KGLSYKKAEEIINSIFESMTNALLTGDRIEIRGFGSFVVKSYQSYM 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P + I+V+ K +PFF+ GK LKE++
Sbjct: 60 GRNPKTGESIAVKSKKLPFFKVGKELKEKV 89
>gi|317056256|ref|YP_004104723.1| histone family protein DNA-binding protein [Ruminococcus albus 7]
gi|315448525|gb|ADU22089.1| histone family protein DNA-binding protein [Ruminococcus albus 7]
Length = 92
Score = 88.3 bits (218), Expect = 4e-16, Method: Composition-based stats.
Identities = 34/93 (36%), Positives = 56/93 (60%), Gaps = 1/93 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI IA+K + ++ +K + +L+ +T AL NG +V + GFG+F VR RAA++
Sbjct: 1 MNKAELINVIAEK-GGYSKKEADKALATVLDSITGALENGEKVTLVGFGTFEVRDRAAKV 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSP 93
A P+ + + V + VP F+AG LK ++
Sbjct: 60 AMNPVTKAPVDVPARKVPAFKAGSALKAVVDKK 92
>gi|290957139|ref|YP_003488321.1| histone-like DNA binding protein [Streptomyces scabiei 87.22]
gi|260646665|emb|CBG69762.1| putative histone-like DNA binding protein [Streptomyces scabiei
87.22]
Length = 217
Score = 88.3 bits (218), Expect = 4e-16, Method: Composition-based stats.
Identities = 32/95 (33%), Positives = 49/95 (51%), Gaps = 2/95 (2%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ L+ IA K Q V+ +L+ + +A+ G RV + GFGSF R AR
Sbjct: 1 MNKAQLVEAIADKVGG--RQQAADAVDAVLDAIVRAVVAGDRVSVTGFGSFEKVDRPARY 58
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDS 95
AR P + + V++ VP FRAG+ K+ ++
Sbjct: 59 ARNPQTGERVRVKKTSVPRFRAGQGFKDLVSGSKK 93
>gi|296270760|ref|YP_003653392.1| histone family protein DNA-binding protein [Thermobispora bispora
DSM 43833]
gi|296093547|gb|ADG89499.1| histone family protein DNA-binding protein [Thermobispora bispora
DSM 43833]
Length = 98
Score = 87.9 bits (217), Expect = 4e-16, Method: Composition-based stats.
Identities = 34/92 (36%), Positives = 47/92 (51%), Gaps = 2/92 (2%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K L+ IA + + + VN +LE + A+A G +V I GFG+F + + AR
Sbjct: 1 MNKRELVEAIADRVGD--KKTATEAVNAVLETIQNAVARGDKVSITGFGAFEMVHKPART 58
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
AR P I VEE P FR G KE +N+
Sbjct: 59 ARNPSTGAPIKVEESWAPRFRPGAEFKELVNA 90
>gi|120611517|ref|YP_971195.1| integration host factor subunit alpha [Acidovorax citrulli AAC00-1]
gi|120589981|gb|ABM33421.1| histone family protein DNA-binding protein [Acidovorax citrulli
AAC00-1]
Length = 122
Score = 87.9 bits (217), Expect = 4e-16, Method: Composition-based stats.
Identities = 27/97 (27%), Positives = 51/97 (52%), Gaps = 1/97 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ L + + LN ++ + +++ + + Q L +G V+I GFG+F +R +A R
Sbjct: 27 TKAQLAELLFDQI-GLNKRESKDMIDAFFDLIAQRLVDGQDVKISGFGNFQIRTKAPRPG 85
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDSTLS 98
R P + I ++ + V F A LKE++ S S+ +
Sbjct: 86 RNPRTGEAIPIQARRVVTFHASTKLKEQIQSGGSSAA 122
>gi|84387194|ref|ZP_00990216.1| integration host factor alpha subunit [Vibrio splendidus 12B01]
gi|86146820|ref|ZP_01065140.1| integration host factor alpha subunit [Vibrio sp. MED222]
gi|148975883|ref|ZP_01812672.1| integration host factor subunit alpha [Vibrionales bacterium
SWAT-3]
gi|218709710|ref|YP_002417331.1| Integration host factor, alpha subunit [Vibrio splendidus LGP32]
gi|254803524|sp|B7VPF6|IHFA_VIBSL RecName: Full=Integration host factor subunit alpha;
Short=IHF-alpha
gi|84378055|gb|EAP94916.1| integration host factor alpha subunit [Vibrio splendidus 12B01]
gi|85835470|gb|EAQ53608.1| integration host factor alpha subunit [Vibrio sp. MED222]
gi|145964628|gb|EDK29881.1| integration host factor subunit alpha [Vibrionales bacterium
SWAT-3]
gi|218322729|emb|CAV18905.1| Integration host factor, alpha subunit [Vibrio splendidus LGP32]
Length = 98
Score = 87.9 bits (217), Expect = 4e-16, Method: Composition-based stats.
Identities = 27/93 (29%), Positives = 50/93 (53%), Gaps = 1/93 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ L + + + +D ++ V + EE+ +AL NG +V++ GFG+F +R++ R
Sbjct: 4 TKADLAENLFE-TLGYSKRDAKETVEVFFEEVRKALENGEQVKLSGFGNFDLREKNERPG 62
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLNSPD 94
R P + I + + V FR G+ LK R+ +
Sbjct: 63 RNPKTGEDIPISARRVVTFRPGQKLKARVENIK 95
>gi|95930290|ref|ZP_01313028.1| histone-like DNA-binding protein [Desulfuromonas acetoxidans DSM
684]
gi|95133753|gb|EAT15414.1| histone-like DNA-binding protein [Desulfuromonas acetoxidans DSM
684]
Length = 93
Score = 87.9 bits (217), Expect = 4e-16, Method: Composition-based stats.
Identities = 26/94 (27%), Positives = 49/94 (52%), Gaps = 1/94 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ L+ + K + ++ +IV + E M L +G +++I GFG+F V+++A R
Sbjct: 1 MTKADLVENVYFKT-GFSKKESAEIVETVFELMKDTLEDGDKIKIAGFGNFVVKQKATRR 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSPD 94
R P + I + + + F+ + LK +N D
Sbjct: 60 GRNPQTGEEIEISSRKILTFKPSQVLKTAINEGD 93
>gi|218134789|ref|ZP_03463593.1| hypothetical protein BACPEC_02692 [Bacteroides pectinophilus ATCC
43243]
gi|217990174|gb|EEC56185.1| hypothetical protein BACPEC_02692 [Bacteroides pectinophilus ATCC
43243]
Length = 126
Score = 87.9 bits (217), Expect = 4e-16, Method: Composition-based stats.
Identities = 30/92 (32%), Positives = 53/92 (57%), Gaps = 1/92 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ L+ +++K+ +L +D EK + ++ + + L ++++ GFG+F V KRAAR
Sbjct: 36 MNKTELVAAMSEKS-ELTKKDSEKALKAFMDVVAEELKKDEKIQLVGFGTFEVAKRAART 94
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
+ P K I + P F+AGK LK+ +N
Sbjct: 95 GKNPQTGKAIKIPATKAPKFKAGKALKDTVNK 126
>gi|159474730|ref|XP_001695478.1| predicted protein [Chlamydomonas reinhardtii]
gi|158275961|gb|EDP01736.1| predicted protein [Chlamydomonas reinhardtii]
Length = 87
Score = 87.9 bits (217), Expect = 4e-16, Method: Composition-based stats.
Identities = 32/88 (36%), Positives = 45/88 (51%), Gaps = 1/88 (1%)
Query: 3 KSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLAR 62
K+ L+ IA + L K + L+ + AL NG RV I GFG+F VR+RAAR R
Sbjct: 1 KAKLVEAIATE-VGLTKDVAAKAFDSLIGGIEDALINGDRVTIVGFGTFEVRERAARQGR 59
Query: 63 APLAQKVISVEEKMVPFFRAGKNLKERL 90
P V+ + P F+A LK+ +
Sbjct: 60 NPSTGAVLQIAASKAPVFKASVGLKDAV 87
>gi|188581269|ref|YP_001924714.1| histone family protein DNA-binding protein [Methylobacterium
populi BJ001]
gi|226709733|sp|B1ZKI7|IHFA_METPB RecName: Full=Integration host factor subunit alpha;
Short=IHF-alpha
gi|179344767|gb|ACB80179.1| histone family protein DNA-binding protein [Methylobacterium
populi BJ001]
Length = 108
Score = 87.9 bits (217), Expect = 4e-16, Method: Composition-based stats.
Identities = 24/90 (26%), Positives = 45/90 (50%), Gaps = 1/90 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
++ L + ++ L+ + +V +L E+ L++G V++ FGSF VR + R+
Sbjct: 7 TRADLSEAVYQQ-VGLSRAESAALVETVLGEICNCLSSGETVKLSSFGSFVVRSKGKRIG 65
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + +E + V F+ LK R+N
Sbjct: 66 RNPKTGVEVEIEPRQVMVFKPSNVLKARIN 95
>gi|289450416|ref|YP_003475021.1| DNA-binding protein HU [Clostridiales genomosp. BVAB3 str.
UPII9-5]
gi|289184963|gb|ADC91388.1| DNA-binding protein HU [Clostridiales genomosp. BVAB3 str.
UPII9-5]
Length = 91
Score = 87.9 bits (217), Expect = 4e-16, Method: Composition-based stats.
Identities = 34/92 (36%), Positives = 52/92 (56%), Gaps = 1/92 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M ++ LI +IA K L + E+ ++ +L ++ AL G +V + GFG+F VR RAAR
Sbjct: 1 MKRNDLIASIA-KAANLTKKSSEEALDAVLNTISDALIKGDKVILTGFGTFEVRARAARK 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P + I + P F+ GK LKE++N
Sbjct: 60 GRNPATKTEIMIPASKSPAFKPGKRLKEQVNK 91
>gi|254282572|ref|ZP_04957540.1| integration host factor, alpha subunit [gamma proteobacterium
NOR51-B]
gi|219678775|gb|EED35124.1| integration host factor, alpha subunit [gamma proteobacterium
NOR51-B]
Length = 104
Score = 87.9 bits (217), Expect = 4e-16, Method: Composition-based stats.
Identities = 25/89 (28%), Positives = 48/89 (53%), Gaps = 1/89 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
KS + + ++ LN ++ +++V EE+ L N ++++ GFG+F +R ++ R
Sbjct: 5 TKSEMAEKLFEEL-GLNKREAKELVEQFFEEIRICLENNEQMKLSGFGNFDLRDKSQRPG 63
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P + I + + V FR G+ LK R+
Sbjct: 64 RNPKTGEEIPISARRVVTFRPGQKLKARV 92
>gi|317476442|ref|ZP_07935691.1| bacterial DNA-binding protein [Bacteroides eggerthii 1_2_48FAA]
gi|316907468|gb|EFV29173.1| bacterial DNA-binding protein [Bacteroides eggerthii 1_2_48FAA]
Length = 88
Score = 87.9 bits (217), Expect = 4e-16, Method: Composition-based stats.
Identities = 32/86 (37%), Positives = 48/86 (55%), Gaps = 1/86 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI +A + L+ D ++ ++ + +T AL G +V + GFG+FSV +RA R+
Sbjct: 1 MNKSELISAMAAE-AGLSKADSKRALDAFIASVTTALKAGDKVALVGFGTFSVTERAGRV 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNL 86
P +K I + K V FRAG L
Sbjct: 60 GINPATKKPIQIPAKKVAKFRAGSEL 85
>gi|299135072|ref|ZP_07028263.1| integration host factor, alpha subunit [Afipia sp. 1NLS2]
gi|298590049|gb|EFI50253.1| integration host factor, alpha subunit [Afipia sp. 1NLS2]
Length = 114
Score = 87.9 bits (217), Expect = 4e-16, Method: Composition-based stats.
Identities = 28/99 (28%), Positives = 48/99 (48%), Gaps = 1/99 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
+ L + +K L+ + V ++L+E+T L G V++ FGSF VRK+ R+
Sbjct: 9 TRVDLCEAVYQK-VGLSRTESAAFVELVLKEITDCLEKGETVKLSSFGSFMVRKKGERIG 67
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDSTLSNS 100
R P + + + V F+ LK+R+N+ T S
Sbjct: 68 RNPKTGTEVPISPRRVMVFKPSAILKQRINNGAGTKDES 106
>gi|317051488|ref|YP_004112604.1| histone family protein DNA-binding protein [Desulfurispirillum
indicum S5]
gi|316946572|gb|ADU66048.1| histone family protein DNA-binding protein [Desulfurispirillum
indicum S5]
Length = 91
Score = 87.9 bits (217), Expect = 4e-16, Method: Composition-based stats.
Identities = 29/92 (31%), Positives = 49/92 (53%), Gaps = 1/92 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K LIG +A+ + + EK +N ++ ++ L +G +V + GFG+F V +RA R
Sbjct: 1 MTKKELIGKMAEAS-GITKVQAEKALNAFIDSVSSTLKSGEKVTLVGFGTFQVSERAKRQ 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
P + I++ + P F GK LKE ++
Sbjct: 60 GINPRTKTPITIPARKSPKFVPGKALKELVDK 91
>gi|302384103|ref|YP_003819926.1| histone family protein DNA-binding protein [Brevundimonas
subvibrioides ATCC 15264]
gi|302194731|gb|ADL02303.1| histone family protein DNA-binding protein [Brevundimonas
subvibrioides ATCC 15264]
Length = 92
Score = 87.9 bits (217), Expect = 4e-16, Method: Composition-based stats.
Identities = 25/91 (27%), Positives = 41/91 (45%), Gaps = 1/91 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
++ LI +A K+ ++ D +++ ++ + +L GG V I G F RAAR
Sbjct: 3 TQAELIAAVA-KDAGVSQADAGRVLEAFVKNIHSSLIAGGDVRISNLGVFDTAARAAREG 61
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P I + FR K LK+ +N
Sbjct: 62 RNPATGATIKIAASKAVRFRVSKPLKDAVNK 92
>gi|254447100|ref|ZP_05060567.1| integration host factor, alpha subunit [gamma proteobacterium
HTCC5015]
gi|198263239|gb|EDY87517.1| integration host factor, alpha subunit [gamma proteobacterium
HTCC5015]
Length = 92
Score = 87.9 bits (217), Expect = 4e-16, Method: Composition-based stats.
Identities = 25/75 (33%), Positives = 47/75 (62%)
Query: 16 KLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLARAPLAQKVISVEEK 75
LN ++ +++V + +E+ +ALA G V++ GFG+F++R+++ R R P + I + +
Sbjct: 10 GLNKREAKELVELFFDEIREALAEGEDVKLSGFGNFTLREKSQRPGRNPKTGEEIPISAR 69
Query: 76 MVPFFRAGKNLKERL 90
V FR G+ LK R+
Sbjct: 70 RVVTFRPGQKLKSRV 84
>gi|332186955|ref|ZP_08388696.1| integration host factor, alpha subunit [Sphingomonas sp. S17]
gi|332012965|gb|EGI55029.1| integration host factor, alpha subunit [Sphingomonas sp. S17]
Length = 99
Score = 87.9 bits (217), Expect = 4e-16, Method: Composition-based stats.
Identities = 25/89 (28%), Positives = 49/89 (55%), Gaps = 1/89 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
++ L ++ ++ L+ D ++V +L EM AL+ G V+I GFG+F +R + R+
Sbjct: 8 TRADLAESLHQE-VGLSRSDSAQVVEQILVEMCDALSRGENVKISGFGTFVLRDKGERVG 66
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P + + + V FRA + +++R+
Sbjct: 67 RNPKTGVEVPIAPRRVLTFRASQMMRDRI 95
>gi|255021995|ref|ZP_05294002.1| integration host factor, alpha subunit [Acidithiobacillus caldus
ATCC 51756]
gi|254968563|gb|EET26118.1| integration host factor, alpha subunit [Acidithiobacillus caldus
ATCC 51756]
Length = 101
Score = 87.9 bits (217), Expect = 4e-16, Method: Composition-based stats.
Identities = 23/99 (23%), Positives = 47/99 (47%), Gaps = 1/99 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K L + + ++V++ + + + LA G V++ GFG+F++R + AR
Sbjct: 4 TKLDLTNHLYD-TIGFKKAEAAELVDLFFDTIRETLARGEEVKLSGFGNFTLRDKRARPG 62
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDSTLSNS 100
R P ++++ + + V F A LK N+ D + +
Sbjct: 63 RNPRTRELVEISARRVVTFHASPVLKALCNAVDHQDNVT 101
>gi|189465271|ref|ZP_03014056.1| hypothetical protein BACINT_01617 [Bacteroides intestinalis DSM
17393]
gi|189437545|gb|EDV06530.1| hypothetical protein BACINT_01617 [Bacteroides intestinalis DSM
17393]
Length = 90
Score = 87.9 bits (217), Expect = 4e-16, Method: Composition-based stats.
Identities = 31/86 (36%), Positives = 50/86 (58%), Gaps = 1/86 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI +A ++ L D +K ++ + +T+AL G +V + GFG+F+V +RAARL
Sbjct: 1 MNKSELISAMAAES-GLTKADSKKALDAFMASITKALKAGDKVSLVGFGTFAVSERAARL 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNL 86
P ++ I++ K V F+ G L
Sbjct: 60 GINPSTKQSITIPAKKVAKFKPGMEL 85
>gi|325579267|ref|ZP_08149223.1| DNA-binding protein HU [Haemophilus parainfluenzae ATCC 33392]
gi|301155512|emb|CBW14979.1| HU, DNA-binding transcriptional regulator, alpha subunit
[Haemophilus parainfluenzae T3T1]
gi|325159502|gb|EGC71636.1| DNA-binding protein HU [Haemophilus parainfluenzae ATCC 33392]
Length = 90
Score = 87.9 bits (217), Expect = 4e-16, Method: Composition-based stats.
Identities = 33/91 (36%), Positives = 47/91 (51%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI IA +LN + + + L +T +L G V++ GFG+F V KRAAR
Sbjct: 1 MNKTDLIDAIASA-AELNKKQAKAALEATLAAITGSLKKGEPVQLIGFGTFKVNKRAART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P I + VP F +GK LK+ +
Sbjct: 60 GRNPQTGAEIKIAASKVPAFVSGKALKDAIK 90
>gi|84500953|ref|ZP_00999188.1| integration host factor, alpha subunit [Oceanicola batsensis
HTCC2597]
gi|84391020|gb|EAQ03438.1| integration host factor, alpha subunit [Oceanicola batsensis
HTCC2597]
Length = 100
Score = 87.9 bits (217), Expect = 4e-16, Method: Composition-based stats.
Identities = 27/89 (30%), Positives = 48/89 (53%), Gaps = 1/89 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
+ L + ++ L+ D ++V +L M+ AL G +V+I FG+FSVR +AAR+
Sbjct: 7 TRLDLSEAVFRE-VGLSRNDSAQLVESVLTHMSDALVRGEQVKISSFGTFSVRDKAARVG 65
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P + + + + V FR +K+R+
Sbjct: 66 RNPKTGEEVPISPRRVLTFRPSHLMKDRV 94
>gi|197105121|ref|YP_002130498.1| integration host factor alpha-subunit [Phenylobacterium zucineum
HLK1]
gi|226709738|sp|B4RB18|IHFA_PHEZH RecName: Full=Integration host factor subunit alpha;
Short=IHF-alpha
gi|196478541|gb|ACG78069.1| integration host factor alpha-subunit [Phenylobacterium zucineum
HLK1]
Length = 100
Score = 87.9 bits (217), Expect = 4e-16, Method: Composition-based stats.
Identities = 30/91 (32%), Positives = 51/91 (56%), Gaps = 1/91 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
++ L + ++ L QD ++V +LE M QAL G +V++ GFG F VR + AR+
Sbjct: 7 TRADLCEAVHEQ-VGLTRQDCAELVERVLELMCQALERGEQVKLSGFGVFQVRSKRARMG 65
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P + ++E + V FRA + +K R++
Sbjct: 66 RNPKTGEPAAIEPRRVIGFRASQVMKARVDQ 96
>gi|329936762|ref|ZP_08286469.1| histone-like DNA binding protein [Streptomyces griseoaurantiacus
M045]
gi|329303992|gb|EGG47875.1| histone-like DNA binding protein [Streptomyces griseoaurantiacus
M045]
Length = 222
Score = 87.9 bits (217), Expect = 4e-16, Method: Composition-based stats.
Identities = 32/95 (33%), Positives = 49/95 (51%), Gaps = 2/95 (2%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ L+ IA K Q V+ +L+ + +A+ G RV + GFGSF R AR
Sbjct: 1 MNKAQLVEAIADKMGG--RQQAADAVDAVLDAIVRAVVAGDRVSVTGFGSFEKVDRPARY 58
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDS 95
AR P + + V++ VP FRAG+ K+ ++
Sbjct: 59 ARNPQTGERVRVKKTSVPRFRAGQGFKDLVSGSKK 93
>gi|251793493|ref|YP_003008222.1| DNA-binding protein HU-beta [Aggregatibacter aphrophilus NJ8700]
gi|247534889|gb|ACS98135.1| DNA-binding protein HU-beta [Aggregatibacter aphrophilus NJ8700]
Length = 90
Score = 87.9 bits (217), Expect = 4e-16, Method: Composition-based stats.
Identities = 32/91 (35%), Positives = 47/91 (51%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI IA + +LN + + + LE +T +L G V++ GFG+F V R AR
Sbjct: 1 MNKTDLIDAIA-SSAELNKKQAKAALEATLEAITGSLKKGEAVQLIGFGTFKVNARKART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P I + VP F +GK LK+ +
Sbjct: 60 GRNPQTGAEIKIAASKVPAFVSGKALKDAVK 90
>gi|262165483|ref|ZP_06033220.1| integration host factor alpha subunit [Vibrio mimicus VM223]
gi|262025199|gb|EEY43867.1| integration host factor alpha subunit [Vibrio mimicus VM223]
Length = 98
Score = 87.9 bits (217), Expect = 4e-16, Method: Composition-based stats.
Identities = 27/93 (29%), Positives = 50/93 (53%), Gaps = 1/93 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ L + +K ++ +D + V + EE+ +AL +G +V++ GFG+F +R + R
Sbjct: 4 TKAELAEDLFEKL-GMSKRDAKDTVEVFFEEIRKALESGEQVKLSGFGNFDLRDKNERPG 62
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLNSPD 94
R P + I + + V FR G+ LK R+ +
Sbjct: 63 RNPKTGEDIPITARRVVTFRPGQKLKARVENIK 95
>gi|300022815|ref|YP_003755426.1| integration host factor, subunit alpha [Hyphomicrobium
denitrificans ATCC 51888]
gi|299524636|gb|ADJ23105.1| integration host factor, alpha subunit [Hyphomicrobium
denitrificans ATCC 51888]
Length = 101
Score = 87.9 bits (217), Expect = 4e-16, Method: Composition-based stats.
Identities = 25/91 (27%), Positives = 49/91 (53%), Gaps = 1/91 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
++ L + K L + + +V +LEE++ +LA+G V++ FGSF +R++ R+
Sbjct: 7 TRADLAEAVVSK-VGLPRNESQDLVERVLEEISGSLADGDPVKLSSFGSFGIRQKGERVG 65
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P + + + + V FR +K+R+N
Sbjct: 66 RNPKTGEEVPITPRRVLVFRPSNIMKDRINK 96
>gi|146328691|ref|YP_001209944.1| integration host factor, alpha subunit [Dichelobacter nodosus
VCS1703A]
gi|189044699|sp|A5EXT4|IHFA_DICNV RecName: Full=Integration host factor subunit alpha;
Short=IHF-alpha
gi|146232161|gb|ABQ13139.1| integration host factor, alpha subunit [Dichelobacter nodosus
VCS1703A]
Length = 98
Score = 87.9 bits (217), Expect = 4e-16, Method: Composition-based stats.
Identities = 27/89 (30%), Positives = 47/89 (52%), Gaps = 1/89 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ ++ I + + + +IV+ L EE+ LA G V++ GFG+F +R + R
Sbjct: 4 TKADIVEAIIAQI-GIPRPEAREIVDDLFEEIRSCLATGEPVKLSGFGNFELRDKNQRPG 62
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P + I + + V F+AG+ LK R+
Sbjct: 63 RNPKTGEEIPITARRVVSFKAGQKLKARV 91
>gi|91792960|ref|YP_562611.1| integration host factor, alpha subunit [Shewanella denitrificans
OS217]
gi|123356864|sp|Q12NT8|IHFA_SHEDO RecName: Full=Integration host factor subunit alpha;
Short=IHF-alpha
gi|91714962|gb|ABE54888.1| integration host factor, alpha subunit [Shewanella denitrificans
OS217]
Length = 99
Score = 87.9 bits (217), Expect = 4e-16, Method: Composition-based stats.
Identities = 27/94 (28%), Positives = 51/94 (54%), Gaps = 1/94 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ + + + LN + +++V EE+ +AL +G +V++ GFG+F +R + R
Sbjct: 4 TKAEMAEHLFE-TLGLNKRVAKEMVESFFEEIREALESGEQVKLSGFGNFDLRDKNQRPG 62
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDS 95
R P + I + + V FR G+ LK R+ + +S
Sbjct: 63 RNPKTGEDIPISARRVVTFRPGQKLKARVEAANS 96
>gi|313672337|ref|YP_004050448.1| histone family protein DNA-binding protein [Calditerrivibrio
nitroreducens DSM 19672]
gi|312939093|gb|ADR18285.1| histone family protein DNA-binding protein [Calditerrivibrio
nitroreducens DSM 19672]
Length = 92
Score = 87.9 bits (217), Expect = 4e-16, Method: Composition-based stats.
Identities = 40/90 (44%), Positives = 56/90 (62%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI IA++NP L+ + VE IVN + + AL + +VEIRGFGSF VRK+ +
Sbjct: 1 MNKSELIEKIAEENPHLSKRQVEFIVNGVFNSIKSALESDEKVEIRGFGSFKVRKKNRKE 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
AR P + + VE K VP+F+ + +K L
Sbjct: 61 ARNPKTGEKVIVEAKSVPYFKPSREIKLAL 90
>gi|254421741|ref|ZP_05035459.1| DNA-binding protein HU [Synechococcus sp. PCC 7335]
gi|196189230|gb|EDX84194.1| DNA-binding protein HU [Synechococcus sp. PCC 7335]
Length = 94
Score = 87.9 bits (217), Expect = 4e-16, Method: Composition-based stats.
Identities = 28/95 (29%), Positives = 48/95 (50%), Gaps = 1/95 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K L+ T+A+K+ + + + +++ +E + +A++ G +V + GFGSF R R R
Sbjct: 1 MNKGELVDTVAEKSS-VTKKQADAVISAAVESIMEAVSKGDKVTLVGFGSFEPRDRKERE 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDS 95
R P + + VP F AGK KE +
Sbjct: 60 GRNPKTGDTMVIPATTVPAFSAGKQFKEMVAGKKK 94
>gi|317154134|ref|YP_004122182.1| histone family protein DNA-binding protein [Desulfovibrio
aespoeensis Aspo-2]
gi|316944385|gb|ADU63436.1| histone family protein DNA-binding protein [Desulfovibrio
aespoeensis Aspo-2]
Length = 92
Score = 87.9 bits (217), Expect = 4e-16, Method: Composition-based stats.
Identities = 30/92 (32%), Positives = 44/92 (47%), Gaps = 1/92 (1%)
Query: 1 MIKSSLIGTIAKK-NPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAAR 59
M KS L+ + ++ + VEK VN L+ + + LA +V I GFGSF A R
Sbjct: 1 MNKSELMDAVFERRTTGFSKCHVEKAVNDALDIIAEQLAKSDKVVITGFGSFEAVTTAPR 60
Query: 60 LARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
L R P + + + F+ GK LKE +
Sbjct: 61 LGRNPHNGEAVQIPAGKKIKFKPGKALKEAVK 92
>gi|119945141|ref|YP_942821.1| integration host factor, alpha subunit [Psychromonas ingrahamii
37]
gi|166918519|sp|A1SUQ7|IHFA_PSYIN RecName: Full=Integration host factor subunit alpha;
Short=IHF-alpha
gi|119863745|gb|ABM03222.1| integration host factor, alpha subunit [Psychromonas ingrahamii
37]
Length = 100
Score = 87.9 bits (217), Expect = 4e-16, Method: Composition-based stats.
Identities = 27/92 (29%), Positives = 47/92 (51%), Gaps = 1/92 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ + ++ K L+ ++ ++ V EE+ L NG V+I GFG F ++ ++ R
Sbjct: 4 TKAEIAADLSVKI-GLSKREAKEFVESFFEEIKATLENGEAVKISGFGGFELKDKSERPG 62
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLNSP 93
R P + I + + V FRAG+ LKE +
Sbjct: 63 RNPKTGEDIPIAARRVVTFRAGQKLKELVEKN 94
>gi|78188542|ref|YP_378880.1| histone-like DNA-binding protein [Chlorobium chlorochromatii
CaD3]
gi|78170741|gb|ABB27837.1| Histone-like DNA-binding protein [Chlorobium chlorochromatii
CaD3]
Length = 102
Score = 87.9 bits (217), Expect = 4e-16, Method: Composition-based stats.
Identities = 33/89 (37%), Positives = 51/89 (57%), Gaps = 1/89 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ L+ IA K L + E +V+ L E + ++L G R+EIRGFGSF++R++ R A
Sbjct: 6 TKADLVAVIAHKT-GLTKNETEAVVDGLFESIIESLKAGRRIEIRGFGSFNIRQKNFRKA 64
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P + + V+ K VP F+ K K +
Sbjct: 65 RNPRTGESVEVDPKQVPAFKISKEFKLAV 93
>gi|323137325|ref|ZP_08072403.1| histone family protein DNA-binding protein [Methylocystis sp. ATCC
49242]
gi|322397312|gb|EFX99835.1| histone family protein DNA-binding protein [Methylocystis sp. ATCC
49242]
Length = 157
Score = 87.9 bits (217), Expect = 4e-16, Method: Composition-based stats.
Identities = 23/92 (25%), Positives = 49/92 (53%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
+ + I ++ ++ ++ ++IV+ +++EM L +G +++ FGSF VR++ R
Sbjct: 28 TRQDIALAIHRRIEGVSRREAKRIVDCVIDEMVSTLVSGESLKLHDFGSFLVREKEERSG 87
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLNSP 93
R P + +E + V F+A N+K +N
Sbjct: 88 RNPRTGAPVPIEARRVVVFKASPNMKATVNGE 119
>gi|23014673|ref|ZP_00054478.1| COG0776: Bacterial nucleoid DNA-binding protein [Magnetospirillum
magnetotacticum MS-1]
Length = 106
Score = 87.9 bits (217), Expect = 4e-16, Method: Composition-based stats.
Identities = 26/91 (28%), Positives = 51/91 (56%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
+ ++ L + ++ L+ + ++ +L+E++ ALA G V+I FGSFSVR + R+
Sbjct: 6 ITRAQLSEAVYQE-VGLSRNESADLLEAVLDEISGALAKGDAVKISSFGSFSVRSKGQRI 64
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + + + + V FR + LK+++N
Sbjct: 65 GRNPKTGEEVPITPRRVLVFRPSQLLKKKIN 95
>gi|330970215|gb|EGH70281.1| histone-like DNA-binding protein [Pseudomonas syringae pv. aceris
str. M302273PT]
Length = 91
Score = 87.9 bits (217), Expect = 4e-16, Method: Composition-based stats.
Identities = 28/91 (30%), Positives = 46/91 (50%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K + IA+K L + +++N +LEE+T AL V + G G+F R R AR
Sbjct: 1 MRKPDVAAAIAEK-ADLTKEQSNRVLNAILEEITGALNRKDSVTLVGLGTFLQRHRGART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
+ P + + ++ F+ GK LK+ +N
Sbjct: 60 GKNPQTGEPVKIKASNTVAFKPGKALKDSVN 90
>gi|319898049|ref|YP_004136246.1| DNA-binding protein hu [Haemophilus influenzae F3031]
gi|317433555|emb|CBY81939.1| DNA-binding protein HU [Haemophilus influenzae F3031]
Length = 90
Score = 87.9 bits (217), Expect = 4e-16, Method: Composition-based stats.
Identities = 32/91 (35%), Positives = 49/91 (53%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K++LI IA +LN + + + L+ +T +L G V++ GFG+F V +RAAR
Sbjct: 1 MNKTNLIDAIANA-AELNKKQAKAALEATLDAITASLKKGEPVQLIGFGTFKVNERAART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P I + VP F +GK LK+ +
Sbjct: 60 GRNPQTGAEIQIAASKVPAFVSGKALKDAIK 90
>gi|218129554|ref|ZP_03458358.1| hypothetical protein BACEGG_01131 [Bacteroides eggerthii DSM
20697]
gi|217988284|gb|EEC54607.1| hypothetical protein BACEGG_01131 [Bacteroides eggerthii DSM
20697]
Length = 106
Score = 87.9 bits (217), Expect = 4e-16, Method: Composition-based stats.
Identities = 25/90 (27%), Positives = 40/90 (44%), Gaps = 1/90 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K LI +A + L D K ++ + +A G + G G+F VR+ AR
Sbjct: 1 MNKQELIKAVAAAS-GLCVVDASKEMSAFENILEDCMARGEILSWSGVGAFCVREHKARP 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P + + + V F GK+L+E +
Sbjct: 60 GRNPFTGLGMRIPTRKVVKFSPGKSLREAV 89
>gi|83858237|ref|ZP_00951759.1| integration host factor, alpha subunit [Oceanicaulis alexandrii
HTCC2633]
gi|83853060|gb|EAP90912.1| integration host factor, alpha subunit [Oceanicaulis alexandrii
HTCC2633]
Length = 100
Score = 87.9 bits (217), Expect = 4e-16, Method: Composition-based stats.
Identities = 22/95 (23%), Positives = 50/95 (52%), Gaps = 1/95 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
++ L + ++ L+ + ++V +L+ ++ L G V++ FGSF +R + R+
Sbjct: 7 TRADLSDAVHRE-VGLSRHESAELVEAVLDMISDKLVGGESVKLSSFGSFLLRDKTGRVG 65
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDST 96
R P + + +E + V F+ + LK+R+++ S
Sbjct: 66 RNPKTGEEVPIEPRRVLVFKPSQVLKDRVDAALSK 100
>gi|300309668|ref|YP_003773760.1| HU histone family DNA-binding protein [Herbaspirillum seropedicae
SmR1]
gi|300072453|gb|ADJ61852.1| HU histone family DNA-binding protein [Herbaspirillum seropedicae
SmR1]
Length = 115
Score = 87.9 bits (217), Expect = 5e-16, Method: Composition-based stats.
Identities = 30/94 (31%), Positives = 48/94 (51%), Gaps = 1/94 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
KS L+ IA +++ ++ ++ ++E + +A+ G V++ GFGSFS KRAAR
Sbjct: 23 NKSELVDVIAADT-EISKAAAQRALDSVIENIIKAVTKGDTVQLVGFGSFSTGKRAARTG 81
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDS 95
R P + I + F AGK KE +N
Sbjct: 82 RNPQTGEEIKIAAATTVKFSAGKAFKEAVNKKKK 115
>gi|297538718|ref|YP_003674487.1| histone family protein DNA-binding protein [Methylotenera sp.
301]
gi|297258065|gb|ADI29910.1| histone family protein DNA-binding protein [Methylotenera sp.
301]
Length = 90
Score = 87.9 bits (217), Expect = 5e-16, Method: Composition-based stats.
Identities = 33/91 (36%), Positives = 48/91 (52%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI +IA + L+ + ++ +T A+ G V + GFG+F V KR AR
Sbjct: 1 MNKSELIDSIASAS-GLSKAAAGRALDATTAAITAAMKKGDLVTLIGFGTFYVGKREARN 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P I ++ P FRAGK+LK+ +N
Sbjct: 60 GRNPRTGATIKIKAANSPKFRAGKSLKDAVN 90
>gi|149177307|ref|ZP_01855912.1| probable DNA-binding protein HU [Planctomyces maris DSM 8797]
gi|148843832|gb|EDL58190.1| probable DNA-binding protein HU [Planctomyces maris DSM 8797]
Length = 148
Score = 87.9 bits (217), Expect = 5e-16, Method: Composition-based stats.
Identities = 31/98 (31%), Positives = 52/98 (53%), Gaps = 1/98 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K ++ I+++ L ++IV + + L R+E+R FG F V+KRAAR
Sbjct: 1 MTKKEIVKVISEEI-GLTQLKTKEIVQKTFDAIVDTLVTDKRIELRNFGVFEVKKRAARK 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDSTLS 98
AR P + VEEK V F+ GK +++R+ + + +
Sbjct: 60 ARNPRTGDRVDVEEKYVVTFKPGKEMEKRVRNLEEEAA 97
>gi|116748869|ref|YP_845556.1| histone family protein DNA-binding protein [Syntrophobacter
fumaroxidans MPOB]
gi|116697933|gb|ABK17121.1| histone family protein DNA-binding protein [Syntrophobacter
fumaroxidans MPOB]
Length = 90
Score = 87.9 bits (217), Expect = 5e-16, Method: Composition-based stats.
Identities = 29/91 (31%), Positives = 48/91 (52%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ L+ +A + EK +N L+ ++ ALA G ++ + GFG+F V KRA R
Sbjct: 1 MTKADLVIKMAD-GTGITKAAAEKALNNLIAAVSAALAKGDKITLVGFGTFDVAKRAKRE 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + I++ V F+AG L++ +
Sbjct: 60 GRNPRTGQAITIPASKVVRFKAGNKLRDAIK 90
>gi|322381499|ref|ZP_08055479.1| non-specific DNA-binding protein Hbsu/signal recognition
particle-like protein [Paenibacillus larvae subsp.
larvae B-3650]
gi|322382684|ref|ZP_08056542.1| non-specific DNA-binding protein Hbsu/signal recognition
particle-like protein [Paenibacillus larvae subsp.
larvae B-3650]
gi|321153345|gb|EFX45775.1| non-specific DNA-binding protein Hbsu/signal recognition
particle-like protein [Paenibacillus larvae subsp.
larvae B-3650]
gi|321154541|gb|EFX46837.1| non-specific DNA-binding protein Hbsu/signal recognition
particle-like protein [Paenibacillus larvae subsp.
larvae B-3650]
Length = 119
Score = 87.9 bits (217), Expect = 5e-16, Method: Composition-based stats.
Identities = 32/91 (35%), Positives = 49/91 (53%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K L+ +A K+ + ++ EK V +L+ + +AL G V++ GFG F VR R AR+
Sbjct: 28 MNKEQLVEVVA-KSSGFSKKNAEKAVTHVLDSIFEALKQGKEVQLVGFGKFDVRSREARM 86
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R + + + VP F AG LK+ LN
Sbjct: 87 GRNRKTGEEVELPAGKVPVFTAGITLKKALN 117
>gi|77166413|ref|YP_344938.1| histone-like DNA-binding protein [Nitrosococcus oceani ATCC
19707]
gi|254435865|ref|ZP_05049372.1| DNA-binding protein HU [Nitrosococcus oceani AFC27]
gi|76884727|gb|ABA59408.1| Histone-like DNA-binding protein [Nitrosococcus oceani ATCC
19707]
gi|207088976|gb|EDZ66248.1| DNA-binding protein HU [Nitrosococcus oceani AFC27]
Length = 94
Score = 87.9 bits (217), Expect = 5e-16, Method: Composition-based stats.
Identities = 36/95 (37%), Positives = 53/95 (55%), Gaps = 1/95 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ L+ + K L+ ++ VN L + +T L+ GRV + GFGSFSV+KRAAR
Sbjct: 1 MNKTELVNFVVLK-ANLSQATAQRAVNALFQTITGVLSEEGRVNLVGFGSFSVQKRAARS 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDS 95
R P + +VI ++ K P F+ K LKE +
Sbjct: 60 GRHPQSGEVIIIQAKSAPTFKPSKALKEIVQQRKQ 94
>gi|332308727|ref|YP_004436577.1| histone family protein DNA-binding protein [Glaciecola
agarilytica 4H-3-7+YE-5]
gi|332176056|gb|AEE25309.1| histone family protein DNA-binding protein [Glaciecola
agarilytica 4H-3-7+YE-5]
Length = 92
Score = 87.9 bits (217), Expect = 5e-16, Method: Composition-based stats.
Identities = 26/92 (28%), Positives = 48/92 (52%), Gaps = 1/92 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K +I +A + + ++ + +N + + L N +V + GFG+FS R RA R+
Sbjct: 1 MNKQHVIEIMALAS-GITQREAKLALNAFTDAVQVTLQNNDKVSLVGFGNFSTRHRAERI 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P + +++ +P F+A K LK+ N+
Sbjct: 60 GRNPQTGEPLTIPAATIPEFKASKCLKDSCNN 91
>gi|325118559|emb|CBZ54110.1| putative DNA-binding protein HU [Neospora caninum Liverpool]
Length = 221
Score = 87.9 bits (217), Expect = 5e-16, Method: Composition-based stats.
Identities = 29/89 (32%), Positives = 49/89 (55%), Gaps = 1/89 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
+ L+ ++A + +L+ DVE+ V LL + +L G +V I FGSF +R+R R+A
Sbjct: 107 TRKDLVASVAAEL-QLSRADVERTVGALLRHIAASLEQGQKVSISKFGSFGLRRRGERVA 165
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P + ++V P F K LK+++
Sbjct: 166 RNPRTGEPLNVPATTFPTFSFSKVLKDKV 194
>gi|297202603|ref|ZP_06920000.1| DNA-binding protein HU 2 [Streptomyces sviceus ATCC 29083]
gi|197709867|gb|EDY53901.1| DNA-binding protein HU 2 [Streptomyces sviceus ATCC 29083]
Length = 215
Score = 87.9 bits (217), Expect = 5e-16, Method: Composition-based stats.
Identities = 34/100 (34%), Positives = 50/100 (50%), Gaps = 3/100 (3%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ L+ IA K Q V+ +L+ + +A G RV + GFGSF R AR
Sbjct: 1 MNKAQLVEAIADKVGG--RQQAADAVDAVLDAIVRATVAGDRVSVTGFGSFEKVDRPARY 58
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDSTLSNS 100
AR P + + V++ VP FRAG+ K+ + S L +
Sbjct: 59 ARNPQTGERVRVKKTSVPRFRAGQGFKDLV-SGTKKLPKN 97
>gi|291544776|emb|CBL17885.1| bacterial nucleoid protein Hbs [Ruminococcus sp. 18P13]
Length = 91
Score = 87.5 bits (216), Expect = 5e-16, Method: Composition-based stats.
Identities = 29/92 (31%), Positives = 52/92 (56%), Gaps = 1/92 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI IA + + +D E+ + ++L +T+ LA G ++ + GFG+F VR+R +
Sbjct: 1 MTKADLIDAIAA-SAGSSKKDAERALQVVLSTITEKLAAGEKISLIGFGTFEVRERKEKT 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
P ++ ++ P F+AGK LK+ +N
Sbjct: 60 CINPRTKEKLTAPACKAPVFKAGKALKDAVNK 91
>gi|307822734|ref|ZP_07652965.1| integration host factor, alpha subunit [Methylobacter
tundripaludum SV96]
gi|307736338|gb|EFO07184.1| integration host factor, alpha subunit [Methylobacter
tundripaludum SV96]
Length = 98
Score = 87.5 bits (216), Expect = 5e-16, Method: Composition-based stats.
Identities = 27/89 (30%), Positives = 49/89 (55%), Gaps = 1/89 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ + + LN ++ + +V M EE+ +L +G +V+I GFG F +R +++R
Sbjct: 4 TKADFAERLFDEL-GLNKREAKDMVEMFFEEIKGSLEHGEQVKISGFGKFELRDKSSRPG 62
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P + I + + V FR+G+ LK R+
Sbjct: 63 RNPKTGEEIPITARRVVTFRSGQKLKARV 91
>gi|145633212|ref|ZP_01788943.1| translation initiation factor IF-3 [Haemophilus influenzae 3655]
gi|145634922|ref|ZP_01790629.1| integration host factor alpha-subunit [Haemophilus influenzae
PittAA]
gi|229845127|ref|ZP_04465262.1| integration host factor alpha-subunit [Haemophilus influenzae
6P18H1]
gi|144986058|gb|EDJ92648.1| translation initiation factor IF-3 [Haemophilus influenzae 3655]
gi|145267788|gb|EDK07785.1| integration host factor alpha-subunit [Haemophilus influenzae
PittAA]
gi|229811963|gb|EEP47657.1| integration host factor alpha-subunit [Haemophilus influenzae
6P18H1]
Length = 96
Score = 87.5 bits (216), Expect = 5e-16, Method: Composition-based stats.
Identities = 28/94 (29%), Positives = 52/94 (55%), Gaps = 1/94 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
+ K +I ++ K L+ QD + +V LEE+ +L +G V++ GFG+F +R +++R
Sbjct: 4 ITKLDIIEYLSDKY-HLSKQDTKNVVENFLEEIRLSLESGQDVKLSGFGNFELRDKSSRP 62
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSPD 94
R P V+ V + V F+ G+ L+ R+ +
Sbjct: 63 GRNPKTGDVVPVSARRVVTFKPGQKLRARVENTK 96
>gi|118578624|ref|YP_899874.1| histone family protein DNA-binding protein [Pelobacter
propionicus DSM 2379]
gi|118501334|gb|ABK97816.1| histone family protein DNA-binding protein [Pelobacter
propionicus DSM 2379]
Length = 91
Score = 87.5 bits (216), Expect = 5e-16, Method: Composition-based stats.
Identities = 23/92 (25%), Positives = 46/92 (50%), Gaps = 1/92 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ ++ I + ++ +++ + M L G ++I GFGSF V+++ AR
Sbjct: 1 MTKADIVERIHA-GTGMTQKESAEMMETVFSIMKSTLETGETLKISGFGSFVVKQKNARR 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P + I++E + V F+ L++ +N
Sbjct: 60 GRNPQTGETITIEARRVLSFKPSTVLRDVINK 91
>gi|224537593|ref|ZP_03678132.1| hypothetical protein BACCELL_02473 [Bacteroides cellulosilyticus
DSM 14838]
gi|224520790|gb|EEF89895.1| hypothetical protein BACCELL_02473 [Bacteroides cellulosilyticus
DSM 14838]
Length = 90
Score = 87.5 bits (216), Expect = 5e-16, Method: Composition-based stats.
Identities = 31/86 (36%), Positives = 49/86 (56%), Gaps = 1/86 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI +A ++ L D +K ++ + +T+AL G +V + GFG+F V +RAARL
Sbjct: 1 MNKSELINAMAAES-GLTKTDSKKALDAFMAAITKALKAGDKVSLVGFGTFVVAERAARL 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNL 86
P ++ I++ K V F+ G L
Sbjct: 60 GINPSTKQSITIPAKRVAKFKPGMEL 85
>gi|302668567|ref|YP_003833015.1| DNA-binding protein [Butyrivibrio proteoclasticus B316]
gi|302397531|gb|ADL36433.1| DNA-binding protein [Butyrivibrio proteoclasticus B316]
Length = 94
Score = 87.5 bits (216), Expect = 5e-16, Method: Composition-based stats.
Identities = 34/95 (35%), Positives = 49/95 (51%), Gaps = 1/95 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ L+ IAK+ L EK V + +T+ L G+V++ GFG+F KRAAR
Sbjct: 1 MNKTELVEAIAKQT-GLTKAASEKAVKAFTDVVTKELKKKGKVQLVGFGTFETAKRAART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDS 95
+ P I + VP F+AGK LK+ +N
Sbjct: 60 GKNPQTGAAIKIPAATVPKFKAGKALKDTVNGNKK 94
>gi|269127666|ref|YP_003301036.1| histone family protein DNA-binding protein [Thermomonospora
curvata DSM 43183]
gi|268312624|gb|ACY98998.1| histone family protein DNA-binding protein [Thermomonospora
curvata DSM 43183]
Length = 92
Score = 87.5 bits (216), Expect = 5e-16, Method: Composition-based stats.
Identities = 33/94 (35%), Positives = 48/94 (51%), Gaps = 2/94 (2%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K L+ I+++ + + + V+ +LE + A+A G +V I GFGSF +R AR
Sbjct: 1 MNKRELVDAISERLG--SKKAAAEAVDAILETIQNAVAKGDKVAITGFGSFEKAERPART 58
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSPD 94
AR P K I V VP FRAG + K +
Sbjct: 59 ARNPATGKTIEVPATSVPKFRAGSDFKNLVAGKK 92
>gi|114566192|ref|YP_753346.1| non-specific DNA-binding protein HBsu [Syntrophomonas wolfei
subsp. wolfei str. Goettingen]
gi|114337127|gb|ABI67975.1| bacterial nucleoid protein Hbs [Syntrophomonas wolfei subsp.
wolfei str. Goettingen]
Length = 110
Score = 87.5 bits (216), Expect = 5e-16, Method: Composition-based stats.
Identities = 36/86 (41%), Positives = 54/86 (62%), Gaps = 1/86 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS L+ ++A+K ++ +D K+++ L+E + QALA G +V+I GFGSF VR R R
Sbjct: 1 MNKSELVKSLAEK-AEITQKDAAKVLDALVESIQQALAGGDKVQIIGFGSFEVRDRKERK 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNL 86
+P K I+V VP F+ GK+L
Sbjct: 60 VISPATGKEITVPATKVPAFKPGKSL 85
>gi|225023835|ref|ZP_03713027.1| hypothetical protein EIKCOROL_00701 [Eikenella corrodens ATCC
23834]
gi|224943309|gb|EEG24518.1| hypothetical protein EIKCOROL_00701 [Eikenella corrodens ATCC
23834]
Length = 100
Score = 87.5 bits (216), Expect = 5e-16, Method: Composition-based stats.
Identities = 25/89 (28%), Positives = 44/89 (49%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ L + +K ++ D ++IV + EE+ L G ++I GFG+F +R + R
Sbjct: 4 TKAELADILVEKVSNISKNDAKEIVELFFEEIRATLERGEEIKISGFGNFQLRDKPQRPG 63
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P K + + + V F A + LK +
Sbjct: 64 RNPKTGKEVPITARRVVTFHASQKLKGMV 92
>gi|34499324|ref|NP_903539.1| DNA-binding protein HU-beta [Chromobacterium violaceum ATCC
12472]
gi|34105175|gb|AAQ61531.1| probable DNA-binding protein hu-beta [Chromobacterium violaceum
ATCC 12472]
Length = 89
Score = 87.5 bits (216), Expect = 5e-16, Method: Composition-based stats.
Identities = 29/90 (32%), Positives = 45/90 (50%), Gaps = 2/90 (2%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI ++ K+ L DV +++ E + LA+ G + I G F V++ AAR
Sbjct: 1 MTKAELIALLSDKS-GLTKADVLRVLGAFDEVLLDTLADNGEISIVA-GKFKVKETAART 58
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P + I + K F A K LK+R+
Sbjct: 59 GRNPKTGETIQIAAKRKVSFVASKQLKDRI 88
>gi|326317193|ref|YP_004234865.1| histone family protein DNA-binding protein [Acidovorax avenae
subsp. avenae ATCC 19860]
gi|323374029|gb|ADX46298.1| histone family protein DNA-binding protein [Acidovorax avenae
subsp. avenae ATCC 19860]
Length = 121
Score = 87.5 bits (216), Expect = 5e-16, Method: Composition-based stats.
Identities = 25/89 (28%), Positives = 47/89 (52%), Gaps = 1/89 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ L + + LN ++ + +++ + + Q L +G V+I GFG+F +R +A R
Sbjct: 26 TKAQLAELLFDQI-GLNKRESKDMIDAFFDLIAQRLVDGQDVKISGFGNFQIRTKAPRPG 84
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P + I ++ + V F A LKE++
Sbjct: 85 RNPRTGEAIPIQARRVVTFHASTKLKEQI 113
>gi|313891625|ref|ZP_07825232.1| DNA-binding protein HU [Dialister microaerophilus UPII 345-E]
gi|329122095|ref|ZP_08250703.1| DNA-binding protein HU [Dialister micraerophilus DSM 19965]
gi|313119903|gb|EFR43088.1| DNA-binding protein HU [Dialister microaerophilus UPII 345-E]
gi|327466902|gb|EGF12418.1| DNA-binding protein HU [Dialister micraerophilus DSM 19965]
Length = 92
Score = 87.5 bits (216), Expect = 5e-16, Method: Composition-based stats.
Identities = 34/93 (36%), Positives = 55/93 (59%), Gaps = 1/93 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI +A+K ++ +D EK V +++ ++ A+ G +V++ GFG+F VR+R AR
Sbjct: 1 MNKTELITAVAQK-AEMTKKDAEKAVKAVIDVISDAMVKGEKVQLIGFGTFEVRERKARE 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSP 93
P QK I + P FR K LKE++N+
Sbjct: 60 GHNPSTQKPIKIPASKAPAFRVSKQLKEKVNAK 92
>gi|260437765|ref|ZP_05791581.1| DNA-binding protein HU [Butyrivibrio crossotus DSM 2876]
gi|292809787|gb|EFF68992.1| DNA-binding protein HU [Butyrivibrio crossotus DSM 2876]
Length = 90
Score = 87.5 bits (216), Expect = 5e-16, Method: Composition-based stats.
Identities = 32/91 (35%), Positives = 52/91 (57%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ L IA+K +++ +D EK + E + + L G ++++ GFG+F V +RAAR
Sbjct: 1 MNKTELASAIAEK-AEISKKDAEKALKAFTEVVAEELKKGEKIQLVGFGTFEVGERAARE 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
P ++ I + P F+AGK LK+ LN
Sbjct: 60 GINPRTRETIKIAAAKTPKFKAGKQLKDSLN 90
>gi|71066048|ref|YP_264775.1| putative histone-like DNA-binding protein [Psychrobacter arcticus
273-4]
gi|93006496|ref|YP_580933.1| histone-like DNA-binding protein [Psychrobacter cryohalolentis
K5]
gi|71039033|gb|AAZ19341.1| putative histone-like bacterial DNA-binding protein
[Psychrobacter arcticus 273-4]
gi|92394174|gb|ABE75449.1| histone-like DNA-binding protein [Psychrobacter cryohalolentis
K5]
Length = 82
Score = 87.5 bits (216), Expect = 5e-16, Method: Composition-based stats.
Identities = 32/77 (41%), Positives = 44/77 (57%)
Query: 17 LNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLARAPLAQKVISVEEKM 76
+ V+ V +L MT LAN GRVE+RGFGSF + R AR+ R P + + V K
Sbjct: 1 MTDTVVDDAVREILNLMTHTLANDGRVEVRGFGSFCLHHRRARMGRNPKTGESVPVPAKA 60
Query: 77 VPFFRAGKNLKERLNSP 93
+P F+ GK L+E +N
Sbjct: 61 IPHFKPGKALREAVNEK 77
>gi|119775086|ref|YP_927826.1| integration host factor subunit alpha [Shewanella amazonensis
SB2B]
gi|166918523|sp|A1S700|IHFA_SHEAM RecName: Full=Integration host factor subunit alpha;
Short=IHF-alpha
gi|119767586|gb|ABM00157.1| integration host factor, alpha subunit [Shewanella amazonensis
SB2B]
Length = 98
Score = 87.5 bits (216), Expect = 5e-16, Method: Composition-based stats.
Identities = 27/95 (28%), Positives = 50/95 (52%), Gaps = 1/95 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ + + + +N + +++V EE+ AL +G +V++ GFG+F +R + R
Sbjct: 4 TKAEMAEHLFE-TLGINKRVAKEMVETFFEEIRSALESGEQVKLSGFGNFDLRDKNQRPG 62
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDST 96
R P + I + + V FR G+ LK R+ S +S
Sbjct: 63 RNPKTGEDIPISARRVVTFRPGQKLKSRVESSNSE 97
>gi|332284737|ref|YP_004416648.1| integration host factor beta-subunit [Pusillimonas sp. T7-7]
gi|330428690|gb|AEC20024.1| integration host factor beta-subunit [Pusillimonas sp. T7-7]
Length = 103
Score = 87.5 bits (216), Expect = 5e-16, Method: Composition-based stats.
Identities = 37/81 (45%), Positives = 54/81 (66%)
Query: 20 QDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLARAPLAQKVISVEEKMVPF 79
+D + V +L+ MTQALA+G R+EIRGFGSFS+ +RA R+ R P + + + V K VP
Sbjct: 4 RDTDYAVKTVLDAMTQALASGQRIEIRGFGSFSLSERAPRIGRNPKSGEKVQVPGKQVPH 63
Query: 80 FRAGKNLKERLNSPDSTLSNS 100
F+ GK L+ER++S + S
Sbjct: 64 FKPGKELRERVDSAYDQEAES 84
>gi|169824180|ref|YP_001691791.1| DNA binding protein [Finegoldia magna ATCC 29328]
gi|302380836|ref|ZP_07269299.1| DNA-binding protein HU [Finegoldia magna ACS-171-V-Col3]
gi|303234932|ref|ZP_07321557.1| DNA-binding protein HU [Finegoldia magna BVS033A4]
gi|167830985|dbj|BAG07901.1| DNA binding protein [Finegoldia magna ATCC 29328]
gi|302311331|gb|EFK93349.1| DNA-binding protein HU [Finegoldia magna ACS-171-V-Col3]
gi|302494050|gb|EFL53831.1| DNA-binding protein HU [Finegoldia magna BVS033A4]
Length = 96
Score = 87.5 bits (216), Expect = 5e-16, Method: Composition-based stats.
Identities = 36/97 (37%), Positives = 59/97 (60%), Gaps = 2/97 (2%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS L+ +IAKK+ +L+ + E+ +N ++ + + LA G +V++ GFG+F R+R AR
Sbjct: 1 MNKSELLSSIAKKS-ELSKVESERALNAFIKTVEETLAKGEKVQLVGFGTFESRERKARE 59
Query: 61 ARAPLA-QKVISVEEKMVPFFRAGKNLKERLNSPDST 96
R P ++ I + P F+AGK+LKE +N S
Sbjct: 60 GRNPRNPEEKIQIPASNAPVFKAGKSLKEAVNQKKSK 96
>gi|121730318|ref|ZP_01682684.1| integration host factor, alpha subunit [Vibrio cholerae V52]
gi|121627928|gb|EAX60500.1| integration host factor, alpha subunit [Vibrio cholerae V52]
Length = 85
Score = 87.5 bits (216), Expect = 6e-16, Method: Composition-based stats.
Identities = 23/82 (28%), Positives = 44/82 (53%), Gaps = 1/82 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ L + ++ ++ +D + V + EE+ +AL +G +V++ GFG+F +R + R
Sbjct: 4 TKAELAEALFEQL-GMSKRDAKDTVEVFFEEIRKALESGEQVKLSGFGNFDLRDKNERPG 62
Query: 62 RAPLAQKVISVEEKMVPFFRAG 83
R P + I + + V FR G
Sbjct: 63 RNPKTGEDIPITARRVVTFRPG 84
>gi|227877728|ref|ZP_03995764.1| DNA-binding protein HU [Lactobacillus crispatus JV-V01]
gi|256843583|ref|ZP_05549071.1| nucleoid DNA-binding protein [Lactobacillus crispatus 125-2-CHN]
gi|256850059|ref|ZP_05555489.1| nucleoid DNA-binding protein [Lactobacillus crispatus MV-1A-US]
gi|262047347|ref|ZP_06020304.1| DNA-binding protein [Lactobacillus crispatus MV-3A-US]
gi|293381854|ref|ZP_06627823.1| DNA-binding protein HU [Lactobacillus crispatus 214-1]
gi|295693326|ref|YP_003601936.1| DNA-binding protein hu [Lactobacillus crispatus ST1]
gi|227862716|gb|EEJ70199.1| DNA-binding protein HU [Lactobacillus crispatus JV-V01]
gi|256615003|gb|EEU20204.1| nucleoid DNA-binding protein [Lactobacillus crispatus 125-2-CHN]
gi|256713031|gb|EEU28022.1| nucleoid DNA-binding protein [Lactobacillus crispatus MV-1A-US]
gi|260572321|gb|EEX28884.1| DNA-binding protein [Lactobacillus crispatus MV-3A-US]
gi|290921575|gb|EFD98608.1| DNA-binding protein HU [Lactobacillus crispatus 214-1]
gi|295031432|emb|CBL50911.1| DNA-binding protein HU [Lactobacillus crispatus ST1]
Length = 94
Score = 87.5 bits (216), Expect = 6e-16, Method: Composition-based stats.
Identities = 30/92 (32%), Positives = 49/92 (53%), Gaps = 1/92 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
+ K L+ IA K D+ I++ ++ + +A G +V++ GFG+F +R RAAR
Sbjct: 4 ISKKQLVDQIAAKT-DATKTDINTILDAYIDVVKSNVAEGNKVQLVGFGAFELRHRAARK 62
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P K I + VP F+ GK+ K+ +N
Sbjct: 63 GRNPQTGKEIEIAASNVPAFKPGKSFKDEVNK 94
>gi|14194853|sp|Q9F297|IHFA_NEIGO RecName: Full=Integration host factor subunit alpha;
Short=IHF-alpha
gi|9965582|gb|AAG10094.1| IfhB [Neisseria gonorrhoeae]
Length = 96
Score = 87.5 bits (216), Expect = 6e-16, Method: Composition-based stats.
Identities = 24/89 (26%), Positives = 43/89 (48%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ L + K + ++IV + EE+ LA+G ++I GFG+F +R + R
Sbjct: 4 TKAELADILVDKVSNVTKNSAKEIVELFFEEIRSTLASGEEIKISGFGNFQLRDKPQRPG 63
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P + + + + V F A + LK +
Sbjct: 64 RNPKTGEEVPITARRVVTFHASQKLKGMV 92
>gi|34497618|ref|NP_901833.1| DNA-binding protein HU-beta [Chromobacterium violaceum ATCC
12472]
gi|34103474|gb|AAQ59836.1| DNA-binding protein hu-beta [Chromobacterium violaceum ATCC
12472]
Length = 90
Score = 87.5 bits (216), Expect = 6e-16, Method: Composition-based stats.
Identities = 25/89 (28%), Positives = 39/89 (43%), Gaps = 1/89 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K LI +A + + + E ++N L + + GG + I G F +RAA+
Sbjct: 1 MTKQDLIKHLAA-HADVTNKQAESVLNALTTAVLDTVRAGGELAISDLGKFGTTQRAAKT 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKER 89
R P + I + K P F K LK+
Sbjct: 60 GRNPKTGETIQIAAKRAPKFSPAKALKDA 88
>gi|17547240|ref|NP_520642.1| DNA-binding protein HU-beta [Ralstonia solanacearum GMI1000]
gi|187929862|ref|YP_001900349.1| histone family protein DNA-binding protein [Ralstonia pickettii
12J]
gi|207725148|ref|YP_002255545.1| dna-binding protein hu-beta (ns1) (hu-1) [Ralstonia solanacearum
MolK2]
gi|207742516|ref|YP_002258908.1| dna-binding protein hu-beta (ns1) (hu-1) [Ralstonia solanacearum
IPO1609]
gi|241663971|ref|YP_002982331.1| histone family protein DNA-binding protein [Ralstonia pickettii
12D]
gi|300690608|ref|YP_003751603.1| DNA-binding protein HU-beta, NS1 (HU-1), plays a role in DNA
replication and in rpo translation [Ralstonia
solanacearum PSI07]
gi|300703213|ref|YP_003744815.1| DNA-binding protein hu-beta, ns1 (hu-1), plays a role in DNA
replication and in rpo translation [Ralstonia
solanacearum CFBP2957]
gi|309781438|ref|ZP_07676174.1| DNA-binding protein HU [Ralstonia sp. 5_7_47FAA]
gi|17429542|emb|CAD16228.1| probable dna-binding protein hu-beta (ns1) (hu-1) [Ralstonia
solanacearum GMI1000]
gi|187726752|gb|ACD27917.1| histone family protein DNA-binding protein [Ralstonia pickettii
12J]
gi|206590380|emb|CAQ37341.1| dna-binding protein hu-beta (ns1) (hu-1) [Ralstonia solanacearum
MolK2]
gi|206593908|emb|CAQ60835.1| dna-binding protein hu-beta (ns1) (hu-1) [Ralstonia solanacearum
IPO1609]
gi|240865998|gb|ACS63659.1| histone family protein DNA-binding protein [Ralstonia pickettii
12D]
gi|299065882|emb|CBJ37061.1| DNA-binding protein HU-beta, NS1 (HU-1), plays a role in DNA
replication and in rpo translation [Ralstonia
solanacearum CMR15]
gi|299070876|emb|CBJ42178.1| DNA-binding protein HU-beta, NS1 (HU-1), plays a role in DNA
replication and in rpo translation [Ralstonia
solanacearum CFBP2957]
gi|299077668|emb|CBJ50304.1| DNA-binding protein HU-beta, NS1 (HU-1), plays a role in DNA
replication and in rpo translation [Ralstonia
solanacearum PSI07]
gi|308919851|gb|EFP65512.1| DNA-binding protein HU [Ralstonia sp. 5_7_47FAA]
Length = 94
Score = 87.5 bits (216), Expect = 6e-16, Method: Composition-based stats.
Identities = 34/93 (36%), Positives = 49/93 (52%), Gaps = 1/93 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
KS L+ IA K+ +L+ E+ +N LE + + +A GG + + GFGSFS KRAAR
Sbjct: 3 TKSELVAAIA-KDAELSNAAAERALNSALENIKKTVAKGGTITLVGFGSFSSGKRAARTG 61
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLNSPD 94
R P + I + F AGK K+ +N
Sbjct: 62 RNPRTGEAIKIPATKTVKFTAGKGFKDAVNKKK 94
>gi|254788366|ref|YP_003075795.1| DNA-binding protein HU [Teredinibacter turnerae T7901]
gi|237686942|gb|ACR14206.1| DNA-binding protein HU [Teredinibacter turnerae T7901]
Length = 93
Score = 87.5 bits (216), Expect = 6e-16, Method: Composition-based stats.
Identities = 31/88 (35%), Positives = 49/88 (55%), Gaps = 1/88 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ L+ + +LN + +V ++E++T ALA G RV++ G GSFSVR R A
Sbjct: 1 MRKTDLVKQLCT-LGELNRVQADDVVEAIVEQVTNALARGERVQLPGLGSFSVRHRNAHT 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKE 88
P + + + K FF+AGK L++
Sbjct: 60 GINPQTGEALRIAAKNQIFFKAGKRLRD 87
>gi|160947371|ref|ZP_02094538.1| hypothetical protein PEPMIC_01305 [Parvimonas micra ATCC 33270]
gi|158446505|gb|EDP23500.1| hypothetical protein PEPMIC_01305 [Parvimonas micra ATCC 33270]
Length = 92
Score = 87.5 bits (216), Expect = 6e-16, Method: Composition-based stats.
Identities = 34/93 (36%), Positives = 56/93 (60%), Gaps = 2/93 (2%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS L+ ++A+K K+ D E+ +N ++ + + L G +V++ GFG+F R+R AR
Sbjct: 1 MNKSELLASMAEK-GKITKVDAERALNAFIQTVEETLVKGEKVQLVGFGTFEARERKARS 59
Query: 61 ARAPLA-QKVISVEEKMVPFFRAGKNLKERLNS 92
R P ++VI + P F+AGK+LKE +N
Sbjct: 60 GRNPRNPKEVIKIPASKAPVFKAGKSLKEIVNK 92
>gi|83311454|ref|YP_421718.1| integration host factor subunit alpha [Magnetospirillum
magneticum AMB-1]
gi|123740482|sp|Q2W4R6|IHFA_MAGMM RecName: Full=Integration host factor subunit alpha;
Short=IHF-alpha
gi|82946295|dbj|BAE51159.1| Bacterial nucleoid DNA-binding protein [Magnetospirillum
magneticum AMB-1]
Length = 106
Score = 87.5 bits (216), Expect = 6e-16, Method: Composition-based stats.
Identities = 26/91 (28%), Positives = 51/91 (56%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
+ ++ L + ++ L+ + ++ +L+E++ ALA G V+I FGSFSVR + R+
Sbjct: 6 ITRAQLSEAVYQE-VGLSRNESADLLEAVLDEISGALAKGDAVKISSFGSFSVRSKGQRI 64
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + + + + V FR + LK+++N
Sbjct: 65 GRNPKTGEEVPITPRRVLVFRPSQLLKKKIN 95
>gi|39935809|ref|NP_948085.1| integration host factor subunit alpha [Rhodopseudomonas palustris
CGA009]
gi|192291397|ref|YP_001992002.1| integration host factor subunit alpha [Rhodopseudomonas palustris
TIE-1]
gi|81698181|sp|Q6N676|IHFA_RHOPA RecName: Full=Integration host factor subunit alpha;
Short=IHF-alpha
gi|226709744|sp|B3QJM1|IHFA_RHOPT RecName: Full=Integration host factor subunit alpha;
Short=IHF-alpha
gi|39649662|emb|CAE28184.1| integration host factor alpha subunit [Rhodopseudomonas palustris
CGA009]
gi|192285146|gb|ACF01527.1| integration host factor, alpha subunit [Rhodopseudomonas
palustris TIE-1]
Length = 118
Score = 87.5 bits (216), Expect = 6e-16, Method: Composition-based stats.
Identities = 25/92 (27%), Positives = 46/92 (50%), Gaps = 1/92 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
+ L + +K L+ + V ++L+E+T L G V++ FGSF VR++ R+
Sbjct: 7 TRVDLCEAVYQK-VGLSRTESSAFVELVLKEITDCLERGETVKLSSFGSFLVRQKGQRIG 65
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLNSP 93
R P + + + V F+ LK+R+N+
Sbjct: 66 RNPKTGTEVPISPRRVMVFKPSAILKQRINAN 97
>gi|83643450|ref|YP_431885.1| nucleoid DNA-binding protein [Hahella chejuensis KCTC 2396]
gi|83631493|gb|ABC27460.1| Bacterial nucleoid DNA-binding protein [Hahella chejuensis KCTC
2396]
Length = 91
Score = 87.5 bits (216), Expect = 6e-16, Method: Composition-based stats.
Identities = 29/92 (31%), Positives = 46/92 (50%), Gaps = 1/92 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K L IA + L+ +++N L +E+ A++ V + GFG+FS R R+AR
Sbjct: 1 MRKPELAAAIAART-NLSKSKAAEVLNALTDEIADAVSRNETVSLIGFGTFSQRNRSART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
+ P I + F+AGK LK+ +N
Sbjct: 60 GKNPKTGAAIKIPASKTVGFKAGKLLKDAVNK 91
>gi|189345899|ref|YP_001942428.1| histone family protein DNA-binding protein [Chlorobium limicola
DSM 245]
gi|189340046|gb|ACD89449.1| histone family protein DNA-binding protein [Chlorobium limicola
DSM 245]
Length = 102
Score = 87.5 bits (216), Expect = 6e-16, Method: Composition-based stats.
Identities = 32/89 (35%), Positives = 51/89 (57%), Gaps = 1/89 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ L+ IA K + + E +V+ L E + ++L G R+EIRGFGSF++R + R A
Sbjct: 6 TKADLVNAIAHKT-GMTKNETEAVVDCLFESIIESLKAGKRIEIRGFGSFNIRHKNLRQA 64
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P + ++V+ K VP F+ K K +
Sbjct: 65 RNPRTGEKVTVDPKNVPTFKISKEFKHAV 93
>gi|285017391|ref|YP_003375102.1| DNA-binding protein hu (histone-like protein hu) [Xanthomonas
albilineans GPE PC73]
gi|283472609|emb|CBA15114.1| probable dna-binding protein hu (histone-like protein hu)
[Xanthomonas albilineans]
Length = 90
Score = 87.5 bits (216), Expect = 6e-16, Method: Composition-based stats.
Identities = 30/91 (32%), Positives = 45/91 (49%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ L ++ + + V+ + E+T+AL G V + GFG+F VR RA R
Sbjct: 1 MNKAEL-NDAIAAAADISKAEAGRAVDAFVSEVTKALKKGDSVTLVGFGTFQVRDRAERT 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P I + P F+AGK LK+ +N
Sbjct: 60 GRNPKTGDSIKIAASKNPTFKAGKALKDAVN 90
>gi|118581076|ref|YP_902326.1| histone family protein DNA-binding protein [Pelobacter
propionicus DSM 2379]
gi|118503786|gb|ABL00269.1| histone family protein DNA-binding protein [Pelobacter
propionicus DSM 2379]
Length = 91
Score = 87.5 bits (216), Expect = 6e-16, Method: Composition-based stats.
Identities = 28/88 (31%), Positives = 47/88 (53%), Gaps = 1/88 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ L+ +A+ + + EK + +E +T+A+ G +V + GFG+FS RAAR+
Sbjct: 1 MTKAELVARMAE-SGDITKAAAEKALGGFIEAVTEAIKAGEKVTLTGFGTFSAVTRAARI 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKE 88
R P + + + K F GK LK+
Sbjct: 60 GRNPATGQELQIAAKTSAKFSPGKELKD 87
>gi|310657656|ref|YP_003935377.1| hu, DNA-binding transcriptional regulator subunit beta
[Clostridium sticklandii DSM 519]
gi|308824434|emb|CBH20472.1| HU, DNA-binding transcriptional regulator, beta subunit
[Clostridium sticklandii]
Length = 102
Score = 87.5 bits (216), Expect = 6e-16, Method: Composition-based stats.
Identities = 33/93 (35%), Positives = 55/93 (59%), Gaps = 2/93 (2%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ L+ +A+K+ + +D E +N + + +AL G +V++ GFG+F R+RAAR
Sbjct: 1 MNKAELVAKMAEKS-GMTKKDTEVALNSFMASVEEALVAGEKVQLVGFGTFETRERAARE 59
Query: 61 ARAPLAQK-VISVEEKMVPFFRAGKNLKERLNS 92
R P + I + P F+AGK LKE++N+
Sbjct: 60 GRNPRDPEKKIKIPASKAPVFKAGKGLKEKVNA 92
>gi|217976838|ref|YP_002360985.1| integration host factor, alpha subunit [Methylocella silvestris
BL2]
gi|217502214|gb|ACK49623.1| integration host factor, alpha subunit [Methylocella silvestris
BL2]
Length = 112
Score = 87.5 bits (216), Expect = 6e-16, Method: Composition-based stats.
Identities = 26/98 (26%), Positives = 50/98 (51%), Gaps = 1/98 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
+ L ++ + L+ ++ +V M+L E++ ALA G V++ FGSF VR ++ R+
Sbjct: 16 TRVDLAESVY-RCVGLSRKESAALVQMVLNELSDALAEGETVKLSSFGSFVVRSKSERIG 74
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDSTLSN 99
R P + + ++ V F+ LK R+N + +
Sbjct: 75 RNPKTGIEVPITQRRVLVFKPSSVLKARVNGEAAEDED 112
>gi|302560391|ref|ZP_07312733.1| DNA-binding protein HU [Streptomyces griseoflavus Tu4000]
gi|302478009|gb|EFL41102.1| DNA-binding protein HU [Streptomyces griseoflavus Tu4000]
Length = 93
Score = 87.5 bits (216), Expect = 6e-16, Method: Composition-based stats.
Identities = 25/90 (27%), Positives = 42/90 (46%), Gaps = 2/90 (2%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGG-RVEIRGFGSFSVRKRAAR 59
M +S L+ +A + ++ +D + ++ E + ++ G +V I GF +F RAAR
Sbjct: 1 MNRSELVAALADR-AEVTRKDADAVLAAFAEVVGDIVSKGDEKVTIPGFLTFERTHRAAR 59
Query: 60 LARAPLAQKVISVEEKMVPFFRAGKNLKER 89
AR P + I + AG LKE
Sbjct: 60 TARNPQTGEPIQIPAGYSVKVSAGSKLKEA 89
>gi|302344529|ref|YP_003809058.1| histone family protein DNA-binding protein [Desulfarculus baarsii
DSM 2075]
gi|301641142|gb|ADK86464.1| histone family protein DNA-binding protein [Desulfarculus baarsii
DSM 2075]
Length = 93
Score = 87.5 bits (216), Expect = 6e-16, Method: Composition-based stats.
Identities = 23/89 (25%), Positives = 42/89 (47%), Gaps = 1/89 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ +I + N +L + + L + +AL +G V + GFG +SVR + R
Sbjct: 4 TKADIIARVYA-NGQLTKAEAADSIEESLRLIKEALGSGDEVLVSGFGKWSVRDKNQRRG 62
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P +++ + V FR + LK ++
Sbjct: 63 RNPQTGDPLTLPPRRVVTFRPSRVLKAKI 91
>gi|255016156|ref|ZP_05288282.1| DNA-binding protein HU-beta [Bacteroides sp. 2_1_7]
gi|256842574|ref|ZP_05548076.1| integration host factor, alpha subunit [Parabacteroides sp. D13]
gi|256735930|gb|EEU49262.1| integration host factor, alpha subunit [Parabacteroides sp. D13]
Length = 98
Score = 87.5 bits (216), Expect = 6e-16, Method: Composition-based stats.
Identities = 24/92 (26%), Positives = 48/92 (52%), Gaps = 1/92 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M + L+ ++ ++ L V +VN L + + + G + ++GFGSF +++ RL
Sbjct: 8 MNRGELVQSLVEET-GLPKNVVRAVVNALPTVVAKGIREGESISMKGFGSFVPWQQSERL 66
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
AR P + + + ++ F+AG +L + LN
Sbjct: 67 ARNPKTGEEVMITPRVSVKFKAGSDLLKELNE 98
>gi|325479553|gb|EGC82649.1| DNA-binding protein HU-beta [Anaerococcus prevotii
ACS-065-V-Col13]
Length = 92
Score = 87.5 bits (216), Expect = 6e-16, Method: Composition-based stats.
Identities = 38/93 (40%), Positives = 54/93 (58%), Gaps = 2/93 (2%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS L+ I++K+ L + EK +N LE +T+AL G +V++ GFG+F VR R AR
Sbjct: 1 MNKSELLINISEKS-GLKKSESEKALNAFLETVTEALIEGEKVQLVGFGTFEVRDRKARE 59
Query: 61 ARAPLAQKV-ISVEEKMVPFFRAGKNLKERLNS 92
R P + I + P F+AGK LKE +N
Sbjct: 60 GRNPRKPEEVIQIPASKAPVFKAGKTLKEAVNK 92
>gi|320534610|ref|ZP_08035057.1| DNA-binding protein HU [Actinomyces sp. oral taxon 171 str.
F0337]
gi|325068381|ref|ZP_08127054.1| histone family protein DNA-binding protein [Actinomyces oris K20]
gi|326773734|ref|ZP_08233017.1| DNA-binding protein HU [Actinomyces viscosus C505]
gi|329947427|ref|ZP_08294631.1| DNA-binding protein HU-alpha [Actinomyces sp. oral taxon 170 str.
F0386]
gi|320133176|gb|EFW25677.1| DNA-binding protein HU [Actinomyces sp. oral taxon 171 str.
F0337]
gi|326636964|gb|EGE37867.1| DNA-binding protein HU [Actinomyces viscosus C505]
gi|328525177|gb|EGF52228.1| DNA-binding protein HU-alpha [Actinomyces sp. oral taxon 170 str.
F0386]
Length = 93
Score = 87.1 bits (215), Expect = 6e-16, Method: Composition-based stats.
Identities = 22/89 (24%), Positives = 38/89 (42%), Gaps = 1/89 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
++ LI IA+K L D + + + + + +A G V+I G +RAAR
Sbjct: 4 NRTELIAAIAEK-AGLTKTDADAFLGAFQDVLVENVAKGEAVKITGLMGIERVERAARTG 62
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P + I + G +LK+ +
Sbjct: 63 RNPRTGEEIQIPAGYGVKVTVGSSLKKAV 91
>gi|319779504|ref|YP_004130417.1| DNA-binding protein HU-beta [Taylorella equigenitalis MCE9]
gi|317109528|gb|ADU92274.1| DNA-binding protein HU-beta [Taylorella equigenitalis MCE9]
Length = 93
Score = 87.1 bits (215), Expect = 6e-16, Method: Composition-based stats.
Identities = 33/94 (35%), Positives = 51/94 (54%), Gaps = 1/94 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI IA+K L+ + ++ +E + ++ G V + GFG+F V RAAR
Sbjct: 1 MNKTELIEKIAEKT-DLSKAAAGRALDATIEAIKASMKKGQPVTLVGFGTFRVNVRAARK 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSPD 94
R P ++VI +++ VP F GK LKE +N
Sbjct: 60 GRNPRTKEVIQIKKAKVPKFVPGKALKEIVNGGK 93
>gi|258542723|ref|YP_003188156.1| histone-like DNA-binding protein HU [Acetobacter pasteurianus IFO
3283-01]
gi|329114677|ref|ZP_08243436.1| DNA-binding protein [Acetobacter pomorum DM001]
gi|256633801|dbj|BAH99776.1| histone-like bacterial DNA-binding protein HU [Acetobacter
pasteurianus IFO 3283-01]
gi|256636860|dbj|BAI02829.1| histone-like bacterial DNA-binding protein HU [Acetobacter
pasteurianus IFO 3283-03]
gi|256639913|dbj|BAI05875.1| histone-like bacterial DNA-binding protein HU [Acetobacter
pasteurianus IFO 3283-07]
gi|256642969|dbj|BAI08924.1| histone-like bacterial DNA-binding protein HU [Acetobacter
pasteurianus IFO 3283-22]
gi|256646024|dbj|BAI11972.1| histone-like bacterial DNA-binding protein HU [Acetobacter
pasteurianus IFO 3283-26]
gi|256649077|dbj|BAI15018.1| histone-like bacterial DNA-binding protein HU [Acetobacter
pasteurianus IFO 3283-32]
gi|256652064|dbj|BAI17998.1| histone-like bacterial DNA-binding protein HU [Acetobacter
pasteurianus IFO 3283-01-42C]
gi|256655121|dbj|BAI21048.1| histone-like bacterial DNA-binding protein HU [Acetobacter
pasteurianus IFO 3283-12]
gi|326696157|gb|EGE47839.1| DNA-binding protein [Acetobacter pomorum DM001]
Length = 95
Score = 87.1 bits (215), Expect = 7e-16, Method: Composition-based stats.
Identities = 22/89 (24%), Positives = 39/89 (43%), Gaps = 1/89 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K L+ +A+ L ++V+ + + +AL+ V + GFG+F R A
Sbjct: 6 NKQELVSAVAEA-VDLPKAKAGEVVDAVFGAIEKALSTKQEVRLVGFGTFVTATRKAAKG 64
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P + I + F+ GK LK+ +
Sbjct: 65 RNPRTGEEIDIPASTSVRFKPGKALKDAV 93
>gi|172055154|ref|YP_001806481.1| DNA binding protein HU [Cyanothece sp. ATCC 51142]
gi|171701435|gb|ACB54415.1| DNA binding protein HU [Cyanothece sp. ATCC 51142]
Length = 92
Score = 87.1 bits (215), Expect = 7e-16, Method: Composition-based stats.
Identities = 28/92 (30%), Positives = 47/92 (51%), Gaps = 1/92 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K L+ IA + + V KI+N E + + +ANG ++ + GFG+F R R R
Sbjct: 1 MNKEQLVKAIAAETGQ-PQSVVTKILNATTETIVETVANGDKITLVGFGTFEPRDRKERQ 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
+ P + +++ +P F A K KE++ S
Sbjct: 60 GKNPQTGEPLTIPATTIPAFSASKAFKEKVKS 91
>gi|309792618|ref|ZP_07687079.1| histone family protein DNA-binding protein [Oscillochloris
trichoides DG6]
gi|308225340|gb|EFO79107.1| histone family protein DNA-binding protein [Oscillochloris
trichoides DG6]
Length = 91
Score = 87.1 bits (215), Expect = 7e-16, Method: Composition-based stats.
Identities = 30/91 (32%), Positives = 50/91 (54%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ I +A+K ++ ++ + +V+ L+ +T+ALA G +V + GFG+F VR R AR
Sbjct: 1 MQKTDFIKAVAEK-AGVSQKETKLVVDSALDVITEALARGEKVTLTGFGTFEVRSRRARE 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
P + I + E P F A LK+ +
Sbjct: 60 GVNPQTRDKIHIPETKTPGFSASSTLKDAVK 90
>gi|304319842|ref|YP_003853485.1| integration host factor subunit alpha [Parvularcula bermudensis
HTCC2503]
gi|303298745|gb|ADM08344.1| integration host factor alpha subunit [Parvularcula bermudensis
HTCC2503]
Length = 112
Score = 87.1 bits (215), Expect = 7e-16, Method: Composition-based stats.
Identities = 27/95 (28%), Positives = 54/95 (56%), Gaps = 5/95 (5%)
Query: 1 MIK----SSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKR 56
M K + L T+ + N L+ Q+ +++ +LE++ Q L G +V++ FG+F +R++
Sbjct: 1 MTKTHTRADLCDTVYE-NVGLSRQECGELIESVLEKIAQHLEEGEQVKLSSFGTFQIREK 59
Query: 57 AARLARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R+ R P + +++ + V FRA LK+R++
Sbjct: 60 NERIGRNPKTGEQVAITPRRVLTFRASHVLKDRVD 94
>gi|58038572|ref|YP_190536.1| DNA-binding protein HU [Gluconobacter oxydans 621H]
gi|58000986|gb|AAW59880.1| DNA-binding protein HU [Gluconobacter oxydans 621H]
Length = 94
Score = 87.1 bits (215), Expect = 7e-16, Method: Composition-based stats.
Identities = 24/89 (26%), Positives = 36/89 (40%), Gaps = 1/89 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K LI +A L ++V+ + + LA V + GFGSF R A
Sbjct: 6 NKQELIAAVADA-ADLPKAKASEVVDAVFSTIEATLAKKQEVRLVGFGSFVTATRKAAKG 64
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P + I + F+ GK LK+ +
Sbjct: 65 RNPRTGEEIDIPASTSVRFKPGKGLKDAV 93
>gi|219128513|ref|XP_002184456.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217404257|gb|EEC44205.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 90
Score = 87.1 bits (215), Expect = 7e-16, Method: Composition-based stats.
Identities = 22/91 (24%), Positives = 45/91 (49%), Gaps = 1/91 (1%)
Query: 3 KSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLAR 62
K+ + +A++ + ++ E + +L+ + ++ G +V + GFGSF ++ RAAR R
Sbjct: 1 KADFVTALAEQTGQ-TKKESEGTLQAVLDILQAQVSEGKKVTLPGFGSFVLKSRAARKGR 59
Query: 63 APLAQKVISVEEKMVPFFRAGKNLKERLNSP 93
P + + + P F K K+ +N
Sbjct: 60 NPQTGEEMQIAASKSPGFTPSKAWKDMVNGK 90
>gi|118602598|ref|YP_903813.1| histone family protein DNA-binding protein [Candidatus Ruthia
magnifica str. Cm (Calyptogena magnifica)]
gi|118567537|gb|ABL02342.1| histone family protein DNA-binding protein [Candidatus Ruthia
magnifica str. Cm (Calyptogena magnifica)]
Length = 101
Score = 87.1 bits (215), Expect = 7e-16, Method: Composition-based stats.
Identities = 35/92 (38%), Positives = 52/92 (56%), Gaps = 1/92 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI ++ + L+ D + V ++L+E+TQ + +G +EIRGFG F + R R
Sbjct: 10 MKKTDLILNLSD-SSDLSKIDAKIAVEVILQELTQGIVSGQGIEIRGFGGFYKKHRKPRQ 68
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
P + V EK VPFF+ GK LKE +N
Sbjct: 69 GINPKTSERTQVGEKFVPFFKPGKLLKEIVNK 100
>gi|58979365|gb|AAW83347.1| DNA-binding protein HU [Campylobacter coli]
gi|58979379|gb|AAW83354.1| DNA-binding protein HU [Campylobacter coli]
Length = 96
Score = 87.1 bits (215), Expect = 7e-16, Method: Composition-based stats.
Identities = 32/86 (37%), Positives = 43/86 (50%), Gaps = 1/86 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ I +A + L +D + ++ +T LA G V GFG+FS +RAAR
Sbjct: 1 MTKADFISQVA-QTAGLTKKDATAATDAVISTITDVLAKGDSVSFIGFGTFSTTERAARE 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNL 86
AR P K I V V F+ GKNL
Sbjct: 60 ARVPSTGKTIKVPATRVAKFKVGKNL 85
>gi|58979373|gb|AAW83351.1| DNA-binding protein HU [Campylobacter coli]
Length = 96
Score = 87.1 bits (215), Expect = 7e-16, Method: Composition-based stats.
Identities = 32/86 (37%), Positives = 43/86 (50%), Gaps = 1/86 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ I +A + L +D + ++ +T LA G V GFG+FS +RAAR
Sbjct: 1 MTKADFISQVA-QTAGLTKKDATAATDAVISTITDVLAKGDSVSFIGFGTFSTTERAARE 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNL 86
AR P K I V V F+ GKNL
Sbjct: 60 ARVPSTGKTIKVPATRVAKFKVGKNL 85
>gi|298374475|ref|ZP_06984433.1| DNA-binding protein HU [Bacteroides sp. 3_1_19]
gi|298268843|gb|EFI10498.1| DNA-binding protein HU [Bacteroides sp. 3_1_19]
Length = 95
Score = 87.1 bits (215), Expect = 7e-16, Method: Composition-based stats.
Identities = 26/96 (27%), Positives = 45/96 (46%), Gaps = 1/96 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M + L+ T+A K + + + V E T+AL + G + + GFG+FS ++ R+
Sbjct: 1 MNRRELVKTLADKLS-VTQAEAMRFVQAWEETTTEALESDGSLMLLGFGTFSAWEQTERI 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDST 96
R P + + F+ GK L ++LN S
Sbjct: 60 GRNPKNGVAYMIRARKSVKFKPGKLLLKQLNVSSSK 95
>gi|218131482|ref|ZP_03460286.1| hypothetical protein BACEGG_03100 [Bacteroides eggerthii DSM
20697]
gi|217986414|gb|EEC52751.1| hypothetical protein BACEGG_03100 [Bacteroides eggerthii DSM
20697]
Length = 88
Score = 87.1 bits (215), Expect = 7e-16, Method: Composition-based stats.
Identities = 32/86 (37%), Positives = 49/86 (56%), Gaps = 1/86 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI +A + L+ D ++ ++ + +T+AL G +V + GFG+FSV +RA R+
Sbjct: 1 MNKSELISAMAAE-AGLSKADSKRALDAFIASVTKALKAGDKVALVGFGTFSVTERAGRV 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNL 86
P +K I + K V FRAG L
Sbjct: 60 GINPATKKPIQIPAKKVAKFRAGSEL 85
>gi|229825973|ref|ZP_04452042.1| hypothetical protein GCWU000182_01337 [Abiotrophia defectiva ATCC
49176]
gi|229789715|gb|EEP25829.1| hypothetical protein GCWU000182_01337 [Abiotrophia defectiva ATCC
49176]
Length = 95
Score = 87.1 bits (215), Expect = 7e-16, Method: Composition-based stats.
Identities = 37/96 (38%), Positives = 55/96 (57%), Gaps = 1/96 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ L+ IA+K +L D EK V ++ +T+ L GG+V++ GFG+F V KRAAR
Sbjct: 1 MNKAELVSAIAEKT-ELKKVDAEKAVKAFVDVVTEELKKGGKVQLVGFGTFEVSKRAARE 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDST 96
R P +K I + F+AGK LK+ +N+
Sbjct: 60 GRNPQTKKTIKIPASNAAKFKAGKALKDAINTKTKK 95
>gi|126661383|ref|ZP_01732446.1| Histone-like DNA-binding protein [Cyanothece sp. CCY0110]
gi|126617341|gb|EAZ88147.1| Histone-like DNA-binding protein [Cyanothece sp. CCY0110]
Length = 91
Score = 87.1 bits (215), Expect = 7e-16, Method: Composition-based stats.
Identities = 28/91 (30%), Positives = 47/91 (51%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K L+ IA + + V KI+N E + + +ANG ++ + GFG+F R R R
Sbjct: 1 MNKEQLVKAIAAETGQ-PQSVVTKILNATTETIVETVANGDKLTLVGFGTFEPRPRKERQ 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
+ P + +++ +P F AGK KE++
Sbjct: 60 GKNPQTGESLTIPATTIPAFSAGKAFKEKVK 90
>gi|29829226|ref|NP_823860.1| histone-like DNA-binding protein [Streptomyces avermitilis
MA-4680]
gi|29606332|dbj|BAC70395.1| putative histone-like DNA-binding protein [Streptomyces
avermitilis MA-4680]
Length = 217
Score = 87.1 bits (215), Expect = 7e-16, Method: Composition-based stats.
Identities = 32/95 (33%), Positives = 49/95 (51%), Gaps = 2/95 (2%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ L+ IA K Q V+ +L+ + +A+ G RV + GFGSF R AR
Sbjct: 1 MNKAQLVEAIADKVGG--RQQAADAVDAVLDAIVRAVVGGDRVSVTGFGSFEKVDRPARY 58
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDS 95
AR P + + V++ VP FRAG+ K+ ++
Sbjct: 59 ARNPQTGERVRVKKTSVPRFRAGQGFKDLVSGSKK 93
>gi|332525932|ref|ZP_08402073.1| integration host factor alpha-subunit [Rubrivivax benzoatilyticus
JA2]
gi|332109483|gb|EGJ10406.1| integration host factor alpha-subunit [Rubrivivax benzoatilyticus
JA2]
Length = 119
Score = 87.1 bits (215), Expect = 7e-16, Method: Composition-based stats.
Identities = 24/89 (26%), Positives = 45/89 (50%), Gaps = 1/89 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ L + + LN ++ + +V E + L G V++ GFG+F++R++A R
Sbjct: 21 TKAELADLLFDRL-GLNKRESKDMVEAFFEIVHGTLVEGDDVKLSGFGNFNIRRKAPRPG 79
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P ++I ++ + V F A LK +
Sbjct: 80 RNPRTGELIPIKARNVVTFHASHKLKAIV 108
>gi|261415071|ref|YP_003248754.1| histone family protein DNA-binding protein [Fibrobacter
succinogenes subsp. succinogenes S85]
gi|261371527|gb|ACX74272.1| histone family protein DNA-binding protein [Fibrobacter
succinogenes subsp. succinogenes S85]
gi|302326666|gb|ADL25867.1| DNA-binding protein HU [Fibrobacter succinogenes subsp.
succinogenes S85]
Length = 124
Score = 87.1 bits (215), Expect = 7e-16, Method: Composition-based stats.
Identities = 33/100 (33%), Positives = 59/100 (59%), Gaps = 1/100 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
+ K SLI IA K+ D++ +V L+ + + L G +EIRGFG+F+ + R AR
Sbjct: 4 ITKQSLIQEIA-KSTGFVRNDIKIVVEQFLDLLGEKLIEGNTIEIRGFGTFACKPRKARP 62
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDSTLSNS 100
AR P + + ++E++VP F+ ++K+++NS + L +
Sbjct: 63 ARNPRTGETVLIDERLVPTFKFSNDIKDKINSLEGILGEA 102
>gi|91777072|ref|YP_546828.1| histone-like DNA-binding protein [Methylobacillus flagellatus KT]
gi|91711059|gb|ABE50987.1| histone-like DNA-binding protein [Methylobacillus flagellatus KT]
Length = 90
Score = 87.1 bits (215), Expect = 7e-16, Method: Composition-based stats.
Identities = 34/91 (37%), Positives = 47/91 (51%), Gaps = 2/91 (2%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS L+ I K + E I++ L + + LA GG V + G G SV +RAAR
Sbjct: 1 MKKSELVALI--KPANTSAAVTESILDALGSVVQEQLARGGEVTLPGIGKLSVTERAARA 58
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P ++I +E K P F A K LK+ +N
Sbjct: 59 GRNPRTGEIIPIEAKKTPKFSAAKALKDAVN 89
>gi|193215171|ref|YP_001996370.1| histone family protein DNA-binding protein [Chloroherpeton
thalassium ATCC 35110]
gi|193088648|gb|ACF13923.1| histone family protein DNA-binding protein [Chloroherpeton
thalassium ATCC 35110]
Length = 100
Score = 87.1 bits (215), Expect = 7e-16, Method: Composition-based stats.
Identities = 34/90 (37%), Positives = 55/90 (61%), Gaps = 1/90 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ ++ IA + L Q+ E +V+ +E + +AL G R+EIRGFG+++VRK+ RL
Sbjct: 1 MTKADIVSIIASRT-GLTKQETETVVDGFIEAVIEALKAGERIEIRGFGTYNVRKKNKRL 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
AR P + + ++EK VP F+ K K +
Sbjct: 60 ARNPRTGEKVVIDEKYVPTFKISKEFKSAV 89
>gi|21673134|ref|NP_661199.1| DNA-binding protein HU-alpha, putative [Chlorobium tepidum TLS]
gi|21646210|gb|AAM71541.1| DNA-binding protein HU-alpha, putative [Chlorobium tepidum TLS]
Length = 101
Score = 87.1 bits (215), Expect = 7e-16, Method: Composition-based stats.
Identities = 33/89 (37%), Positives = 51/89 (57%), Gaps = 1/89 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ L+ IA++ L + E +V+ L E + +L G R+EIRGFGSF++R + R A
Sbjct: 6 TKADLVNVIAQRT-GLTKNETESVVDCLFESIIDSLKAGKRIEIRGFGSFNIRYKNLRQA 64
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P + ++VE K VP F+ K K +
Sbjct: 65 RNPRTGEKVTVEPKNVPTFKISKEFKHAV 93
>gi|57504971|ref|ZP_00370923.1| DNA-binding protein HU [Campylobacter coli RM2228]
gi|305432029|ref|ZP_07401196.1| DNA-binding protein HU [Campylobacter coli JV20]
gi|57019243|gb|EAL55949.1| DNA-binding protein HU [Campylobacter coli RM2228]
gi|58979339|gb|AAW83334.1| DNA-binding protein HU [Campylobacter coli]
gi|58979349|gb|AAW83339.1| DNA-binding protein HU [Campylobacter coli]
gi|58979351|gb|AAW83340.1| DNA-binding protein HU [Campylobacter coli]
gi|58979353|gb|AAW83341.1| DNA-binding protein HU [Campylobacter coli]
gi|58979355|gb|AAW83342.1| DNA-binding protein HU [Campylobacter coli]
gi|58979357|gb|AAW83343.1| DNA-binding protein HU [Campylobacter coli]
gi|58979363|gb|AAW83346.1| DNA-binding protein HU [Campylobacter coli]
gi|58979377|gb|AAW83353.1| DNA-binding protein HU [Campylobacter coli]
gi|58979393|gb|AAW83361.1| DNA-binding protein HU [Campylobacter coli]
gi|58979395|gb|AAW83362.1| DNA-binding protein HU [Campylobacter coli]
gi|58979409|gb|AAW83369.1| DNA-binding protein HU [Campylobacter coli]
gi|58979413|gb|AAW83371.1| DNA-binding protein HU [Campylobacter coli]
gi|58979463|gb|AAW83396.1| DNA-binding protein HU [Campylobacter coli]
gi|58979465|gb|AAW83397.1| DNA-binding protein HU [Campylobacter coli]
gi|58979467|gb|AAW83398.1| DNA-binding protein HU [Campylobacter coli]
gi|58979571|gb|AAW83450.1| DNA-binding protein HU [Campylobacter coli]
gi|58979573|gb|AAW83451.1| DNA-binding protein HU [Campylobacter coli]
gi|304445113|gb|EFM37759.1| DNA-binding protein HU [Campylobacter coli JV20]
Length = 96
Score = 87.1 bits (215), Expect = 7e-16, Method: Composition-based stats.
Identities = 32/86 (37%), Positives = 43/86 (50%), Gaps = 1/86 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ I +A + L +D + ++ +T LA G V GFG+FS +RAAR
Sbjct: 1 MTKADFISQVA-QTAGLTKKDATAATDAVISTITDVLAKGDSVSFIGFGTFSTAERAARE 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNL 86
AR P K I V V F+ GKNL
Sbjct: 60 ARVPSTGKTIKVPATRVAKFKVGKNL 85
>gi|126661201|ref|ZP_01732276.1| Histone-like DNA-binding protein [Cyanothece sp. CCY0110]
gi|126617496|gb|EAZ88290.1| Histone-like DNA-binding protein [Cyanothece sp. CCY0110]
Length = 91
Score = 87.1 bits (215), Expect = 7e-16, Method: Composition-based stats.
Identities = 28/91 (30%), Positives = 47/91 (51%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K L+ IA + + V KI+N E + + +ANG ++ + GFG+F R R R
Sbjct: 1 MNKEQLVKAIAAETGQ-PQSVVTKILNATTETIVETVANGDKLTLVGFGTFEPRPRKERQ 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
+ P + +++ +P F AGK KE++
Sbjct: 60 GKNPQTGEPLTIPATTIPAFSAGKIFKEKVK 90
>gi|118580717|ref|YP_901967.1| histone family protein DNA-binding protein [Pelobacter
propionicus DSM 2379]
gi|118503427|gb|ABK99909.1| histone family protein DNA-binding protein [Pelobacter
propionicus DSM 2379]
Length = 97
Score = 87.1 bits (215), Expect = 8e-16, Method: Composition-based stats.
Identities = 22/98 (22%), Positives = 51/98 (52%), Gaps = 1/98 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ ++ I +K + ++ ++V + + L G +++I GFG+F V+++A R
Sbjct: 1 MTKADIVERIHQKI-GFSKKESAEMVETVFSIIKSTLETGEKIKIAGFGNFVVKQKADRR 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDSTLS 98
R P + I++ + + F+ + LK +N ++ +
Sbjct: 60 GRNPQTGETITIAARRILTFKPSQVLKNAINVENAESA 97
>gi|325982744|ref|YP_004295146.1| histone family protein DNA-binding protein [Nitrosomonas sp.
AL212]
gi|325532263|gb|ADZ26984.1| histone family protein DNA-binding protein [Nitrosomonas sp.
AL212]
Length = 90
Score = 87.1 bits (215), Expect = 8e-16, Method: Composition-based stats.
Identities = 34/91 (37%), Positives = 46/91 (50%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI IA K+ K++ ++ L + AL V + GFG+F V RAAR
Sbjct: 1 MNKSELIEAIA-KSAKISKASAGSALDGALTAIKGALKKNESVTLVGFGTFKVGTRAART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P I ++ VP F AGK LK+ +N
Sbjct: 60 GRNPRTGAAIKIKAAKVPKFSAGKALKDAVN 90
>gi|206890254|ref|YP_002249563.1| DNA-binding protein HU 1 [Thermodesulfovibrio yellowstonii DSM
11347]
gi|206742192|gb|ACI21249.1| DNA-binding protein HU 1 [Thermodesulfovibrio yellowstonii DSM
11347]
Length = 92
Score = 87.1 bits (215), Expect = 8e-16, Method: Composition-based stats.
Identities = 35/92 (38%), Positives = 54/92 (58%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI ++KK L + +E I++M+ + M + L+ G ++EIRGF +F V++R R+
Sbjct: 1 MKKSELIERVSKKVDILTKKQIETIIDMIFDCMIETLSRGEKIEIRGFANFKVKQRPERI 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
AR P + I V + F+ K LKE LN
Sbjct: 61 ARNPKTGEQIKVPTQRAINFKMSKALKEALNK 92
>gi|188997447|ref|YP_001931698.1| histone family protein DNA-binding protein [Sulfurihydrogenibium
sp. YO3AOP1]
gi|188932514|gb|ACD67144.1| histone family protein DNA-binding protein [Sulfurihydrogenibium
sp. YO3AOP1]
Length = 92
Score = 87.1 bits (215), Expect = 8e-16, Method: Composition-based stats.
Identities = 36/93 (38%), Positives = 53/93 (56%), Gaps = 1/93 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI +A+K L + E+ VN+ +E + +AL+ G R I G G F+V++R AR
Sbjct: 1 MTKSELIAKVAEK-AGLKKSEAERAVNVAIEALVEALSKGERTAIPGLGVFNVKERKARK 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSP 93
R P K I + ++ V F A K+LKE +N
Sbjct: 60 GRNPRTGKEIKIPKRKVVAFTAAKSLKEAVNKK 92
>gi|320104532|ref|YP_004180123.1| histone family protein DNA-binding protein [Isosphaera pallida
ATCC 43644]
gi|319751814|gb|ADV63574.1| histone family protein DNA-binding protein [Isosphaera pallida
ATCC 43644]
Length = 126
Score = 87.1 bits (215), Expect = 8e-16, Method: Composition-based stats.
Identities = 29/90 (32%), Positives = 50/90 (55%), Gaps = 1/90 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K ++ I+ + L ++IV + L+ + Q L G++E+R FG F V++RAAR
Sbjct: 1 MTKKDIVKRISDE-VGLTQLKTKQIVQLTLDAIIQTLVQEGQIELRNFGVFKVKRRAARK 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
AR P ++V K V F+ GK +++ +
Sbjct: 60 ARNPRTGAKVTVPAKTVVTFKPGKEMEDLV 89
>gi|258542774|ref|YP_003188207.1| integration host factor DNA-binding subunit alpha [Acetobacter
pasteurianus IFO 3283-01]
gi|329114627|ref|ZP_08243386.1| Integration host factor subunit alpha [Acetobacter pomorum DM001]
gi|256633852|dbj|BAH99827.1| integration host factor DNA-binding alpha subunit [Acetobacter
pasteurianus IFO 3283-01]
gi|256636911|dbj|BAI02880.1| integration host factor DNA-binding alpha subunit [Acetobacter
pasteurianus IFO 3283-03]
gi|256639964|dbj|BAI05926.1| integration host factor DNA-binding alpha subunit [Acetobacter
pasteurianus IFO 3283-07]
gi|256643020|dbj|BAI08975.1| integration host factor DNA-binding alpha subunit [Acetobacter
pasteurianus IFO 3283-22]
gi|256646075|dbj|BAI12023.1| integration host factor DNA-binding alpha subunit [Acetobacter
pasteurianus IFO 3283-26]
gi|256649128|dbj|BAI15069.1| integration host factor DNA-binding alpha subunit [Acetobacter
pasteurianus IFO 3283-32]
gi|256652115|dbj|BAI18049.1| integration host factor DNA-binding alpha subunit [Acetobacter
pasteurianus IFO 3283-01-42C]
gi|256655172|dbj|BAI21099.1| integration host factor DNA-binding alpha subunit [Acetobacter
pasteurianus IFO 3283-12]
gi|326696107|gb|EGE47789.1| Integration host factor subunit alpha [Acetobacter pomorum DM001]
Length = 106
Score = 87.1 bits (215), Expect = 8e-16, Method: Composition-based stats.
Identities = 28/92 (30%), Positives = 49/92 (53%), Gaps = 1/92 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
++SLI I ++ L+ ++ ++ +LE + AL G V+I GFG+FSVRK+ R
Sbjct: 5 TRASLIEQIYQQ-VGLSRKESSVLLEDVLETVMDALERGESVKISGFGTFSVRKKGQRSG 63
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLNSP 93
R P + + + + V FR + L+ +N
Sbjct: 64 RNPKTGEEVPILPRSVLVFRPSQLLRAEVNHE 95
>gi|212692210|ref|ZP_03300338.1| hypothetical protein BACDOR_01706 [Bacteroides dorei DSM 17855]
gi|212665087|gb|EEB25659.1| hypothetical protein BACDOR_01706 [Bacteroides dorei DSM 17855]
Length = 90
Score = 87.1 bits (215), Expect = 8e-16, Method: Composition-based stats.
Identities = 29/91 (31%), Positives = 48/91 (52%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ I +A + L+ D +K V + +T+AL G +V + GFG+FSV +R+AR
Sbjct: 1 MNKADFISAVAAE-AGLSKVDAKKAVEAFVSTVTKALKEGDKVSLIGFGTFSVAERSART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
P + I++ K V F+ G L + +
Sbjct: 60 GINPSTKATITIPAKKVTKFKPGAELADAIK 90
>gi|88859784|ref|ZP_01134424.1| integration host factor (IHF), alpha subunit, DNA-bending
protein, DNA replication [Pseudoalteromonas tunicata
D2]
gi|88818801|gb|EAR28616.1| integration host factor (IHF), alpha subunit, DNA-bending
protein, DNA replication [Pseudoalteromonas tunicata
D2]
Length = 99
Score = 87.1 bits (215), Expect = 8e-16, Method: Composition-based stats.
Identities = 25/89 (28%), Positives = 47/89 (52%), Gaps = 1/89 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ + + K +N +D +++V E + AL +G ++++ GFG+F +R + R
Sbjct: 4 TKADIAEHLFVKL-GINKKDAKELVESFFENIRAALESGEQIKLSGFGNFDLRDKNQRPG 62
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P + I + + V FR G+ LK R+
Sbjct: 63 RNPKTGEDIPISARRVVTFRPGQKLKTRV 91
>gi|237745476|ref|ZP_04575956.1| integration host factor subunit alpha [Oxalobacter formigenes
HOxBLS]
gi|229376827|gb|EEO26918.1| integration host factor subunit alpha [Oxalobacter formigenes
HOxBLS]
Length = 125
Score = 87.1 bits (215), Expect = 8e-16, Method: Composition-based stats.
Identities = 26/91 (28%), Positives = 46/91 (50%), Gaps = 1/91 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ L + ++ LN ++ +++V EE+ AL G V++ GFG+F +R + R
Sbjct: 34 TKAELTELLYEQ-VGLNKREAKEMVETFFEEICCALERGEMVKLSGFGNFQLRDKPQRPG 92
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P + I + + V F A + LK + S
Sbjct: 93 RNPRTGEEIPITARRVVTFHASQKLKSMVES 123
>gi|218887119|ref|YP_002436440.1| histone family protein DNA-binding protein [Desulfovibrio
vulgaris str. 'Miyazaki F']
gi|218758073|gb|ACL08972.1| histone family protein DNA-binding protein [Desulfovibrio
vulgaris str. 'Miyazaki F']
Length = 95
Score = 87.1 bits (215), Expect = 8e-16, Method: Composition-based stats.
Identities = 27/93 (29%), Positives = 42/93 (45%), Gaps = 2/93 (2%)
Query: 2 IKSSLIGTIAKKNPKL--NYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAAR 59
K+ + + + P + EK + + +ANG V + G G+FSV +RAAR
Sbjct: 3 TKAEFVAALKEALPDVFVTKVSAEKAYDAFCSVLADGVANGAGVRLPGVGAFSVTERAAR 62
Query: 60 LARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P + IS+ + F A K L + LN
Sbjct: 63 TGRNPQTGQSISIPARKAVKFMAAKTLVDGLNK 95
>gi|222824223|ref|YP_002575797.1| DNA-binding protein HU [Campylobacter lari RM2100]
gi|58979407|gb|AAW83368.1| DNA-binding protein HU [Campylobacter lari]
gi|58979429|gb|AAW83379.1| DNA-binding protein HU [Campylobacter lari]
gi|222539445|gb|ACM64546.1| DNA-binding protein HU [Campylobacter lari RM2100]
Length = 100
Score = 87.1 bits (215), Expect = 8e-16, Method: Composition-based stats.
Identities = 31/86 (36%), Positives = 43/86 (50%), Gaps = 1/86 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ I +A + L +D + ++ +T LA G + GFG+FSV +RAAR
Sbjct: 1 MTKADFISQVA-QTAGLTKKDAGAATDAVIATITDVLAKGDSISFIGFGTFSVAERAARE 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNL 86
AR P I V V F+ GKNL
Sbjct: 60 ARVPSTGATIKVPATKVAKFKVGKNL 85
>gi|325680359|ref|ZP_08159917.1| DNA-binding protein HU [Ruminococcus albus 8]
gi|324107952|gb|EGC02210.1| DNA-binding protein HU [Ruminococcus albus 8]
Length = 110
Score = 86.7 bits (214), Expect = 8e-16, Method: Composition-based stats.
Identities = 32/90 (35%), Positives = 54/90 (60%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K + +++KNP L + V ++V+ ++ + + +A G V GFG+FS + RAAR
Sbjct: 1 MNKPEFVNAVSEKNPSLTKKTVTEVVDSVISTIQETVAAGDSVSFVGFGTFSSKVRAARE 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
+ P ++ I +EEK VP F+AGK K+ +
Sbjct: 61 SINPTTKEKIHIEEKTVPTFKAGKAFKDAV 90
>gi|113970148|ref|YP_733941.1| integration host factor subunit alpha [Shewanella sp. MR-4]
gi|114047662|ref|YP_738212.1| integration host factor subunit alpha [Shewanella sp. MR-7]
gi|123029698|sp|Q0HJ83|IHFA_SHESM RecName: Full=Integration host factor subunit alpha;
Short=IHF-alpha
gi|123030574|sp|Q0HUQ0|IHFA_SHESR RecName: Full=Integration host factor subunit alpha;
Short=IHF-alpha
gi|113884832|gb|ABI38884.1| integration host factor, alpha subunit [Shewanella sp. MR-4]
gi|113889104|gb|ABI43155.1| integration host factor, alpha subunit [Shewanella sp. MR-7]
Length = 98
Score = 86.7 bits (214), Expect = 8e-16, Method: Composition-based stats.
Identities = 25/94 (26%), Positives = 50/94 (53%), Gaps = 1/94 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ + + + +N + +++V EE+ AL +G +V++ GFG+F +R + R
Sbjct: 4 TKAEMAEHLFE-TLGINKRVAKEMVESFFEEIRGALESGEQVKLSGFGNFDLRDKNQRPG 62
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDS 95
R P + I + + V FR G+ LK R+ + ++
Sbjct: 63 RNPKTGEDIPISARRVVTFRPGQKLKTRVEASNA 96
>gi|294629628|ref|ZP_06708188.1| DNA-binding protein HU [Streptomyces sp. e14]
gi|302551775|ref|ZP_07304117.1| integration host factor, alpha subunit [Streptomyces
viridochromogenes DSM 40736]
gi|292832961|gb|EFF91310.1| DNA-binding protein HU [Streptomyces sp. e14]
gi|302469393|gb|EFL32486.1| integration host factor, alpha subunit [Streptomyces
viridochromogenes DSM 40736]
Length = 93
Score = 86.7 bits (214), Expect = 8e-16, Method: Composition-based stats.
Identities = 24/94 (25%), Positives = 42/94 (44%), Gaps = 2/94 (2%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGG-RVEIRGFGSFSVRKRAAR 59
M +S L+ +A + ++ +D + ++ + + ++ G +V I GF +F RAAR
Sbjct: 1 MNRSELVAALADR-AEVTRKDADAVLAAFADVVGDIVSKGDEKVTIPGFLTFERTHRAAR 59
Query: 60 LARAPLAQKVISVEEKMVPFFRAGKNLKERLNSP 93
AR P + I + AG LKE
Sbjct: 60 TARNPQTGEPIQIPAGYSVKVSAGSKLKEAAKGK 93
>gi|291615208|ref|YP_003525365.1| histone family protein DNA-binding protein [Sideroxydans
lithotrophicus ES-1]
gi|291585320|gb|ADE12978.1| histone family protein DNA-binding protein [Sideroxydans
lithotrophicus ES-1]
Length = 94
Score = 86.7 bits (214), Expect = 8e-16, Method: Composition-based stats.
Identities = 32/95 (33%), Positives = 47/95 (49%), Gaps = 1/95 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M + LI +A K + D ++ + L++ +T L G V + GFG+F VRKRAAR
Sbjct: 1 MNRKELIDALATKT-GSSKADADRNIAALIDIVTATLKKGDNVALVGFGTFEVRKRAARN 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDS 95
R P I ++ P F+AG LK +N
Sbjct: 60 GRNPSTGAAIKIKASKQPAFKAGATLKAAVNGGKK 94
>gi|119475179|ref|ZP_01615532.1| probable DNA-binding protein [marine gamma proteobacterium
HTCC2143]
gi|119451382|gb|EAW32615.1| probable DNA-binding protein [marine gamma proteobacterium
HTCC2143]
Length = 90
Score = 86.7 bits (214), Expect = 8e-16, Method: Composition-based stats.
Identities = 29/91 (31%), Positives = 46/91 (50%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS L IA K + +++++ +L+E+T AL+ V + GFG+F R R AR
Sbjct: 1 MRKSDLATEIADK-ADIPADKAQQVLSAILDEITNALSRKESVSLIGFGTFEPRHRNARA 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
+ P + + F+ GK LKE +N
Sbjct: 60 GKNPQTGVALQIAASNTVGFKPGKALKEAVN 90
>gi|119384600|ref|YP_915656.1| integration host factor, alpha subunit [Paracoccus denitrificans
PD1222]
gi|166918513|sp|A1B366|IHFA_PARDP RecName: Full=Integration host factor subunit alpha;
Short=IHF-alpha
gi|119374367|gb|ABL69960.1| integration host factor, alpha subunit [Paracoccus denitrificans
PD1222]
Length = 102
Score = 86.7 bits (214), Expect = 9e-16, Method: Composition-based stats.
Identities = 23/89 (25%), Positives = 46/89 (51%), Gaps = 1/89 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
+ L + ++ L+ + ++V +L ++ AL G +V+I FG+FSVR + R+
Sbjct: 7 TRMDLAEAVFRE-VGLSRHESAQLVESVLGHISDALVRGEQVKISSFGTFSVRDKNERIG 65
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P + + + + V FR +K+R+
Sbjct: 66 RNPKTGEEVPITPRRVLSFRPSHLMKDRV 94
>gi|258647295|ref|ZP_05734764.1| DNA-binding protein HU, beta subunit [Prevotella tannerae ATCC
51259]
gi|260852812|gb|EEX72681.1| DNA-binding protein HU, beta subunit [Prevotella tannerae ATCC
51259]
Length = 90
Score = 86.7 bits (214), Expect = 9e-16, Method: Composition-based stats.
Identities = 31/91 (34%), Positives = 47/91 (51%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS L+ IA + L+ D +K ++ LE + AL +V + GFG+F+V +R A
Sbjct: 1 MNKSELVSAIAA-SAGLSKVDSKKALDATLEAIAGALKANDKVALLGFGTFAVTERPAHD 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
P ++ I + K V F+AG L LN
Sbjct: 60 GVNPATKEKIHIPAKKVIKFKAGAELSGALN 90
>gi|323485131|ref|ZP_08090483.1| hypothetical protein HMPREF9474_02234 [Clostridium symbiosum
WAL-14163]
gi|323694024|ref|ZP_08108208.1| histone family protein DNA-binding protein [Clostridium symbiosum
WAL-14673]
gi|323401561|gb|EGA93907.1| hypothetical protein HMPREF9474_02234 [Clostridium symbiosum
WAL-14163]
gi|323501960|gb|EGB17838.1| histone family protein DNA-binding protein [Clostridium symbiosum
WAL-14673]
Length = 92
Score = 86.7 bits (214), Expect = 9e-16, Method: Composition-based stats.
Identities = 31/93 (33%), Positives = 51/93 (54%), Gaps = 1/93 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K L+ +++ K+ L + EK +N L+ + L++GG V++ GFG F V R R+
Sbjct: 1 MNKRQLVDSMSAKS-GLTTRQSEKALNGLMNVIHTELSSGGNVQLVGFGVFRVADRKDRI 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSP 93
AR P + + ++ + P FRAG LK +N
Sbjct: 60 ARNPQTGEAMKIKGRKAPVFRAGSTLKNVVNGK 92
>gi|299139526|ref|ZP_07032700.1| histone family protein DNA-binding protein [Acidobacterium sp.
MP5ACTX8]
gi|298598454|gb|EFI54618.1| histone family protein DNA-binding protein [Acidobacterium sp.
MP5ACTX8]
Length = 89
Score = 86.7 bits (214), Expect = 9e-16, Method: Composition-based stats.
Identities = 28/86 (32%), Positives = 42/86 (48%), Gaps = 1/86 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
MIK LI + ++ L E V+ + E M AL N R+E+RGFG F+V+ R +
Sbjct: 1 MIKQDLIQRVVERT-GLPRTKAEAAVDAIFEAMKNALGNSDRIELRGFGVFTVKPRKTGV 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNL 86
R P +++ F+ GK L
Sbjct: 60 GRNPRTGAEVTITPGKAVRFKPGKEL 85
>gi|297568603|ref|YP_003689947.1| histone family protein DNA-binding protein [Desulfurivibrio
alkaliphilus AHT2]
gi|296924518|gb|ADH85328.1| histone family protein DNA-binding protein [Desulfurivibrio
alkaliphilus AHT2]
Length = 90
Score = 86.7 bits (214), Expect = 9e-16, Method: Composition-based stats.
Identities = 34/91 (37%), Positives = 52/91 (57%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS L+ +A K ++ EK + L+ +T+AL G +V + GFG+FSV KRAAR
Sbjct: 1 MNKSELVEQMA-KAGGISKATAEKALAGALDGITKALKKGDKVTLVGFGTFSVTKRAARQ 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P K I+++ + V F+AG L + +
Sbjct: 60 GRNPQTGKPITIKARKVARFKAGSKLSDAVK 90
>gi|239930957|ref|ZP_04687910.1| DNA-binding protein HU (hs1) [Streptomyces ghanaensis ATCC 14672]
gi|291439334|ref|ZP_06578724.1| HSl protein [Streptomyces ghanaensis ATCC 14672]
gi|291342229|gb|EFE69185.1| HSl protein [Streptomyces ghanaensis ATCC 14672]
Length = 93
Score = 86.7 bits (214), Expect = 9e-16, Method: Composition-based stats.
Identities = 24/94 (25%), Positives = 42/94 (44%), Gaps = 2/94 (2%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGG-RVEIRGFGSFSVRKRAAR 59
M +S L+ +A + ++ +D + ++ E + ++ G +V + GF +F RAAR
Sbjct: 1 MNRSELVAALADR-AEVTRKDADAVLAAFAEVVGDIVSKGDEKVTVPGFLTFERTHRAAR 59
Query: 60 LARAPLAQKVISVEEKMVPFFRAGKNLKERLNSP 93
AR P + I + AG LKE
Sbjct: 60 TARNPQTGEPIQIPAGYSVKVSAGSKLKEAAKGK 93
>gi|150010105|ref|YP_001304848.1| DNA-binding protein HU-beta [Parabacteroides distasonis ATCC
8503]
gi|255012635|ref|ZP_05284761.1| DNA-binding protein HU-beta [Bacteroides sp. 2_1_7]
gi|301308155|ref|ZP_07214109.1| DNA-binding protein HU [Bacteroides sp. 20_3]
gi|149938529|gb|ABR45226.1| DNA-binding protein HU-beta [Parabacteroides distasonis ATCC
8503]
gi|300833625|gb|EFK64241.1| DNA-binding protein HU [Bacteroides sp. 20_3]
Length = 95
Score = 86.7 bits (214), Expect = 9e-16, Method: Composition-based stats.
Identities = 25/96 (26%), Positives = 45/96 (46%), Gaps = 1/96 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M + L+ T+A K + + + V E T+AL + G + + GFG+ S ++ R+
Sbjct: 1 MNRRELVKTLADKLS-VTQAEAMRFVQAWEETTTEALESDGSLMLLGFGTLSAWEQTERI 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDST 96
R P + + F+ GK L ++LN+ S
Sbjct: 60 GRNPKNGVAYMIRARKSVKFKPGKLLLKQLNASSSK 95
>gi|261337946|ref|ZP_05965830.1| DNA-binding protein HU [Bifidobacterium gallicum DSM 20093]
gi|270277441|gb|EFA23295.1| DNA-binding protein HU [Bifidobacterium gallicum DSM 20093]
Length = 93
Score = 86.7 bits (214), Expect = 9e-16, Method: Composition-based stats.
Identities = 25/89 (28%), Positives = 39/89 (43%), Gaps = 1/89 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
KS L+ IA+K+ L E VN + +A+ +G +++ G S RAAR
Sbjct: 4 NKSDLVSKIAQKS-NLTKAQAEAAVNAFQDVFVEAMKSGEGLKLTGLFSAERVPRAARTG 62
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P + I + AG LK+ +
Sbjct: 63 RNPRTGETIEIPATYGVRISAGSLLKKAV 91
>gi|158338987|ref|YP_001520164.1| DNA-binding protein HU [Acaryochloris marina MBIC11017]
gi|158309228|gb|ABW30845.1| DNA-binding protein HU [Acaryochloris marina MBIC11017]
Length = 93
Score = 86.7 bits (214), Expect = 9e-16, Method: Composition-based stats.
Identities = 28/90 (31%), Positives = 48/90 (53%), Gaps = 1/90 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K L+ +A K + + + ++ LE + +++++G +V + GFGSF R+R AR
Sbjct: 1 MNKGELVDAVADK-ASVTKKQADAVLTAALEAIVESVSSGEKVTLVGFGSFEPRERKARE 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P + + VP F AGK KE++
Sbjct: 60 GRNPKTGAKMKIPATKVPAFSAGKLFKEKV 89
>gi|124515663|gb|EAY57172.1| putative integration host factor, beta-subunit [Leptospirillum
rubarum]
gi|206602281|gb|EDZ38763.1| Putative integration host factor, beta-subunit [Leptospirillum
sp. Group II '5-way CG']
Length = 98
Score = 86.7 bits (214), Expect = 9e-16, Method: Composition-based stats.
Identities = 34/92 (36%), Positives = 49/92 (53%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M + LI IA+KN ++ D ++V L E M + G +EIR FG F + R R+
Sbjct: 1 MTRDDLIKRIAEKNAGISLSDSRELVLDLFESMKSVILEGESLEIRRFGVFEIHHRKPRI 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
AR P + +SV E+ FR GK LK R+ +
Sbjct: 61 ARNPRTGEKVSVGERKSLIFRPGKILKLRMKN 92
>gi|86749768|ref|YP_486264.1| integration host factor subunit alpha [Rhodopseudomonas palustris
HaA2]
gi|123004139|sp|Q2IWQ7|IHFA_RHOP2 RecName: Full=Integration host factor subunit alpha;
Short=IHF-alpha
gi|86572796|gb|ABD07353.1| integration host factor, alpha subunit [Rhodopseudomonas
palustris HaA2]
Length = 123
Score = 86.7 bits (214), Expect = 9e-16, Method: Composition-based stats.
Identities = 25/92 (27%), Positives = 46/92 (50%), Gaps = 1/92 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
+ L + +K L+ + V ++L+E+T L G V++ FGSF VR++ R+
Sbjct: 9 TRVDLCEAVYQK-VGLSRTESSAFVELVLKEITDCLEKGETVKLSSFGSFLVRQKGQRIG 67
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLNSP 93
R P + + + V F+ LK+R+N+
Sbjct: 68 RNPKTGTEVPISPRRVMVFKPSAILKQRINAN 99
>gi|78358396|ref|YP_389845.1| histone-like DNA-binding protein [Desulfovibrio desulfuricans
subsp. desulfuricans str. G20]
gi|78220801|gb|ABB40150.1| histone-like DNA-binding protein [Desulfovibrio desulfuricans
subsp. desulfuricans str. G20]
Length = 95
Score = 86.7 bits (214), Expect = 9e-16, Method: Composition-based stats.
Identities = 30/95 (31%), Positives = 47/95 (49%), Gaps = 4/95 (4%)
Query: 1 MIKSSL----IGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKR 56
M K+ L + +A K ++ V +++ L+ +T LA G V + GFG+F V +R
Sbjct: 1 MTKAELEMAVVEVLALNGIKATHKAVADVISATLDVITGELAGGDPVRLTGFGAFKVTRR 60
Query: 57 AARLARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
AR+ R P + + + F GK LKE LN
Sbjct: 61 TARIGRNPKTGEPVEIPASTGVKFSPGKTLKEALN 95
>gi|117920310|ref|YP_869502.1| integration host factor subunit alpha [Shewanella sp. ANA-3]
gi|166918528|sp|A0KWC7|IHFA_SHESA RecName: Full=Integration host factor subunit alpha;
Short=IHF-alpha
gi|117612642|gb|ABK48096.1| integration host factor, alpha subunit [Shewanella sp. ANA-3]
Length = 98
Score = 86.7 bits (214), Expect = 9e-16, Method: Composition-based stats.
Identities = 25/89 (28%), Positives = 47/89 (52%), Gaps = 1/89 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ + + + +N + +++V EE+ AL +G +V++ GFG+F +R + R
Sbjct: 4 TKAEMAEHLFE-TLGINKRVAKEMVESFFEEIRGALESGEQVKLSGFGNFDLRDKNQRPG 62
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P + I + + V FR G+ LK R+
Sbjct: 63 RNPKTGEDIPISARRVVTFRPGQKLKTRV 91
>gi|269958037|ref|YP_003327826.1| histone family protein DNA-binding protein [Xylanimonas
cellulosilytica DSM 15894]
gi|269306718|gb|ACZ32268.1| histone family protein DNA-binding protein [Xylanimonas
cellulosilytica DSM 15894]
Length = 93
Score = 86.7 bits (214), Expect = 9e-16, Method: Composition-based stats.
Identities = 27/89 (30%), Positives = 41/89 (46%), Gaps = 1/89 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
KS L+ IA K+ +L E +N E + ++LA G V++ G S +RAAR
Sbjct: 4 NKSELVSAIAAKS-ELTKAQAEDALNAFQEVLVESLAKGEAVKLTGLLSIERVERAARTG 62
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P + I + AG LK+ +
Sbjct: 63 RNPRTGEEIQIPAGFGVKVSAGSVLKKAV 91
>gi|24373647|ref|NP_717690.1| integration host factor, alpha subunit [Shewanella oneidensis
MR-1]
gi|81744784|sp|Q8EF98|IHFA_SHEON RecName: Full=Integration host factor subunit alpha;
Short=IHF-alpha
gi|24347991|gb|AAN55134.1|AE015650_4 integration host factor, alpha subunit [Shewanella oneidensis
MR-1]
Length = 98
Score = 86.7 bits (214), Expect = 9e-16, Method: Composition-based stats.
Identities = 25/89 (28%), Positives = 47/89 (52%), Gaps = 1/89 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ + + + +N + +++V EE+ AL +G +V++ GFG+F +R + R
Sbjct: 4 TKAEMAEHLFE-TLGINKRVAKEMVESFFEEIRGALESGEQVKLSGFGNFDLRDKNQRPG 62
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P + I + + V FR G+ LK R+
Sbjct: 63 RNPKTGEDIPISARRVVTFRPGQKLKTRV 91
>gi|254419022|ref|ZP_05032746.1| integration host factor, alpha subunit [Brevundimonas sp. BAL3]
gi|196185199|gb|EDX80175.1| integration host factor, alpha subunit [Brevundimonas sp. BAL3]
Length = 103
Score = 86.7 bits (214), Expect = 1e-15, Method: Composition-based stats.
Identities = 25/89 (28%), Positives = 48/89 (53%), Gaps = 1/89 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
++ L + ++ L+ Q+ +V LE + ++L G V++ GFG F VR++ AR+
Sbjct: 9 TRADLCEAVHEE-VGLSRQECSALVERTLELIVESLEQGDTVKLSGFGVFQVREKRARMG 67
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P + ++ + V FRA + +K R+
Sbjct: 68 RNPKTGEPAAINPRRVISFRASQIMKSRV 96
>gi|296140540|ref|YP_003647783.1| histone family protein DNA-binding protein [Tsukamurella
paurometabola DSM 20162]
gi|296028674|gb|ADG79444.1| histone family protein DNA-binding protein [Tsukamurella
paurometabola DSM 20162]
Length = 235
Score = 86.7 bits (214), Expect = 1e-15, Method: Composition-based stats.
Identities = 30/90 (33%), Positives = 46/90 (51%), Gaps = 1/90 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI + +K + + V +++ + +A+ G V I GFG F RKRAAR+
Sbjct: 1 MNKAELIEELTEKL-GTDRRTAGAAVEAIVDTIVRAVHAGDSVTITGFGVFEQRKRAARV 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
AR P + + V+ VP FR G K +
Sbjct: 60 ARNPRTGETVKVKPTSVPAFRPGAQFKAVI 89
>gi|218247718|ref|YP_002373089.1| histone family protein DNA-binding protein [Cyanothece sp. PCC
8801]
gi|257060945|ref|YP_003138833.1| histone family protein DNA-binding protein [Cyanothece sp. PCC
8802]
gi|218168196|gb|ACK66933.1| histone family protein DNA-binding protein [Cyanothece sp. PCC
8801]
gi|256591111|gb|ACV01998.1| histone family protein DNA-binding protein [Cyanothece sp. PCC
8802]
Length = 95
Score = 86.7 bits (214), Expect = 1e-15, Method: Composition-based stats.
Identities = 28/93 (30%), Positives = 50/93 (53%), Gaps = 1/93 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K LI +A++ ++ + E +++ +E + +A+++ +V + GFGSF R R AR
Sbjct: 1 MNKGELIDAVAER-AQVPKKQAEAVISATIETIMEAVSSEDKVTLVGFGSFEARDRKARE 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSP 93
R P + + + VP F AGK K ++ S
Sbjct: 60 GRNPKTNEKMVIPATKVPAFSAGKQFKTKVASK 92
>gi|87200378|ref|YP_497635.1| integration host factor, alpha subunit [Novosphingobium
aromaticivorans DSM 12444]
gi|87136059|gb|ABD26801.1| integration host factor, alpha subunit [Novosphingobium
aromaticivorans DSM 12444]
Length = 98
Score = 86.7 bits (214), Expect = 1e-15, Method: Composition-based stats.
Identities = 29/89 (32%), Positives = 50/89 (56%), Gaps = 1/89 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
++ L +I + L+ D ++V +L+ M ALA+G V+I GFG+F +R +A R+
Sbjct: 8 TRADLAESI-NRRVGLSRADSLEMVESILQHMCDALADGQNVKISGFGTFLLRDKAERIG 66
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P + + + V FRA + LK+R+
Sbjct: 67 RNPKTGIEVPITPRRVLSFRASQMLKDRI 95
>gi|67920710|ref|ZP_00514229.1| Histone-like bacterial DNA-binding protein [Crocosphaera watsonii
WH 8501]
gi|67856827|gb|EAM52067.1| Histone-like bacterial DNA-binding protein [Crocosphaera watsonii
WH 8501]
Length = 93
Score = 86.7 bits (214), Expect = 1e-15, Method: Composition-based stats.
Identities = 30/90 (33%), Positives = 50/90 (55%), Gaps = 1/90 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI +A K ++ + E +++ ++ + +A+A+ +V + GFGSF R R AR
Sbjct: 1 MNKSELIDAVANK-AEVTKKQAEMVISATIDTIMEAVASDDKVTLVGFGSFESRDRKARE 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P + +++ VP F AGK KE +
Sbjct: 60 GRNPKTNEKMNIPATKVPAFSAGKKFKEAV 89
>gi|256838928|ref|ZP_05544438.1| integration host factor, alpha subunit [Parabacteroides sp. D13]
gi|256739847|gb|EEU53171.1| integration host factor, alpha subunit [Parabacteroides sp. D13]
Length = 95
Score = 86.7 bits (214), Expect = 1e-15, Method: Composition-based stats.
Identities = 27/96 (28%), Positives = 45/96 (46%), Gaps = 1/96 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M + L+ T+A K + + + V E T+AL + G + + GFG+ S K+ R+
Sbjct: 1 MNRRELVKTLADKLS-VTQVEAMRFVQAWEETTTEALESDGSLMLLGFGTLSAWKQTERI 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDST 96
R P + + F+ GK L +RLN+ S
Sbjct: 60 GRNPRNGVAYIIRARKSVKFKPGKLLLKRLNASSSK 95
>gi|258544425|ref|ZP_05704659.1| DNA-binding protein HU-beta [Cardiobacterium hominis ATCC 15826]
gi|258520314|gb|EEV89173.1| DNA-binding protein HU-beta [Cardiobacterium hominis ATCC 15826]
Length = 103
Score = 86.7 bits (214), Expect = 1e-15, Method: Composition-based stats.
Identities = 32/91 (35%), Positives = 47/91 (51%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ L+ + K + +LE +T+ L G +V + GFG+F R+RAAR
Sbjct: 1 MNKTELVDA-IAAAADITKVQAGKALEAVLESVTETLKKGDKVTLIGFGTFETRERAART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P K I + + P F+AGK LK+ LN
Sbjct: 60 GRNPQTGKEIQIAASITPAFKAGKKLKDALN 90
>gi|157375731|ref|YP_001474331.1| integration host factor, alpha subunit [Shewanella sediminis
HAW-EB3]
gi|157962289|ref|YP_001502323.1| integration host factor subunit alpha [Shewanella pealeana ATCC
700345]
gi|167623744|ref|YP_001674038.1| integration host factor subunit alpha [Shewanella halifaxensis
HAW-EB4]
gi|212635793|ref|YP_002312318.1| integration host factor subunit alpha [Shewanella piezotolerans
WP3]
gi|189045030|sp|B0TQY4|IHFA_SHEHH RecName: Full=Integration host factor subunit alpha;
Short=IHF-alpha
gi|189045031|sp|A8H5F1|IHFA_SHEPA RecName: Full=Integration host factor subunit alpha;
Short=IHF-alpha
gi|189045032|sp|A8FWI0|IHFA_SHESH RecName: Full=Integration host factor subunit alpha;
Short=IHF-alpha
gi|226709753|sp|B8CR59|IHFA_SHEPW RecName: Full=Integration host factor subunit alpha;
Short=IHF-alpha
gi|157318105|gb|ABV37203.1| integration host factor, alpha subunit [Shewanella sediminis
HAW-EB3]
gi|157847289|gb|ABV87788.1| integration host factor, alpha subunit [Shewanella pealeana ATCC
700345]
gi|167353766|gb|ABZ76379.1| integration host factor, alpha subunit [Shewanella halifaxensis
HAW-EB4]
gi|212557277|gb|ACJ29731.1| Integration host factor, alpha subunit [Shewanella piezotolerans
WP3]
Length = 98
Score = 86.7 bits (214), Expect = 1e-15, Method: Composition-based stats.
Identities = 26/95 (27%), Positives = 50/95 (52%), Gaps = 1/95 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ + + + +N + +++V EE+ QAL +G +V++ GFG+F +R + R
Sbjct: 4 TKAEMAEHLFE-TLGINKRVAKEMVETFFEEIRQALESGEQVKLSGFGNFDLRDKNQRPG 62
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDST 96
R P + I + + V FR G+ LK R+ ++
Sbjct: 63 RNPKTGEDIPISARRVVTFRPGQKLKSRVEEANAK 97
>gi|163851479|ref|YP_001639522.1| histone family protein DNA-binding protein [Methylobacterium
extorquens PA1]
gi|218530287|ref|YP_002421103.1| histone family protein DNA-binding protein [Methylobacterium
chloromethanicum CM4]
gi|240138644|ref|YP_002963116.1| integration host factor (IHF), DNA-binding protein, alpha subunit
[Methylobacterium extorquens AM1]
gi|254561242|ref|YP_003068337.1| integration host factor [Methylobacterium extorquens DM4]
gi|226709732|sp|A9W4E5|IHFA_METEP RecName: Full=Integration host factor subunit alpha;
Short=IHF-alpha
gi|254803518|sp|B7KYG6|IHFA_METC4 RecName: Full=Integration host factor subunit alpha;
Short=IHF-alpha
gi|163663084|gb|ABY30451.1| histone family protein DNA-binding protein [Methylobacterium
extorquens PA1]
gi|218522590|gb|ACK83175.1| histone family protein DNA-binding protein [Methylobacterium
chloromethanicum CM4]
gi|240008613|gb|ACS39839.1| integration host factor (IHF), DNA-binding protein, alpha subunit
[Methylobacterium extorquens AM1]
gi|254268520|emb|CAX24477.1| integration host factor (IHF), DNA-binding protein, alpha subunit
[Methylobacterium extorquens DM4]
Length = 108
Score = 86.7 bits (214), Expect = 1e-15, Method: Composition-based stats.
Identities = 24/90 (26%), Positives = 45/90 (50%), Gaps = 1/90 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
++ L + ++ L+ + +V +L E+ L++G V++ FGSF VR + R+
Sbjct: 7 TRADLSEAVYQQ-VGLSRAESAALVETVLAEICTCLSSGETVKLSSFGSFVVRSKGKRIG 65
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + +E + V F+ LK R+N
Sbjct: 66 RNPKTGVEVEIEPRQVMVFKPSNVLKARIN 95
>gi|119476516|ref|ZP_01616867.1| integration host factor alpha subunit [marine gamma
proteobacterium HTCC2143]
gi|119450380|gb|EAW31615.1| integration host factor alpha subunit [marine gamma
proteobacterium HTCC2143]
Length = 102
Score = 86.7 bits (214), Expect = 1e-15, Method: Composition-based stats.
Identities = 25/89 (28%), Positives = 49/89 (55%), Gaps = 1/89 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
KS + + ++ LN ++ +++V EE+ +L + +V++ GFG+F +R ++ R
Sbjct: 5 TKSVMAEKLYEEL-GLNKREAKEVVEHFFEEIRYSLEDNEQVKLSGFGNFDLRDKSQRPG 63
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P + I + + V FR G+ LK R+
Sbjct: 64 RNPKTGEEIPISARRVVTFRPGQKLKVRV 92
>gi|257439404|ref|ZP_05615159.1| DNA-binding protein HU [Faecalibacterium prausnitzii A2-165]
gi|257198279|gb|EEU96563.1| DNA-binding protein HU [Faecalibacterium prausnitzii A2-165]
Length = 89
Score = 86.7 bits (214), Expect = 1e-15, Method: Composition-based stats.
Identities = 28/90 (31%), Positives = 50/90 (55%), Gaps = 1/90 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI +A +++ + E VN + +++A+A G ++ I GFG+F +R+RA R
Sbjct: 1 MTKTDLIAQVAANT-EMSKKSAELAVNAAFDALSKAMAEGEKITISGFGTFEIRERAERQ 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
P ++ I++ F+ GK LK+ L
Sbjct: 60 GINPRTREPITIAASKSIVFKPGKALKDTL 89
>gi|213963610|ref|ZP_03391862.1| DNA-binding protein HU-beta [Capnocytophaga sputigena Capno]
gi|213953738|gb|EEB65068.1| DNA-binding protein HU-beta [Capnocytophaga sputigena Capno]
Length = 92
Score = 86.7 bits (214), Expect = 1e-15, Method: Composition-based stats.
Identities = 37/93 (39%), Positives = 48/93 (51%), Gaps = 1/93 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI IA + L D +K V + ++L G +V I GFGS+SV K+ AR
Sbjct: 1 MNKTELIDAIAAE-AGLTKADAKKAVEAFFSNVEKSLKQGKKVAIVGFGSWSVTKKEARD 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSP 93
AR P VI V K V F+AG L E +N
Sbjct: 60 ARNPRTGAVIKVPAKKVVKFKAGTELSESVNKK 92
>gi|254454267|ref|ZP_05067704.1| integration host factor, alpha subunit [Octadecabacter
antarcticus 238]
gi|198268673|gb|EDY92943.1| integration host factor, alpha subunit [Octadecabacter
antarcticus 238]
Length = 100
Score = 86.7 bits (214), Expect = 1e-15, Method: Composition-based stats.
Identities = 26/89 (29%), Positives = 48/89 (53%), Gaps = 1/89 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
+ L + ++ L+ + +V +L +M+ ALA G V+I FG+FS+R +AAR+
Sbjct: 7 TRMDLADAVHEE-VGLSRNESADLVESVLTQMSDALAGGDSVKISSFGTFSIRDKAARIG 65
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P + + + + V FR +K+R+
Sbjct: 66 RNPKTGEEVPITPRRVLSFRPSHLMKDRV 94
>gi|308271747|emb|CBX28355.1| Integration host factor subunit beta [uncultured Desulfobacterium
sp.]
Length = 92
Score = 86.7 bits (214), Expect = 1e-15, Method: Composition-based stats.
Identities = 34/93 (36%), Positives = 53/93 (56%), Gaps = 1/93 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K LI I K ++ + ++V + + MT A+ANG R+EIRG SF V+ +
Sbjct: 1 MNKLELISAIKDK-ANISKAEAARVVQIFFDSMTDAMANGDRIEIRGLCSFYVKNYKSYA 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSP 93
R P K + ++ K +PFF++GK LKER++
Sbjct: 60 GRNPKTGKKVVIKPKKLPFFKSGKELKERVDVK 92
>gi|226941667|ref|YP_002796741.1| integration host factor subunit alpha [Laribacter hongkongensis
HLHK9]
gi|226716594|gb|ACO75732.1| IhfA [Laribacter hongkongensis HLHK9]
Length = 101
Score = 86.7 bits (214), Expect = 1e-15, Method: Composition-based stats.
Identities = 25/89 (28%), Positives = 43/89 (48%), Gaps = 1/89 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ L + K L+ ++ + +V EE+ AL G V++ GFG+F +R + R
Sbjct: 4 TKAELADLLFDK-VGLSKRESKDMVESFFEEIRVALEEGDSVKLSGFGNFQLRDKPQRPG 62
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P + I + + V F A + LK +
Sbjct: 63 RNPKTGEEIPITARRVVTFHASQKLKGMV 91
>gi|114562885|ref|YP_750398.1| integration host factor, alpha subunit [Shewanella frigidimarina
NCIMB 400]
gi|122299977|sp|Q083K5|IHFA_SHEFN RecName: Full=Integration host factor subunit alpha;
Short=IHF-alpha
gi|114334178|gb|ABI71560.1| integration host factor, alpha subunit [Shewanella frigidimarina
NCIMB 400]
Length = 99
Score = 86.7 bits (214), Expect = 1e-15, Method: Composition-based stats.
Identities = 26/94 (27%), Positives = 51/94 (54%), Gaps = 1/94 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ + + + +N + +++V EE+ +AL +G +V++ GFG+F +R + R
Sbjct: 4 TKAEMAEHLFE-TLGINKRVAKEMVESFFEEIREALESGEQVKLSGFGNFDLRDKNQRPG 62
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDS 95
R P + I + + V FR G+ LK R+ + +S
Sbjct: 63 RNPKTGEDIPISARRVVTFRPGQKLKSRVEAANS 96
>gi|227495757|ref|ZP_03926068.1| DNA-binding protein HU [Actinomyces urogenitalis DSM 15434]
gi|226834686|gb|EEH67069.1| DNA-binding protein HU [Actinomyces urogenitalis DSM 15434]
Length = 93
Score = 86.7 bits (214), Expect = 1e-15, Method: Composition-based stats.
Identities = 23/89 (25%), Positives = 37/89 (41%), Gaps = 1/89 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
++ LI IA+K L D + + E + + +A G V+I G +RAAR
Sbjct: 4 NRTELIAAIAEK-AGLTKTDADAFLGAFQEVLVENVAKGEAVKITGLMGVERVERAARTG 62
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P + I + G LK+ +
Sbjct: 63 RNPRTGEEIQIPAGYGVKLTVGSALKKAV 91
>gi|149202720|ref|ZP_01879692.1| integration host factor, alpha subunit [Roseovarius sp. TM1035]
gi|149144002|gb|EDM32036.1| integration host factor, alpha subunit [Roseovarius sp. TM1035]
Length = 100
Score = 86.4 bits (213), Expect = 1e-15, Method: Composition-based stats.
Identities = 27/89 (30%), Positives = 47/89 (52%), Gaps = 1/89 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
+ L I ++ L+ D ++V +L M+ AL G +V+I FG+FSVR + AR+
Sbjct: 7 TRMDLSEAIFRE-VGLSRNDAAQLVESVLGHMSDALVRGEQVKISSFGTFSVRDKTARVG 65
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P + + + + V FR +K+R+
Sbjct: 66 RNPKTGEEVPINPRRVLTFRPSHLMKDRV 94
>gi|194334586|ref|YP_002016446.1| histone family protein DNA-binding protein [Prosthecochloris
aestuarii DSM 271]
gi|194312404|gb|ACF46799.1| histone family protein DNA-binding protein [Prosthecochloris
aestuarii DSM 271]
Length = 103
Score = 86.4 bits (213), Expect = 1e-15, Method: Composition-based stats.
Identities = 35/89 (39%), Positives = 51/89 (57%), Gaps = 1/89 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ L+ TI+ L + E +V+ L E + +L G R+EIRGFGSF++R + RLA
Sbjct: 6 TKADLVNTIS-HTTGLTKHETEAVVDCLFESIIDSLKAGKRIEIRGFGSFNIRYKNERLA 64
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P + +SVE K VP F+ K K +
Sbjct: 65 RNPRTGEKVSVEAKNVPTFKISKEFKHAV 93
>gi|283783178|ref|YP_003373932.1| DNA-binding protein HU [Gardnerella vaginalis 409-05]
gi|283441069|gb|ADB13535.1| DNA-binding protein HU [Gardnerella vaginalis 409-05]
Length = 93
Score = 86.4 bits (213), Expect = 1e-15, Method: Composition-based stats.
Identities = 26/89 (29%), Positives = 39/89 (43%), Gaps = 1/89 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
KS L+ IA+K+ L E VN + +AL +G +++ G S KRA R
Sbjct: 4 NKSDLVSKIAQKS-NLTKAQAEAAVNAFQDVFVEALQSGEGLKLTGLFSAERVKRAERTG 62
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P + I + AG LK+ +
Sbjct: 63 RNPRTGETIKIPASYGVRISAGSLLKKAV 91
>gi|315638696|ref|ZP_07893870.1| DNA-binding protein HU [Campylobacter upsaliensis JV21]
gi|58979347|gb|AAW83338.1| DNA-binding protein HU [Campylobacter upsaliensis]
gi|58979399|gb|AAW83364.1| DNA-binding protein HU [Campylobacter upsaliensis]
gi|58979401|gb|AAW83365.1| DNA-binding protein HU [Campylobacter upsaliensis]
gi|58979403|gb|AAW83366.1| DNA-binding protein HU [Campylobacter upsaliensis]
gi|58979495|gb|AAW83412.1| DNA-binding protein HU [Campylobacter upsaliensis]
gi|58979497|gb|AAW83413.1| DNA-binding protein HU [Campylobacter upsaliensis]
gi|58979499|gb|AAW83414.1| DNA-binding protein HU [Campylobacter upsaliensis]
gi|58979501|gb|AAW83415.1| DNA-binding protein HU [Campylobacter upsaliensis]
gi|58979503|gb|AAW83416.1| DNA-binding protein HU [Campylobacter upsaliensis]
gi|58979505|gb|AAW83417.1| DNA-binding protein HU [Campylobacter upsaliensis]
gi|58979507|gb|AAW83418.1| DNA-binding protein HU [Campylobacter upsaliensis]
gi|58979509|gb|AAW83419.1| DNA-binding protein HU [Campylobacter upsaliensis]
gi|58979511|gb|AAW83420.1| DNA-binding protein HU [Campylobacter upsaliensis]
gi|58979513|gb|AAW83421.1| DNA-binding protein HU [Campylobacter upsaliensis]
gi|58979515|gb|AAW83422.1| DNA-binding protein HU [Campylobacter upsaliensis]
gi|58979517|gb|AAW83423.1| DNA-binding protein HU [Campylobacter upsaliensis]
gi|58979519|gb|AAW83424.1| DNA-binding protein HU [Campylobacter upsaliensis]
gi|58979521|gb|AAW83425.1| DNA-binding protein HU [Campylobacter upsaliensis]
gi|58979523|gb|AAW83426.1| DNA-binding protein HU [Campylobacter upsaliensis]
gi|58979525|gb|AAW83427.1| DNA-binding protein HU [Campylobacter upsaliensis]
gi|58979527|gb|AAW83428.1| DNA-binding protein HU [Campylobacter upsaliensis]
gi|58979529|gb|AAW83429.1| DNA-binding protein HU [Campylobacter upsaliensis]
gi|58979553|gb|AAW83441.1| DNA-binding protein HU [Campylobacter upsaliensis]
gi|58979577|gb|AAW83453.1| DNA-binding protein HU [Campylobacter upsaliensis]
gi|58979579|gb|AAW83454.1| DNA-binding protein HU [Campylobacter upsaliensis]
gi|58979583|gb|AAW83456.1| DNA-binding protein HU [Campylobacter upsaliensis]
gi|58979585|gb|AAW83457.1| DNA-binding protein HU [Campylobacter upsaliensis]
gi|58979587|gb|AAW83458.1| DNA-binding protein HU [Campylobacter upsaliensis]
gi|58979597|gb|AAW83463.1| DNA-binding protein HU [Campylobacter upsaliensis]
gi|58979603|gb|AAW83466.1| DNA-binding protein HU [Campylobacter upsaliensis]
gi|58979605|gb|AAW83467.1| DNA-binding protein HU [Campylobacter upsaliensis]
gi|315481320|gb|EFU71950.1| DNA-binding protein HU [Campylobacter upsaliensis JV21]
Length = 98
Score = 86.4 bits (213), Expect = 1e-15, Method: Composition-based stats.
Identities = 31/86 (36%), Positives = 45/86 (52%), Gaps = 1/86 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ I +A +N L +D + ++ +T+ LA G + GFG+FS +RAAR
Sbjct: 1 MTKADFISQVA-QNAGLTKKDAGAATDAVISTITEVLAKGDSISFIGFGTFSTTERAARE 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNL 86
AR P K I V V F+ GK+L
Sbjct: 60 ARVPSTGKTIKVPATRVAKFKVGKSL 85
>gi|58979423|gb|AAW83376.1| DNA-binding protein HU [Campylobacter lari]
gi|58979425|gb|AAW83377.1| DNA-binding protein HU [Campylobacter lari]
gi|58979427|gb|AAW83378.1| DNA-binding protein HU [Campylobacter lari]
gi|58979431|gb|AAW83380.1| DNA-binding protein HU [Campylobacter lari]
gi|58979433|gb|AAW83381.1| DNA-binding protein HU [Campylobacter lari]
gi|58979469|gb|AAW83399.1| DNA-binding protein HU [Campylobacter lari]
gi|58979471|gb|AAW83400.1| DNA-binding protein HU [Campylobacter lari]
Length = 100
Score = 86.4 bits (213), Expect = 1e-15, Method: Composition-based stats.
Identities = 31/86 (36%), Positives = 43/86 (50%), Gaps = 1/86 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ I +A + L +D + ++ +T LA G + GFG+FSV +RAAR
Sbjct: 1 MTKADFISQVA-QTAGLTKKDATAATDAVIATITDVLAKGDSISFIGFGTFSVAERAARE 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNL 86
AR P I V V F+ GKNL
Sbjct: 60 ARVPSTGATIKVPATKVAKFKVGKNL 85
>gi|333029611|ref|ZP_08457672.1| histone family protein DNA-binding protein [Bacteroides coprosuis
DSM 18011]
gi|332740208|gb|EGJ70690.1| histone family protein DNA-binding protein [Bacteroides coprosuis
DSM 18011]
Length = 90
Score = 86.4 bits (213), Expect = 1e-15, Method: Composition-based stats.
Identities = 32/91 (35%), Positives = 52/91 (57%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI +A+K+ L+ D +K ++ + ++ L +G +V + GFG+FSV +R AR
Sbjct: 1 MNKAELISAMAEKS-GLSKVDSKKALDAFMSVVSDTLKSGDKVSLIGFGTFSVSERKART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
P QK I + K V F+AG +L E +
Sbjct: 60 GINPATQKPIEIPAKKVAKFKAGLDLAEAVK 90
>gi|58979335|gb|AAW83332.1| DNA-binding protein HU [Campylobacter coli]
Length = 96
Score = 86.4 bits (213), Expect = 1e-15, Method: Composition-based stats.
Identities = 31/86 (36%), Positives = 42/86 (48%), Gaps = 1/86 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ I +A + L +D + ++ +T L G V GFG+FS +RAAR
Sbjct: 1 MTKADFISQVA-QTAGLTKKDATAATDAVISTITDVLTKGDSVSFIGFGTFSTAERAARE 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNL 86
AR P K I V V F+ GKNL
Sbjct: 60 ARVPSTGKTIKVPATRVAKFKVGKNL 85
>gi|254420538|ref|ZP_05034262.1| DNA-binding protein HU [Brevundimonas sp. BAL3]
gi|196186715|gb|EDX81691.1| DNA-binding protein HU [Brevundimonas sp. BAL3]
Length = 92
Score = 86.4 bits (213), Expect = 1e-15, Method: Composition-based stats.
Identities = 26/90 (28%), Positives = 41/90 (45%), Gaps = 1/90 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
++ LI +A K+ ++ D K++ ++E + +L GG V I G F RA R
Sbjct: 3 TQAELIAAVA-KDAGVSQADAGKVLTAIVENIHASLKAGGDVRISNLGVFDTAARAEREG 61
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P I + FR K LK+ +N
Sbjct: 62 RNPATGATIKIAASKAVRFRVSKPLKDAVN 91
>gi|117924222|ref|YP_864839.1| HU family DNA-binding protein [Magnetococcus sp. MC-1]
gi|117607978|gb|ABK43433.1| HU family DNA-binding protein [Magnetococcus sp. MC-1]
Length = 91
Score = 86.4 bits (213), Expect = 1e-15, Method: Composition-based stats.
Identities = 29/91 (31%), Positives = 49/91 (53%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M L +A K ++ D + V LE ++++L V + GFG+FSV +RAAR
Sbjct: 1 MNLGELKKIVADKT-GMSQADAGRAVAATLEAISESLGQSATVSLLGFGTFSVGERAARE 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + I++ F+AG++L+E++N
Sbjct: 60 GRNPQTGEKINISASRTIRFKAGQSLREKVN 90
>gi|158339614|ref|YP_001521003.1| DNA-binding protein HU [Acaryochloris marina MBIC11017]
gi|158309855|gb|ABW31471.1| DNA-binding protein HU [Acaryochloris marina MBIC11017]
Length = 91
Score = 86.4 bits (213), Expect = 1e-15, Method: Composition-based stats.
Identities = 29/91 (31%), Positives = 46/91 (50%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K L+ IA+ + + I+ L E + + +++G +V + GFGSF R R AR
Sbjct: 1 MNKGELVDVIAENT-GATKKQADTILTALTETIMETVSSGEKVILVGFGSFEARDRKARD 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P K +++ P F AGK KE++
Sbjct: 60 GRNPRTGKKLTIPATKSPIFSAGKTFKEQVK 90
>gi|308235225|ref|ZP_07665962.1| DNA-binding protein HB1 [Gardnerella vaginalis ATCC 14018]
Length = 93
Score = 86.4 bits (213), Expect = 1e-15, Method: Composition-based stats.
Identities = 26/89 (29%), Positives = 39/89 (43%), Gaps = 1/89 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
KS L+ IA+K+ L E VN + +AL +G +++ G S KRA R
Sbjct: 4 NKSDLVSKIAQKS-NLTKAQAEAAVNAFQDVFVEALQSGEGLKLTGLFSAERVKRAERTG 62
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P + I + AG LK+ +
Sbjct: 63 RNPRTGETIKIPASYGVRISAGSLLKKAV 91
>gi|189423310|ref|YP_001950487.1| histone family protein DNA-binding protein [Geobacter lovleyi SZ]
gi|189419569|gb|ACD93967.1| histone family protein DNA-binding protein [Geobacter lovleyi SZ]
Length = 91
Score = 86.4 bits (213), Expect = 1e-15, Method: Composition-based stats.
Identities = 22/92 (23%), Positives = 45/92 (48%), Gaps = 1/92 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ ++ I + ++ ++V + M L G ++I GFGSF V+++ R
Sbjct: 1 MTKADIVEKIHTNT-GMTQKESAEMVEAVFSIMKSTLETGETLKISGFGSFVVKQKNDRR 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P + I++E + + F+ L++ +N
Sbjct: 60 GRNPQTGEAITIEARRILTFKPSTVLRDAINK 91
>gi|78222629|ref|YP_384376.1| histone-like DNA-binding protein [Geobacter metallireducens
GS-15]
gi|78193884|gb|ABB31651.1| Histone-like DNA-binding protein [Geobacter metallireducens
GS-15]
Length = 91
Score = 86.4 bits (213), Expect = 1e-15, Method: Composition-based stats.
Identities = 24/92 (26%), Positives = 49/92 (53%), Gaps = 1/92 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ ++ I +K + ++ ++V + + + L NG +++I GFG+F V+++A R
Sbjct: 1 MTKADIVEQIYEK-VGFSKKESAELVERVFGLIKETLENGEKIKIAGFGNFVVKEKADRR 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P I + + + F+ + LK +NS
Sbjct: 60 GRNPQTGDEIIISARRILTFKPSQVLKSSINS 91
>gi|145638882|ref|ZP_01794490.1| integration host factor alpha-subunit [Haemophilus influenzae
PittII]
gi|145271854|gb|EDK11763.1| integration host factor alpha-subunit [Haemophilus influenzae
PittII]
gi|301170051|emb|CBW29655.1| integration host factor (IHF), DNA-binding protein, alpha subunit
[Haemophilus influenzae 10810]
gi|309750859|gb|ADO80843.1| Integration host factor, alpha subunit [Haemophilus influenzae
R2866]
Length = 96
Score = 86.4 bits (213), Expect = 1e-15, Method: Composition-based stats.
Identities = 28/94 (29%), Positives = 51/94 (54%), Gaps = 1/94 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
+ K +I ++ K L+ QD + +V LEE+ +L +G V++ GFG+F +R +++R
Sbjct: 4 ITKLDIIEYLSDKY-HLSKQDTKNVVENFLEEIRSSLESGQDVKLSGFGNFELRDKSSRP 62
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSPD 94
R P V+ V + V F+ G+ L+ R+
Sbjct: 63 GRNPKTGDVVPVSARRVVTFKPGQKLRARVEKTK 96
>gi|302847610|ref|XP_002955339.1| hypothetical protein VOLCADRAFT_83165 [Volvox carteri f.
nagariensis]
gi|300259411|gb|EFJ43639.1| hypothetical protein VOLCADRAFT_83165 [Volvox carteri f.
nagariensis]
Length = 186
Score = 86.4 bits (213), Expect = 1e-15, Method: Composition-based stats.
Identities = 27/91 (29%), Positives = 46/91 (50%), Gaps = 1/91 (1%)
Query: 3 KSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLAR 62
K+ L+ IAK+ ++ K + L + +A+ +G RV + GFG+F R R + R
Sbjct: 44 KAVLVDQIAKE-AEITKAQATKAFDSLFNAVQEAVTSGKRVTVLGFGTFESRLRKEKNGR 102
Query: 63 APLAQKVISVEEKMVPFFRAGKNLKERLNSP 93
P + I++ P FRA + KE++N
Sbjct: 103 NPRTGETITIPAATAPAFRASVSFKEKVNGK 133
>gi|295105343|emb|CBL02887.1| Bacterial nucleoid DNA-binding protein [Faecalibacterium
prausnitzii SL3/3]
Length = 89
Score = 86.4 bits (213), Expect = 1e-15, Method: Composition-based stats.
Identities = 28/90 (31%), Positives = 51/90 (56%), Gaps = 1/90 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI +A +++ + E+ V+ + E + +A+ G ++ I GFG+F VR+RA R
Sbjct: 1 MTKTDLIAQVAANT-EMSKKSAEQAVSAVFEALGKAMTEGEKITISGFGTFEVRERAERQ 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
P ++ I++ F+ GK+LK+ L
Sbjct: 60 GINPRTREPITIAASRSIVFKPGKSLKDTL 89
>gi|290475541|ref|YP_003468429.1| integration host factor (IHF) subunit alpha, DNA-bending protein,
DNA replication [Xenorhabdus bovienii SS-2004]
gi|289174862|emb|CBJ81663.1| integration host factor (IHF), alpha subunit, DNA-bending
protein, DNA replication [Xenorhabdus bovienii SS-2004]
Length = 98
Score = 86.4 bits (213), Expect = 1e-15, Method: Composition-based stats.
Identities = 26/89 (29%), Positives = 49/89 (55%), Gaps = 1/89 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ + + +K ++ +D + +V + EE+ +L NG +V++ GFG+F +R + R
Sbjct: 4 TKAEMSENLFEKL-GISKRDAKDLVEIFFEEVRHSLENGEQVKLSGFGNFDLRDKNQRPG 62
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P + I + + V FR G+ LK R+
Sbjct: 63 RNPKTGEDIPITARRVVTFRPGQKLKNRV 91
>gi|120598987|ref|YP_963561.1| integration host factor subunit alpha [Shewanella sp. W3-18-1]
gi|126174101|ref|YP_001050250.1| integration host factor subunit alpha [Shewanella baltica OS155]
gi|146292928|ref|YP_001183352.1| integration host factor subunit alpha [Shewanella putrefaciens
CN-32]
gi|153000427|ref|YP_001366108.1| integration host factor subunit alpha [Shewanella baltica OS185]
gi|160875024|ref|YP_001554340.1| integration host factor subunit alpha [Shewanella baltica OS195]
gi|217973584|ref|YP_002358335.1| integration host factor subunit alpha [Shewanella baltica OS223]
gi|304411359|ref|ZP_07392973.1| integration host factor, alpha subunit [Shewanella baltica OS183]
gi|307305319|ref|ZP_07585067.1| integration host factor, alpha subunit [Shewanella baltica BA175]
gi|166918524|sp|A3D3R8|IHFA_SHEB5 RecName: Full=Integration host factor subunit alpha;
Short=IHF-alpha
gi|166918525|sp|A6WMK6|IHFA_SHEB8 RecName: Full=Integration host factor subunit alpha;
Short=IHF-alpha
gi|166918527|sp|A4Y6H0|IHFA_SHEPC RecName: Full=Integration host factor subunit alpha;
Short=IHF-alpha
gi|166918529|sp|A1RK12|IHFA_SHESW RecName: Full=Integration host factor subunit alpha;
Short=IHF-alpha
gi|189045029|sp|A9KYZ2|IHFA_SHEB9 RecName: Full=Integration host factor subunit alpha;
Short=IHF-alpha
gi|254803521|sp|B8E7F3|IHFA_SHEB2 RecName: Full=Integration host factor subunit alpha;
Short=IHF-alpha
gi|120559080|gb|ABM25007.1| integration host factor, alpha subunit [Shewanella sp. W3-18-1]
gi|125997306|gb|ABN61381.1| integration host factor, alpha subunit [Shewanella baltica OS155]
gi|145564618|gb|ABP75553.1| integration host factor, alpha subunit [Shewanella putrefaciens
CN-32]
gi|151365045|gb|ABS08045.1| integration host factor, alpha subunit [Shewanella baltica OS185]
gi|160860546|gb|ABX49080.1| integration host factor, alpha subunit [Shewanella baltica OS195]
gi|217498719|gb|ACK46912.1| integration host factor, alpha subunit [Shewanella baltica OS223]
gi|304350214|gb|EFM14618.1| integration host factor, alpha subunit [Shewanella baltica OS183]
gi|306911622|gb|EFN42047.1| integration host factor, alpha subunit [Shewanella baltica BA175]
gi|315267256|gb|ADT94109.1| integration host factor, alpha subunit [Shewanella baltica OS678]
gi|319426543|gb|ADV54617.1| integration host factor, alpha subunit [Shewanella putrefaciens
200]
Length = 98
Score = 86.4 bits (213), Expect = 1e-15, Method: Composition-based stats.
Identities = 25/89 (28%), Positives = 47/89 (52%), Gaps = 1/89 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ + + + +N + +++V EE+ AL +G +V++ GFG+F +R + R
Sbjct: 4 TKAEMAEHLFE-TLGMNKRVAKEMVESFFEEIRGALESGEQVKLSGFGNFDLRDKNQRPG 62
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P + I + + V FR G+ LK R+
Sbjct: 63 RNPKTGEDIPISARRVVTFRPGQKLKTRV 91
>gi|283954472|ref|ZP_06371992.1| DNA-binding protein HU [Campylobacter jejuni subsp. jejuni 414]
gi|283794089|gb|EFC32838.1| DNA-binding protein HU [Campylobacter jejuni subsp. jejuni 414]
Length = 98
Score = 86.4 bits (213), Expect = 1e-15, Method: Composition-based stats.
Identities = 33/90 (36%), Positives = 47/90 (52%), Gaps = 1/90 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ I +A + L +D + ++ +T LA G + GFG+FS ++RAAR
Sbjct: 1 MTKADFISLVA-QTAGLTKKDATTATDAVISTITDVLAKGDSISFIGFGTFSTQERAARE 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
AR P K I V V F+ GKNLKE +
Sbjct: 60 ARVPSTGKTIKVPATRVVKFKVGKNLKEAV 89
>gi|325982719|ref|YP_004295121.1| integration host factor, alpha subunit [Nitrosomonas sp. AL212]
gi|325532238|gb|ADZ26959.1| integration host factor, alpha subunit [Nitrosomonas sp. AL212]
Length = 98
Score = 86.4 bits (213), Expect = 1e-15, Method: Composition-based stats.
Identities = 27/92 (29%), Positives = 45/92 (48%), Gaps = 1/92 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ L + + N LN ++ + +V EE+ AL NG V++ GFG+F +R + R
Sbjct: 4 TKAELADLLFE-NVGLNKREAKDMVESFYEEVRTALQNGEGVKLSGFGNFQLRSKPQRPG 62
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLNSP 93
R P + I + + V F A + LK +
Sbjct: 63 RNPKTGEEIPITARRVVTFHASQKLKALVEKN 94
>gi|21221395|ref|NP_627174.1| DNA-binding protein HU (hs1) [Streptomyces coelicolor A3(2)]
gi|239981939|ref|ZP_04704463.1| DNA-binding protein HU (hs1) [Streptomyces albus J1074]
gi|256787421|ref|ZP_05525852.1| DNA-binding protein HU (hs1) [Streptomyces lividans TK24]
gi|289771320|ref|ZP_06530698.1| HSl protein [Streptomyces lividans TK24]
gi|291453793|ref|ZP_06593183.1| DNA-binding protein Hu [Streptomyces albus J1074]
gi|61222642|sp|P0A3H5|DBH1_STRCO RecName: Full=DNA-binding protein HU 1; AltName: Full=HSl
gi|61222644|sp|P0A3H6|DBH1_STRLI RecName: Full=DNA-binding protein HU 1; AltName: Full=HSl
gi|2104560|dbj|BAA19970.1| HSl protein [Streptomyces lividans TK24]
gi|6063408|dbj|BAA85334.1| histone-like protein HSl [Streptomyces lividans]
gi|6911980|emb|CAB72196.1| DNA-binding protein Hu (hs1) [Streptomyces coelicolor A3(2)]
gi|289701519|gb|EFD68948.1| HSl protein [Streptomyces lividans TK24]
gi|291356742|gb|EFE83644.1| DNA-binding protein Hu [Streptomyces albus J1074]
Length = 93
Score = 86.4 bits (213), Expect = 1e-15, Method: Composition-based stats.
Identities = 25/94 (26%), Positives = 42/94 (44%), Gaps = 2/94 (2%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGG-RVEIRGFGSFSVRKRAAR 59
M +S L+ +A + ++ +D + ++ E + ++ G +V I GF +F RAAR
Sbjct: 1 MNRSELVAALADR-AEVTRKDADAVLAAFAEVVGDIVSKGDEKVTIPGFLTFERTHRAAR 59
Query: 60 LARAPLAQKVISVEEKMVPFFRAGKNLKERLNSP 93
AR P + I + AG LKE
Sbjct: 60 TARNPQTGEPIQIPAGYSVKVSAGSKLKEAAKGK 93
>gi|115524833|ref|YP_781744.1| integration host factor, alpha subunit [Rhodopseudomonas palustris
BisA53]
gi|122295977|sp|Q07MS0|IHFA_RHOP5 RecName: Full=Integration host factor subunit alpha;
Short=IHF-alpha
gi|115518780|gb|ABJ06764.1| integration host factor, alpha subunit [Rhodopseudomonas palustris
BisA53]
Length = 113
Score = 86.4 bits (213), Expect = 1e-15, Method: Composition-based stats.
Identities = 28/100 (28%), Positives = 51/100 (51%), Gaps = 2/100 (2%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
+ L + +K L+ + V ++L+E+T L G V++ FGSF VR++ R+
Sbjct: 9 TRVDLCEAVYQK-VGLSRTESSAFVELVLKEITDCLEKGETVKLSSFGSFMVRQKGQRIG 67
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLN-SPDSTLSNS 100
R P + + + V F+ LK+R+N + ++SNS
Sbjct: 68 RNPKTGTEVPISPRRVMVFKPSAILKQRINGQANGSMSNS 107
>gi|91977158|ref|YP_569817.1| integration host factor subunit alpha [Rhodopseudomonas palustris
BisB5]
gi|123735393|sp|Q136S3|IHFA_RHOPS RecName: Full=Integration host factor subunit alpha;
Short=IHF-alpha
gi|91683614|gb|ABE39916.1| integration host factor, alpha subunit [Rhodopseudomonas
palustris BisB5]
Length = 123
Score = 86.4 bits (213), Expect = 1e-15, Method: Composition-based stats.
Identities = 25/92 (27%), Positives = 46/92 (50%), Gaps = 1/92 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
+ L + +K L+ + V ++L+E+T L G V++ FGSF VR++ R+
Sbjct: 9 TRVDLCEAVYQK-VGLSRTESSAFVELVLKEITDCLEKGETVKLSSFGSFLVRQKGQRIG 67
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLNSP 93
R P + + + V F+ LK+R+N+
Sbjct: 68 RNPKTGTEVPISPRRVMVFKPSAILKQRINAN 99
>gi|296135611|ref|YP_003642853.1| histone family protein DNA-binding protein [Thiomonas intermedia
K12]
gi|294339747|emb|CAZ88109.1| DNA-binding protein HU-beta (NS1) (HU-1) [Thiomonas sp. 3As]
gi|295795733|gb|ADG30523.1| histone family protein DNA-binding protein [Thiomonas intermedia
K12]
Length = 90
Score = 86.4 bits (213), Expect = 1e-15, Method: Composition-based stats.
Identities = 32/91 (35%), Positives = 49/91 (53%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI +A N LN + ++ L++ + + L G V + GFG+F+V KRAAR
Sbjct: 1 MNKAELIEHMAN-NADLNKAQAGRALDALIDAVRRTLKKGDSVSLIGFGTFAVTKRAART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P I ++ +P FR GK LK+ +
Sbjct: 60 GRNPRTGAAIKIKAAKIPKFRPGKGLKDAIK 90
>gi|322419725|ref|YP_004198948.1| histone family protein DNA-binding protein [Geobacter sp. M18]
gi|320126112|gb|ADW13672.1| histone family protein DNA-binding protein [Geobacter sp. M18]
Length = 92
Score = 86.4 bits (213), Expect = 1e-15, Method: Composition-based stats.
Identities = 22/92 (23%), Positives = 51/92 (55%), Gaps = 1/92 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ ++ I +K + ++ ++V + + + L +G +++I GFG+F V++++ R
Sbjct: 1 MTKADIVEKIYEK-VGFSKKESAELVETVFDLIKSTLEDGDKIKIAGFGNFVVKEKSDRR 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P + I++ + + F+ + LK +NS
Sbjct: 60 GRNPQTGEEITIVARKILTFKPSQVLKSAINS 91
>gi|58979473|gb|AAW83401.1| DNA-binding protein HU [Campylobacter upsaliensis]
gi|58979475|gb|AAW83402.1| DNA-binding protein HU [Campylobacter upsaliensis]
gi|58979477|gb|AAW83403.1| DNA-binding protein HU [Campylobacter upsaliensis]
gi|58979479|gb|AAW83404.1| DNA-binding protein HU [Campylobacter upsaliensis]
gi|58979481|gb|AAW83405.1| DNA-binding protein HU [Campylobacter upsaliensis]
gi|58979483|gb|AAW83406.1| DNA-binding protein HU [Campylobacter upsaliensis]
gi|58979487|gb|AAW83408.1| DNA-binding protein HU [Campylobacter upsaliensis]
gi|58979489|gb|AAW83409.1| DNA-binding protein HU [Campylobacter upsaliensis]
gi|58979491|gb|AAW83410.1| DNA-binding protein HU [Campylobacter upsaliensis]
gi|58979493|gb|AAW83411.1| DNA-binding protein HU [Campylobacter upsaliensis]
gi|58979531|gb|AAW83430.1| DNA-binding protein HU [Campylobacter upsaliensis]
gi|58979533|gb|AAW83431.1| DNA-binding protein HU [Campylobacter upsaliensis]
gi|58979535|gb|AAW83432.1| DNA-binding protein HU [Campylobacter upsaliensis]
gi|58979537|gb|AAW83433.1| DNA-binding protein HU [Campylobacter upsaliensis]
gi|58979539|gb|AAW83434.1| DNA-binding protein HU [Campylobacter upsaliensis]
gi|58979541|gb|AAW83435.1| DNA-binding protein HU [Campylobacter upsaliensis]
gi|58979543|gb|AAW83436.1| DNA-binding protein HU [Campylobacter upsaliensis]
gi|58979545|gb|AAW83437.1| DNA-binding protein HU [Campylobacter upsaliensis]
gi|58979547|gb|AAW83438.1| DNA-binding protein HU [Campylobacter upsaliensis]
gi|58979549|gb|AAW83439.1| DNA-binding protein HU [Campylobacter upsaliensis]
gi|58979551|gb|AAW83440.1| DNA-binding protein HU [Campylobacter upsaliensis]
gi|58979555|gb|AAW83442.1| DNA-binding protein HU [Campylobacter upsaliensis]
gi|58979557|gb|AAW83443.1| DNA-binding protein HU [Campylobacter upsaliensis]
gi|58979559|gb|AAW83444.1| DNA-binding protein HU [Campylobacter upsaliensis]
gi|58979561|gb|AAW83445.1| DNA-binding protein HU [Campylobacter upsaliensis]
gi|58979563|gb|AAW83446.1| DNA-binding protein HU [Campylobacter upsaliensis]
gi|58979565|gb|AAW83447.1| DNA-binding protein HU [Campylobacter upsaliensis]
gi|58979567|gb|AAW83448.1| DNA-binding protein HU [Campylobacter upsaliensis]
gi|58979569|gb|AAW83449.1| DNA-binding protein HU [Campylobacter upsaliensis]
gi|58979575|gb|AAW83452.1| DNA-binding protein HU [Campylobacter upsaliensis]
gi|58979581|gb|AAW83455.1| DNA-binding protein HU [Campylobacter upsaliensis]
gi|58979589|gb|AAW83459.1| DNA-binding protein HU [Campylobacter upsaliensis]
gi|58979593|gb|AAW83461.1| DNA-binding protein HU [Campylobacter upsaliensis]
gi|58979601|gb|AAW83465.1| DNA-binding protein HU [Campylobacter upsaliensis]
gi|58979607|gb|AAW83468.1| DNA-binding protein HU [Campylobacter upsaliensis]
gi|58979609|gb|AAW83469.1| DNA-binding protein HU [Campylobacter upsaliensis]
gi|58979611|gb|AAW83470.1| DNA-binding protein HU [Campylobacter upsaliensis]
Length = 98
Score = 86.4 bits (213), Expect = 1e-15, Method: Composition-based stats.
Identities = 32/86 (37%), Positives = 45/86 (52%), Gaps = 1/86 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ I +A +N L +D + ++ +T+ LA G + GFG+FS +RAAR
Sbjct: 1 MTKADFISQVA-QNAGLTKKDAGAATDAVISTITEVLAKGDSISFIGFGTFSTTERAARE 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNL 86
AR P K I V V F+ GKNL
Sbjct: 60 ARVPSTGKTIKVPATRVAKFKVGKNL 85
>gi|302878344|ref|YP_003846908.1| integration host factor, alpha subunit [Gallionella
capsiferriformans ES-2]
gi|302581133|gb|ADL55144.1| integration host factor, alpha subunit [Gallionella
capsiferriformans ES-2]
Length = 103
Score = 86.4 bits (213), Expect = 1e-15, Method: Composition-based stats.
Identities = 25/89 (28%), Positives = 41/89 (46%), Gaps = 1/89 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ L + K LN ++ + +V EE+ L G V++ GFG+F +R + R
Sbjct: 6 TKAELADLLFAK-VGLNKREAKDMVETFFEEIRVQLEQGESVKLSGFGNFQLRDKPQRPG 64
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P K I + + V F + LK +
Sbjct: 65 RNPKTGKEIPISARRVVTFHPSQKLKTLV 93
>gi|297538932|ref|YP_003674701.1| integration host factor subunit alpha [Methylotenera sp. 301]
gi|297258279|gb|ADI30124.1| integration host factor, alpha subunit [Methylotenera sp. 301]
Length = 97
Score = 86.4 bits (213), Expect = 1e-15, Method: Composition-based stats.
Identities = 26/92 (28%), Positives = 48/92 (52%), Gaps = 1/92 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ L + ++ LN ++ + +V EE+ AL G V++ GFG+F +RK++ R
Sbjct: 4 TKAELADLLYEQ-VGLNKREAKDMVEAFFEEVRIALEAGDSVKLSGFGNFELRKKSERPG 62
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLNSP 93
R P + I + + V F A + LK ++ +
Sbjct: 63 RNPKTGEEIPITARRVVTFHASQKLKSKVEAN 94
>gi|226197835|ref|ZP_03793409.1| integration host factor, beta subunit [Burkholderia pseudomallei
Pakistan 9]
gi|254295622|ref|ZP_04963080.1| integration host factor, beta subunit [Burkholderia pseudomallei
406e]
gi|157805552|gb|EDO82722.1| integration host factor, beta subunit [Burkholderia pseudomallei
406e]
gi|225930023|gb|EEH26036.1| integration host factor, beta subunit [Burkholderia pseudomallei
Pakistan 9]
Length = 90
Score = 86.4 bits (213), Expect = 1e-15, Method: Composition-based stats.
Identities = 32/72 (44%), Positives = 49/72 (68%)
Query: 20 QDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLARAPLAQKVISVEEKMVPF 79
+D + V +L+ M+ AL+ G R+EIRGFGSF + +R AR+ R P + + + V EK VP
Sbjct: 3 KDADFAVKTMLDAMSDALSKGHRIEIRGFGSFGLNRRPARVGRNPKSGEKVQVPEKHVPH 62
Query: 80 FRAGKNLKERLN 91
F+ GK L+ER++
Sbjct: 63 FKPGKELRERVD 74
>gi|77919025|ref|YP_356840.1| integration host factor subunit alpha [Pelobacter carbinolicus
DSM 2380]
gi|77545108|gb|ABA88670.1| integration host factor, alpha subunit [Pelobacter carbinolicus
DSM 2380]
Length = 93
Score = 86.4 bits (213), Expect = 1e-15, Method: Composition-based stats.
Identities = 25/94 (26%), Positives = 48/94 (51%), Gaps = 1/94 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ L+ + K + ++ IV M+ + M L G ++++ GFG+F V+++A R
Sbjct: 1 MTKADLVEKVYLKT-GFSKKESSDIVEMVFDLMKNTLEKGEKIKLAGFGNFVVKQKATRR 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSPD 94
R P + I + + + F+ + LK +N D
Sbjct: 60 GRNPQTGEEIEISSRNILTFKPSQVLKAAINEQD 93
>gi|332529089|ref|ZP_08405053.1| integration host factor subunit alpha [Hylemonella gracilis ATCC
19624]
gi|332041312|gb|EGI77674.1| integration host factor subunit alpha [Hylemonella gracilis ATCC
19624]
Length = 107
Score = 86.4 bits (213), Expect = 1e-15, Method: Composition-based stats.
Identities = 26/89 (29%), Positives = 48/89 (53%), Gaps = 1/89 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ L + ++ LN ++ + +++ + + + L G V+I GFG+F +R +AAR
Sbjct: 14 TKAHLAELLFEQI-GLNKRESKDMIDAFFDLIAERLTEGQDVKISGFGNFQIRTKAARPG 72
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P + I +E + V F A LKE++
Sbjct: 73 RNPRTGEAIPIEARKVVTFHASHKLKEQI 101
>gi|309813267|ref|ZP_07706983.1| DNA-binding protein HU [Dermacoccus sp. Ellin185]
gi|308432763|gb|EFP56679.1| DNA-binding protein HU [Dermacoccus sp. Ellin185]
Length = 119
Score = 86.4 bits (213), Expect = 1e-15, Method: Composition-based stats.
Identities = 27/100 (27%), Positives = 47/100 (47%), Gaps = 3/100 (3%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ L+ + + + + + V +++ + + +A G +V I GFG+F RAAR
Sbjct: 12 MNKADLVDRLEVRLG--SKKAALEAVEAVVDVIIREVAAGNKVGITGFGTFERVDRAART 69
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDSTLSNS 100
R P + + + VP F G N K + + S L S
Sbjct: 70 GRNPRTGEAVRIGATSVPKFTPGTNFK-AVTADPSKLPRS 108
>gi|239907543|ref|YP_002954284.1| HU_IHF family transcriptional regulator [Desulfovibrio magneticus
RS-1]
gi|239797409|dbj|BAH76398.1| HU_IHF family transcriptional regulator [Desulfovibrio magneticus
RS-1]
Length = 92
Score = 86.4 bits (213), Expect = 1e-15, Method: Composition-based stats.
Identities = 35/93 (37%), Positives = 52/93 (55%), Gaps = 1/93 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K LI + +K L+++ + VN E + QAL NG RVE+RGFGSF+V++
Sbjct: 1 MNKGELIKAVGEKY-NLDHEFAVEFVNSFFESIKQALVNGDRVEVRGFGSFAVKEYDGYT 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSP 93
R P + V+ K +PFF+ G++ K LN
Sbjct: 60 GRNPKTGIKVEVKPKKIPFFKTGRDFKNYLNRE 92
>gi|298377242|ref|ZP_06987195.1| integration host factor, beta subunit [Bacteroides sp. 3_1_19]
gi|298265656|gb|EFI07316.1| integration host factor, beta subunit [Bacteroides sp. 3_1_19]
Length = 91
Score = 86.4 bits (213), Expect = 1e-15, Method: Composition-based stats.
Identities = 24/92 (26%), Positives = 48/92 (52%), Gaps = 1/92 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M + L+ ++ ++ L V +VN L + + + G + ++GFGSF +++ RL
Sbjct: 1 MNRGELVQSLVEET-GLPKNVVRAVVNALPTVVAKGIREGESISMKGFGSFVPWQQSERL 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
AR P + + + ++ F+AG +L + LN
Sbjct: 60 ARNPKTGEEVMITPRVSVKFKAGSDLLKELNE 91
>gi|212711444|ref|ZP_03319572.1| hypothetical protein PROVALCAL_02517 [Providencia alcalifaciens
DSM 30120]
gi|212685900|gb|EEB45428.1| hypothetical protein PROVALCAL_02517 [Providencia alcalifaciens
DSM 30120]
Length = 98
Score = 86.4 bits (213), Expect = 1e-15, Method: Composition-based stats.
Identities = 26/89 (29%), Positives = 48/89 (53%), Gaps = 1/89 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ + + +K ++ +D + +V EE+ +L NG +V++ GFG+F +R + R
Sbjct: 4 TKAEMSENLFEKL-GVSKRDAKDLVETFFEEVRLSLENGEQVKLSGFGNFDLRDKNQRPG 62
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P + I + + V FR G+ LK R+
Sbjct: 63 RNPKTGEDIPITARRVVTFRPGQKLKSRV 91
>gi|91790778|ref|YP_551729.1| histone-like DNA-binding protein [Polaromonas sp. JS666]
gi|91700658|gb|ABE46831.1| histone-like DNA-binding protein [Polaromonas sp. JS666]
Length = 103
Score = 86.0 bits (212), Expect = 1e-15, Method: Composition-based stats.
Identities = 29/91 (31%), Positives = 49/91 (53%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M ++ LI TIA + L+ +++ +LLE + +A+ G V++ GFG+F KRAAR
Sbjct: 1 MNRAELIDTIAAET-DLSKAATGRVLEVLLETIQKAVKKGDGVQLVGFGTFKSTKRAART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
+ P + + + VP F AG K ++
Sbjct: 60 GKNPRTGEAVKIPATTVPKFVAGAKFKAVVD 90
>gi|162148654|ref|YP_001603115.1| DNA-binding protein HU [Gluconacetobacter diazotrophicus PAl 5]
gi|161787231|emb|CAP56824.1| putative DNA-binding protein HU [Gluconacetobacter diazotrophicus
PAl 5]
Length = 91
Score = 86.0 bits (212), Expect = 1e-15, Method: Composition-based stats.
Identities = 27/91 (29%), Positives = 37/91 (40%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M + L+ IA L+ D K V+ L+ +T A G V I G F + AR
Sbjct: 1 MKITELVDHIASA-ADLSKADARKAVDALVAAVTDAAKAGDEVTIPDLGKFKTKDVPARE 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P I++ F K LK+ LN
Sbjct: 60 GRNPATGATITIAASRKLTFTPAKALKDSLN 90
>gi|167646994|ref|YP_001684657.1| integration host factor subunit alpha [Caulobacter sp. K31]
gi|189044696|sp|B0T0T0|IHFA_CAUSK RecName: Full=Integration host factor subunit alpha;
Short=IHF-alpha
gi|167349424|gb|ABZ72159.1| integration host factor, alpha subunit [Caulobacter sp. K31]
Length = 100
Score = 86.0 bits (212), Expect = 1e-15, Method: Composition-based stats.
Identities = 27/90 (30%), Positives = 47/90 (52%), Gaps = 1/90 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
++ L + ++ L QD +V L+ + +AL G V++ GFG F VR + AR+
Sbjct: 7 TRADLCEAVHEE-VGLTRQDCAGLVERTLDLVAEALEKGETVKLSGFGVFQVRDKRARMG 65
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + +E + V FRA + +K R++
Sbjct: 66 RNPKTGEPAEIEPRRVIGFRASQVMKARID 95
>gi|94499185|ref|ZP_01305723.1| integration host factor alpha subunit [Oceanobacter sp. RED65]
gi|94428817|gb|EAT13789.1| integration host factor alpha subunit [Oceanobacter sp. RED65]
Length = 104
Score = 86.0 bits (212), Expect = 1e-15, Method: Composition-based stats.
Identities = 23/98 (23%), Positives = 51/98 (52%), Gaps = 1/98 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ + + + LN ++ +++V++ EE+ L +V++ GFG+F +R++ R
Sbjct: 5 TKADMAEKLFDEL-GLNKREAKEMVDIFFEEIRHCLTEKEQVKLSGFGNFDLREKRQRPG 63
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDSTLSN 99
R P + I + + V FR G+ LK ++ + + +
Sbjct: 64 RNPKTGEEIPISARCVVTFRPGQKLKVQVEAYNEANPD 101
>gi|158423235|ref|YP_001524527.1| histone-like DNA-binding protein [Azorhizobium caulinodans ORS
571]
gi|158330124|dbj|BAF87609.1| histone-like bacterial DNA-binding protein [Azorhizobium
caulinodans ORS 571]
Length = 92
Score = 86.0 bits (212), Expect = 1e-15, Method: Composition-based stats.
Identities = 33/90 (36%), Positives = 47/90 (52%), Gaps = 1/90 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ LI +A++ KL V+ + + +AL +G V++ GFGSFSV RAAR
Sbjct: 3 TKNELIAAVAEE-AKLTKAAAAAAVDATFDIIAKALKDGEEVKLIGFGSFSVVTRAAREG 61
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P K + + P F GK LKE +N
Sbjct: 62 RNPRTGKPVKIAASKAPKFTPGKGLKEAVN 91
>gi|117925353|ref|YP_865970.1| histone family protein DNA-binding protein [Magnetococcus sp.
MC-1]
gi|117609109|gb|ABK44564.1| histone family protein DNA-binding protein [Magnetococcus sp.
MC-1]
Length = 91
Score = 86.0 bits (212), Expect = 1e-15, Method: Composition-based stats.
Identities = 37/91 (40%), Positives = 55/91 (60%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI +A++N L+ Q +V+M+ E+ +ALA G RVE+RGFG F R R R
Sbjct: 1 MTKSELILAVAEQNT-LHKQSAVMVVDMVFNELGKALAKGERVELRGFGVFEPRARKPRT 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
AR P K ++VE K F+ G +++ R++
Sbjct: 60 ARNPKTGKKVNVESKTAVHFKPGLDMRRRVD 90
>gi|42523141|ref|NP_968521.1| integration host factor, alpha subunit [Bdellovibrio bacteriovorus
HD100]
gi|39575346|emb|CAE79514.1| integration host factor, alpha subunit [Bdellovibrio bacteriovorus
HD100]
Length = 123
Score = 86.0 bits (212), Expect = 2e-15, Method: Composition-based stats.
Identities = 24/93 (25%), Positives = 49/93 (52%), Gaps = 1/93 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ ++ + +K + ++ ++V ++ + + L +G +V+I GFG+F VR + R+
Sbjct: 15 TKADIVENVYQKI-GFSKKEASELVELVFDTLKTVLQDGEKVKISGFGNFVVRGKNERIG 73
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLNSPD 94
R P + I + + V FR + LK LN +
Sbjct: 74 RNPQTGEQIKISARRVLTFRPSQVLKAMLNGEE 106
>gi|113969892|ref|YP_733685.1| histone family protein DNA-binding protein [Shewanella sp. MR-4]
gi|113884576|gb|ABI38628.1| histone family protein DNA-binding protein [Shewanella sp. MR-4]
Length = 91
Score = 86.0 bits (212), Expect = 2e-15, Method: Composition-based stats.
Identities = 25/92 (27%), Positives = 45/92 (48%), Gaps = 1/92 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI IA + + + +V +L+++ AL+ G +V + FG+F +R +
Sbjct: 1 MNKAQLIQRIATSLEQ-SQASTKPVVEQILQQIHIALSEGEKVFLPQFGTFELRYHLPKS 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P + I + P F+A LK+ +N
Sbjct: 60 GRNPQTGETIEIAGFNQPSFKAATALKQAINE 91
>gi|170744277|ref|YP_001772932.1| integration host factor subunit alpha [Methylobacterium sp. 4-46]
gi|226709735|sp|B0UR46|IHFA_METS4 RecName: Full=Integration host factor subunit alpha;
Short=IHF-alpha
gi|168198551|gb|ACA20498.1| integration host factor, alpha subunit [Methylobacterium sp.
4-46]
Length = 104
Score = 86.0 bits (212), Expect = 2e-15, Method: Composition-based stats.
Identities = 25/90 (27%), Positives = 46/90 (51%), Gaps = 1/90 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
++ L + ++ L+ + +V +L E+ LA+G V++ FGSF VR + R+
Sbjct: 7 TRADLTEAVYQR-VGLSRTESAALVETVLSEICTCLASGETVKLSSFGSFVVRDKGKRVG 65
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P +++E + V F+ LK R+N
Sbjct: 66 RNPKTGVEVAIEPRRVMVFKPSNVLKARIN 95
>gi|126736415|ref|ZP_01752157.1| integration host factor, alpha subunit [Roseobacter sp. CCS2]
gi|126714236|gb|EBA11105.1| integration host factor, alpha subunit [Roseobacter sp. CCS2]
Length = 100
Score = 86.0 bits (212), Expect = 2e-15, Method: Composition-based stats.
Identities = 25/89 (28%), Positives = 46/89 (51%), Gaps = 1/89 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
+ L + + L+ D +V +L ++ +L +G V+I FG+FSVR +AAR+
Sbjct: 7 TRMDLADAVHSQ-VGLSRNDSADLVESVLSHVSDSLVSGETVKISSFGTFSVRDKAARVG 65
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P + + + + V FR +K+R+
Sbjct: 66 RNPKTGEEVPIHPRRVLTFRPSHLMKDRV 94
>gi|296445655|ref|ZP_06887610.1| histone family protein DNA-binding protein [Methylosinus
trichosporium OB3b]
gi|296256900|gb|EFH03972.1| histone family protein DNA-binding protein [Methylosinus
trichosporium OB3b]
Length = 131
Score = 86.0 bits (212), Expect = 2e-15, Method: Composition-based stats.
Identities = 24/90 (26%), Positives = 45/90 (50%), Gaps = 1/90 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
++ L + ++ L+ + + V M+L E+ QA+ G V++ FGSF +R + R+
Sbjct: 34 TRADLADAVHQRI-GLSRTESAEFVEMVLSEIFQAIVAGDDVKLSSFGSFHIRWKNERVG 92
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + + V F+A L+ R+N
Sbjct: 93 RNPKTGAAAPISARRVVMFKASNVLRARIN 122
>gi|254438095|ref|ZP_05051589.1| integration host factor, alpha subunit [Octadecabacter
antarcticus 307]
gi|198253541|gb|EDY77855.1| integration host factor, alpha subunit [Octadecabacter
antarcticus 307]
Length = 92
Score = 86.0 bits (212), Expect = 2e-15, Method: Composition-based stats.
Identities = 26/86 (30%), Positives = 47/86 (54%), Gaps = 1/86 (1%)
Query: 5 SLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLARAP 64
L + ++ L+ + +V +L +M+ ALA G V+I FG+FS+R +AAR+ R P
Sbjct: 2 DLADAVHEE-VGLSRNESSDLVESVLTQMSDALAGGDSVKISSFGTFSIRDKAARIGRNP 60
Query: 65 LAQKVISVEEKMVPFFRAGKNLKERL 90
+ + + + V FR +K+R+
Sbjct: 61 KTGEEVPITPRRVLSFRPSHLMKDRV 86
>gi|300722785|ref|YP_003712076.1| integration host factor (IHF) subunit alpha [Xenorhabdus
nematophila ATCC 19061]
gi|297629293|emb|CBJ89892.1| integration host factor (IHF), alpha subunit, DNA-bending
protein, DNA replication [Xenorhabdus nematophila ATCC
19061]
Length = 98
Score = 86.0 bits (212), Expect = 2e-15, Method: Composition-based stats.
Identities = 26/89 (29%), Positives = 50/89 (56%), Gaps = 1/89 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ + + +K ++ +D + +V + EE+ ++L NG +V++ GFG+F +R + R
Sbjct: 4 TKAEMSENLFEKL-GISKRDAKDLVEIFFEEVRRSLENGEQVKLSGFGNFDLRDKNQRPG 62
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P + I + + V FR G+ LK R+
Sbjct: 63 RNPKTGEDIPITARRVVTFRPGQKLKNRV 91
>gi|225850239|ref|YP_002730473.1| DNA-binding protein HU 1 (DNA-binding protein II) (HB)
[Persephonella marina EX-H1]
gi|225645148|gb|ACO03334.1| DNA-binding protein HU 1 (DNA-binding protein II) (HB)
[Persephonella marina EX-H1]
Length = 95
Score = 86.0 bits (212), Expect = 2e-15, Method: Composition-based stats.
Identities = 39/90 (43%), Positives = 55/90 (61%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS L+ + ++ P L +D+ I+N E MT AL+ G +VEIRG GSF V+ + +R
Sbjct: 1 MKKSDLLNYLIERFPYLKKKDLHTILNGTFEAMTDALSKGDKVEIRGLGSFKVKVKKSRK 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
AR P V+ V EK V F+ GK LK++L
Sbjct: 61 ARNPKTGVVVEVPEKRVVHFKMGKVLKKKL 90
>gi|297156917|gb|ADI06629.1| putative histone-like DNA binding protein [Streptomyces
bingchenggensis BCW-1]
Length = 189
Score = 86.0 bits (212), Expect = 2e-15, Method: Composition-based stats.
Identities = 33/95 (34%), Positives = 52/95 (54%), Gaps = 2/95 (2%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ L+ IA K Q + V+ +L+ M +A+ +G RV + GFGSF +R AR
Sbjct: 1 MNKAQLVEAIADKLGG--RQQAAEAVDAVLDAMVRAVVSGERVSVTGFGSFEKVERPARY 58
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDS 95
AR P + + V++ VP FRAG+ K+ ++
Sbjct: 59 ARNPQTGERVRVKKTSVPRFRAGQGFKDLVSGSKK 93
>gi|258593296|emb|CBE69635.1| DNA-binding protein HU-beta (NS1) (HU-1) [NC10 bacterium 'Dutch
sediment']
Length = 90
Score = 86.0 bits (212), Expect = 2e-15, Method: Composition-based stats.
Identities = 30/90 (33%), Positives = 49/90 (54%), Gaps = 1/90 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ L+ +A K+ + + E + + + +L G +V + GFG+FSV +RAAR
Sbjct: 1 MTKAELVDKVA-KDACITKKAAESALASVTAGIRDSLKKGKKVTLVGFGTFSVARRAARN 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P +I ++ P FRAGK LK+ +
Sbjct: 60 GRNPQTGDIIKIKAAKTPRFRAGKALKDAV 89
>gi|296534243|ref|ZP_06896727.1| integration host factor [Roseomonas cervicalis ATCC 49957]
gi|296265430|gb|EFH11571.1| integration host factor [Roseomonas cervicalis ATCC 49957]
Length = 102
Score = 86.0 bits (212), Expect = 2e-15, Method: Composition-based stats.
Identities = 27/93 (29%), Positives = 47/93 (50%), Gaps = 1/93 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
+ ++ L I + L+ + ++ +LE ++ AL G V+I FG+FSVR++ R+
Sbjct: 4 ITRAQLAEAIYAQ-VGLSRNESAALLEDVLERISAALEAGRPVKISAFGTFSVRQKGMRV 62
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSP 93
R P + + + V FR + LK RLN
Sbjct: 63 GRNPKTGIEVPIMPRRVLSFRPSQVLKARLNGE 95
>gi|325277743|ref|ZP_08143307.1| DNA-binding protein HU [Pseudomonas sp. TJI-51]
gi|324097117|gb|EGB95399.1| DNA-binding protein HU [Pseudomonas sp. TJI-51]
Length = 103
Score = 86.0 bits (212), Expect = 2e-15, Method: Composition-based stats.
Identities = 28/90 (31%), Positives = 50/90 (55%), Gaps = 1/90 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI +A + +L+ +K V+ ++ + +L+ V + GFG F +R AR+
Sbjct: 1 MNKAQLIEQVAAR-AELSQAMAKKAVDAFIDGIKASLSTHTPVALVGFGRFETARRPARV 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P + K +++ M FRAGK+LK+ +
Sbjct: 60 GRDPRSGKPLNIPAAMTVKFRAGKDLKDAV 89
>gi|317133959|ref|YP_004089870.1| histone family protein DNA-binding protein [Ruminococcus albus 7]
gi|315450421|gb|ADU23984.1| histone family protein DNA-binding protein [Ruminococcus albus 7]
Length = 96
Score = 86.0 bits (212), Expect = 2e-15, Method: Composition-based stats.
Identities = 34/96 (35%), Positives = 58/96 (60%), Gaps = 1/96 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI IA+K ++ +K++ +L+ + AL NG +V + GFG+F VR+RAA++
Sbjct: 1 MNKAELINVIAEK-GGYTKKEADKVLTTVLDTIAGALENGEKVTLVGFGTFEVRERAAKV 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDST 96
A P+ + + V + VP F+AG+ LKE + +
Sbjct: 60 ALNPVTKAPVDVPARKVPAFKAGQALKEAVAKAKNK 95
>gi|242278247|ref|YP_002990376.1| histone family protein DNA-binding protein [Desulfovibrio
salexigens DSM 2638]
gi|242121141|gb|ACS78837.1| histone family protein DNA-binding protein [Desulfovibrio
salexigens DSM 2638]
Length = 90
Score = 86.0 bits (212), Expect = 2e-15, Method: Composition-based stats.
Identities = 26/91 (28%), Positives = 44/91 (48%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ L+ I +K +L+ +D ++ +L + L G V + GFG+F +R+AR
Sbjct: 1 MSKTVLVKKIREKL-ELSAKDASAALDGVLSAIEDGLKEEGNVTLTGFGTFKTVERSART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + I + F GK LK+ +
Sbjct: 60 GRNPQTGEAIQIPASRGVKFTPGKFLKDAVK 90
>gi|312143872|ref|YP_003995318.1| histone family protein DNA-binding protein [Halanaerobium sp.
'sapolanicus']
gi|311904523|gb|ADQ14964.1| histone family protein DNA-binding protein [Halanaerobium sp.
'sapolanicus']
Length = 99
Score = 86.0 bits (212), Expect = 2e-15, Method: Composition-based stats.
Identities = 29/99 (29%), Positives = 53/99 (53%), Gaps = 9/99 (9%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALA--------NGGRVEIRGFGSFS 52
M K+ LI +A+ + +D +++N +++ + L + V++ GFG+F
Sbjct: 1 MTKNELIDAVAENT-GITKKDTGEVINNMIDTIMNHLRAEAKKPEDDRDNVQLIGFGTFE 59
Query: 53 VRKRAARLARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
VR R+AR R P + I + + VP FR+GK+ KE ++
Sbjct: 60 VRDRSARKGRNPQTNEEIQIPARKVPVFRSGKSFKETVD 98
>gi|313835866|gb|EFS73580.1| DNA-binding protein HU [Propionibacterium acnes HL037PA2]
gi|314927134|gb|EFS90965.1| DNA-binding protein HU [Propionibacterium acnes HL044PA1]
gi|314970776|gb|EFT14874.1| DNA-binding protein HU [Propionibacterium acnes HL037PA3]
gi|328906040|gb|EGG25815.1| DNA-binding protein HU [Propionibacterium sp. P08]
Length = 91
Score = 86.0 bits (212), Expect = 2e-15, Method: Composition-based stats.
Identities = 25/90 (27%), Positives = 40/90 (44%), Gaps = 1/90 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI +A K L + V L + +T ALA G +V++ G + +R AR
Sbjct: 1 MTKSELIKAVA-KQASLTEAQTNEAVKALTDVITAALAEGEKVQLPGLFTAEAVERPARN 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P + +++ A LK+ +
Sbjct: 60 GRNPRTGESMTIPAHKAVKISASSTLKKAV 89
>gi|169350609|ref|ZP_02867547.1| hypothetical protein CLOSPI_01380 [Clostridium spiroforme DSM 1552]
gi|169292663|gb|EDS74796.1| hypothetical protein CLOSPI_01380 [Clostridium spiroforme DSM 1552]
Length = 103
Score = 86.0 bits (212), Expect = 2e-15, Method: Composition-based stats.
Identities = 27/91 (29%), Positives = 48/91 (52%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K LI +++K+ L +D E +V+ + +T+++ G +V I GFG+F V R AR
Sbjct: 14 MNKKELIESVSKER-NLTKKDAEILVDTVFNTITRSVIEGDKVLISGFGTFKVNDRKARK 72
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
+P Q+ + + F+ LK+ +N
Sbjct: 73 GISPKTQEEMIIPASKTVTFKPSNRLKDAMN 103
>gi|167763758|ref|ZP_02435885.1| hypothetical protein BACSTE_02138 [Bacteroides stercoris ATCC
43183]
gi|167697874|gb|EDS14453.1| hypothetical protein BACSTE_02138 [Bacteroides stercoris ATCC
43183]
Length = 88
Score = 86.0 bits (212), Expect = 2e-15, Method: Composition-based stats.
Identities = 31/86 (36%), Positives = 49/86 (56%), Gaps = 1/86 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI +A + L+ D ++ ++ + +T+AL G +V + GFG+FSV +RA R+
Sbjct: 1 MNKSELISAMAAE-GGLSKADSKRALDAFIASVTKALKAGDKVALVGFGTFSVMERAGRI 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNL 86
P +K I +E K V F+ G L
Sbjct: 60 GINPATKKPIQIEAKKVAKFKPGSEL 85
>gi|294787476|ref|ZP_06752729.1| DNA-binding protein HU [Parascardovia denticolens F0305]
gi|315226953|ref|ZP_07868741.1| DNA-binding protein HU [Parascardovia denticolens DSM 10105]
gi|294484832|gb|EFG32467.1| DNA-binding protein HU [Parascardovia denticolens F0305]
gi|315121085|gb|EFT84217.1| DNA-binding protein HU [Parascardovia denticolens DSM 10105]
Length = 92
Score = 86.0 bits (212), Expect = 2e-15, Method: Composition-based stats.
Identities = 28/89 (31%), Positives = 42/89 (47%), Gaps = 1/89 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
KS L+ IA+K L E VN E + ++L +G + + G S S KRAAR
Sbjct: 4 NKSDLVAKIAQKTS-LTKAQSEAAVNAFQEVLVESLKSGEGLRLTGVLSASRVKRAARTG 62
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P + I++ +AG LK+ +
Sbjct: 63 RNPRTGETINIPAGYGVKLQAGSLLKKAV 91
>gi|258544542|ref|ZP_05704776.1| integration host factor subunit alpha [Cardiobacterium hominis
ATCC 15826]
gi|258520173|gb|EEV89032.1| integration host factor subunit alpha [Cardiobacterium hominis
ATCC 15826]
Length = 98
Score = 86.0 bits (212), Expect = 2e-15, Method: Composition-based stats.
Identities = 27/89 (30%), Positives = 48/89 (53%), Gaps = 1/89 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ ++ +I + + D ++V+ L EE+ LA G V++ GFG+F +R + R
Sbjct: 4 TKADIVESIIAQI-GIPRPDARQMVDDLFEEVRACLATGEAVKLSGFGNFELRDKKQRPG 62
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P + I + + V F+AG+ LK R+
Sbjct: 63 RNPKTGEEIPITARRVVSFKAGQKLKARV 91
>gi|71907345|ref|YP_284932.1| histone-like DNA-binding protein [Dechloromonas aromatica RCB]
gi|71846966|gb|AAZ46462.1| Histone-like bacterial DNA-binding protein [Dechloromonas
aromatica RCB]
Length = 90
Score = 86.0 bits (212), Expect = 2e-15, Method: Composition-based stats.
Identities = 31/91 (34%), Positives = 48/91 (52%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI +IA + ++ + ++ +E + AL G V + GFG+F V +RAAR
Sbjct: 1 MNKTDLIDSIAAQ-ADISKAAAGRALDAAVESIKGALKAGDSVSLIGFGTFYVGERAART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P K + ++ P FR GK LK+ N
Sbjct: 60 GRNPRTGKTLEIKAAKQPKFRPGKGLKDACN 90
>gi|251772980|gb|EES53537.1| histone family protein DNA-binding protein [Leptospirillum
ferrodiazotrophum]
Length = 96
Score = 86.0 bits (212), Expect = 2e-15, Method: Composition-based stats.
Identities = 32/93 (34%), Positives = 49/93 (52%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K L+ +A++ P + +D ++++ LE M + L G VE+R FG VR R+ R
Sbjct: 1 MTKGELVQKLARQFPGIRREDARIMIDLFLESMKEGLREGDTVELRDFGVLRVRTRSERK 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSP 93
AR P + V K VP+F+ + LK L S
Sbjct: 61 ARNPRTGTSVVVGSKKVPYFKQSRILKAMLKSK 93
>gi|16273225|ref|NP_439464.1| integration host factor subunit alpha [Haemophilus influenzae Rd
KW20]
gi|68249973|ref|YP_249085.1| integration host factor subunit alpha [Haemophilus influenzae
86-028NP]
gi|145630800|ref|ZP_01786578.1| predicted transporter [Haemophilus influenzae R3021]
gi|145641673|ref|ZP_01797250.1| hypothetical protein CGSHiR3021_01942 [Haemophilus influenzae
R3021]
gi|260581340|ref|ZP_05849156.1| integration host factor, alpha subunit [Haemophilus influenzae
RdAW]
gi|260582472|ref|ZP_05850263.1| integration host factor, alpha subunit [Haemophilus influenzae
NT127]
gi|319897114|ref|YP_004135309.1| integration host factor (ihf), DNA-binding protein, alpha subunit
[Haemophilus influenzae F3031]
gi|1170524|sp|P43723|IHFA_HAEIN RecName: Full=Integration host factor subunit alpha;
Short=IHF-alpha
gi|81335603|sp|Q4QKM2|IHFA_HAEI8 RecName: Full=Integration host factor subunit alpha;
Short=IHF-alpha
gi|1574771|gb|AAC22959.1| integration host factor, alpha-subunit (himA) [Haemophilus
influenzae Rd KW20]
gi|68058172|gb|AAX88425.1| integration host factor alpha-subunit [Haemophilus influenzae
86-028NP]
gi|144983682|gb|EDJ91142.1| predicted transporter [Haemophilus influenzae R3021]
gi|145273720|gb|EDK13589.1| hypothetical protein CGSHiR3021_01942 [Haemophilus influenzae
22.4-21]
gi|260092007|gb|EEW75954.1| integration host factor, alpha subunit [Haemophilus influenzae
RdAW]
gi|260094452|gb|EEW78349.1| integration host factor, alpha subunit [Haemophilus influenzae
NT127]
gi|309973174|gb|ADO96375.1| Integration host factor, alpha subunit [Haemophilus influenzae
R2846]
gi|317432618|emb|CBY80979.1| integration host factor (IHF), DNA-binding protein, alpha subunit
[Haemophilus influenzae F3031]
Length = 96
Score = 86.0 bits (212), Expect = 2e-15, Method: Composition-based stats.
Identities = 28/94 (29%), Positives = 51/94 (54%), Gaps = 1/94 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
+ K +I ++ K L+ QD + +V LEE+ +L +G V++ GFG+F +R +++R
Sbjct: 4 ITKLDIIEYLSDKY-HLSKQDTKNVVENFLEEIRLSLESGQDVKLSGFGNFELRDKSSRP 62
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSPD 94
R P V+ V + V F+ G+ L+ R+
Sbjct: 63 GRNPKTGDVVPVSARRVVTFKPGQKLRARVEKTK 96
>gi|163793229|ref|ZP_02187205.1| Integration host factor, alpha subunit [alpha proteobacterium
BAL199]
gi|159181875|gb|EDP66387.1| Integration host factor, alpha subunit [alpha proteobacterium
BAL199]
Length = 106
Score = 86.0 bits (212), Expect = 2e-15, Method: Composition-based stats.
Identities = 28/91 (30%), Positives = 50/91 (54%), Gaps = 1/91 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
++ L ++ ++ L+ + ++V +L+EM ALA G V+I FGSFSVR++ R+
Sbjct: 11 TRAQLSESVYEE-VGLSRNESAELVESVLDEMIAALARGEMVKISSFGSFSVRQKGRRVG 69
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P + + + V FR LK ++N+
Sbjct: 70 RNPKTGDEVPILPRKVLVFRPSHVLKNQINA 100
>gi|307298658|ref|ZP_07578461.1| histone family protein DNA-binding protein [Thermotogales
bacterium mesG1.Ag.4.2]
gi|306915823|gb|EFN46207.1| histone family protein DNA-binding protein [Thermotogales
bacterium mesG1.Ag.4.2]
Length = 90
Score = 86.0 bits (212), Expect = 2e-15, Method: Composition-based stats.
Identities = 29/90 (32%), Positives = 48/90 (53%), Gaps = 1/90 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K LI +A+K + V +++ ++ + + L+ V++ GFG+F V KR AR
Sbjct: 1 MNKKELIAVLAEKT-GATKKLVGDVIDGFIDVVGEELSKNEEVKLVGFGTFEVTKRKARK 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
P ++ I + VP FR GK LKE++
Sbjct: 60 GVNPRTKEAIEIPGGKVPKFRPGKELKEKV 89
>gi|261344010|ref|ZP_05971655.1| integration host factor, alpha subunit [Providencia rustigianii
DSM 4541]
gi|282568401|gb|EFB73936.1| integration host factor, alpha subunit [Providencia rustigianii
DSM 4541]
Length = 98
Score = 86.0 bits (212), Expect = 2e-15, Method: Composition-based stats.
Identities = 26/96 (27%), Positives = 48/96 (50%), Gaps = 1/96 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ + + +K ++ +D + +V EE+ +L NG +V++ GFG+F +R + R
Sbjct: 4 TKAEMSEKLFEKL-GVSKRDAKDLVETFFEEVRLSLENGEQVKLSGFGNFDLRDKNQRPG 62
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDSTL 97
R P + I + + V FR G+ LK R+
Sbjct: 63 RNPKTGEDIPITARRVVTFRPGQKLKNRVEKATPKD 98
>gi|117926043|ref|YP_866660.1| histone family protein DNA-binding protein [Magnetococcus sp.
MC-1]
gi|117609799|gb|ABK45254.1| histone family protein DNA-binding protein [Magnetococcus sp.
MC-1]
Length = 91
Score = 85.6 bits (211), Expect = 2e-15, Method: Composition-based stats.
Identities = 35/91 (38%), Positives = 56/91 (61%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI +A++N L+ Q +V+M+ E+ +ALA G RVE+RGFG F R R R
Sbjct: 1 MTKSELILAVAEQNT-LHKQSAVMVVDMVFNELGKALAKGERVELRGFGVFEPRARKPRT 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
A+ P + ++VE K F+ G ++++R++
Sbjct: 60 AKNPKTGEKVNVEPKTAVHFKPGLDMRKRVD 90
>gi|323489683|ref|ZP_08094910.1| DNA-binding protein HU (DNA-binding protein II) (HB) [Planococcus
donghaensis MPA1U2]
gi|323396814|gb|EGA89633.1| DNA-binding protein HU (DNA-binding protein II) (HB) [Planococcus
donghaensis MPA1U2]
Length = 90
Score = 85.6 bits (211), Expect = 2e-15, Method: Composition-based stats.
Identities = 33/91 (36%), Positives = 52/91 (57%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ L+ ++A+ +L+ +D K V+ E + AL G +V++ GFG+F VR+RAAR
Sbjct: 1 MNKTELVNSVAEA-AELSRKDAAKAVDAAFETIQDALTKGEKVQLIGFGNFEVRERAARK 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P I + VP F+ GK LK+ +
Sbjct: 60 GRNPQTGAEIEIAASKVPAFKPGKALKDAVK 90
>gi|320539031|ref|ZP_08038706.1| integration host factor (IHF), DNA-binding protein, alpha subunit
[Serratia symbiotica str. Tucson]
gi|320030964|gb|EFW12968.1| integration host factor (IHF), DNA-binding protein, alpha subunit
[Serratia symbiotica str. Tucson]
Length = 98
Score = 85.6 bits (211), Expect = 2e-15, Method: Composition-based stats.
Identities = 27/95 (28%), Positives = 52/95 (54%), Gaps = 1/95 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ + + +K L+ +D + +V + EE+ +AL +G +V++ GFG+F +R + R
Sbjct: 4 TKAEMSEYLFEKL-GLSKRDAKDLVELFFEEVRRALESGEQVKLSGFGNFDLRDKNQRPG 62
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDST 96
R P + I + + V FR+G+ LK R+ +
Sbjct: 63 RNPKTGEDIPITARRVVTFRSGQKLKSRVENASPK 97
>gi|194335610|ref|YP_002017404.1| histone family protein DNA-binding protein [Pelodictyon
phaeoclathratiforme BU-1]
gi|194308087|gb|ACF42787.1| histone family protein DNA-binding protein [Pelodictyon
phaeoclathratiforme BU-1]
Length = 102
Score = 85.6 bits (211), Expect = 2e-15, Method: Composition-based stats.
Identities = 34/98 (34%), Positives = 53/98 (54%), Gaps = 1/98 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ L+ IA K L + E +V+ L E + +L G R+EIRGFGSF++R + R A
Sbjct: 6 TKADLVNVIAHKT-GLTKNETESVVDSLFESIIDSLKTGKRIEIRGFGSFNIRHKNFRQA 64
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDSTLSN 99
R P + ++VE K VP F+ K K ++ + +
Sbjct: 65 RNPRTGEKVTVEPKNVPTFKISKEFKHAVSESLKSDTE 102
>gi|121605741|ref|YP_983070.1| integration host factor subunit alpha [Polaromonas
naphthalenivorans CJ2]
gi|166918514|sp|A1VR71|IHFA_POLNA RecName: Full=Integration host factor subunit alpha;
Short=IHF-alpha
gi|120594710|gb|ABM38149.1| integration host factor, alpha subunit [Polaromonas
naphthalenivorans CJ2]
Length = 123
Score = 85.6 bits (211), Expect = 2e-15, Method: Composition-based stats.
Identities = 26/89 (29%), Positives = 48/89 (53%), Gaps = 1/89 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ L + ++ LN ++ +++++ E ++ L G V+I GFG+F +R +A R
Sbjct: 14 TKAHLAELLFEQI-GLNKRESKEMIDAFFELISDRLVEGKDVKISGFGNFQIRTKAPRPG 72
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P + I +E + V F A LKE++
Sbjct: 73 RNPRTGEAIPIESRRVVTFHASHKLKEQI 101
>gi|295101017|emb|CBK98562.1| Bacterial nucleoid DNA-binding protein [Faecalibacterium
prausnitzii L2-6]
Length = 89
Score = 85.6 bits (211), Expect = 2e-15, Method: Composition-based stats.
Identities = 30/90 (33%), Positives = 49/90 (54%), Gaps = 1/90 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI +A +++ + E VN E + +A+A G ++ I GFG+F VR+RA R
Sbjct: 1 MTKTDLIAQVAANT-EMSKKSAEMAVNAAFEALGKAMAEGEKISISGFGTFEVRERAERQ 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
P ++ I++ F+ GK LK+ L
Sbjct: 60 GINPRTREPITIAASKSIVFKPGKALKDTL 89
>gi|291287116|ref|YP_003503932.1| histone family protein DNA-binding protein [Denitrovibrio
acetiphilus DSM 12809]
gi|290884276|gb|ADD67976.1| histone family protein DNA-binding protein [Denitrovibrio
acetiphilus DSM 12809]
Length = 91
Score = 85.6 bits (211), Expect = 2e-15, Method: Composition-based stats.
Identities = 28/91 (30%), Positives = 47/91 (51%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ ++ I +K L +D+ K+V+ L E+ + V+I GFG+F V+KR R+
Sbjct: 1 MTKADIVELIHEKL-GLTKKDIAKVVDELFNEVRDQILGKNNVKISGFGNFEVKKRGRRI 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P +E + V FR + K+ +N
Sbjct: 60 GRNPKTGVETVIEPRTVVVFRPSQIFKDEVN 90
>gi|19918954|dbj|BAB88690.1| histone-like HU protein HBl [Bifidobacterium longum biovar
Longum]
Length = 93
Score = 85.6 bits (211), Expect = 2e-15, Method: Composition-based stats.
Identities = 25/89 (28%), Positives = 39/89 (43%), Gaps = 1/89 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
KS L+ IA+K+ L E VN + +A+ +G +++ G S KR AR
Sbjct: 4 NKSDLVSKIAQKS-NLTKAQAEAAVNAFQDVFVEAMKSGEGLKLTGLFSAERVKRPARTG 62
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P + I + AG LK+ +
Sbjct: 63 RNPRTGEQIDIPASYGVRISAGSLLKKAV 91
>gi|88799151|ref|ZP_01114731.1| probable DNA-binding protein [Reinekea sp. MED297]
gi|88778134|gb|EAR09329.1| probable DNA-binding protein [Reinekea sp. MED297]
Length = 95
Score = 85.6 bits (211), Expect = 2e-15, Method: Composition-based stats.
Identities = 30/91 (32%), Positives = 49/91 (53%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K L IA++ L+ +++N+LL+++TQ++A V + GFG+F R RA R
Sbjct: 6 MRKPELAAAIAER-ADLSKDKAGEVLNVLLDQITQSVAKKESVTLVGFGTFEARSRAKRK 64
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
+ P I + F+AGK LK+ +N
Sbjct: 65 GKNPQTGAEIEIPASNTVAFKAGKALKDAVN 95
>gi|117925344|ref|YP_865961.1| histone family protein DNA-binding protein [Magnetococcus sp.
MC-1]
gi|117926106|ref|YP_866723.1| nucleoid protein Hbs [Magnetococcus sp. MC-1]
gi|117609100|gb|ABK44555.1| histone family protein DNA-binding protein [Magnetococcus sp.
MC-1]
gi|117609862|gb|ABK45317.1| bacterial nucleoid protein Hbs [Magnetococcus sp. MC-1]
Length = 91
Score = 85.6 bits (211), Expect = 2e-15, Method: Composition-based stats.
Identities = 30/91 (32%), Positives = 46/91 (50%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M + L +A+ + L+ + +K + MT AL G V I GFG+F + +RAAR
Sbjct: 1 MNLTELKKAVAE-SSGLSQANADKAIKATFAAMTDALKGGDGVSISGFGAFQIDERAART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + I + F+AGK LK+ +N
Sbjct: 60 GRNPKTGQEIKIAASKNVKFKAGKVLKDAVN 90
>gi|212696155|ref|ZP_03304283.1| hypothetical protein ANHYDRO_00691 [Anaerococcus hydrogenalis DSM
7454]
gi|325846494|ref|ZP_08169409.1| DNA-binding protein HU-beta [Anaerococcus hydrogenalis
ACS-025-V-Sch4]
gi|212676784|gb|EEB36391.1| hypothetical protein ANHYDRO_00691 [Anaerococcus hydrogenalis DSM
7454]
gi|325481252|gb|EGC84293.1| DNA-binding protein HU-beta [Anaerococcus hydrogenalis
ACS-025-V-Sch4]
Length = 93
Score = 85.6 bits (211), Expect = 2e-15, Method: Composition-based stats.
Identities = 34/94 (36%), Positives = 54/94 (57%), Gaps = 2/94 (2%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS L+ I++K+ L + E+ +N +E +T++L +V++ GFG+F R R AR
Sbjct: 1 MNKSELLVNISEKS-GLKKVEAERALNAFIETVTESLQKEEKVQLVGFGTFETRDRKARE 59
Query: 61 ARAPLA-QKVISVEEKMVPFFRAGKNLKERLNSP 93
R P +VI + P F+AGK LKE +N+
Sbjct: 60 GRNPRKPDEVIKIPASKAPVFKAGKTLKEAVNNK 93
>gi|50955922|ref|YP_063210.1| DNA-binding HU protein [Leifsonia xyli subsp. xyli str. CTCB07]
gi|50952404|gb|AAT90105.1| DNA-binding HU protein [Leifsonia xyli subsp. xyli str. CTCB07]
Length = 94
Score = 85.6 bits (211), Expect = 2e-15, Method: Composition-based stats.
Identities = 21/90 (23%), Positives = 38/90 (42%), Gaps = 1/90 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ L+ +A + + + V +V+ + + GG+V I G+ + + AAR
Sbjct: 6 NKTELVSAVAAASGQ-SQATVAAVVDAFFATVADTVKGGGKVTIPGWLAAERTQTAARTG 64
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + IS+ AG LK +
Sbjct: 65 RNPQTGEEISIPAGHRVKLTAGSKLKAAVK 94
>gi|186683346|ref|YP_001866542.1| histone family protein DNA-binding protein [Nostoc punctiforme
PCC 73102]
gi|186465798|gb|ACC81599.1| histone family protein DNA-binding protein [Nostoc punctiforme
PCC 73102]
Length = 91
Score = 85.6 bits (211), Expect = 2e-15, Method: Composition-based stats.
Identities = 30/90 (33%), Positives = 51/90 (56%), Gaps = 1/90 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K L+ +A K + + +++++ L +T+A+ANG +V + GFGSF R+RA R
Sbjct: 1 MNKGELVDAVAAKT-NITKKQADEVISAFLSVVTEAVANGDKVTLVGFGSFERRERAERE 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P + +++ VP F GK KE++
Sbjct: 60 GRNPKTNEPMTIPATRVPGFSPGKQFKEKV 89
>gi|295689080|ref|YP_003592773.1| integration host factor subunit alpha [Caulobacter segnis ATCC
21756]
gi|295430983|gb|ADG10155.1| integration host factor, alpha subunit [Caulobacter segnis ATCC
21756]
Length = 100
Score = 85.6 bits (211), Expect = 2e-15, Method: Composition-based stats.
Identities = 27/90 (30%), Positives = 47/90 (52%), Gaps = 1/90 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
++ L + ++ L QD +V L+ + +AL G V++ GFG F VR + AR+
Sbjct: 7 TRADLCEAVHEE-VGLTRQDCAGLVERTLDLVAEALEKGETVKLSGFGVFQVRSKRARMG 65
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + +E + V FRA + +K R++
Sbjct: 66 RNPKTGEPAEIEPRRVIGFRASQVMKARID 95
>gi|262384433|ref|ZP_06077568.1| DNA-binding protein HU-beta [Bacteroides sp. 2_1_33B]
gi|262294136|gb|EEY82069.1| DNA-binding protein HU-beta [Bacteroides sp. 2_1_33B]
Length = 91
Score = 85.6 bits (211), Expect = 2e-15, Method: Composition-based stats.
Identities = 24/92 (26%), Positives = 48/92 (52%), Gaps = 1/92 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M + L+ ++ ++ L V +VN L + + + G + ++GFGSF +++ RL
Sbjct: 1 MNRGELVQSLVEET-GLPKNVVRTVVNALPTVVAKGIREGESISMKGFGSFVPWQQSERL 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
AR P + + + ++ F+AG +L + LN
Sbjct: 60 ARNPKTGEEVMITPRVSVKFKAGSDLLKELNE 91
>gi|182678712|ref|YP_001832858.1| histone family protein DNA-binding protein [Beijerinckia indica
subsp. indica ATCC 9039]
gi|182634595|gb|ACB95369.1| histone family protein DNA-binding protein [Beijerinckia indica
subsp. indica ATCC 9039]
Length = 122
Score = 85.6 bits (211), Expect = 2e-15, Method: Composition-based stats.
Identities = 27/90 (30%), Positives = 45/90 (50%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
++ L+ I L+ +I M LEE+++AL G V++R FG FSVR + R+
Sbjct: 21 TRADLLDAIYTSCSFLSRAQTREIFEMALEEISEALLRGETVKLRSFGLFSVRAKRERIG 80
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + ++ + V F+A L +N
Sbjct: 81 RNPRTGVEVPIKPRRVLTFKASPVLAASVN 110
>gi|302542250|ref|ZP_07294592.1| putative DNA binding protein HU [Streptomyces hygroscopicus ATCC
53653]
gi|302459868|gb|EFL22961.1| putative DNA binding protein HU [Streptomyces himastatinicus ATCC
53653]
Length = 194
Score = 85.6 bits (211), Expect = 2e-15, Method: Composition-based stats.
Identities = 32/95 (33%), Positives = 51/95 (53%), Gaps = 2/95 (2%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ L+ IA K Q + V+ +L+ + +A+ G RV + GFGSF +R AR
Sbjct: 1 MNKAQLVEAIADKVGG--RQQAAEAVDAVLDAIVRAVVGGDRVSVTGFGSFEKVERPARY 58
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDS 95
AR P + + V++ VP FRAG+ K+ ++
Sbjct: 59 ARNPQTGERVRVKKTSVPRFRAGQGFKDLVSGSKK 93
>gi|126729742|ref|ZP_01745555.1| integration host factor, alpha subunit [Sagittula stellata E-37]
gi|126709861|gb|EBA08914.1| integration host factor, alpha subunit [Sagittula stellata E-37]
Length = 100
Score = 85.6 bits (211), Expect = 2e-15, Method: Composition-based stats.
Identities = 26/89 (29%), Positives = 51/89 (57%), Gaps = 1/89 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
+ L + ++ L+ + ++V +L+ M+ AL G +V+I FG+FSVR++AAR+
Sbjct: 7 TRMDLSEAVFRE-VGLSRNESAELVEAVLQHMSDALVEGEQVKISSFGTFSVREKAARVG 65
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P + + ++ + V FR +K+R+
Sbjct: 66 RNPKTGEEVPIQPRRVLTFRPSHLMKDRV 94
>gi|117920062|ref|YP_869254.1| histone family protein DNA-binding protein [Shewanella sp. ANA-3]
gi|117612394|gb|ABK47848.1| histone family protein DNA-binding protein [Shewanella sp. ANA-3]
Length = 91
Score = 85.6 bits (211), Expect = 2e-15, Method: Composition-based stats.
Identities = 24/92 (26%), Positives = 44/92 (47%), Gaps = 1/92 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI IA + + +V +L+++ AL+ G +V + FG+F +R +
Sbjct: 1 MNKAQLIQRIATSLEQ-SQASTRPVVEQILQQIHIALSEGEKVFLPQFGTFELRYHLPKS 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P + + + P F+A LK+ +N
Sbjct: 60 GRNPQTGETMEIAGFNQPSFKAATALKQAINE 91
>gi|307297819|ref|ZP_07577625.1| histone family protein DNA-binding protein [Thermotogales
bacterium mesG1.Ag.4.2]
gi|306917079|gb|EFN47461.1| histone family protein DNA-binding protein [Thermotogales
bacterium mesG1.Ag.4.2]
Length = 90
Score = 85.6 bits (211), Expect = 2e-15, Method: Composition-based stats.
Identities = 31/91 (34%), Positives = 49/91 (53%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K LI IA+K + +D K ++ +++ + + L+ G V + GFG+F V R AR
Sbjct: 1 MNKKELIAEIAEKT-GVTKKDAGKTLDTVIDIIEKTLSKGDVVRLVGFGTFMVASRKARK 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
P +K I++ VP F GK LKE++
Sbjct: 60 GVNPRTKKPITIPGGKVPKFVPGKELKEKVK 90
>gi|169825341|ref|YP_001691234.1| hypothetical protein M446_6976 [Methylobacterium sp. 4-46]
gi|168199263|gb|ACA21209.1| hypothetical protein M446_6976 [Methylobacterium sp. 4-46]
Length = 102
Score = 85.6 bits (211), Expect = 2e-15, Method: Composition-based stats.
Identities = 34/97 (35%), Positives = 54/97 (55%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M++S IA+ NP L +V +L+ + + LA+G RVE+RGFG+F R AR
Sbjct: 1 MLRSQFTRRIAELNPHLRSGQANAVVRAVLDRIAEGLADGSRVELRGFGAFKTVTRDARP 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDSTL 97
+R P ++++V K F+A + +RLN D+ L
Sbjct: 61 SRNPRTGELVTVPAKRDVKFKASVEVTKRLNPTDNRL 97
>gi|239908260|ref|YP_002955001.1| HU_IHF family transcriptional regulator [Desulfovibrio magneticus
RS-1]
gi|239798126|dbj|BAH77115.1| HU_IHF family transcriptional regulator [Desulfovibrio magneticus
RS-1]
Length = 92
Score = 85.6 bits (211), Expect = 2e-15, Method: Composition-based stats.
Identities = 37/93 (39%), Positives = 52/93 (55%), Gaps = 1/93 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K LI + +K L+Y+ VN+ + + QAL N RVEIRGFGSF+V+K
Sbjct: 1 MNKGELIKAVGEKY-NLDYEFAVDFVNLFFDSIRQALNNEDRVEIRGFGSFAVKKYNGYT 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSP 93
R P + ++ K +PFF+ GK+ KE LN
Sbjct: 60 GRNPKTGVTVEIKPKKLPFFKPGKDFKEYLNRK 92
>gi|167461596|ref|ZP_02326685.1| DNA-binding protein HU [Paenibacillus larvae subsp. larvae
BRL-230010]
Length = 114
Score = 85.6 bits (211), Expect = 2e-15, Method: Composition-based stats.
Identities = 32/91 (35%), Positives = 49/91 (53%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K L+ +A K+ + ++ EK V +L+ + +AL G V++ GFG F VR R AR+
Sbjct: 23 MNKEQLVEVVA-KSSGFSKKNAEKAVTHVLDSIFEALKQGKEVQLVGFGKFDVRSREARM 81
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R + + + VP F AG LK+ LN
Sbjct: 82 GRNRKTGEEVELPAGKVPVFTAGITLKKALN 112
>gi|189424947|ref|YP_001952124.1| histone family protein DNA-binding protein [Geobacter lovleyi SZ]
gi|189421206|gb|ACD95604.1| histone family protein DNA-binding protein [Geobacter lovleyi SZ]
Length = 93
Score = 85.6 bits (211), Expect = 2e-15, Method: Composition-based stats.
Identities = 25/94 (26%), Positives = 51/94 (54%), Gaps = 1/94 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ ++ I +K L+ ++ ++V M+ M L +G +++I GFG+F V+++A R
Sbjct: 1 MTKADIVERIHQKI-GLSKKESAEMVEMVFGIMKNTLESGEKIKIAGFGNFVVKQKADRR 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSPD 94
R P I++ + + F+ + LK +N +
Sbjct: 60 GRNPQTGDAITISARRILTFKPSQVLKSGINDEE 93
>gi|148255979|ref|YP_001240564.1| integration host factor subunit alpha [Bradyrhizobium sp. BTAi1]
gi|166918499|sp|A5EKG4|IHFA_BRASB RecName: Full=Integration host factor subunit alpha;
Short=IHF-alpha
gi|146408152|gb|ABQ36658.1| integration host factor alpha-subunit (IHF-alpha) [Bradyrhizobium
sp. BTAi1]
Length = 119
Score = 85.6 bits (211), Expect = 2e-15, Method: Composition-based stats.
Identities = 26/95 (27%), Positives = 46/95 (48%), Gaps = 1/95 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
+ L + +K L+ + V ++L+E+T L G V++ FGSF VRK+ R+
Sbjct: 9 TRVDLCEAVYQK-VGLSRTESSAFVELVLKEITDCLERGETVKLSSFGSFMVRKKGQRIG 67
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDST 96
R P + + + V F+ LK+R+N +
Sbjct: 68 RNPKTGTEVPISPRRVMVFKPSAILKQRINGQQGS 102
>gi|330720848|gb|EGG99044.1| Integration host factor alpha subunit [gamma proteobacterium
IMCC2047]
Length = 100
Score = 85.6 bits (211), Expect = 2e-15, Method: Composition-based stats.
Identities = 26/89 (29%), Positives = 49/89 (55%), Gaps = 1/89 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+++ + + LN ++ ++IV M E+ Q+L N +V++ GFG+F +R + R
Sbjct: 5 TKAAIAEKLFDEL-GLNKREAKEIVEMFFGEVRQSLINNDQVKLSGFGNFGLRDKKERPG 63
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P + I + + V FR G+ LK ++
Sbjct: 64 RNPKTGEDIPISARRVVTFRPGQKLKAKV 92
>gi|300115489|ref|YP_003762064.1| histone family protein DNA-binding protein [Nitrosococcus
watsonii C-113]
gi|299541426|gb|ADJ29743.1| histone family protein DNA-binding protein [Nitrosococcus
watsonii C-113]
Length = 94
Score = 85.6 bits (211), Expect = 2e-15, Method: Composition-based stats.
Identities = 34/90 (37%), Positives = 54/90 (60%), Gaps = 1/90 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ L+ + + L+ ++ VN L + +T L+ G+V + GFGSFSV+KRAAR
Sbjct: 1 MNKTELVNFVVLE-ANLSQAVAQRAVNALFQTITGVLSEKGKVNLAGFGSFSVQKRAARS 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P + +VI+++ K VP F+ LKE +
Sbjct: 60 GRHPQSGEVIAIQAKSVPTFKPSNALKEIV 89
>gi|163846249|ref|YP_001634293.1| histone family protein DNA-binding protein [Chloroflexus
aurantiacus J-10-fl]
gi|222524004|ref|YP_002568474.1| histone family protein DNA-binding protein [Chloroflexus sp.
Y-400-fl]
gi|163667538|gb|ABY33904.1| histone family protein DNA-binding protein [Chloroflexus
aurantiacus J-10-fl]
gi|222447883|gb|ACM52149.1| histone family protein DNA-binding protein [Chloroflexus sp.
Y-400-fl]
Length = 91
Score = 85.6 bits (211), Expect = 2e-15, Method: Composition-based stats.
Identities = 30/90 (33%), Positives = 51/90 (56%), Gaps = 1/90 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ I +A++ K++ ++ + I++ LE +T+ALA G +V + GFG+F VR R AR
Sbjct: 1 MQKTDFIKAVAER-AKVSQKETKLIIDAALEVITEALARGEKVTLTGFGTFEVRSRQARE 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
P ++ + + P F A LKE +
Sbjct: 60 GVNPQTREKMHIPATKTPGFSASSTLKEAV 89
>gi|297587538|ref|ZP_06946182.1| DNA-binding protein HU [Finegoldia magna ATCC 53516]
gi|297574227|gb|EFH92947.1| DNA-binding protein HU [Finegoldia magna ATCC 53516]
Length = 96
Score = 85.6 bits (211), Expect = 2e-15, Method: Composition-based stats.
Identities = 36/97 (37%), Positives = 59/97 (60%), Gaps = 2/97 (2%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS L+ +IAKK+ +L+ + E+ +N ++ + + LA G +V++ GFG+F R+R AR
Sbjct: 1 MNKSELLTSIAKKS-ELSKVESERALNAFIKTVEETLAKGEKVQLVGFGTFESRERKARE 59
Query: 61 ARAPLA-QKVISVEEKMVPFFRAGKNLKERLNSPDST 96
R P ++ I + P F+AGK+LKE +N S
Sbjct: 60 GRNPRNPEEKIQIPASNAPVFKAGKSLKEAVNKKKSK 96
>gi|257469647|ref|ZP_05633739.1| DNA-binding protein HU [Fusobacterium ulcerans ATCC 49185]
gi|317063883|ref|ZP_07928368.1| DNA-binding protein HU [Fusobacterium ulcerans ATCC 49185]
gi|313689559|gb|EFS26394.1| DNA-binding protein HU [Fusobacterium ulcerans ATCC 49185]
Length = 91
Score = 85.6 bits (211), Expect = 2e-15, Method: Composition-based stats.
Identities = 26/91 (28%), Positives = 48/91 (52%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K + +K ++ + E+ V+ +L E+ + L +G + G+G F V ++A R+
Sbjct: 1 MTKKDFAKALFEKGIFVSKAESERKVDAILTEIEEVLKSGDELNFIGWGKFEVVQKAERM 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + I +E K F+AGK L +++N
Sbjct: 61 GRNPKTGEEIKIEAKKTVKFKAGKTLTDKMN 91
>gi|218961994|ref|YP_001741769.1| DNA-binding protein HU (DNA-binding protein II) (TL29)
[Candidatus Cloacamonas acidaminovorans]
gi|167730651|emb|CAO81563.1| DNA-binding protein HU (DNA-binding protein II) (TL29)
[Candidatus Cloacamonas acidaminovorans]
Length = 95
Score = 85.6 bits (211), Expect = 2e-15, Method: Composition-based stats.
Identities = 27/96 (28%), Positives = 51/96 (53%), Gaps = 1/96 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ L+ I++ + +DV +V+ LL + ++A G +EIRGFG+F ++ R R+
Sbjct: 1 MTKADLVKIISENT-GIIRKDVAVVVDALLYAIKDSMAKGNHIEIRGFGTFKLKTRKPRV 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDST 96
R P + + V + VP F+ + K + + +
Sbjct: 60 GRNPKTDQKVPVPARTVPTFKFSREFKNAVVNVKTK 95
>gi|197118378|ref|YP_002138805.1| integration host factor subunit alpha [Geobacter bemidjiensis
Bem]
gi|253700842|ref|YP_003022031.1| histone family protein DNA-binding protein [Geobacter sp. M21]
gi|197087738|gb|ACH39009.1| integration host factor, alpha subunit [Geobacter bemidjiensis
Bem]
gi|251775692|gb|ACT18273.1| histone family protein DNA-binding protein [Geobacter sp. M21]
Length = 92
Score = 85.6 bits (211), Expect = 2e-15, Method: Composition-based stats.
Identities = 22/91 (24%), Positives = 49/91 (53%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ ++ I +K + ++ ++V + + + L G +++I GFG+F V+++A R
Sbjct: 1 MTKADIVEKIYEK-VGFSKKESAELVETVFDLIKTTLEEGDKIKIAGFGNFVVKEKADRR 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + I++ + + F+ + LK +N
Sbjct: 60 GRNPQTGEEITIVARKILTFKPSQVLKSAIN 90
>gi|91787441|ref|YP_548393.1| histone-like protein DNA-binding protein [Polaromonas sp. JS666]
gi|91696666|gb|ABE43495.1| HU family DNA-binding protein [Polaromonas sp. JS666]
Length = 103
Score = 85.6 bits (211), Expect = 2e-15, Method: Composition-based stats.
Identities = 24/91 (26%), Positives = 49/91 (53%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M ++ LI +IA + L+ +++++L++ + + + G V++ GFG+F KR+AR
Sbjct: 1 MNRAELIESIAAET-DLSKAATGRVLDVLIDTIQKTVKKGDAVQLVGFGTFKSTKRSART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
+ P + + + VP F AG K ++
Sbjct: 60 GKNPRTGEAVKIPATTVPKFVAGAKFKAVVD 90
>gi|301308636|ref|ZP_07214588.1| putative virulence-associated protein [Bacteroides sp. 20_3]
gi|300833160|gb|EFK63778.1| putative virulence-associated protein [Bacteroides sp. 20_3]
Length = 91
Score = 85.6 bits (211), Expect = 2e-15, Method: Composition-based stats.
Identities = 24/92 (26%), Positives = 48/92 (52%), Gaps = 1/92 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M + L+ ++ ++ L V +VN L + + + G + ++GFGSF +++ RL
Sbjct: 1 MNRGELVQSLVEET-GLPKNVVRTVVNALPTVVAKGMREGESISMKGFGSFVPWQQSERL 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
AR P + + + ++ F+AG +L + LN
Sbjct: 60 ARNPKTGEEVMITPRVSVKFKAGSDLLKELNE 91
>gi|219681418|ref|YP_002467803.1| DNA-binding protein hu-alpha [Buchnera aphidicola str. 5A
(Acyrthosiphon pisum)]
gi|257471092|ref|ZP_05635091.1| DNA-binding protein hu-alpha [Buchnera aphidicola str. LSR1
(Acyrthosiphon pisum)]
gi|219624261|gb|ACL30416.1| DNA-binding protein hu-alpha [Buchnera aphidicola str. 5A
(Acyrthosiphon pisum)]
Length = 92
Score = 85.6 bits (211), Expect = 2e-15, Method: Composition-based stats.
Identities = 31/92 (33%), Positives = 46/92 (50%), Gaps = 1/92 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI I+KK+ L+ + + L + +L G V+I GFG+F V R++R
Sbjct: 1 MNKTQLINVISKKS-NLSKTQAKLTLETTLSTIIDSLKKGESVQIVGFGTFKVNLRSSRT 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P K I + VP F +GK LK +
Sbjct: 60 GRNPQTGKEIQIPATKVPSFTSGKTLKNAIKQ 91
>gi|160945509|ref|ZP_02092735.1| hypothetical protein FAEPRAM212_03038 [Faecalibacterium prausnitzii
M21/2]
gi|158443240|gb|EDP20245.1| hypothetical protein FAEPRAM212_03038 [Faecalibacterium prausnitzii
M21/2]
Length = 108
Score = 85.6 bits (211), Expect = 2e-15, Method: Composition-based stats.
Identities = 28/90 (31%), Positives = 51/90 (56%), Gaps = 1/90 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI +A +++ + E+ V+ + E + +A+ G ++ I GFG+F VR+RA R
Sbjct: 20 MTKTDLIAQVAANT-EMSKKSAEQAVSAVFEALGKAMTEGEKITISGFGTFEVRERAERQ 78
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
P ++ I++ F+ GK+LK+ L
Sbjct: 79 GINPRTREPITIAASRSIVFKPGKSLKDTL 108
>gi|331000500|ref|ZP_08324173.1| DNA-binding protein HU-alpha [Parasutterella excrementihominis
YIT 11859]
gi|329571488|gb|EGG53172.1| DNA-binding protein HU-alpha [Parasutterella excrementihominis
YIT 11859]
Length = 92
Score = 85.6 bits (211), Expect = 2e-15, Method: Composition-based stats.
Identities = 28/93 (30%), Positives = 51/93 (54%), Gaps = 1/93 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ L+ +A+ + K DV++++ L+ ++ + + +G V + GFG+F KR AR+
Sbjct: 1 MNKTELVTAVAEVSGK-PKADVKEVLEALMGQIIKTVKSGDEVALVGFGTFKSAKREARV 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSP 93
R P + + + P F AGK K+ LN+
Sbjct: 60 GRNPATGAELKIPASIQPKFVAGKLFKDALNTK 92
>gi|126658610|ref|ZP_01729756.1| Histone-like DNA-binding protein [Cyanothece sp. CCY0110]
gi|172036660|ref|YP_001803161.1| DNA binding protein HU [Cyanothece sp. ATCC 51142]
gi|126620047|gb|EAZ90770.1| Histone-like DNA-binding protein [Cyanothece sp. CCY0110]
gi|171698114|gb|ACB51095.1| DNA binding protein HU [Cyanothece sp. ATCC 51142]
Length = 93
Score = 85.6 bits (211), Expect = 2e-15, Method: Composition-based stats.
Identities = 32/90 (35%), Positives = 49/90 (54%), Gaps = 1/90 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K LI +A K ++ + E +++ +E + +A+A +V + GFGSF R R AR
Sbjct: 1 MNKGELIDAVANK-AEVTKKQAETVISATIETIMEAVAGDDKVTLVGFGSFEARDRKARE 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P + +S+ VP F AGK KER+
Sbjct: 60 GRNPKTNEKMSIPATKVPAFSAGKLFKERV 89
>gi|238898611|ref|YP_002924292.1| HU, DNA-binding transcriptional regulator, alpha subunit -3
[Candidatus Hamiltonella defensa 5AT (Acyrthosiphon
pisum)]
gi|229466370|gb|ACQ68144.1| HU, DNA-binding transcriptional regulator, alpha subunit -3
[Candidatus Hamiltonella defensa 5AT (Acyrthosiphon
pisum)]
Length = 114
Score = 85.6 bits (211), Expect = 2e-15, Method: Composition-based stats.
Identities = 30/95 (31%), Positives = 50/95 (52%), Gaps = 1/95 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI IA+ N + ++N++L+ +T++L V++ GFG+F+V+ R AR
Sbjct: 1 MNKAQLIDEIAE-NAGITKIKANTVLNIILDRITESLKKHESVQLVGFGTFNVKHRDARN 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDS 95
AR P + I + VP K LK+ L +
Sbjct: 60 ARNPQTGEPIELPACYVPSLNFAKALKDALKGSED 94
>gi|126726952|ref|ZP_01742791.1| Histone-like DNA-binding protein (IHF) [Rhodobacterales bacterium
HTCC2150]
gi|126703910|gb|EBA03004.1| Histone-like DNA-binding protein (IHF) [Rhodobacterales bacterium
HTCC2150]
Length = 100
Score = 85.6 bits (211), Expect = 2e-15, Method: Composition-based stats.
Identities = 25/89 (28%), Positives = 46/89 (51%), Gaps = 1/89 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
+ L I + L+ + +V +L+ M+ AL +G V+I FG+FS+R + AR+
Sbjct: 7 TRVDLSEAIFNE-VGLSRNESAALVQSVLQHMSDALVSGENVKISSFGTFSLRDKNARVG 65
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P + + + + V FR +K+R+
Sbjct: 66 RNPKTGEEVPISPRRVLTFRPSNLMKDRV 94
>gi|40288405|gb|AAR84227.1| integration host factor alpha subunit [Pantoea stewartii subsp.
stewartii DC283]
Length = 99
Score = 85.6 bits (211), Expect = 2e-15, Method: Composition-based stats.
Identities = 26/96 (27%), Positives = 50/96 (52%), Gaps = 1/96 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ + + +K L+ +D +++V + EE+ +AL NG +V++ GFG+ + + R
Sbjct: 4 TKAEMSEYLFEKL-GLSKRDAKELVELFFEEVCRALENGEQVKLSGFGNSDLCDKNQRPG 62
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDSTL 97
R P + I + + V FR G+ LK R+ +
Sbjct: 63 RNPETGEDIPITARRVVTFRPGQKLKSRVENASPKD 98
>gi|183602609|ref|ZP_02963974.1| DNA-binding protein HB1 [Bifidobacterium animalis subsp. lactis
HN019]
gi|219683651|ref|YP_002470034.1| DNA-binding protein HB1 [Bifidobacterium animalis subsp. lactis
AD011]
gi|241190683|ref|YP_002968077.1| DNA-binding protein HB1 [Bifidobacterium animalis subsp. lactis
Bl-04]
gi|241196089|ref|YP_002969644.1| DNA-binding protein HB1 [Bifidobacterium animalis subsp. lactis
DSM 10140]
gi|183218250|gb|EDT88896.1| DNA-binding protein HB1 [Bifidobacterium animalis subsp. lactis
HN019]
gi|219621301|gb|ACL29458.1| DNA-binding protein HB1 [Bifidobacterium animalis subsp. lactis
AD011]
gi|240249075|gb|ACS46015.1| DNA-binding protein HB1 [Bifidobacterium animalis subsp. lactis
Bl-04]
gi|240250643|gb|ACS47582.1| DNA-binding protein HB1 [Bifidobacterium animalis subsp. lactis
DSM 10140]
gi|289178420|gb|ADC85666.1| DNA-binding protein HU [Bifidobacterium animalis subsp. lactis
BB-12]
gi|295793672|gb|ADG33207.1| DNA-binding protein HB1 [Bifidobacterium animalis subsp. lactis
V9]
Length = 93
Score = 85.6 bits (211), Expect = 2e-15, Method: Composition-based stats.
Identities = 26/89 (29%), Positives = 40/89 (44%), Gaps = 1/89 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
KS L+ I++K+ L E VN + +A+ NG +++ G S KRAAR
Sbjct: 4 NKSDLVAKISQKS-GLTKAQAEAAVNAFRDVFIEAMKNGEGLKLTGLLSAERVKRAARTG 62
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P + I + AG LK+ +
Sbjct: 63 RNPRTGETIEIPATYGVRISAGSLLKKAV 91
>gi|327399206|ref|YP_004340075.1| histone family protein DNA-binding protein [Hippea maritima DSM
10411]
gi|327181835|gb|AEA34016.1| histone family protein DNA-binding protein [Hippea maritima DSM
10411]
Length = 91
Score = 85.2 bits (210), Expect = 2e-15, Method: Composition-based stats.
Identities = 31/92 (33%), Positives = 52/92 (56%), Gaps = 1/92 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI +A+K +K+++ LE + A+A G +V GFG+F V KR+AR+
Sbjct: 1 MTKAELIEKVAEKT-GATKSQTKKVIDAALETIMDAVAAGEKVGFAGFGTFYVSKRSARM 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P + + +E +P F+ G+ KE++N
Sbjct: 60 GRNPRTGEKLQIEAFNLPSFKCGRIFKEKVNK 91
>gi|15888591|ref|NP_354272.1| histone-like protein [Agrobacterium tumefaciens str. C58]
gi|15156311|gb|AAK87057.1| histone-like protein [Agrobacterium tumefaciens str. C58]
Length = 91
Score = 85.2 bits (210), Expect = 2e-15, Method: Composition-based stats.
Identities = 34/92 (36%), Positives = 49/92 (53%), Gaps = 1/92 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ L+ +A+K L D V+ + E + L NGG + + GFGSFSV +R A
Sbjct: 1 MNKNELVSAVAEK-AGLTKADAASAVDAVFETVQGELKNGGDIRLAGFGSFSVSRREASK 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P + + + VP F AGK LK+ +NS
Sbjct: 60 GRNPSTGAEVDIPARNVPKFSAGKGLKDAVNS 91
>gi|294146438|ref|YP_003559104.1| histone-like DNA-binding protein [Sphingobium japonicum UT26S]
gi|292676855|dbj|BAI98372.1| histone-like DNA-binding protein [Sphingobium japonicum UT26S]
Length = 91
Score = 85.2 bits (210), Expect = 2e-15, Method: Composition-based stats.
Identities = 27/91 (29%), Positives = 40/91 (43%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M + L +A + L D K V+ + + A A G V + GFG F V+ + AR
Sbjct: 1 MNNTELAEALAADH-GLTKADARKYVDGVFSAIAGAAAKGEEVSLNGFGKFKVKDQPARE 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P VI + F K +K++LN
Sbjct: 60 GRNPSTGAVIQIAASKKLTFTPAKAVKDQLN 90
>gi|269218721|ref|ZP_06162575.1| DNA-binding protein HU [Actinomyces sp. oral taxon 848 str.
F0332]
gi|269211832|gb|EEZ78172.1| DNA-binding protein HU [Actinomyces sp. oral taxon 848 str.
F0332]
Length = 95
Score = 85.2 bits (210), Expect = 2e-15, Method: Composition-based stats.
Identities = 26/90 (28%), Positives = 43/90 (47%), Gaps = 1/90 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
+ ++ LI IA+K L+ D +K V L + + +L+ G V+I G + +RAAR
Sbjct: 5 INRTELIAKIAEK-ANLSKTDADKAVAALQDVLVDSLSKGEAVKITGLLAVERTERAARK 63
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P + I + AG LK+ +
Sbjct: 64 GRNPRTGEEIQIPAGYGVKLTAGSALKKAV 93
>gi|23009809|ref|ZP_00050720.1| COG0776: Bacterial nucleoid DNA-binding protein [Magnetospirillum
magnetotacticum MS-1]
Length = 99
Score = 85.2 bits (210), Expect = 2e-15, Method: Composition-based stats.
Identities = 29/89 (32%), Positives = 42/89 (47%), Gaps = 1/89 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
KS L+ IA K L+ D EK +N E + ++L G V++ G S +RAAR
Sbjct: 10 NKSELVSAIASK-ADLSKADAEKALNAFQEVLIESLGKGEAVKVTGLLSVERVERAARTG 68
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P + IS+ AG LK+ +
Sbjct: 69 RNPRTGEEISIPAGYGVKISAGSLLKKAV 97
>gi|323136968|ref|ZP_08072048.1| histone family protein DNA-binding protein [Methylocystis sp. ATCC
49242]
gi|322397729|gb|EFY00251.1| histone family protein DNA-binding protein [Methylocystis sp. ATCC
49242]
Length = 179
Score = 85.2 bits (210), Expect = 2e-15, Method: Composition-based stats.
Identities = 25/92 (27%), Positives = 46/92 (50%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
+++L + P L+ + KI++ EE++ AL G V++R FG+F+VR + R+
Sbjct: 82 TRAALREAVYGCCPSLSRAEARKILDATFEEISDALLRGESVKLRSFGTFNVRSKRERVG 141
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLNSP 93
R P ++ + V F+A L +N
Sbjct: 142 RNPKTGVEATITPRRVLTFKASPVLVAHVNGD 173
>gi|153878657|ref|ZP_02004647.1| Integration host factor beta-subunit [Beggiatoa sp. PS]
gi|152064879|gb|EDN65353.1| Integration host factor beta-subunit [Beggiatoa sp. PS]
Length = 73
Score = 85.2 bits (210), Expect = 2e-15, Method: Composition-based stats.
Identities = 31/66 (46%), Positives = 44/66 (66%)
Query: 26 VNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLARAPLAQKVISVEEKMVPFFRAGKN 85
+ +LE+M Q+L NG R+EIRGFGSFS+ R R R P + + + EK VP F+ GK
Sbjct: 1 MKTILEQMAQSLENGERIEIRGFGSFSLHYRPPRKGRNPKTGEPVDLPEKFVPHFKPGKE 60
Query: 86 LKERLN 91
L++R+N
Sbjct: 61 LRDRVN 66
>gi|257091775|ref|YP_003165416.1| histone family protein DNA-binding protein [Candidatus
Accumulibacter phosphatis clade IIA str. UW-1]
gi|257044299|gb|ACV33487.1| histone family protein DNA-binding protein [Candidatus
Accumulibacter phosphatis clade IIA str. UW-1]
Length = 94
Score = 85.2 bits (210), Expect = 2e-15, Method: Composition-based stats.
Identities = 32/94 (34%), Positives = 49/94 (52%), Gaps = 1/94 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI IA ++ +L+ K ++ ++E + ++A G V + GFGSF RA+R
Sbjct: 1 MNKSELIDAIAARS-ELSKAAAAKALDAVIETIVDSVAQGETVTLVGFGSFKASGRASRE 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSPD 94
+ P + I + E VP F AG K R+ D
Sbjct: 60 GKNPKTGEKIHIPETTVPKFSAGATFKARVAGKD 93
>gi|256833715|ref|YP_003162442.1| histone family protein DNA-binding protein [Jonesia denitrificans
DSM 20603]
gi|256687246|gb|ACV10139.1| histone family protein DNA-binding protein [Jonesia denitrificans
DSM 20603]
Length = 93
Score = 85.2 bits (210), Expect = 2e-15, Method: Composition-based stats.
Identities = 24/89 (26%), Positives = 40/89 (44%), Gaps = 1/89 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
+S L+ IA K+ L D + ++ L + + + L+ G V+I G S +R AR
Sbjct: 4 NRSELVSAIAAKS-GLTKTDADAALSALQDVLVEQLSAGEAVKITGLLSVERVERKARTG 62
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P + I + AG LK+ +
Sbjct: 63 RNPRTGEEIEIPAGYGVKISAGSILKKAV 91
>gi|197294415|ref|YP_001798956.1| nucleoid DNA-binding protein [Candidatus Phytoplasma
australiense]
gi|197294469|ref|YP_001799010.1| nucleoid DNA-binding protein [Candidatus Phytoplasma
australiense]
gi|171853742|emb|CAM11665.1| Bacterial nucleoid DNA-binding protein [Candidatus Phytoplasma
australiense]
gi|171853796|emb|CAM11731.1| Bacterial nucleoid DNA-binding protein [Candidatus Phytoplasma
australiense]
Length = 95
Score = 85.2 bits (210), Expect = 2e-15, Method: Composition-based stats.
Identities = 28/91 (30%), Positives = 45/91 (49%), Gaps = 2/91 (2%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALA-NGGRVEIRGFGSFSVRKRAAR 59
M K LI IAK+ ++ E+ N + + +A+A N + G+F++R R AR
Sbjct: 1 MTKKELIRAIAKRQ-NISIVQTEEFYNAFEQVLFEAIAANDEVILSPSIGTFALRHRQAR 59
Query: 60 LARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
L R P + I + EK FR + +KE +
Sbjct: 60 LGRNPQTGEQIEIPEKTAVVFRPSRTIKEEV 90
>gi|254465016|ref|ZP_05078427.1| integration host factor, alpha subunit [Rhodobacterales bacterium
Y4I]
gi|206685924|gb|EDZ46406.1| integration host factor, alpha subunit [Rhodobacterales bacterium
Y4I]
Length = 100
Score = 85.2 bits (210), Expect = 2e-15, Method: Composition-based stats.
Identities = 25/89 (28%), Positives = 50/89 (56%), Gaps = 1/89 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
+ L + ++ L+ + ++V +L+ M+ AL G +V+I FG+FSVR ++AR+
Sbjct: 7 TRMDLSEAVFRE-VGLSRNESAQLVESMLQHMSDALVRGEQVKISSFGTFSVRDKSARVG 65
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P + + ++ + V FR +K+R+
Sbjct: 66 RNPKTGEEVPIQPRRVLTFRPSHLMKDRV 94
>gi|162148812|ref|YP_001603273.1| DNA-binding protein HU [Gluconacetobacter diazotrophicus PAl 5]
gi|209545440|ref|YP_002277669.1| histone family protein DNA-binding protein [Gluconacetobacter
diazotrophicus PAl 5]
gi|161787389|emb|CAP56984.1| DNA-binding protein HU [Gluconacetobacter diazotrophicus PAl 5]
gi|209533117|gb|ACI53054.1| histone family protein DNA-binding protein [Gluconacetobacter
diazotrophicus PAl 5]
Length = 94
Score = 85.2 bits (210), Expect = 3e-15, Method: Composition-based stats.
Identities = 24/89 (26%), Positives = 40/89 (44%), Gaps = 1/89 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K L+ +A + L ++V+ + + +AL+ V + GFG+F R A
Sbjct: 6 NKQELVAAVAD-DADLPKAKAGEVVDAVFSAIEKALSKKQEVRLVGFGTFVTATRKAAKG 64
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P + I + F+ GKNLKE +
Sbjct: 65 RNPRTGEEIDIPASTSVRFKPGKNLKEAV 93
>gi|332290335|ref|YP_004421187.1| integration host factor subunit alpha [Gallibacterium anatis
UMN179]
gi|330433231|gb|AEC18290.1| integration host factor subunit alpha [Gallibacterium anatis
UMN179]
Length = 98
Score = 85.2 bits (210), Expect = 3e-15, Method: Composition-based stats.
Identities = 28/96 (29%), Positives = 48/96 (50%), Gaps = 1/96 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K L + +K LN D +++V EE+ QAL +G V++ GFG+F +R + R
Sbjct: 4 TKVELAENLIEKF-NLNKNDAKELVESFFEEIRQALESGEEVKLSGFGNFELRDKTPRPG 62
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDSTL 97
R P + + + + V F+AG+ L+ R+
Sbjct: 63 RNPKTGEYVPITARRVVVFKAGQKLRARVEKSKPKD 98
>gi|239982533|ref|ZP_04705057.1| putative histone-like DNA-binding protein [Streptomyces albus
J1074]
gi|291454376|ref|ZP_06593766.1| histone-like DNA binding protein [Streptomyces albus J1074]
gi|291357325|gb|EFE84227.1| histone-like DNA binding protein [Streptomyces albus J1074]
Length = 217
Score = 85.2 bits (210), Expect = 3e-15, Method: Composition-based stats.
Identities = 35/100 (35%), Positives = 53/100 (53%), Gaps = 3/100 (3%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ L+ IA K Q+ + V+ +L+ M +A+ G RV + GFGSF R AR
Sbjct: 1 MNKAQLVEAIADKVGG--RQNAAEAVDAVLDAMVRAVVAGERVSVTGFGSFEKVDRPARY 58
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDSTLSNS 100
AR P + + V++ VP FRAG+ K+ + S L +
Sbjct: 59 ARNPQTGERVRVKKTSVPRFRAGQGFKDLV-SGTKKLPKN 97
>gi|239814882|ref|YP_002943792.1| histone family protein DNA-binding protein [Variovorax paradoxus
S110]
gi|239801459|gb|ACS18526.1| histone family protein DNA-binding protein [Variovorax paradoxus
S110]
Length = 123
Score = 85.2 bits (210), Expect = 3e-15, Method: Composition-based stats.
Identities = 26/89 (29%), Positives = 46/89 (51%), Gaps = 1/89 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ L + ++ LN ++ + +V + + +L G V+I GFG+F +R +A R
Sbjct: 17 TKAHLADLLFEQI-GLNKRESKDMVEAFFDLIANSLIEGTDVKISGFGNFQIRVKAPRPG 75
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P + I + E+ V F A LKE++
Sbjct: 76 RNPRTGEAIPIGERRVATFHASAKLKEQI 104
>gi|118475521|ref|YP_892021.1| DNA-binding protein HU [Campylobacter fetus subsp. fetus 82-40]
gi|118414747|gb|ABK83167.1| DNA-binding protein HU [Campylobacter fetus subsp. fetus 82-40]
Length = 104
Score = 85.2 bits (210), Expect = 3e-15, Method: Composition-based stats.
Identities = 33/90 (36%), Positives = 48/90 (53%), Gaps = 1/90 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ +G +A K L +D E ++ L +++ L G V GFG+F V +RAAR
Sbjct: 1 MTKAEFVGLVASK-AGLTKKDTELALDGFLGSISEVLTKGDSVTFVGFGTFGVTERAART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
A+ P K I V K F+ GKNLK+ +
Sbjct: 60 AKVPSTGKEIKVPAKKAVKFKVGKNLKDAV 89
>gi|301156331|emb|CBW15802.1| integration host factor (IHF), DNA-binding protein, alpha subunit
[Haemophilus parainfluenzae T3T1]
Length = 99
Score = 85.2 bits (210), Expect = 3e-15, Method: Composition-based stats.
Identities = 26/96 (27%), Positives = 49/96 (51%), Gaps = 1/96 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
+ K + + K +L + + +V EE+ +L +GG V++ GFG+F +R +A+R
Sbjct: 4 ITKIDITEYLLDKY-QLQKAEAKALVEDFFEEIRLSLESGGEVKLSGFGNFELRNKASRP 62
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDST 96
R P + I V + V F+ G+ L+ R+ +
Sbjct: 63 GRNPKTGESIPVSARRVVAFKPGQKLRARVENTKPK 98
>gi|23335497|ref|ZP_00120732.1| COG0776: Bacterial nucleoid DNA-binding protein [Bifidobacterium
longum DJO10A]
gi|23466342|ref|NP_696945.1| DNA-binding protein HU [Bifidobacterium longum NCC2705]
gi|189440838|ref|YP_001955919.1| nucleoid DNA-binding protein [Bifidobacterium longum DJO10A]
gi|213691575|ref|YP_002322161.1| histone family protein DNA-binding protein [Bifidobacterium
longum subsp. infantis ATCC 15697]
gi|227546710|ref|ZP_03976759.1| DNA-binding protein HU [Bifidobacterium longum subsp. infantis
ATCC 55813]
gi|239620686|ref|ZP_04663717.1| DNA-binding protein Hu [Bifidobacterium longum subsp. infantis
CCUG 52486]
gi|296454624|ref|YP_003661767.1| histone family protein DNA-binding protein [Bifidobacterium
longum subsp. longum JDM301]
gi|312132302|ref|YP_003999641.1| hima [Bifidobacterium longum subsp. longum BBMN68]
gi|317481730|ref|ZP_07940762.1| bacterial DNA-binding protein [Bifidobacterium sp. 12_1_47BFAA]
gi|322689691|ref|YP_004209425.1| DNA-binding protein [Bifidobacterium longum subsp. infantis 157F]
gi|322691653|ref|YP_004221223.1| DNA-binding protein [Bifidobacterium longum subsp. longum JCM
1217]
gi|24212656|sp|P17615|DBH1_BIFLO RecName: Full=DNA-binding protein HB1
gi|23327099|gb|AAN25581.1| DNA-binding protein Hu [Bifidobacterium longum NCC2705]
gi|189429273|gb|ACD99421.1| Bacterial nucleoid DNA-binding protein [Bifidobacterium longum
DJO10A]
gi|213523036|gb|ACJ51783.1| histone family protein DNA-binding protein [Bifidobacterium
longum subsp. infantis ATCC 15697]
gi|227212672|gb|EEI80553.1| DNA-binding protein HU [Bifidobacterium longum subsp. infantis
ATCC 55813]
gi|239516262|gb|EEQ56129.1| DNA-binding protein Hu [Bifidobacterium longum subsp. infantis
CCUG 52486]
gi|291516247|emb|CBK69863.1| Bacterial nucleoid DNA-binding protein [Bifidobacterium longum
subsp. longum F8]
gi|296184055|gb|ADH00937.1| histone family protein DNA-binding protein [Bifidobacterium
longum subsp. longum JDM301]
gi|311773444|gb|ADQ02932.1| HimA [Bifidobacterium longum subsp. longum BBMN68]
gi|316916844|gb|EFV38234.1| bacterial DNA-binding protein [Bifidobacterium sp. 12_1_47BFAA]
gi|320456509|dbj|BAJ67131.1| DNA-binding protein [Bifidobacterium longum subsp. longum JCM
1217]
gi|320457663|dbj|BAJ68284.1| DNA-binding protein [Bifidobacterium longum subsp. infantis ATCC
15697]
gi|320461027|dbj|BAJ71647.1| DNA-binding protein [Bifidobacterium longum subsp. infantis 157F]
Length = 93
Score = 85.2 bits (210), Expect = 3e-15, Method: Composition-based stats.
Identities = 26/89 (29%), Positives = 40/89 (44%), Gaps = 1/89 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
KS L+ IA+K+ L E VN + +A+ +G +++ G S KRAAR
Sbjct: 4 NKSDLVSKIAQKS-NLTKAQAEAAVNAFQDVFVEAMKSGEGLKLTGLFSAERVKRAARTG 62
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P + I + AG LK+ +
Sbjct: 63 RNPRTGEQIDIPASYGVRISAGSLLKKAV 91
>gi|331001163|ref|ZP_08324791.1| DNA-binding protein HU-alpha [Parasutterella excrementihominis
YIT 11859]
gi|329569251|gb|EGG51040.1| DNA-binding protein HU-alpha [Parasutterella excrementihominis
YIT 11859]
Length = 92
Score = 85.2 bits (210), Expect = 3e-15, Method: Composition-based stats.
Identities = 30/93 (32%), Positives = 52/93 (55%), Gaps = 1/93 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ L+ T+A+ + K DV++++ LL ++ + + +G V + GFG+F KR AR+
Sbjct: 1 MNKTELVATVAEVSGK-PKADVKEVLEALLGQIIKTVKSGDEVTLVGFGTFKSAKREARV 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSP 93
R P + + + P F AGK K+ LN+
Sbjct: 60 GRNPATGAELKIPASIQPKFVAGKLFKDALNTK 92
>gi|294631600|ref|ZP_06710160.1| DNA-binding protein HU [Streptomyces sp. e14]
gi|292834933|gb|EFF93282.1| DNA-binding protein HU [Streptomyces sp. e14]
Length = 212
Score = 85.2 bits (210), Expect = 3e-15, Method: Composition-based stats.
Identities = 32/95 (33%), Positives = 49/95 (51%), Gaps = 2/95 (2%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ L+ IA K Q V+ +L+ + +A+ G RV + GFGSF R AR
Sbjct: 1 MNKAQLVEAIADKMGG--RQQAADAVDAVLDAIVRAVVGGDRVSVTGFGSFEKVDRPARY 58
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDS 95
AR P + + V++ VP FRAG+ K+ ++
Sbjct: 59 ARNPQTGERVRVKKTSVPRFRAGQGFKDLVSGSKK 93
>gi|282599288|ref|YP_003358600.1| putative DNA-binding protein [Shigella phage phiSboM-AG3]
gi|226973594|gb|ACO94347.1| putative DNA-binding protein [Shigella phage phiSboM-AG3]
Length = 92
Score = 85.2 bits (210), Expect = 3e-15, Method: Composition-based stats.
Identities = 29/93 (31%), Positives = 48/93 (51%), Gaps = 1/93 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M ++ + IA + + EK+V ++ + A+A G V++ GFG+F V+ + AR
Sbjct: 1 MNRTEFVAHIA-STQNITKGEAEKVVASFIDGVKTAVAAGASVQLVGFGAFEVKHQEARE 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSP 93
R PL + I +E K V F+ G+ LK N
Sbjct: 60 GRNPLNGQTIQIEAKNVVKFKVGEGLKNAANGK 92
>gi|24373428|ref|NP_717471.1| HU family DNA-binding protein [Shewanella oneidensis MR-1]
gi|24347706|gb|AAN54915.1|AE015629_9 DNA-binding protein, HU family [Shewanella oneidensis MR-1]
Length = 91
Score = 85.2 bits (210), Expect = 3e-15, Method: Composition-based stats.
Identities = 25/92 (27%), Positives = 45/92 (48%), Gaps = 1/92 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI IA + + + +V +L+++ AL+ G +V + FG+F +R +
Sbjct: 1 MNKAQLIQRIATSLEQ-SQASTKPVVEQILQQIHIALSEGEKVFLPLFGTFELRYHLPKS 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P + I + P F+A LK+ +N
Sbjct: 60 GRNPQTGEAIEIAGFNQPSFKAATALKQAINE 91
>gi|329936537|ref|ZP_08286273.1| DNA-binding protein HU1/hs1 [Streptomyces griseoaurantiacus M045]
gi|329304052|gb|EGG47934.1| DNA-binding protein HU1/hs1 [Streptomyces griseoaurantiacus M045]
Length = 93
Score = 85.2 bits (210), Expect = 3e-15, Method: Composition-based stats.
Identities = 26/90 (28%), Positives = 42/90 (46%), Gaps = 2/90 (2%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGG-RVEIRGFGSFSVRKRAAR 59
M +S L+ +A + ++ +D + ++ E + + +A G +V I GF +F RAAR
Sbjct: 1 MNRSELVAALADR-AEVTRKDADAVLAAFAETVGEIVAKGDEKVTIPGFLTFERTHRAAR 59
Query: 60 LARAPLAQKVISVEEKMVPFFRAGKNLKER 89
AR P I + AG LKE
Sbjct: 60 TARNPQTGDPIQIPAGYSVKVSAGSKLKEA 89
>gi|223039759|ref|ZP_03610044.1| DNA-binding protein HU 1 (DNA-binding protein II) (HB)
[Campylobacter rectus RM3267]
gi|222878951|gb|EEF14047.1| DNA-binding protein HU 1 (DNA-binding protein II) (HB)
[Campylobacter rectus RM3267]
Length = 100
Score = 85.2 bits (210), Expect = 3e-15, Method: Composition-based stats.
Identities = 36/90 (40%), Positives = 48/90 (53%), Gaps = 1/90 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ I +A+K L+ +D K+V+ LE + AL G V GFG+F RAAR
Sbjct: 1 MKKADFIQAVAEK-AGLSKKDSLKVVDAALEVIESALVAGDSVSFIGFGTFGTADRAARK 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
AR P +KVI V F+ GK LKE +
Sbjct: 60 ARVPGTKKVIDVPASKAVKFKVGKKLKEAV 89
>gi|84498266|ref|ZP_00997063.1| DNA-binding protein HU [Janibacter sp. HTCC2649]
gi|84381766|gb|EAP97649.1| DNA-binding protein HU [Janibacter sp. HTCC2649]
Length = 92
Score = 85.2 bits (210), Expect = 3e-15, Method: Composition-based stats.
Identities = 26/90 (28%), Positives = 46/90 (51%), Gaps = 1/90 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M ++ L + K +L+ D ++ ++ +L +T AL G +V + GFG F R+RAAR
Sbjct: 1 MNRTDLKNKVVDK-AELSGADADRAIDAVLGAITDALVAGDKVSLPGFGIFETRERAART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P + + ++ F+ LK +L
Sbjct: 60 GRNPQTGEALEIKASTAAAFKPAAELKRKL 89
>gi|320354295|ref|YP_004195634.1| histone family protein DNA-binding protein [Desulfobulbus
propionicus DSM 2032]
gi|320122797|gb|ADW18343.1| histone family protein DNA-binding protein [Desulfobulbus
propionicus DSM 2032]
Length = 95
Score = 85.2 bits (210), Expect = 3e-15, Method: Composition-based stats.
Identities = 22/92 (23%), Positives = 43/92 (46%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ L+ + K +P L + V L +L G + + GFG F+++ + +R
Sbjct: 4 TKADLVQQVYKTHPNLTKSQSTESVETFLALSKSSLITGEDLLLSGFGKFNIKDKKSRRG 63
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLNSP 93
R P ++++ + V F+ L+ R+NS
Sbjct: 64 RNPQTGNELTLDARRVVTFKPSGILRSRINSD 95
>gi|85703262|ref|ZP_01034366.1| integration host factor, alpha subunit [Roseovarius sp. 217]
gi|85672190|gb|EAQ27047.1| integration host factor, alpha subunit [Roseovarius sp. 217]
Length = 121
Score = 85.2 bits (210), Expect = 3e-15, Method: Composition-based stats.
Identities = 26/89 (29%), Positives = 48/89 (53%), Gaps = 1/89 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
+ L + ++ L+ D ++V +L+ M+ AL G +V+I FG+FSVR + AR+
Sbjct: 28 TRMDLSEAVFRE-VGLSRNDAAQLVESVLDHMSDALVRGEQVKISSFGTFSVRDKTARVG 86
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P + + + + V FR +K+R+
Sbjct: 87 RNPKTGEEVPINPRRVLTFRPSHLMKDRV 115
>gi|195953425|ref|YP_002121715.1| histone family protein DNA-binding protein [Hydrogenobaculum sp.
Y04AAS1]
gi|195933037|gb|ACG57737.1| histone family protein DNA-binding protein [Hydrogenobaculum sp.
Y04AAS1]
Length = 89
Score = 85.2 bits (210), Expect = 3e-15, Method: Composition-based stats.
Identities = 26/88 (29%), Positives = 43/88 (48%), Gaps = 1/88 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ L+ +A++ + EK VN + + ++L R I GFG+F+V R AR
Sbjct: 1 MTKTELVSYVAQQ-ADITKAKAEKCVNAVFSALAESLKKKERTTIPGFGTFTVSTRKART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKE 88
R P + I + + +R K LK+
Sbjct: 60 GRNPKTGQEIKIPARTTAVWRPSKELKK 87
>gi|121610039|ref|YP_997846.1| integration host factor subunit alpha [Verminephrobacter eiseniae
EF01-2]
gi|121554679|gb|ABM58828.1| histone family protein DNA-binding protein [Verminephrobacter
eiseniae EF01-2]
Length = 108
Score = 85.2 bits (210), Expect = 3e-15, Method: Composition-based stats.
Identities = 24/89 (26%), Positives = 49/89 (55%), Gaps = 1/89 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ L + + LN ++ + +++ + + + Q+L +G V++ GFG+F +R +A R
Sbjct: 15 TKAQLAELLFDQI-GLNKRESKDMIDAVFDLIAQSLVDGKDVKLSGFGNFQIRTKAPRPG 73
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P + I ++ + V F A LKE++
Sbjct: 74 RNPRTGEAIPIQARRVVIFHASSKLKEQI 102
>gi|319776256|ref|YP_004138744.1| integration host factor (IHF), DNA-binding protein subunit alpha
[Haemophilus influenzae F3047]
gi|329123395|ref|ZP_08251959.1| integration host factor subunit alpha [Haemophilus aegyptius ATCC
11116]
gi|317450847|emb|CBY87071.1| integration host factor (IHF), DNA-binding protein, alpha subunit
[Haemophilus influenzae F3047]
gi|327470977|gb|EGF16432.1| integration host factor subunit alpha [Haemophilus aegyptius ATCC
11116]
Length = 96
Score = 85.2 bits (210), Expect = 3e-15, Method: Composition-based stats.
Identities = 27/94 (28%), Positives = 51/94 (54%), Gaps = 1/94 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
+ K ++ ++ K L+ QD + +V LEE+ +L +G V++ GFG+F +R +++R
Sbjct: 4 ITKIDIVEYLSDKY-HLSKQDTKNVVENFLEEIRLSLESGQDVKLSGFGNFELRDKSSRP 62
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSPD 94
R P V+ V + V F+ G+ L+ R+
Sbjct: 63 GRNPKTGDVVPVSARRVVAFKPGQKLRARVEKTK 96
>gi|295690480|ref|YP_003594173.1| histone family protein DNA-binding protein [Caulobacter segnis
ATCC 21756]
gi|295432383|gb|ADG11555.1| histone family protein DNA-binding protein [Caulobacter segnis
ATCC 21756]
Length = 92
Score = 85.2 bits (210), Expect = 3e-15, Method: Composition-based stats.
Identities = 25/91 (27%), Positives = 39/91 (42%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M S L+ + KL + I++ + + ++ A G V I GFG F V+ + AR
Sbjct: 1 MNVSDLVDAAVAADDKLTKTQAKAIIDGVFKSISDAAVKGDEVSIPGFGKFKVQAKPART 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P I + F K LK+ +N
Sbjct: 61 GRNPATGATIEIAASKKVAFTPAKQLKDAVN 91
>gi|11467715|ref|NP_050767.1| DNA-binding protein hu homolog [Guillardia theta]
gi|118265|sp|P29214|DBH_GUITH RecName: Full=DNA-binding protein HU homolog; AltName:
Full=Histone-like protein
gi|99344|pir||B41609 hlpA protein - Cryptomonas sp. chloroplast (strain Phi)
gi|3603040|gb|AAC35701.1| DNA-binding protein hu homolog [Guillardia theta]
Length = 93
Score = 85.2 bits (210), Expect = 3e-15, Method: Composition-based stats.
Identities = 32/92 (34%), Positives = 48/92 (52%), Gaps = 1/92 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI IA K + D+EKI+ +LE + +A G +V + GFGSF R+R AR
Sbjct: 1 MNKSQLISKIAY-YTKYSKTDIEKIITSMLEIIVDTVATGEKVTLVGFGSFEARERKARE 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P + + + +P F G + ++N
Sbjct: 60 GRNPRTGEKLFLPASRIPTFSVGNFFRNKVNK 91
>gi|144899188|emb|CAM76052.1| Histone-like bacterial DNA-binding protein [Magnetospirillum
gryphiswaldense MSR-1]
Length = 104
Score = 85.2 bits (210), Expect = 3e-15, Method: Composition-based stats.
Identities = 26/91 (28%), Positives = 51/91 (56%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
+ ++ L + ++ L+ + ++ +LEE+ +ALA G V+I FGSF+VR + R+
Sbjct: 6 ITRAQLSEAVYQE-VGLSRNESSDLLEAVLEEVAEALAQGEAVKISSFGSFAVRSKGQRI 64
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + + + + V FR + LK+++N
Sbjct: 65 GRNPKTGEEVPILPRRVLVFRPSQLLKKKIN 95
>gi|54026181|ref|YP_120423.1| putative histone-like DNA-binding protein [Nocardia farcinica IFM
10152]
gi|54017689|dbj|BAD59059.1| putative histone-like DNA-binding protein [Nocardia farcinica IFM
10152]
Length = 232
Score = 85.2 bits (210), Expect = 3e-15, Method: Composition-based stats.
Identities = 30/100 (30%), Positives = 49/100 (49%), Gaps = 2/100 (2%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI + +K + + V +++ + +A+ G V I GFG F RKRA R+
Sbjct: 1 MNKAELIDVLTEKL-GTDRRTATAAVEHVVDTIVRAVHKGQSVTITGFGVFEQRKRAPRV 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDSTLSNS 100
AR P + + V+ VP FR G K + + L+ +
Sbjct: 60 ARNPRTGETVKVKATSVPAFRPGAQFKAVI-AGKQKLAAT 98
>gi|85858504|ref|YP_460706.1| DNA-binding protein HU [Syntrophus aciditrophicus SB]
gi|85721595|gb|ABC76538.1| DNA-binding protein HU [Syntrophus aciditrophicus SB]
Length = 91
Score = 84.8 bits (209), Expect = 3e-15, Method: Composition-based stats.
Identities = 25/91 (27%), Positives = 51/91 (56%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K +I + +K + +D +IV + + + ++L G +++I GFG+F V+++ +R
Sbjct: 1 MTKIDIIQDVYEKL-GFSKKDSARIVESVFDIIKESLGRGEKIKISGFGNFVVKEKKSRR 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P IS+ + V F++ + L++ LN
Sbjct: 60 GRNPQTGDEISISARRVLTFKSSQVLRKALN 90
>gi|224282721|ref|ZP_03646043.1| DNA-binding protein HB1 [Bifidobacterium bifidum NCIMB 41171]
gi|310287180|ref|YP_003938438.1| DNA-binding protein HU [Bifidobacterium bifidum S17]
gi|311064042|ref|YP_003970767.1| DNA-binding protein [Bifidobacterium bifidum PRL2010]
gi|313139879|ref|ZP_07802072.1| DNA-binding protein HB1 [Bifidobacterium bifidum NCIMB 41171]
gi|309251116|gb|ADO52864.1| DNA-binding protein HU [Bifidobacterium bifidum S17]
gi|310866361|gb|ADP35730.1| DNA-binding protein [Bifidobacterium bifidum PRL2010]
gi|313132389|gb|EFR50006.1| DNA-binding protein HB1 [Bifidobacterium bifidum NCIMB 41171]
Length = 93
Score = 84.8 bits (209), Expect = 3e-15, Method: Composition-based stats.
Identities = 26/89 (29%), Positives = 41/89 (46%), Gaps = 1/89 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
KS L+ IA+K+ L E VN + +A+ +G +++ G S KRAAR
Sbjct: 4 NKSDLVSKIAQKS-NLTKAQAEAAVNAFQDVFVEAMQSGEGLKLTGLFSAERVKRAARTG 62
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P ++I + AG LK+ +
Sbjct: 63 RNPRTGEIIEIPATYGVRISAGSLLKKAV 91
>gi|61222639|sp|P0A3H3|DBH1_RHILE RecName: Full=DNA-binding protein HRL18
gi|61222641|sp|P0A3H4|DBH1_AGRTU RecName: Full=DNA-binding protein HRL18
Length = 91
Score = 84.8 bits (209), Expect = 3e-15, Method: Composition-based stats.
Identities = 34/92 (36%), Positives = 49/92 (53%), Gaps = 1/92 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ L+ +A+K L D V+ + E + L NGG + + GFGSFSV +R A
Sbjct: 1 MNKNELVSAVAEK-AGLTKADAASAVDAVFETVQSELKNGGDIRLAGFGSFSVSRREASK 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P + + + VP F AGK LK+ +NS
Sbjct: 60 GRNPSTGAEVDIPARNVPKFSAGKGLKDAVNS 91
>gi|325292629|ref|YP_004278493.1| histone-like protein [Agrobacterium sp. H13-3]
gi|325060482|gb|ADY64173.1| histone-like protein [Agrobacterium sp. H13-3]
Length = 91
Score = 84.8 bits (209), Expect = 3e-15, Method: Composition-based stats.
Identities = 33/92 (35%), Positives = 49/92 (53%), Gaps = 1/92 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ L+ +A+K L D V+ + E + L +GG + + GFGSFSV +R A
Sbjct: 1 MNKNELVSAVAEK-AGLTKADAASAVDAVFETVQNELKSGGDIRLAGFGSFSVSRREASK 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P + + + VP F AGK LK+ +NS
Sbjct: 60 GRNPSTGAEVDIPARNVPKFSAGKGLKDAVNS 91
>gi|259419005|ref|ZP_05742922.1| integration host factor, alpha subunit [Silicibacter sp. TrichCH4B]
gi|259345227|gb|EEW57081.1| integration host factor, alpha subunit [Silicibacter sp. TrichCH4B]
Length = 109
Score = 84.8 bits (209), Expect = 3e-15, Method: Composition-based stats.
Identities = 25/90 (27%), Positives = 51/90 (56%), Gaps = 1/90 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
+ + L + ++ L+ + ++V +L+ M+ AL G +V+I FG+FSVR ++AR+
Sbjct: 15 ITRMDLSEAVFRE-VGLSRNESAQLVESMLQHMSDALVRGEQVKISSFGTFSVRDKSARV 73
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P + + ++ + V FR +K+R+
Sbjct: 74 GRNPKTGEEVPIQPRRVLTFRPSHLMKDRV 103
>gi|37520401|ref|NP_923778.1| DNA binding protein HU [Gloeobacter violaceus PCC 7421]
gi|35211394|dbj|BAC88773.1| DNA binding protein HU [Gloeobacter violaceus PCC 7421]
Length = 94
Score = 84.8 bits (209), Expect = 3e-15, Method: Composition-based stats.
Identities = 28/95 (29%), Positives = 52/95 (54%), Gaps = 3/95 (3%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K L+ +A++ K+ ++ + +++ + +E+ +A G +V + GFG+F RKRA R
Sbjct: 1 MNKGELVKAVAERT-KITLKEADAVISAVFDEIQDTVAGGEKVTLVGFGTFEARKRAERE 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL--NSP 93
R P + + + + P F AGK KE + N+
Sbjct: 60 GRNPKTNEKMIIPATVAPAFSAGKTFKEAVLTNNK 94
>gi|302554387|ref|ZP_07306729.1| histone protein DNA-binding protein [Streptomyces
viridochromogenes DSM 40736]
gi|302472005|gb|EFL35098.1| histone protein DNA-binding protein [Streptomyces
viridochromogenes DSM 40736]
Length = 214
Score = 84.8 bits (209), Expect = 3e-15, Method: Composition-based stats.
Identities = 31/95 (32%), Positives = 50/95 (52%), Gaps = 2/95 (2%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ L+ IA K Q V+ +L+ + +++ +G RV + GFGSF R AR
Sbjct: 1 MNKAQLVEAIADKMGG--RQQAADAVDHVLDAIVRSVVSGERVSVTGFGSFEKVDRPARY 58
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDS 95
AR P + + V++ VP FRAG+ K+ ++
Sbjct: 59 ARNPQTGERVRVKKTSVPRFRAGQGFKDLVSGSKK 93
>gi|313828230|gb|EFS65944.1| DNA-binding protein HU [Propionibacterium acnes HL063PA2]
gi|314914530|gb|EFS78361.1| DNA-binding protein HU [Propionibacterium acnes HL005PA4]
Length = 91
Score = 84.8 bits (209), Expect = 3e-15, Method: Composition-based stats.
Identities = 26/90 (28%), Positives = 41/90 (45%), Gaps = 1/90 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI T+A K L + V L + +T ALA G +V++ G + +R AR
Sbjct: 1 MTKSELIKTVA-KQASLTEAQTNEAVKALPDVITAALAKGEKVQLPGLFTAETVERPARN 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P + +++ A LK+ +
Sbjct: 60 GRNPRTGESMTIPAHKAVKISASSTLKKAV 89
>gi|332759234|gb|EGJ89543.1| integration host factor, alpha subunit [Shigella flexneri K-671]
Length = 92
Score = 84.8 bits (209), Expect = 3e-15, Method: Composition-based stats.
Identities = 26/82 (31%), Positives = 46/82 (56%)
Query: 16 KLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLARAPLAQKVISVEEK 75
L+ +D +++V + EE+ +AL NG +V++ GFG+F +R + R R P + I + +
Sbjct: 10 GLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPGRNPKTGEDIPITAR 69
Query: 76 MVPFFRAGKNLKERLNSPDSTL 97
V FR G+ LK R+ +
Sbjct: 70 RVVTFRPGQKLKSRVENASPKD 91
>gi|311898514|dbj|BAJ30922.1| putative DNA-binding protein Hu [Kitasatospora setae KM-6054]
Length = 226
Score = 84.8 bits (209), Expect = 3e-15, Method: Composition-based stats.
Identities = 28/95 (29%), Positives = 52/95 (54%), Gaps = 2/95 (2%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ L+ +A++ + + V+ +L+ M +A+ G RV + GFG+F +R+AR
Sbjct: 1 MNKAQLVEAVAEQLGG--RKAAAEAVDAVLDTMVRAVVAGDRVSVTGFGTFEKVERSARF 58
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDS 95
AR P + + V++ VP FR G+ K+ ++
Sbjct: 59 ARNPQTGERVKVKKTAVPRFRPGQGFKDLVSGSKK 93
>gi|39996621|ref|NP_952572.1| integration host factor subunit alpha [Geobacter sulfurreducens
PCA]
gi|39983502|gb|AAR34895.1| integration host factor, alpha subunit [Geobacter sulfurreducens
PCA]
gi|298505634|gb|ADI84357.1| integration host factor, alpha subunit [Geobacter sulfurreducens
KN400]
Length = 91
Score = 84.8 bits (209), Expect = 3e-15, Method: Composition-based stats.
Identities = 22/91 (24%), Positives = 46/91 (50%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ ++ I +K + ++ ++V + + + L G +++I GFG+F V+ +A R
Sbjct: 1 MTKADIVEQIYEKI-GFSKKESAELVERVFGLIKETLERGEKIKIAGFGNFVVKDKADRR 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P I + + + F+ + LK +N
Sbjct: 60 GRNPQTGDEIIISARKILTFKPSQVLKSSIN 90
>gi|163739611|ref|ZP_02147020.1| integration host factor, alpha subunit [Phaeobacter gallaeciensis
BS107]
gi|161387070|gb|EDQ11430.1| integration host factor, alpha subunit [Phaeobacter gallaeciensis
BS107]
Length = 100
Score = 84.8 bits (209), Expect = 3e-15, Method: Composition-based stats.
Identities = 26/89 (29%), Positives = 50/89 (56%), Gaps = 1/89 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
+ L + ++ L+ + ++V LL+ M+ AL G +V+I FG+FSVR ++AR+
Sbjct: 7 TRMDLSEAVFRE-VGLSRNESAQLVESLLQHMSDALVRGEQVKISSFGTFSVRDKSARVG 65
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P + + ++ + V FR +K+R+
Sbjct: 66 RNPKTGEEVPIQPRRVLTFRPSHLMKDRV 94
>gi|160884102|ref|ZP_02065105.1| hypothetical protein BACOVA_02078 [Bacteroides ovatus ATCC 8483]
gi|237717231|ref|ZP_04547712.1| DNA-binding protein HU-beta [Bacteroides sp. D1]
gi|237718986|ref|ZP_04549467.1| DNA-binding protein HU-beta [Bacteroides sp. 2_2_4]
gi|260173110|ref|ZP_05759522.1| DNA-binding protein HU-beta [Bacteroides sp. D2]
gi|262405998|ref|ZP_06082548.1| integration host factor, beta subunit [Bacteroides sp. 2_1_22]
gi|293368714|ref|ZP_06615319.1| DNA-binding protein HU [Bacteroides ovatus SD CMC 3f]
gi|294647974|ref|ZP_06725525.1| DNA-binding protein HU [Bacteroides ovatus SD CC 2a]
gi|294806912|ref|ZP_06765737.1| DNA-binding protein HU [Bacteroides xylanisolvens SD CC 1b]
gi|298480088|ref|ZP_06998287.1| DNA-binding protein HU [Bacteroides sp. D22]
gi|299144759|ref|ZP_07037827.1| DNA-binding protein HU [Bacteroides sp. 3_1_23]
gi|315921386|ref|ZP_07917626.1| DNA-binding protein HU-beta [Bacteroides sp. D2]
gi|156110444|gb|EDO12189.1| hypothetical protein BACOVA_02078 [Bacteroides ovatus ATCC 8483]
gi|229443214|gb|EEO49005.1| DNA-binding protein HU-beta [Bacteroides sp. D1]
gi|229451764|gb|EEO57555.1| DNA-binding protein HU-beta [Bacteroides sp. 2_2_4]
gi|262356873|gb|EEZ05963.1| integration host factor, beta subunit [Bacteroides sp. 2_1_22]
gi|292636179|gb|EFF54666.1| DNA-binding protein HU [Bacteroides ovatus SD CMC 3f]
gi|292636690|gb|EFF55157.1| DNA-binding protein HU [Bacteroides ovatus SD CC 2a]
gi|294445941|gb|EFG14583.1| DNA-binding protein HU [Bacteroides xylanisolvens SD CC 1b]
gi|295085555|emb|CBK67078.1| bacterial nucleoid protein Hbs [Bacteroides xylanisolvens XB1A]
gi|298273897|gb|EFI15459.1| DNA-binding protein HU [Bacteroides sp. D22]
gi|298515250|gb|EFI39131.1| DNA-binding protein HU [Bacteroides sp. 3_1_23]
gi|313695261|gb|EFS32096.1| DNA-binding protein HU-beta [Bacteroides sp. D2]
Length = 90
Score = 84.8 bits (209), Expect = 3e-15, Method: Composition-based stats.
Identities = 29/90 (32%), Positives = 49/90 (54%), Gaps = 1/90 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI +A + +++ D +K ++ + +T A+ G +V + GFG+FSV +RA R
Sbjct: 1 MNKSDLISAMAAE-AQMSKADAKKALDAFITSVTNAMKAGDKVSLVGFGTFSVSERAERT 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
P + I++ K V F+AG L +
Sbjct: 60 GINPSTKATITIPAKKVAKFKAGAELSAAV 89
>gi|271969217|ref|YP_003343413.1| histone-like DNA-binding protein [Streptosporangium roseum DSM
43021]
gi|270512392|gb|ACZ90670.1| histone-like DNA-binding protein [Streptosporangium roseum DSM
43021]
Length = 99
Score = 84.8 bits (209), Expect = 3e-15, Method: Composition-based stats.
Identities = 32/99 (32%), Positives = 49/99 (49%), Gaps = 2/99 (2%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K L+ IA + + + VN +L+ + +A+A+G +V I GFG+F + + AR
Sbjct: 1 MNKKELVDAIADRVGD--KKTATEAVNAVLDAIQKAVASGDKVSITGFGAFEMVHKPART 58
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDSTLSN 99
AR P I V E P FR G + KE +N +
Sbjct: 59 ARNPSTGAEIKVAESWGPKFRPGSDFKELVNVEGKKAAK 97
>gi|84516338|ref|ZP_01003698.1| Histone-like DNA-binding protein (IHF) [Loktanella vestfoldensis
SKA53]
gi|84510034|gb|EAQ06491.1| Histone-like DNA-binding protein (IHF) [Loktanella vestfoldensis
SKA53]
Length = 100
Score = 84.8 bits (209), Expect = 3e-15, Method: Composition-based stats.
Identities = 25/95 (26%), Positives = 48/95 (50%), Gaps = 1/95 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
+ L + + L+ D +V +L ++ +L G V+I FG+F+VR +AAR+
Sbjct: 7 TRMDLAEAVHNE-VGLSRNDSADLVESVLTHVSDSLVAGDTVKISSFGTFAVRDKAARVG 65
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDST 96
R P + + + + V FR +K+R+ S + +
Sbjct: 66 RNPKTGEEVPIHPRRVLTFRPSHLMKDRVASGNKS 100
>gi|148556459|ref|YP_001264041.1| integration host factor subunit alpha [Sphingomonas wittichii
RW1]
gi|166918531|sp|A5VC87|IHFA_SPHWW RecName: Full=Integration host factor subunit alpha;
Short=IHF-alpha
gi|148501649|gb|ABQ69903.1| integration host factor, alpha subunit [Sphingomonas wittichii
RW1]
Length = 100
Score = 84.8 bits (209), Expect = 4e-15, Method: Composition-based stats.
Identities = 28/89 (31%), Positives = 48/89 (53%), Gaps = 1/89 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
++ L + ++ L+ D +V +LE M ALA G V+I GFGSF +R++ R+
Sbjct: 9 TRADLSEEVHREI-GLSRADSAAVVEQVLEHMCLALARGENVKISGFGSFILREKGQRIG 67
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P + + + V FRA + L++R+
Sbjct: 68 RNPKTGVEVPIAPRRVLTFRASQMLRDRI 96
>gi|85859156|ref|YP_461358.1| DNA-binding protein HU [Syntrophus aciditrophicus SB]
gi|85722247|gb|ABC77190.1| DNA-binding protein HU [Syntrophus aciditrophicus SB]
Length = 90
Score = 84.8 bits (209), Expect = 4e-15, Method: Composition-based stats.
Identities = 28/91 (30%), Positives = 45/91 (49%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI IA++ + K + + + + L G++ + GFG+FSV R AR
Sbjct: 1 MTKAELISVIAEE-AGITKASASKALESYVNTVAKELNKTGKLGLVGFGTFSVVMREARE 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P +I + K V F+ GK L E++
Sbjct: 60 GRNPQTGDIIKIPAKKVVKFKPGKELSEKIK 90
>gi|160872801|ref|ZP_02062933.1| integration host factor, beta subunit [Rickettsiella grylli]
gi|159121600|gb|EDP46938.1| integration host factor, beta subunit [Rickettsiella grylli]
Length = 100
Score = 84.8 bits (209), Expect = 4e-15, Method: Composition-based stats.
Identities = 40/99 (40%), Positives = 54/99 (54%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M+KS LI + K P+L V+K V L++ + Q L G R+EIRGFGSFS+ AAR
Sbjct: 1 MLKSELINQLILKFPQLQASTVKKSVEHLIQLLEQTLHQGHRIEIRGFGSFSLHYNAARS 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDSTLSN 99
A P ++ EK F+ GK LK +N P T +
Sbjct: 61 AFNPKTKEHFLAPEKYRIHFKMGKTLKYCMNKPTQTTTE 99
>gi|290959979|ref|YP_003491161.1| DNA-binding protein HU1/hs1 [Streptomyces scabiei 87.22]
gi|260649505|emb|CBG72620.1| DNA-binding protein HU1/hs1 [Streptomyces scabiei 87.22]
Length = 93
Score = 84.8 bits (209), Expect = 4e-15, Method: Composition-based stats.
Identities = 26/94 (27%), Positives = 41/94 (43%), Gaps = 2/94 (2%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGG-RVEIRGFGSFSVRKRAAR 59
M +S L+ +A + ++ +D + ++ E + +A G +V I GF +F RAAR
Sbjct: 1 MNRSELVAALADR-AEVTRKDADAVLAAFAEVVGDIVAKGDEKVTIPGFLTFERTHRAAR 59
Query: 60 LARAPLAQKVISVEEKMVPFFRAGKNLKERLNSP 93
AR P I + AG LKE
Sbjct: 60 TARNPQTGDPIQIPAGYSVKVSAGSKLKEAAKGK 93
>gi|256545177|ref|ZP_05472543.1| DNA-binding protein HU [Anaerococcus vaginalis ATCC 51170]
gi|256399218|gb|EEU12829.1| DNA-binding protein HU [Anaerococcus vaginalis ATCC 51170]
Length = 93
Score = 84.8 bits (209), Expect = 4e-15, Method: Composition-based stats.
Identities = 34/94 (36%), Positives = 54/94 (57%), Gaps = 2/94 (2%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS L+ I++K+ L + E+ +N +E +T++L +V++ GFG+F R R AR
Sbjct: 1 MNKSELLVNISEKS-GLKKVEAERALNAFIETVTESLKKEEKVQLVGFGTFETRDRKARE 59
Query: 61 ARAPLA-QKVISVEEKMVPFFRAGKNLKERLNSP 93
R P +VI + P F+AGK LKE +N+
Sbjct: 60 GRNPRKPDEVIKIPASKAPVFKAGKTLKEAVNNK 93
>gi|220926815|ref|YP_002502117.1| integration host factor subunit alpha [Methylobacterium nodulans
ORS 2060]
gi|219951422|gb|ACL61814.1| integration host factor, alpha subunit [Methylobacterium nodulans
ORS 2060]
Length = 105
Score = 84.8 bits (209), Expect = 4e-15, Method: Composition-based stats.
Identities = 25/90 (27%), Positives = 46/90 (51%), Gaps = 1/90 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
++ L + ++ L+ + +V +L E+ LA+G V++ FGSF VR + R+
Sbjct: 7 TRADLTEAVYQR-VGLSRTESAALVETVLSEICTCLASGETVKLSSFGSFVVRDKGKRVG 65
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P +++E + V F+ LK R+N
Sbjct: 66 RNPKTGVEVAIEPRRVMVFKPSNVLKARIN 95
>gi|268592573|ref|ZP_06126794.1| integration host factor, alpha subunit [Providencia rettgeri DSM
1131]
gi|291311987|gb|EFE52440.1| integration host factor, alpha subunit [Providencia rettgeri DSM
1131]
Length = 98
Score = 84.8 bits (209), Expect = 4e-15, Method: Composition-based stats.
Identities = 26/89 (29%), Positives = 48/89 (53%), Gaps = 1/89 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ + + +K ++ +D + +V EE+ +L NG +V++ GFG+F +R + R
Sbjct: 4 TKAEMSENLFEKL-GVSKRDAKDLVETFFEEVRLSLENGEQVKLSGFGNFDLRDKNQRPG 62
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P + I + + V FR G+ LK R+
Sbjct: 63 RNPKTGEDIPITARRVVTFRPGQKLKSRV 91
>gi|71906960|ref|YP_284547.1| integration host factor, alpha subunit [Dechloromonas aromatica
RCB]
gi|71846581|gb|AAZ46077.1| Integration host factor, alpha subunit [Dechloromonas aromatica
RCB]
Length = 113
Score = 84.8 bits (209), Expect = 4e-15, Method: Composition-based stats.
Identities = 23/95 (24%), Positives = 46/95 (48%), Gaps = 1/95 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
+ K+ L ++ + N ++ +++V +E++ L G +++ GFG FS+R + R
Sbjct: 11 ITKADLAEHLSNEI-GFNNREAKEVVEAFFKELSDCLERGEEIKLAGFGVFSMRNKPERP 69
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDS 95
R P + I + + V F A LK + S +
Sbjct: 70 GRNPKTGEEIPITARRVVTFHASGCLKSAVESSPN 104
>gi|126215723|sp|Q47GF4|IHFA1_DECAR RecName: Full=Integration host factor subunit alpha 1;
Short=IHF-alpha 1
Length = 105
Score = 84.8 bits (209), Expect = 4e-15, Method: Composition-based stats.
Identities = 23/95 (24%), Positives = 46/95 (48%), Gaps = 1/95 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
+ K+ L ++ + N ++ +++V +E++ L G +++ GFG FS+R + R
Sbjct: 3 ITKADLAEHLSNEI-GFNNREAKEVVEAFFKELSDCLERGEEIKLAGFGVFSMRNKPERP 61
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDS 95
R P + I + + V F A LK + S +
Sbjct: 62 GRNPKTGEEIPITARRVVTFHASGCLKSAVESSPN 96
>gi|194336507|ref|YP_002018301.1| histone family protein DNA-binding protein [Pelodictyon
phaeoclathratiforme BU-1]
gi|194308984|gb|ACF43684.1| histone family protein DNA-binding protein [Pelodictyon
phaeoclathratiforme BU-1]
Length = 102
Score = 84.8 bits (209), Expect = 4e-15, Method: Composition-based stats.
Identities = 34/98 (34%), Positives = 51/98 (52%), Gaps = 1/98 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K L+ IA + L + E +VN L E + +L G R+EIRGFGSF++R + R A
Sbjct: 6 TKVDLVNVIAHRT-GLTKNETESVVNSLFESIIDSLKAGKRIEIRGFGSFNIRHKNLRQA 64
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDSTLSN 99
R P + ++VE K VP F+ K K ++ +
Sbjct: 65 RNPRTGEKVTVEPKNVPAFKISKEFKLAVSESLKSDDE 102
>gi|227824814|ref|ZP_03989646.1| nucleoid DNA-binding protein [Acidaminococcus sp. D21]
gi|226905313|gb|EEH91231.1| nucleoid DNA-binding protein [Acidaminococcus sp. D21]
Length = 91
Score = 84.8 bits (209), Expect = 4e-15, Method: Composition-based stats.
Identities = 33/92 (35%), Positives = 53/92 (57%), Gaps = 1/92 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI +A K + +D EK VN ++ + +A+A +V++ GFG+F R R AR
Sbjct: 1 MNKSELISEVASKTA-MPKKDAEKAVNAFIDTVKEAIAQKDKVQLIGFGTFEARVRKARN 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
+ P + I +++ VP F+AGK K+ +N
Sbjct: 60 GKNPRTGETIKIKKATVPAFKAGKAFKDAVNK 91
>gi|145636219|ref|ZP_01791889.1| predicted transporter [Haemophilus influenzae PittHH]
gi|145270741|gb|EDK10674.1| predicted transporter [Haemophilus influenzae PittHH]
Length = 96
Score = 84.8 bits (209), Expect = 4e-15, Method: Composition-based stats.
Identities = 27/94 (28%), Positives = 51/94 (54%), Gaps = 1/94 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
+ K +I ++ K +L+ D + +V LEE+ +L +G V++ GFG+F +R +++R
Sbjct: 4 ITKIDIIEYLSDKY-QLSKYDTKNVVENFLEEIRSSLESGHDVKLSGFGNFELRDKSSRP 62
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSPD 94
R P V+ V + V F+ G+ L+ R+
Sbjct: 63 GRNPKTGDVVPVSARRVVTFKPGQKLRARVEKTK 96
>gi|85859096|ref|YP_461298.1| integration host factor beta-subunit [Syntrophus aciditrophicus
SB]
gi|85722187|gb|ABC77130.1| integration host factor beta-subunit [Syntrophus aciditrophicus
SB]
Length = 93
Score = 84.8 bits (209), Expect = 4e-15, Method: Composition-based stats.
Identities = 41/93 (44%), Positives = 55/93 (59%), Gaps = 1/93 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI ++KK L + +++N+L + T+ L GGR+EIRGFGSF VR A
Sbjct: 1 MNKSELIEALSKK-EGLTEKKAIEVINLLFKGFTEELQKGGRIEIRGFGSFVVRNYNAYT 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSP 93
R P K I V K +PFF+ GK LKER++
Sbjct: 60 GRNPKTGKNIKVSPKRLPFFKVGKELKERVDGK 92
>gi|268609408|ref|ZP_06143135.1| nucleoid protein Hbs [Ruminococcus flavefaciens FD-1]
Length = 91
Score = 84.8 bits (209), Expect = 4e-15, Method: Composition-based stats.
Identities = 31/92 (33%), Positives = 46/92 (50%), Gaps = 1/92 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI +IA K +D + L + +AL NG +V I GFG+F VR+R +
Sbjct: 1 MTKTELINSIADK-ANCTKKDAASALEATLAAIQEALENGDKVSITGFGTFEVRERGEKT 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
P + + P F+AG+ LKE +N
Sbjct: 60 CINPKTKAKMVCPPCKAPAFKAGRGLKEAVNK 91
>gi|34539986|ref|NP_904465.1| DNA-binding protein HU [Porphyromonas gingivalis W83]
gi|188994099|ref|YP_001928351.1| DNA-binding protein HU [Porphyromonas gingivalis ATCC 33277]
gi|34396297|gb|AAQ65364.1| DNA-binding protein HU [Porphyromonas gingivalis W83]
gi|188593779|dbj|BAG32754.1| DNA-binding protein HU [Porphyromonas gingivalis ATCC 33277]
Length = 88
Score = 84.8 bits (209), Expect = 4e-15, Method: Composition-based stats.
Identities = 30/86 (34%), Positives = 47/86 (54%), Gaps = 1/86 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ I +A+K L D ++ VN E +T+ + G ++ + GFG+FSV +RAAR
Sbjct: 1 MNKTDFIAAVAEK-ANLTKADAQRAVNAFAEVVTEQMNAGEKIALIGFGTFSVSERAARK 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNL 86
P +K IS+ + V F+ G L
Sbjct: 60 GINPKTKKSISIPARKVVRFKPGSTL 85
>gi|148826992|ref|YP_001291745.1| integration host factor subunit alpha [Haemophilus influenzae
PittGG]
gi|166918507|sp|A5UF06|IHFA_HAEIG RecName: Full=Integration host factor subunit alpha;
Short=IHF-alpha
gi|148718234|gb|ABQ99361.1| 50S ribosomal protein L35 [Haemophilus influenzae PittGG]
Length = 96
Score = 84.8 bits (209), Expect = 4e-15, Method: Composition-based stats.
Identities = 28/94 (29%), Positives = 50/94 (53%), Gaps = 1/94 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
+ K +I ++ K L+ QD + +V LEE+ +L G V++ GFG+F +R +++R
Sbjct: 4 ITKLDIIEYLSDKY-HLSKQDTKNVVENFLEEIRLSLEFGQDVKLSGFGNFELRDKSSRP 62
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSPD 94
R P V+ V + V F+ G+ L+ R+
Sbjct: 63 GRNPKTGDVVPVSARRVVTFKPGQKLRARVEKTK 96
>gi|297191835|ref|ZP_06909233.1| DNA-binding protein HU 2 [Streptomyces pristinaespiralis ATCC
25486]
gi|197722028|gb|EDY65936.1| DNA-binding protein HU 2 [Streptomyces pristinaespiralis ATCC
25486]
Length = 216
Score = 84.8 bits (209), Expect = 4e-15, Method: Composition-based stats.
Identities = 32/95 (33%), Positives = 48/95 (50%), Gaps = 2/95 (2%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ L+ IA K Q V+ +L+ + +A G RV + GFGSF R AR
Sbjct: 1 MNKAQLVEAIADKLGG--RQQAADAVDAVLDAIVRATVAGDRVSVTGFGSFEKVDRPARY 58
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDS 95
AR P + + V++ VP FRAG+ K+ ++
Sbjct: 59 ARNPQTGERVRVKKTSVPRFRAGQGFKDLVSGSKK 93
>gi|184200009|ref|YP_001854216.1| HU_IHF family transcriptional regulator [Kocuria rhizophila
DC2201]
gi|183580239|dbj|BAG28710.1| putative DNA-binding protein HU [Kocuria rhizophila DC2201]
Length = 94
Score = 84.8 bits (209), Expect = 4e-15, Method: Composition-based stats.
Identities = 24/93 (25%), Positives = 42/93 (45%), Gaps = 1/93 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M +S L+ +A+K+ V +++ L E +++ G ++ I G+ S RAAR
Sbjct: 3 MNRSELVAEVAEKSGN-TQAAVNGVLDSLFEVFESSVSKGEKITIPGWMSVERTDRAARQ 61
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSP 93
R P + I + AG LK ++S
Sbjct: 62 GRNPQTGEAIQIPAGHGVKLTAGSKLKAAVSSK 94
>gi|27380130|ref|NP_771659.1| integration host factor subunit alpha [Bradyrhizobium japonicum
USDA 110]
gi|27353284|dbj|BAC50284.1| integration host factor alpha subunit [Bradyrhizobium japonicum
USDA 110]
Length = 119
Score = 84.8 bits (209), Expect = 4e-15, Method: Composition-based stats.
Identities = 27/98 (27%), Positives = 48/98 (48%), Gaps = 1/98 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
+ L + +K L+ + V ++L+E+T L G V++ FGSF VRK+ R+
Sbjct: 15 TRVDLCEAVYQK-VGLSRTESSAFVELVLKEITDCLEKGETVKLSSFGSFMVRKKGQRIG 73
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDSTLSN 99
R P + + + V F+ LK+R+N+ T +
Sbjct: 74 RNPKTGTEVPISPRRVMVFKPSAILKQRINAQHRTNGD 111
>gi|325111062|ref|YP_004272130.1| histone family protein DNA-binding protein [Planctomyces
brasiliensis DSM 5305]
gi|324971330|gb|ADY62108.1| histone family protein DNA-binding protein [Planctomyces
brasiliensis DSM 5305]
Length = 136
Score = 84.8 bits (209), Expect = 4e-15, Method: Composition-based stats.
Identities = 32/92 (34%), Positives = 50/92 (54%), Gaps = 3/92 (3%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANG--GRVEIRGFGSFSVRKRAA 58
M K ++ I+ + L + IV E + + L + R+E+R FG F V+KRAA
Sbjct: 1 MTKKEIVKAISDEL-GLTQLQTKAIVQRTFESIIETLVHDPKHRIELRNFGVFEVKKRAA 59
Query: 59 RLARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R AR P + + VEEK V F+ GK ++E++
Sbjct: 60 RKARNPRTNERVDVEEKYVVTFKPGKEMEEKV 91
>gi|238022788|ref|ZP_04603214.1| hypothetical protein GCWU000324_02699 [Kingella oralis ATCC 51147]
gi|237865991|gb|EEP67127.1| hypothetical protein GCWU000324_02699 [Kingella oralis ATCC 51147]
Length = 120
Score = 84.8 bits (209), Expect = 4e-15, Method: Composition-based stats.
Identities = 24/89 (26%), Positives = 45/89 (50%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ L + +K ++ D ++IV + EE+ L G ++I GFG+F +R + R
Sbjct: 26 TKAELADILVEKVSSISKHDAKEIVELFFEEIRTTLERGEEIKISGFGNFQLRDKPQRPG 85
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P + +++ + V F A + LK +
Sbjct: 86 RNPKTGEEVAITARRVVTFHASQKLKGMV 114
>gi|78355172|ref|YP_386621.1| histone-like DNA-binding protein [Desulfovibrio desulfuricans
subsp. desulfuricans str. G20]
gi|78217577|gb|ABB36926.1| histone-like DNA-binding protein [Desulfovibrio desulfuricans
subsp. desulfuricans str. G20]
Length = 95
Score = 84.8 bits (209), Expect = 4e-15, Method: Composition-based stats.
Identities = 18/92 (19%), Positives = 38/92 (41%), Gaps = 2/92 (2%)
Query: 2 IKSSLIGTIAKKNPKL--NYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAAR 59
K+ + P++ EK + + + +A V + G+ +V +RA R
Sbjct: 3 TKAEFVAAFKDALPEVFETKVSAEKAYDAFCQVLADGIAKNEGVRLPNVGALTVAERAER 62
Query: 60 LARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + +++ + V F K+L + +N
Sbjct: 63 QGRNPQTGQPMTIPARKVVKFSPAKSLVDGVN 94
>gi|311114526|ref|YP_003985747.1| DNA-binding protein HU [Gardnerella vaginalis ATCC 14019]
gi|310946020|gb|ADP38724.1| DNA-binding protein HU [Gardnerella vaginalis ATCC 14019]
Length = 105
Score = 84.8 bits (209), Expect = 4e-15, Method: Composition-based stats.
Identities = 26/89 (29%), Positives = 39/89 (43%), Gaps = 1/89 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
KS L+ IA+K+ L E VN + +AL +G +++ G S KRA R
Sbjct: 16 NKSDLVSKIAQKS-NLTKAQAEAAVNAFQDVFVEALQSGEGLKLTGLFSAERVKRAERTG 74
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P + I + AG LK+ +
Sbjct: 75 RNPRTGETIKIPASYGVRISAGSLLKKAV 103
>gi|189426728|ref|YP_001953904.1| histone family protein DNA-binding protein [Geobacter lovleyi SZ]
gi|189422987|gb|ACD97384.1| histone family protein DNA-binding protein [Geobacter lovleyi SZ]
Length = 93
Score = 84.4 bits (208), Expect = 4e-15, Method: Composition-based stats.
Identities = 24/91 (26%), Positives = 47/91 (51%), Gaps = 1/91 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ LI +A++ + +D +V L+ + L +G ++I FG F V+++ AR
Sbjct: 4 TKNKLIQLVAEQQ-HITLKDAALLVEELITLIKATLESGESLKIAKFGLFEVKEKHARRG 62
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P + I++E + V F+ L++ +N
Sbjct: 63 RNPQTGEAITIEPRKVISFKPSVLLRQAINQ 93
>gi|295690336|ref|YP_003594029.1| histone family protein DNA-binding protein [Caulobacter segnis
ATCC 21756]
gi|295432239|gb|ADG11411.1| histone family protein DNA-binding protein [Caulobacter segnis
ATCC 21756]
Length = 92
Score = 84.4 bits (208), Expect = 4e-15, Method: Composition-based stats.
Identities = 26/91 (28%), Positives = 40/91 (43%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M S L+ PKL + +++ + + +T+A G V I GFG F V+ + AR
Sbjct: 1 MNVSDLVDAAVAAEPKLTKAQAKALIDGVFKALTEAAVKGEEVSIPGFGKFKVQAKPART 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P I + F K LK+ +N
Sbjct: 61 GRNPSTGATIEIAASKKVAFTPAKQLKDAVN 91
>gi|224541850|ref|ZP_03682389.1| hypothetical protein CATMIT_01022 [Catenibacterium mitsuokai DSM
15897]
gi|224525200|gb|EEF94305.1| hypothetical protein CATMIT_01022 [Catenibacterium mitsuokai DSM
15897]
Length = 90
Score = 84.4 bits (208), Expect = 4e-15, Method: Composition-based stats.
Identities = 25/91 (27%), Positives = 46/91 (50%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K LI +++K L +D E +VN + + M +++ +G +V I GFG+F + R
Sbjct: 1 MNKKELINIVSEKR-DLTKKDAEILVNTVFDTMVESMIDGDKVLISGFGTFKINHCLERK 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
+P ++ I + F+ LK+ +N
Sbjct: 60 GVSPKTKEPIIIPASRTVSFKPSNRLKDAMN 90
>gi|309389063|gb|ADO76943.1| bacterial nucleoid protein Hbs [Halanaerobium praevalens DSM
2228]
Length = 99
Score = 84.4 bits (208), Expect = 4e-15, Method: Composition-based stats.
Identities = 30/99 (30%), Positives = 53/99 (53%), Gaps = 9/99 (9%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALA--------NGGRVEIRGFGSFS 52
M K+ LI +A+K + +D ++VN ++ + L N V++ GFG+F
Sbjct: 1 MTKNELIDVVAEKT-GVTKKDTGEVVNETIDTIMNYLKSEAKKDEDNRDNVQLIGFGTFE 59
Query: 53 VRKRAARLARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
V+ R+AR R P + + + + VP FR+GK+ KE ++
Sbjct: 60 VKDRSARKGRNPQTGEELQIPARKVPVFRSGKSFKETVD 98
>gi|297617754|ref|YP_003702913.1| histone family protein DNA-binding protein [Syntrophothermus
lipocalidus DSM 12680]
gi|297145591|gb|ADI02348.1| histone family protein DNA-binding protein [Syntrophothermus
lipocalidus DSM 12680]
Length = 112
Score = 84.4 bits (208), Expect = 4e-15, Method: Composition-based stats.
Identities = 32/90 (35%), Positives = 54/90 (60%), Gaps = 1/90 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ L+ ++A+K + ++ K+++ + + +ALA G +V+I GFG+F VR R AR
Sbjct: 1 MNKAELVKSLAEK-AGVTQKEAGKVLDAAVASIQEALAGGDKVQIIGFGTFEVRNRRARK 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
+P + I V VP F+ GK+LKE +
Sbjct: 60 VISPATGEEIEVPATRVPAFKPGKSLKEAV 89
>gi|91200990|emb|CAJ74047.1| unknown protein [Candidatus Kuenenia stuttgartiensis]
Length = 103
Score = 84.4 bits (208), Expect = 4e-15, Method: Composition-based stats.
Identities = 35/95 (36%), Positives = 53/95 (55%), Gaps = 1/95 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K L IA+K + V+K + M L+E+ L+ G R+E+R FG F +R+RAAR A
Sbjct: 5 TKRDLCEKIARKTDN-THMVVKKTIQMFLDEIIGELSQGNRIELRDFGVFEIRQRAARKA 63
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDST 96
R P +V V K V F+ GK ++E++ + T
Sbjct: 64 RNPRTGEVAFVPSKNVVVFKVGKLMREKVGNSPQT 98
>gi|86605642|ref|YP_474405.1| DNA-binding protein HU [Synechococcus sp. JA-3-3Ab]
gi|86554184|gb|ABC99142.1| DNA-binding protein HU [Synechococcus sp. JA-3-3Ab]
Length = 105
Score = 84.4 bits (208), Expect = 4e-15, Method: Composition-based stats.
Identities = 27/97 (27%), Positives = 49/97 (50%), Gaps = 8/97 (8%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALAN-------GGRVEIRGFGSFSV 53
M K+ L+ +A + + ++ E ++ LE + + +A+ G+V + GFGSF
Sbjct: 1 MNKAELVDAVAHR-ANVTKKEAEAVLTAALEIIVEEVASRDENGEPKGKVTLVGFGSFEA 59
Query: 54 RKRAARLARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
RKR R R P + + + +VP F AGK ++ +
Sbjct: 60 RKRKQREGRNPKTNEKMVIPASIVPTFTAGKTFRDAV 96
>gi|37526554|ref|NP_929898.1| integration host factor subunit alpha [Photorhabdus luminescens
subsp. laumondii TTO1]
gi|253989352|ref|YP_003040708.1| integration host factor subunit alpha [Photorhabdus asymbiotica
subsp. asymbiotica ATCC 43949]
gi|81707667|sp|Q7N3Q2|IHFA_PHOLL RecName: Full=Integration host factor subunit alpha;
Short=IHF-alpha
gi|36785985|emb|CAE15037.1| integration host factor alpha chain (IHF-alpha) [Photorhabdus
luminescens subsp. laumondii TTO1]
gi|253780802|emb|CAQ83964.1| integration host factor subunit alpha (ihf-alpha) [Photorhabdus
asymbiotica]
Length = 98
Score = 84.4 bits (208), Expect = 4e-15, Method: Composition-based stats.
Identities = 26/89 (29%), Positives = 50/89 (56%), Gaps = 1/89 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ + + +K ++ +D + +V + EE+ ++L NG +V++ GFG+F +R + R
Sbjct: 4 TKAEMSENLFEKL-GISKRDAKDLVELFFEEVRRSLENGEQVKLSGFGNFDLRDKNQRPG 62
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P + I + + V FR G+ LK R+
Sbjct: 63 RNPKTGEDIPITARRVVTFRPGQKLKSRV 91
>gi|253584037|ref|ZP_04861235.1| DNA-binding protein HU [Fusobacterium varium ATCC 27725]
gi|251834609|gb|EES63172.1| DNA-binding protein HU [Fusobacterium varium ATCC 27725]
Length = 91
Score = 84.4 bits (208), Expect = 4e-15, Method: Composition-based stats.
Identities = 26/91 (28%), Positives = 47/91 (51%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K + +K ++ + E+ V +L E+ + L +G + G+G F V ++A R+
Sbjct: 1 MTKKDFAKALFEKGIFVSKAESERKVEAILTEIEEVLKSGEELNFIGWGKFEVVQKAERM 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + I +E K F+AGK L +++N
Sbjct: 61 GRNPKTGEEIKIEAKKSVKFKAGKTLVDKIN 91
>gi|219849666|ref|YP_002464099.1| histone family protein DNA-binding protein [Chloroflexus
aggregans DSM 9485]
gi|219543925|gb|ACL25663.1| histone family protein DNA-binding protein [Chloroflexus
aggregans DSM 9485]
Length = 91
Score = 84.4 bits (208), Expect = 4e-15, Method: Composition-based stats.
Identities = 31/91 (34%), Positives = 52/91 (57%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ I +A++ K++ ++ ++I++ LE +T+ALA G +V + GFG+F VR R AR
Sbjct: 1 MQKTDFIKAVAER-AKVSQKETKQIIDTALEVITEALARGEKVTLTGFGTFEVRSRQARE 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
P ++ I + P F A LKE +
Sbjct: 60 GVNPQTREKIHIPATKTPGFSASSTLKEAVK 90
>gi|291457432|ref|ZP_06596822.1| DNA-binding protein HU [Bifidobacterium breve DSM 20213]
gi|291381267|gb|EFE88785.1| DNA-binding protein HU [Bifidobacterium breve DSM 20213]
Length = 93
Score = 84.4 bits (208), Expect = 4e-15, Method: Composition-based stats.
Identities = 26/89 (29%), Positives = 41/89 (46%), Gaps = 1/89 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
KS L+ IA+K+ L E VN + +A+ +G +++ G S KRAAR
Sbjct: 4 NKSDLVSKIAQKS-NLTKAQAEAAVNAFQDVFVEAMKSGEGLKLTGLFSAERVKRAARTG 62
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P + I++ AG LK+ +
Sbjct: 63 RNPRTGETINIPASYGVRISAGSLLKKAV 91
>gi|220922907|ref|YP_002498209.1| histone family protein DNA-binding protein [Methylobacterium
nodulans ORS 2060]
gi|219947514|gb|ACL57906.1| histone family protein DNA-binding protein [Methylobacterium
nodulans ORS 2060]
Length = 113
Score = 84.4 bits (208), Expect = 4e-15, Method: Composition-based stats.
Identities = 31/93 (33%), Positives = 47/93 (50%), Gaps = 1/93 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M+++ LI IA+ NP L E +V +L+ M +AL R+ +RGFG+F R AR
Sbjct: 1 MVRAQLIQRIAELNPHLRPGVAEAVVRTILDRMGEALVQEERIALRGFGTFKTNARGAR- 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSP 93
P + ++V + FRA + RLN
Sbjct: 60 GHNPRTGEAVAVPARRDVRFRASTEMLHRLNDK 92
>gi|22299810|ref|NP_683057.1| DNA-binding protein HU [Thermosynechococcus elongatus BP-1]
gi|22295994|dbj|BAC09819.1| DNA-binding protein HU [Thermosynechococcus elongatus BP-1]
Length = 111
Score = 84.4 bits (208), Expect = 4e-15, Method: Composition-based stats.
Identities = 30/91 (32%), Positives = 50/91 (54%), Gaps = 3/91 (3%)
Query: 1 MIKSSLIGTIAKKN---PKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRA 57
M K+ L+ + + + + VE I++ +EE+ +A+A G +V + GFG+F R+R
Sbjct: 4 MNKAELVDAVFNRAHSANNVTKKQVEAIISATVEEIMEAVAKGEKVTLVGFGAFERRERK 63
Query: 58 ARLARAPLAQKVISVEEKMVPFFRAGKNLKE 88
AR R P ++ + + VP F AGK KE
Sbjct: 64 AREGRNPKTKEKMQIPATNVPAFSAGKLFKE 94
>gi|183598822|ref|ZP_02960315.1| hypothetical protein PROSTU_02254 [Providencia stuartii ATCC
25827]
gi|188021030|gb|EDU59070.1| hypothetical protein PROSTU_02254 [Providencia stuartii ATCC
25827]
Length = 98
Score = 84.4 bits (208), Expect = 5e-15, Method: Composition-based stats.
Identities = 26/89 (29%), Positives = 48/89 (53%), Gaps = 1/89 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ + + +K ++ +D + +V EE+ +L NG +V++ GFG+F +R + R
Sbjct: 4 TKAEMSENLFEKL-GVSKRDAKDLVESFFEEVRLSLENGEQVKLSGFGNFDLRDKNQRPG 62
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P + I + + V FR G+ LK R+
Sbjct: 63 RNPKTGEDIPITARRVVTFRPGQKLKSRV 91
>gi|52425144|ref|YP_088281.1| HimA protein [Mannheimia succiniciproducens MBEL55E]
gi|81691393|sp|Q65TL4|IHFA_MANSM RecName: Full=Integration host factor subunit alpha;
Short=IHF-alpha
gi|52307196|gb|AAU37696.1| HimA protein [Mannheimia succiniciproducens MBEL55E]
Length = 98
Score = 84.4 bits (208), Expect = 5e-15, Method: Composition-based stats.
Identities = 27/95 (28%), Positives = 48/95 (50%), Gaps = 1/95 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K L + +K+ LN + + +V EE+ AL G V++ GFG+F +R++A+R
Sbjct: 4 TKVELADNLIEKH-GLNKSEAKALVEDFFEEIRVALEKGNDVKLSGFGNFELREKASRPG 62
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDST 96
R P + + V + V F+ G+ L+ R+
Sbjct: 63 RNPKTGESVPVSARRVVVFKPGQKLRARVEKTKPK 97
>gi|294791461|ref|ZP_06756618.1| DNA-binding protein HU [Scardovia inopinata F0304]
gi|294457932|gb|EFG26286.1| DNA-binding protein HU [Scardovia inopinata F0304]
Length = 92
Score = 84.4 bits (208), Expect = 5e-15, Method: Composition-based stats.
Identities = 27/89 (30%), Positives = 42/89 (47%), Gaps = 1/89 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
KS L+ IA+K L E +N E + ++L +G + + G S S KRAAR
Sbjct: 4 NKSDLVAKIAQKTS-LTKAQSEAAINAFQEVLVESLESGEGLRLTGVLSASRVKRAARTG 62
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P + I++ +AG LK+ +
Sbjct: 63 RNPRTGEAINIPAGYGVKLQAGSLLKKAV 91
>gi|238897499|ref|YP_002923178.1| HU, DNA-binding transcriptional regulator, alpha subunit-1
[Candidatus Hamiltonella defensa 5AT (Acyrthosiphon
pisum)]
gi|229465256|gb|ACQ67030.1| HU, DNA-binding transcriptional regulator, alpha subunit-1
[Candidatus Hamiltonella defensa 5AT (Acyrthosiphon
pisum)]
Length = 113
Score = 84.4 bits (208), Expect = 5e-15, Method: Composition-based stats.
Identities = 28/90 (31%), Positives = 44/90 (48%), Gaps = 1/90 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI + K+ L + V + + +AL V+I FG+F VR R R+
Sbjct: 1 MNKTELIEQVRDKS-GLTKAQSTEAVTAVFSSIIEALGKKEPVQIIRFGTFKVRHRKERI 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
+R P + I + V F AGK+LK+ +
Sbjct: 60 SRNPKTGEKIKTPAREVAVFSAGKSLKDSV 89
>gi|171060236|ref|YP_001792585.1| histone family protein DNA-binding protein [Leptothrix cholodnii
SP-6]
gi|170777681|gb|ACB35820.1| histone family protein DNA-binding protein [Leptothrix cholodnii
SP-6]
Length = 131
Score = 84.4 bits (208), Expect = 5e-15, Method: Composition-based stats.
Identities = 27/91 (29%), Positives = 44/91 (48%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI +AK++ L+ + +I+ +L+ + + GG V + GFGSF RAAR
Sbjct: 1 MNKAELIEVLAKQHT-LSKAEAARILATVLDTVVATVKKGGAVTLPGFGSFKQHARAARN 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
P I + +P F G K ++
Sbjct: 60 GVNPGTGDKIKIAAVKLPKFTPGTAFKAAVD 90
>gi|307294086|ref|ZP_07573930.1| integration host factor, alpha subunit [Sphingobium
chlorophenolicum L-1]
gi|306880237|gb|EFN11454.1| integration host factor, alpha subunit [Sphingobium
chlorophenolicum L-1]
Length = 98
Score = 84.4 bits (208), Expect = 5e-15, Method: Composition-based stats.
Identities = 23/89 (25%), Positives = 48/89 (53%), Gaps = 1/89 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
++ L ++ ++ L+ + ++ +LE M+ AL G V+I FG+F +R + R+
Sbjct: 8 TRADLAESV-NRHIGLSRAEAATLIESILEHMSAALERGENVKISSFGTFVLRDKTQRMG 66
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P + +E + V FRA + +++R+
Sbjct: 67 RNPKTGVEVPIEPRRVLTFRASQTMRDRV 95
>gi|156740686|ref|YP_001430815.1| histone family protein DNA-binding protein [Roseiflexus
castenholzii DSM 13941]
gi|156232014|gb|ABU56797.1| histone family protein DNA-binding protein [Roseiflexus
castenholzii DSM 13941]
Length = 92
Score = 84.4 bits (208), Expect = 5e-15, Method: Composition-based stats.
Identities = 29/92 (31%), Positives = 48/92 (52%), Gaps = 1/92 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ I +A++ + ++ ++IV+ LE +T+AL G +V + GFG+F VR+R AR
Sbjct: 1 MQKTDFIKAVAER-ANRSQKETKEIVDAALEVITEALKRGEKVTLTGFGTFEVRQRQARE 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
P + I + P F A LK +
Sbjct: 60 GVNPQTRSKIHIPATRTPGFSASSTLKNAVKE 91
>gi|300725859|ref|ZP_07059323.1| DNA-binding protein, HU family [Prevotella bryantii B14]
gi|299776847|gb|EFI73393.1| DNA-binding protein, HU family [Prevotella bryantii B14]
Length = 94
Score = 84.4 bits (208), Expect = 5e-15, Method: Composition-based stats.
Identities = 32/92 (34%), Positives = 48/92 (52%), Gaps = 1/92 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI IA+K L+ D +K + + +ALA +V++ GFG+FSV R AR
Sbjct: 4 MNKTELIDKIAEK-AGLSKADSKKAFESTVAAIKEALAENDKVQLIGFGTFSVTSRPARE 62
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
P + I + K V F+AG L + +N
Sbjct: 63 GINPSTKAKIQIPAKNVIKFKAGAELSDAVNK 94
>gi|89054274|ref|YP_509725.1| integration host factor subunit alpha [Jannaschia sp. CCS1]
gi|123094287|sp|Q28RG2|IHFA_JANSC RecName: Full=Integration host factor subunit alpha;
Short=IHF-alpha
gi|88863823|gb|ABD54700.1| integration host factor alpha subunit [Jannaschia sp. CCS1]
Length = 100
Score = 84.4 bits (208), Expect = 5e-15, Method: Composition-based stats.
Identities = 24/89 (26%), Positives = 49/89 (55%), Gaps = 1/89 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
+ L + ++ L+ + ++V +L+ M+ AL +G +V++ FG+FSVR + AR+
Sbjct: 7 TRMDLSEAVFRE-VGLSRNESSELVERVLQLMSDALVDGEQVKVSSFGTFSVRSKTARVG 65
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P + + + + V FR +K+R+
Sbjct: 66 RNPKTGEEVPISPRRVLTFRPSHLMKDRV 94
>gi|302558180|ref|ZP_07310522.1| DNA binding protein HU [Streptomyces griseoflavus Tu4000]
gi|302475798|gb|EFL38891.1| DNA binding protein HU [Streptomyces griseoflavus Tu4000]
Length = 213
Score = 84.4 bits (208), Expect = 5e-15, Method: Composition-based stats.
Identities = 32/95 (33%), Positives = 50/95 (52%), Gaps = 2/95 (2%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ L+ IA K Q + V+ +L+ + +A+ G RV + GFGSF R AR
Sbjct: 1 MNKAQLVEAIADKVGG--RQQAAEAVDHVLDAIVRAVVAGERVSVTGFGSFEKVDRPARY 58
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDS 95
AR P + + V++ VP FRAG+ K+ ++
Sbjct: 59 ARNPQTGERVRVKKTSVPRFRAGQGFKDLVSGSKK 93
>gi|295836876|ref|ZP_06823809.1| DNA-binding protein HU [Streptomyces sp. SPB74]
gi|302521508|ref|ZP_07273850.1| integration host factor, alpha subunit [Streptomyces sp. SPB78]
gi|295826251|gb|EFG64756.1| DNA-binding protein HU [Streptomyces sp. SPB74]
gi|302430403|gb|EFL02219.1| integration host factor, alpha subunit [Streptomyces sp. SPB78]
Length = 93
Score = 84.4 bits (208), Expect = 5e-15, Method: Composition-based stats.
Identities = 26/94 (27%), Positives = 42/94 (44%), Gaps = 2/94 (2%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGG-RVEIRGFGSFSVRKRAAR 59
M +S L+ +A + ++ +D + ++ E + +A G +V I GF +F RAAR
Sbjct: 1 MNRSELVAALADR-AEVTRKDADAVLAAFAEVVGDVVAKGDEKVTIPGFLTFERTHRAAR 59
Query: 60 LARAPLAQKVISVEEKMVPFFRAGKNLKERLNSP 93
AR P + I + AG LKE
Sbjct: 60 TARNPQTGEPIQIAAGYSVKVSAGSKLKEAAKGK 93
>gi|82701627|ref|YP_411193.1| integration host factor subunit alpha [Nitrosospira multiformis
ATCC 25196]
gi|123727231|sp|Q2YBS0|IHFA_NITMU RecName: Full=Integration host factor subunit alpha;
Short=IHF-alpha
gi|82409692|gb|ABB73801.1| integration host factor, alpha subunit [Nitrosospira multiformis
ATCC 25196]
Length = 101
Score = 84.4 bits (208), Expect = 5e-15, Method: Composition-based stats.
Identities = 26/92 (28%), Positives = 44/92 (47%), Gaps = 1/92 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ L + +K N ++ + +V EE+ AL NG V++ GFG+F +R + R
Sbjct: 4 TKAELADLLFEK-VGFNKREAKDMVESFYEEVRIALQNGDGVKLSGFGNFQLRDKPQRPG 62
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLNSP 93
R P + I + + V F A + LK +
Sbjct: 63 RNPKTGEEIPITARRVVTFHASQKLKAMVEKN 94
>gi|118580201|ref|YP_901451.1| histone family protein DNA-binding protein [Pelobacter
propionicus DSM 2379]
gi|118502911|gb|ABK99393.1| histone family protein DNA-binding protein [Pelobacter
propionicus DSM 2379]
Length = 91
Score = 84.4 bits (208), Expect = 5e-15, Method: Composition-based stats.
Identities = 31/90 (34%), Positives = 52/90 (57%), Gaps = 1/90 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M +S LI +A + ++++ E+I+ ++ MT+A+ R+EIRG GSF +++
Sbjct: 1 MNRSELIEHLALR-KDISHKRAEEIITLIFSAMTEAMVKNERIEIRGLGSFVIKEYDTYT 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P + I V K +PFF+ GK LKE +
Sbjct: 60 GRNPKTGEPILVRPKKLPFFKVGKELKEMV 89
>gi|154248715|ref|YP_001409540.1| histone family protein DNA-binding protein [Fervidobacterium
nodosum Rt17-B1]
gi|154152651|gb|ABS59883.1| histone family protein DNA-binding protein [Fervidobacterium
nodosum Rt17-B1]
Length = 91
Score = 84.4 bits (208), Expect = 5e-15, Method: Composition-based stats.
Identities = 32/92 (34%), Positives = 53/92 (57%), Gaps = 1/92 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K L+ +A+K +L +DV+ +V+ + E + +AL G +V++ FG+F V+K A R
Sbjct: 1 MNKKLLVNAVAEKT-QLKKKDVKAVVDAVFETIAEALEKGEKVQLVDFGTFEVKKMAGRT 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
P + I + + VP FR GK LK ++N
Sbjct: 60 GVNPRTKSKIKIPSRKVPKFRPGKVLKSKVNK 91
>gi|53715702|ref|YP_101694.1| DNA-binding protein HU-beta [Bacteroides fragilis YCH46]
gi|60683640|ref|YP_213784.1| putative histone-like DNA-binding protein HU3 [Bacteroides
fragilis NCTC 9343]
gi|253566484|ref|ZP_04843937.1| DNA-binding protein HU-beta [Bacteroides sp. 3_2_5]
gi|265767353|ref|ZP_06095019.1| integration host factor, beta subunit [Bacteroides sp. 2_1_16]
gi|52218567|dbj|BAD51160.1| DNA-binding protein HU-beta [Bacteroides fragilis YCH46]
gi|60495074|emb|CAH09893.1| putative histone-like DNA-binding protein HU3 [Bacteroides
fragilis NCTC 9343]
gi|251944656|gb|EES85131.1| DNA-binding protein HU-beta [Bacteroides sp. 3_2_5]
gi|263252658|gb|EEZ24170.1| integration host factor, beta subunit [Bacteroides sp. 2_1_16]
gi|301165152|emb|CBW24722.1| putative histone-like DNA-binding protein HU3 [Bacteroides
fragilis 638R]
Length = 90
Score = 84.4 bits (208), Expect = 5e-15, Method: Composition-based stats.
Identities = 29/91 (31%), Positives = 51/91 (56%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI +A ++ L+ D +K + +T+AL+ G ++ + GFG+FSV +R+AR+
Sbjct: 1 MNKAELINAMAAES-GLSKVDSKKALEAFFSSVTKALSAGDKISLVGFGTFSVAERSARM 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
P +K I + K V F+ G L + +
Sbjct: 60 GINPSTKKAIEIPAKKVAKFKPGAELTDAIK 90
>gi|268609259|ref|ZP_06142986.1| nucleoid DNA-binding protein [Ruminococcus flavefaciens FD-1]
Length = 92
Score = 84.4 bits (208), Expect = 5e-15, Method: Composition-based stats.
Identities = 32/93 (34%), Positives = 52/93 (55%), Gaps = 1/93 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI +A+K ++ E VN ++ +T ALA+G +V I GFG+F VR R +
Sbjct: 1 MTKTELISAVAEKT-DFTKKNAESAVNAMIAAITDALASGEKVSIVGFGTFEVRDRKEKQ 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSP 93
P +K+++ P F+AG+ LK +N+
Sbjct: 60 VINPQTKKMMTAPASKAPAFKAGQALKNAVNNK 92
>gi|261868043|ref|YP_003255965.1| integration host factor subunit alpha [Aggregatibacter
actinomycetemcomitans D11S-1]
gi|293389947|ref|ZP_06634281.1| integration host factor, alpha subunit [Aggregatibacter
actinomycetemcomitans D7S-1]
gi|261413375|gb|ACX82746.1| integration host factor, alpha subunit [Aggregatibacter
actinomycetemcomitans D11S-1]
gi|290950481|gb|EFE00600.1| integration host factor, alpha subunit [Aggregatibacter
actinomycetemcomitans D7S-1]
Length = 98
Score = 84.4 bits (208), Expect = 5e-15, Method: Composition-based stats.
Identities = 26/95 (27%), Positives = 47/95 (49%), Gaps = 1/95 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K L + +K L+ ++ + +V EE+ AL G V++ GFG+F +R +A+R
Sbjct: 4 TKVELAENLIEKF-HLSKREAKDLVESFFEEIRVALETGNDVKLSGFGNFELRDKASRPG 62
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDST 96
R P + + V + V F+ G+ L+ R+
Sbjct: 63 RNPKTGESVPVSARRVVVFKPGQKLRNRVEKVKPK 97
>gi|51246021|ref|YP_065905.1| DNA-binding protein HU [Desulfotalea psychrophila LSv54]
gi|50877058|emb|CAG36898.1| probable DNA-binding protein HU [Desulfotalea psychrophila LSv54]
Length = 90
Score = 84.4 bits (208), Expect = 5e-15, Method: Composition-based stats.
Identities = 34/91 (37%), Positives = 48/91 (52%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K LI +IA ++ EK +N L + + L G +V + GFG+FSV KR AR
Sbjct: 1 MNKKELIESIADA-ADISKGAAEKALNGTLAAIAETLKKGDKVTLVGFGTFSVSKREARD 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P +VI + K + F+AG L E +N
Sbjct: 60 GRNPRTNEVIKIPAKNIAKFKAGSKLSEAIN 90
>gi|114047123|ref|YP_737673.1| histone family protein DNA-binding protein [Shewanella sp. MR-7]
gi|113888565|gb|ABI42616.1| histone family protein DNA-binding protein [Shewanella sp. MR-7]
Length = 91
Score = 84.4 bits (208), Expect = 5e-15, Method: Composition-based stats.
Identities = 25/92 (27%), Positives = 45/92 (48%), Gaps = 1/92 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI IA + + + +V +L+++ AL+ G +V + FG+F +R +
Sbjct: 1 MNKAQLIQRIATSLEQ-SQASTKPVVEQILQQIHIALSEGEKVFLPQFGTFELRFHLPKS 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P + I + P F+A LK+ +N
Sbjct: 60 GRNPQTGETIEIAGFNQPSFKAATALKKAINE 91
>gi|15616661|ref|NP_239873.1| DNA-binding protein HU-alpha [Buchnera aphidicola str. APS
(Acyrthosiphon pisum)]
gi|219681974|ref|YP_002468358.1| DNA-binding protein hu-alpha [Buchnera aphidicola str. Tuc7
(Acyrthosiphon pisum)]
gi|11131509|sp|P57144|DBH_BUCAI RecName: Full=DNA-binding protein HU
gi|25294374|pir||G84933 DNA-binding protein hu-alpha [imported] - Buchnera sp. (strain
APS)
gi|10038724|dbj|BAB12759.1| DNA-binding protein hu-alpha [Buchnera aphidicola str. APS
(Acyrthosiphon pisum)]
gi|219621707|gb|ACL29863.1| DNA-binding protein hu-alpha [Buchnera aphidicola str. Tuc7
(Acyrthosiphon pisum)]
gi|311085779|gb|ADP65861.1| DNA-binding protein hu-alpha [Buchnera aphidicola str. LL01
(Acyrthosiphon pisum)]
gi|311086354|gb|ADP66435.1| DNA-binding protein hu-alpha [Buchnera aphidicola str. TLW03
(Acyrthosiphon pisum)]
gi|311086932|gb|ADP67012.1| DNA-binding protein hu-alpha [Buchnera aphidicola str. JF99
(Acyrthosiphon pisum)]
gi|311087520|gb|ADP67599.1| DNA-binding protein hu-alpha [Buchnera aphidicola str. JF98
(Acyrthosiphon pisum)]
Length = 92
Score = 84.4 bits (208), Expect = 5e-15, Method: Composition-based stats.
Identities = 31/92 (33%), Positives = 46/92 (50%), Gaps = 1/92 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI I+KK+ L+ + + L + +L G V+I GFG+F V R++R
Sbjct: 1 MNKTQLINVISKKS-NLSKIQAKLTLETTLSTIIDSLKKGESVQIVGFGTFKVNLRSSRT 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P K I + VP F +GK LK +
Sbjct: 60 GRNPQTGKEIQIPATKVPSFTSGKTLKNAIKQ 91
>gi|221486645|gb|EEE24906.1| DNA-binding protein HU, putative [Toxoplasma gondii GT1]
Length = 235
Score = 84.4 bits (208), Expect = 5e-15, Method: Composition-based stats.
Identities = 25/89 (28%), Positives = 48/89 (53%), Gaps = 1/89 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
+ L+ ++A + ++ +VEK V+ L ++ +L G +V + FGS +R+R R+A
Sbjct: 122 TRKDLVASVAAEL-QVPRAEVEKTVSAFLRHISASLEQGQKVSLSKFGSLGLRRRGERVA 180
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P + ++V P F K LK+++
Sbjct: 181 RNPRTGEQLTVPATTFPTFSFSKVLKDKV 209
>gi|119025570|ref|YP_909415.1| DNA-binding protein HB1 [Bifidobacterium adolescentis ATCC 15703]
gi|154487028|ref|ZP_02028435.1| hypothetical protein BIFADO_00866 [Bifidobacterium adolescentis
L2-32]
gi|171743350|ref|ZP_02919157.1| hypothetical protein BIFDEN_02481 [Bifidobacterium dentium ATCC
27678]
gi|212716910|ref|ZP_03325038.1| hypothetical protein BIFCAT_01854 [Bifidobacterium catenulatum
DSM 16992]
gi|225350744|ref|ZP_03741767.1| hypothetical protein BIFPSEUDO_02313 [Bifidobacterium
pseudocatenulatum DSM 20438]
gi|283455679|ref|YP_003360243.1| DNA-binding protein HU [Bifidobacterium dentium Bd1]
gi|306823294|ref|ZP_07456670.1| DNA-binding protein HU [Bifidobacterium dentium ATCC 27679]
gi|309801902|ref|ZP_07696017.1| DNA-binding protein HB1 [Bifidobacterium dentium JCVIHMP022]
gi|118765154|dbj|BAF39333.1| DNA-binding protein HB1 [Bifidobacterium adolescentis ATCC 15703]
gi|154084891|gb|EDN83936.1| hypothetical protein BIFADO_00866 [Bifidobacterium adolescentis
L2-32]
gi|171278964|gb|EDT46625.1| hypothetical protein BIFDEN_02481 [Bifidobacterium dentium ATCC
27678]
gi|212660195|gb|EEB20770.1| hypothetical protein BIFCAT_01854 [Bifidobacterium catenulatum
DSM 16992]
gi|225158200|gb|EEG71442.1| hypothetical protein BIFPSEUDO_02313 [Bifidobacterium
pseudocatenulatum DSM 20438]
gi|283102313|gb|ADB09419.1| DNA-binding protein HU [Bifidobacterium dentium Bd1]
gi|304553926|gb|EFM41837.1| DNA-binding protein HU [Bifidobacterium dentium ATCC 27679]
gi|308221458|gb|EFO77755.1| DNA-binding protein HB1 [Bifidobacterium dentium JCVIHMP022]
Length = 93
Score = 84.4 bits (208), Expect = 5e-15, Method: Composition-based stats.
Identities = 26/89 (29%), Positives = 40/89 (44%), Gaps = 1/89 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
KS L+ IA+K+ L E VN + +A+ +G +++ G S KRAAR
Sbjct: 4 NKSDLVSKIAQKS-NLTKAQAEAAVNAFQDVFVEAMQSGEGLKLTGLFSAERVKRAARTG 62
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P + I + AG LK+ +
Sbjct: 63 RNPRTGETIEIPATYGVRISAGSLLKKAV 91
>gi|330810587|ref|YP_004355049.1| transcription factor, unclassified [Pseudomonas brassicacearum
subsp. brassicacearum NFM421]
gi|327378695|gb|AEA70045.1| putative Transcription factor, unclassified [Pseudomonas
brassicacearum subsp. brassicacearum NFM421]
Length = 92
Score = 84.4 bits (208), Expect = 5e-15, Method: Composition-based stats.
Identities = 26/92 (28%), Positives = 49/92 (53%), Gaps = 1/92 (1%)
Query: 7 IGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLARAPLA 66
+ ++ LN ++ +++V + EE+ AL + +V++ GFG+F +R + R R P
Sbjct: 2 AERLYEEL-GLNKREAKELVELFFEEIRHALEDNEQVKLSGFGNFDLRDKRQRPGRNPKT 60
Query: 67 QKVISVEEKMVPFFRAGKNLKERLNSPDSTLS 98
+ I + + V FR G+ LK R+ + T S
Sbjct: 61 GEEIPITARRVVTFRPGQKLKARVEAYAGTKS 92
>gi|29831670|ref|NP_826304.1| DNA-binding protein HU 1 [Streptomyces avermitilis MA-4680]
gi|297200046|ref|ZP_06917443.1| integration host factor, beta subunit [Streptomyces sviceus ATCC
29083]
gi|29608786|dbj|BAC72839.1| putative DNA-binding protein Hu 1 [Streptomyces avermitilis
MA-4680]
gi|197710519|gb|EDY54553.1| integration host factor, beta subunit [Streptomyces sviceus ATCC
29083]
Length = 93
Score = 84.4 bits (208), Expect = 5e-15, Method: Composition-based stats.
Identities = 26/94 (27%), Positives = 42/94 (44%), Gaps = 2/94 (2%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGG-RVEIRGFGSFSVRKRAAR 59
M +S L+ +A + ++ +D + ++ E + + +A G +V I GF +F RAAR
Sbjct: 1 MNRSELVAALADR-AEVTRKDADAVLAAFAETVGEIVAKGDEKVTIPGFLTFERTHRAAR 59
Query: 60 LARAPLAQKVISVEEKMVPFFRAGKNLKERLNSP 93
AR P I + AG LKE
Sbjct: 60 TARNPQTGDPIQIPAGYSVKVSAGSKLKEAAKGK 93
>gi|294023740|ref|YP_003547059.1| histone-like DNA-binding protein [Sphingobium japonicum UT26S]
gi|292677520|dbj|BAI99036.1| histone-like DNA-binding protein [Sphingobium japonicum UT26S]
Length = 91
Score = 84.4 bits (208), Expect = 5e-15, Method: Composition-based stats.
Identities = 25/91 (27%), Positives = 45/91 (49%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M S L +A + L+ D +K+V+ + + +A A G + + GFG F V+ + R
Sbjct: 1 MNNSDLAEAVAGAH-GLSKADAKKVVDTVFSTIGEAAAKGDEISLNGFGKFKVKASSERQ 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + I+++ F K +K++LN
Sbjct: 60 GRNPATGETITIKASKKLGFTPAKVIKDKLN 90
>gi|126739445|ref|ZP_01755138.1| integration host factor, alpha subunit [Roseobacter sp.
SK209-2-6]
gi|254477557|ref|ZP_05090943.1| integration host factor, alpha subunit [Ruegeria sp. R11]
gi|126719545|gb|EBA16254.1| integration host factor, alpha subunit [Roseobacter sp.
SK209-2-6]
gi|214031800|gb|EEB72635.1| integration host factor, alpha subunit [Ruegeria sp. R11]
Length = 100
Score = 84.4 bits (208), Expect = 5e-15, Method: Composition-based stats.
Identities = 25/89 (28%), Positives = 50/89 (56%), Gaps = 1/89 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
+ L + ++ L+ + ++V +L+ M+ AL G +V+I FG+FSVR ++AR+
Sbjct: 7 TRMDLSEAVFRE-VGLSRNESAQLVESMLQHMSDALVRGEQVKISSFGTFSVRDKSARVG 65
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P + + ++ + V FR +K+R+
Sbjct: 66 RNPKTGEEVPIQPRRVLTFRPSHLMKDRV 94
>gi|213649077|ref|ZP_03379130.1| integration host factor subunit alpha [Salmonella enterica subsp.
enterica serovar Typhi str. J185]
Length = 92
Score = 84.1 bits (207), Expect = 5e-15, Method: Composition-based stats.
Identities = 26/81 (32%), Positives = 46/81 (56%)
Query: 16 KLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLARAPLAQKVISVEEK 75
L+ +D +++V + EE+ +AL NG +V++ GFG+F +R + R R P + I + +
Sbjct: 10 GLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPGRNPKTGEDIPITAR 69
Query: 76 MVPFFRAGKNLKERLNSPDST 96
V FR G+ LK R+ +
Sbjct: 70 RVVTFRPGQKLKSRVENASPK 90
>gi|329120185|ref|ZP_08248854.1| HU family DNA-binding protein [Neisseria bacilliformis ATCC
BAA-1200]
gi|327463337|gb|EGF09657.1| HU family DNA-binding protein [Neisseria bacilliformis ATCC
BAA-1200]
Length = 97
Score = 84.1 bits (207), Expect = 5e-15, Method: Composition-based stats.
Identities = 25/90 (27%), Positives = 46/90 (51%), Gaps = 1/90 (1%)
Query: 3 KSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLAR 62
K+ L+ A ++ ++++ LL+ + L NG +V I FG+F + + R R
Sbjct: 9 KTELVKQ-AAALSDISTAAAARLIDNLLDTVKTHLRNGFKVSITDFGTFEAQSKPERSGR 67
Query: 63 APLAQKVISVEEKMVPFFRAGKNLKERLNS 92
P + I++ M F+AGK LK+ +N+
Sbjct: 68 NPQTGEAITIAAHMAVKFKAGKALKDAVNA 97
>gi|222085567|ref|YP_002544097.1| bacterial nucleoid DNA-binding protein [Agrobacterium radiobacter
K84]
gi|221723015|gb|ACM26171.1| bacterial nucleoid DNA-binding protein [Agrobacterium radiobacter
K84]
Length = 91
Score = 84.1 bits (207), Expect = 5e-15, Method: Composition-based stats.
Identities = 30/92 (32%), Positives = 47/92 (51%), Gaps = 1/92 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ L+ +A+K + D V+ + + + L GG + + GFGSF+V RAA
Sbjct: 1 MNKNELVSAVAEK-AGITKADAASAVDAVFDAVQAELKKGGDIRLAGFGSFTVSHRAASK 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P + + + VP F GK LK+ +NS
Sbjct: 60 GRNPSTGAEVDIAARNVPKFTPGKGLKDAVNS 91
>gi|238897931|ref|YP_002923611.1| HU, DNA-binding transcriptional regulator, alpha subunit-2
[Candidatus Hamiltonella defensa 5AT (Acyrthosiphon
pisum)]
gi|238898508|ref|YP_002924189.1| DNA-binding protein HU-alpha (HU-2) [Candidatus Hamiltonella
defensa 5AT (Acyrthosiphon pisum)]
gi|229465689|gb|ACQ67463.1| HU, DNA-binding transcriptional regulator, alpha subunit-2
[Candidatus Hamiltonella defensa 5AT (Acyrthosiphon
pisum)]
gi|229466267|gb|ACQ68041.1| DNA-binding protein HU-alpha (HU-2) [Candidatus Hamiltonella
defensa 5AT (Acyrthosiphon pisum)]
Length = 119
Score = 84.1 bits (207), Expect = 5e-15, Method: Composition-based stats.
Identities = 28/90 (31%), Positives = 44/90 (48%), Gaps = 1/90 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI + K+ L + V + + +AL V+I FG+F VR R R+
Sbjct: 1 MNKTELIEQVRDKS-GLTKAQSTEAVTAVFSSIIEALGKKEPVQIIRFGTFKVRHRKERI 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
+R P + I + V F AGK+LK+ +
Sbjct: 60 SRNPKTGEKIKTPAREVAVFSAGKSLKDSV 89
>gi|57242219|ref|ZP_00370158.1| hup protein [Campylobacter upsaliensis RM3195]
gi|57016899|gb|EAL53681.1| hup protein [Campylobacter upsaliensis RM3195]
gi|58979437|gb|AAW83383.1| DNA-binding protein HU [Campylobacter upsaliensis]
Length = 98
Score = 84.1 bits (207), Expect = 5e-15, Method: Composition-based stats.
Identities = 32/86 (37%), Positives = 46/86 (53%), Gaps = 1/86 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ I +A +N +L +D + ++ +T+ LA G + GFG+FS +RAAR
Sbjct: 1 MTKADFISQVA-QNAELTKKDAGAATDAVISTITEVLAKGDSISFIGFGTFSTTERAARE 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNL 86
AR P K I V V F+ GKNL
Sbjct: 60 ARVPSTGKTIKVPATRVAKFKVGKNL 85
>gi|218779503|ref|YP_002430821.1| histone family protein DNA-binding protein [Desulfatibacillum
alkenivorans AK-01]
gi|218760887|gb|ACL03353.1| histone family protein DNA-binding protein [Desulfatibacillum
alkenivorans AK-01]
Length = 97
Score = 84.1 bits (207), Expect = 5e-15, Method: Composition-based stats.
Identities = 28/94 (29%), Positives = 45/94 (47%), Gaps = 1/94 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ ++ I + L + +V LLE + +L NG V I GFG F VR ++ R
Sbjct: 4 TKAQIVEEIHNQL-GLPAKQCATMVEDLLEIIKSSLENGDDVLISGFGKFRVRDKSQRRG 62
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDS 95
R P I ++ + V F L++R+NS +
Sbjct: 63 RNPATGDSIILDARKVVTFTCSGVLRDRINSNEK 96
>gi|57237741|ref|YP_178989.1| DNA-binding protein HU [Campylobacter jejuni RM1221]
gi|121613433|ref|YP_001000587.1| DNA-binding protein HU [Campylobacter jejuni subsp. jejuni
81-176]
gi|148926594|ref|ZP_01810276.1| DNA-binding protein HU like protein [Campylobacter jejuni subsp.
jejuni CG8486]
gi|153951444|ref|YP_001398017.1| DNA-binding protein HU [Campylobacter jejuni subsp. doylei
269.97]
gi|157415169|ref|YP_001482425.1| DNA-binding protein HU [Campylobacter jejuni subsp. jejuni 81116]
gi|167005518|ref|ZP_02271276.1| DNA-binding protein HU-like protein [Campylobacter jejuni subsp.
jejuni 81-176]
gi|205356397|ref|ZP_03223162.1| DNA-binding protein HU [Campylobacter jejuni subsp. jejuni
CG8421]
gi|218562532|ref|YP_002344311.1| DNA-binding protein HU [Campylobacter jejuni subsp. jejuni NCTC
11168]
gi|9789717|sp|Q46121|DBH_CAMJE RecName: Full=DNA-binding protein HU; AltName: Full=HCj
gi|81675587|sp|Q5HUP6|DBH_CAMJR RecName: Full=DNA-binding protein HU
gi|409577|gb|AAA60954.1| hupB [Campylobacter jejuni]
gi|57166545|gb|AAW35324.1| DNA-binding protein HU [Campylobacter jejuni RM1221]
gi|58979331|gb|AAW83330.1| DNA-binding protein HU [Campylobacter jejuni]
gi|58979333|gb|AAW83331.1| DNA-binding protein HU [Campylobacter jejuni]
gi|58979337|gb|AAW83333.1| DNA-binding protein HU [Campylobacter jejuni]
gi|58979341|gb|AAW83335.1| DNA-binding protein HU [Campylobacter jejuni]
gi|58979343|gb|AAW83336.1| DNA-binding protein HU [Campylobacter jejuni]
gi|58979345|gb|AAW83337.1| DNA-binding protein HU [Campylobacter jejuni]
gi|58979359|gb|AAW83344.1| DNA-binding protein HU [Campylobacter jejuni]
gi|58979361|gb|AAW83345.1| DNA-binding protein HU [Campylobacter jejuni]
gi|58979369|gb|AAW83349.1| DNA-binding protein HU [Campylobacter jejuni]
gi|58979371|gb|AAW83350.1| DNA-binding protein HU [Campylobacter jejuni]
gi|58979375|gb|AAW83352.1| DNA-binding protein HU [Campylobacter jejuni subsp. doylei]
gi|58979405|gb|AAW83367.1| DNA-binding protein HU [Campylobacter jejuni subsp. doylei]
gi|58979411|gb|AAW83370.1| DNA-binding protein HU [Campylobacter jejuni]
gi|58979415|gb|AAW83372.1| DNA-binding protein HU [Campylobacter jejuni]
gi|58979417|gb|AAW83373.1| DNA-binding protein HU [Campylobacter jejuni]
gi|58979419|gb|AAW83374.1| DNA-binding protein HU [Campylobacter jejuni]
gi|58979435|gb|AAW83382.1| DNA-binding protein HU [Campylobacter jejuni]
gi|58979439|gb|AAW83384.1| DNA-binding protein HU [Campylobacter jejuni]
gi|58979441|gb|AAW83385.1| DNA-binding protein HU [Campylobacter jejuni]
gi|58979443|gb|AAW83386.1| DNA-binding protein HU [Campylobacter jejuni]
gi|58979445|gb|AAW83387.1| DNA-binding protein HU [Campylobacter jejuni]
gi|58979447|gb|AAW83388.1| DNA-binding protein HU [Campylobacter jejuni]
gi|58979449|gb|AAW83389.1| DNA-binding protein HU [Campylobacter jejuni]
gi|58979451|gb|AAW83390.1| DNA-binding protein HU [Campylobacter jejuni]
gi|58979453|gb|AAW83391.1| DNA-binding protein HU [Campylobacter jejuni]
gi|58979455|gb|AAW83392.1| DNA-binding protein HU [Campylobacter jejuni]
gi|58979457|gb|AAW83393.1| DNA-binding protein HU [Campylobacter jejuni]
gi|58979459|gb|AAW83394.1| DNA-binding protein HU [Campylobacter jejuni]
gi|58979461|gb|AAW83395.1| DNA-binding protein HU [Campylobacter jejuni]
gi|58979485|gb|AAW83407.1| DNA-binding protein HU [Campylobacter jejuni]
gi|112360238|emb|CAL35033.1| DNA-binding protein HU homolog [Campylobacter jejuni subsp.
jejuni NCTC 11168]
gi|121504251|gb|ABM55258.1| DNA-binding protein HU [Campylobacter jejuni subsp. jejuni
81-176]
gi|145845288|gb|EDK22382.1| DNA-binding protein HU like protein [Campylobacter jejuni subsp.
jejuni CG8486]
gi|152938890|gb|ABS43631.1| DNA-binding protein HU [Campylobacter jejuni subsp. doylei
269.97]
gi|157386133|gb|ABV52448.1| DNA-binding protein HU-like protein [Campylobacter jejuni subsp.
jejuni 81116]
gi|205345782|gb|EDZ32420.1| DNA-binding protein HU [Campylobacter jejuni subsp. jejuni
CG8421]
gi|284926146|gb|ADC28498.1| DNA-binding protein HU-like protein [Campylobacter jejuni subsp.
jejuni IA3902]
gi|307747812|gb|ADN91082.1| DNA-binding protein HU [Campylobacter jejuni subsp. jejuni M1]
gi|315058353|gb|ADT72682.1| DNA-binding protein HU-beta [Campylobacter jejuni subsp. jejuni
S3]
gi|315927538|gb|EFV06871.1| DNA-binding protein HU 1 [Campylobacter jejuni subsp. jejuni
DFVF1099]
gi|315929859|gb|EFV09022.1| DNA-binding protein [Campylobacter jejuni subsp. jejuni 305]
gi|315932606|gb|EFV11537.1| DNA-binding protein HU 1 [Campylobacter jejuni subsp. jejuni 327]
Length = 98
Score = 84.1 bits (207), Expect = 5e-15, Method: Composition-based stats.
Identities = 33/90 (36%), Positives = 47/90 (52%), Gaps = 1/90 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ I +A + L +D + ++ +T LA G + GFG+FS ++RAAR
Sbjct: 1 MTKADFISLVA-QTAGLTKKDATTATDAVISTITDVLAKGDSISFIGFGTFSTQERAARE 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
AR P K I V V F+ GKNLKE +
Sbjct: 60 ARVPSTGKTIKVPATRVAKFKVGKNLKEAV 89
>gi|229817265|ref|ZP_04447547.1| hypothetical protein BIFANG_02525 [Bifidobacterium angulatum DSM
20098]
gi|229785054|gb|EEP21168.1| hypothetical protein BIFANG_02525 [Bifidobacterium angulatum DSM
20098]
Length = 94
Score = 84.1 bits (207), Expect = 6e-15, Method: Composition-based stats.
Identities = 26/92 (28%), Positives = 40/92 (43%), Gaps = 1/92 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
KS L+ IA+K+ L E VN + +A+ +G +++ G S KRAAR
Sbjct: 4 NKSDLVSKIAQKS-NLTKAQAEAAVNAFQDVFVEAMKSGEGLKLTGLFSAERVKRAARTG 62
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLNSP 93
R P + I + AG LK+ +
Sbjct: 63 RNPRTGETIEIPATYGVRISAGSLLKKAVTEK 94
>gi|221508402|gb|EEE33989.1| DNA-binding protein HU, putative [Toxoplasma gondii VEG]
Length = 235
Score = 84.1 bits (207), Expect = 6e-15, Method: Composition-based stats.
Identities = 25/89 (28%), Positives = 48/89 (53%), Gaps = 1/89 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
+ L+ ++A + ++ +VEK V+ L ++ +L G +V + FGS +R+R R+A
Sbjct: 122 TRKDLVASVAAEL-QVPRAEVEKTVSAFLRHISASLEQGQKVSLSKFGSLGLRRRGERVA 180
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P + ++V P F K LK+++
Sbjct: 181 RNPRTGEQLTVPATTFPTFSFSKVLKDKV 209
>gi|163741403|ref|ZP_02148794.1| integration host factor, alpha subunit [Phaeobacter gallaeciensis
2.10]
gi|161385137|gb|EDQ09515.1| integration host factor, alpha subunit [Phaeobacter gallaeciensis
2.10]
Length = 92
Score = 84.1 bits (207), Expect = 6e-15, Method: Composition-based stats.
Identities = 26/86 (30%), Positives = 49/86 (56%), Gaps = 1/86 (1%)
Query: 5 SLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLARAP 64
L + ++ L+ + ++V LL+ M+ AL G +V+I FG+FSVR ++AR+ R P
Sbjct: 2 DLSEAVFRE-VGLSRNESAQLVESLLQHMSDALVRGEQVKISSFGTFSVRDKSARVGRNP 60
Query: 65 LAQKVISVEEKMVPFFRAGKNLKERL 90
+ + ++ + V FR +K+R+
Sbjct: 61 KTGEEVPIQPRRVLTFRPSHLMKDRV 86
>gi|257463408|ref|ZP_05627803.1| DNA-binding protein HU [Fusobacterium sp. D12]
gi|317060975|ref|ZP_07925460.1| DNA-binding protein HU [Fusobacterium sp. D12]
gi|313686651|gb|EFS23486.1| DNA-binding protein HU [Fusobacterium sp. D12]
Length = 91
Score = 84.1 bits (207), Expect = 6e-15, Method: Composition-based stats.
Identities = 21/91 (23%), Positives = 36/91 (39%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K + + + E+ + + M + + G I +G V +RA RL
Sbjct: 1 MTKKEFAKVLFDNGVYSSKAEAERNIETIFSLMEECIIRDGSFSITNWGKLEVVERAPRL 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + + + + FR GK E+LN
Sbjct: 61 GRNPKTGEEVKIPSRKSIKFRPGKAFLEKLN 91
>gi|146341332|ref|YP_001206380.1| integration host factor subunit alpha [Bradyrhizobium sp. ORS278]
gi|166918500|sp|A4YW83|IHFA_BRASO RecName: Full=Integration host factor subunit alpha;
Short=IHF-alpha
gi|146194138|emb|CAL78159.1| integration host factor alpha-subunit (IHF-alpha) [Bradyrhizobium
sp. ORS278]
Length = 119
Score = 84.1 bits (207), Expect = 6e-15, Method: Composition-based stats.
Identities = 26/95 (27%), Positives = 46/95 (48%), Gaps = 1/95 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
+ L + +K L+ + V ++L+E+T L G V++ FGSF VRK+ R+
Sbjct: 9 TRVDLCEAVYQK-VGLSRTESSAFVELVLKEITDCLERGETVKLSSFGSFMVRKKGQRIG 67
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDST 96
R P + + + V F+ LK+R+N +
Sbjct: 68 RNPKTGTEVPISPRRVMVFKPSAILKQRINGQQAN 102
>gi|114570072|ref|YP_756752.1| integration host factor subunit alpha [Maricaulis maris MCS10]
gi|122315995|sp|Q0APH3|IHFA_MARMM RecName: Full=Integration host factor subunit alpha;
Short=IHF-alpha
gi|114340534|gb|ABI65814.1| integration host factor, alpha subunit [Maricaulis maris MCS10]
Length = 101
Score = 84.1 bits (207), Expect = 6e-15, Method: Composition-based stats.
Identities = 25/96 (26%), Positives = 50/96 (52%), Gaps = 1/96 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
++ L ++ ++ L+ Q+ +V +L ++ LA G V++ FGSF +R + R+
Sbjct: 7 TRADLAESVYRE-VGLSRQESADLVQSVLAMVSDNLAAGQSVKLSSFGSFLLRDKRGRVG 65
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDSTL 97
R P + ++ + V F+ + LKER++S S
Sbjct: 66 RNPKTGVEVPIDARRVLVFKPSQVLKERVDSALSKD 101
>gi|50843144|ref|YP_056371.1| DNA-binding protein HU [Propionibacterium acnes KPA171202]
gi|282855020|ref|ZP_06264352.1| DNA-binding protein HU [Propionibacterium acnes J139]
gi|289425014|ref|ZP_06426793.1| DNA-binding protein HU [Propionibacterium acnes SK187]
gi|289427803|ref|ZP_06429512.1| DNA-binding protein HU [Propionibacterium acnes J165]
gi|295131204|ref|YP_003581867.1| DNA-binding protein HU [Propionibacterium acnes SK137]
gi|50840746|gb|AAT83413.1| DNA-binding protein HU [Propionibacterium acnes KPA171202]
gi|282581608|gb|EFB86993.1| DNA-binding protein HU [Propionibacterium acnes J139]
gi|289154713|gb|EFD03399.1| DNA-binding protein HU [Propionibacterium acnes SK187]
gi|289158985|gb|EFD07180.1| DNA-binding protein HU [Propionibacterium acnes J165]
gi|291377085|gb|ADE00940.1| DNA-binding protein HU [Propionibacterium acnes SK137]
gi|313763392|gb|EFS34756.1| DNA-binding protein HU [Propionibacterium acnes HL013PA1]
gi|313773269|gb|EFS39235.1| DNA-binding protein HU [Propionibacterium acnes HL074PA1]
gi|313793448|gb|EFS41499.1| DNA-binding protein HU [Propionibacterium acnes HL110PA1]
gi|313801153|gb|EFS42416.1| DNA-binding protein HU [Propionibacterium acnes HL110PA2]
gi|313808502|gb|EFS46967.1| DNA-binding protein HU [Propionibacterium acnes HL087PA2]
gi|313812075|gb|EFS49789.1| DNA-binding protein HU [Propionibacterium acnes HL083PA1]
gi|313812345|gb|EFS50059.1| DNA-binding protein HU [Propionibacterium acnes HL025PA1]
gi|313814684|gb|EFS52398.1| DNA-binding protein HU [Propionibacterium acnes HL059PA1]
gi|313819237|gb|EFS56951.1| DNA-binding protein HU [Propionibacterium acnes HL046PA2]
gi|313821091|gb|EFS58805.1| DNA-binding protein HU [Propionibacterium acnes HL036PA1]
gi|313823483|gb|EFS61197.1| DNA-binding protein HU [Propionibacterium acnes HL036PA2]
gi|313827014|gb|EFS64728.1| DNA-binding protein HU [Propionibacterium acnes HL063PA1]
gi|313834714|gb|EFS72428.1| DNA-binding protein HU [Propionibacterium acnes HL056PA1]
gi|313837917|gb|EFS75631.1| DNA-binding protein HU [Propionibacterium acnes HL086PA1]
gi|314917598|gb|EFS81429.1| DNA-binding protein HU [Propionibacterium acnes HL050PA1]
gi|314919646|gb|EFS83477.1| DNA-binding protein HU [Propionibacterium acnes HL050PA3]
gi|314924276|gb|EFS88107.1| DNA-binding protein HU [Propionibacterium acnes HL001PA1]
gi|314925924|gb|EFS89755.1| DNA-binding protein HU [Propionibacterium acnes HL036PA3]
gi|314930281|gb|EFS94112.1| DNA-binding protein HU [Propionibacterium acnes HL067PA1]
gi|314956860|gb|EFT01014.1| DNA-binding protein HU [Propionibacterium acnes HL027PA1]
gi|314957637|gb|EFT01740.1| DNA-binding protein HU [Propionibacterium acnes HL002PA1]
gi|314960899|gb|EFT05000.1| DNA-binding protein HU [Propionibacterium acnes HL002PA2]
gi|314963337|gb|EFT07437.1| DNA-binding protein HU [Propionibacterium acnes HL082PA1]
gi|314967386|gb|EFT11485.1| DNA-binding protein HU [Propionibacterium acnes HL082PA2]
gi|314968980|gb|EFT13078.1| DNA-binding protein HU [Propionibacterium acnes HL037PA1]
gi|314974014|gb|EFT18110.1| DNA-binding protein HU [Propionibacterium acnes HL053PA1]
gi|314975440|gb|EFT19535.1| DNA-binding protein HU [Propionibacterium acnes HL045PA1]
gi|314979461|gb|EFT23555.1| DNA-binding protein HU [Propionibacterium acnes HL072PA2]
gi|314982105|gb|EFT26198.1| DNA-binding protein HU [Propionibacterium acnes HL110PA3]
gi|314984200|gb|EFT28292.1| DNA-binding protein HU [Propionibacterium acnes HL005PA1]
gi|314988445|gb|EFT32536.1| DNA-binding protein HU [Propionibacterium acnes HL005PA2]
gi|314988636|gb|EFT32727.1| DNA-binding protein HU [Propionibacterium acnes HL005PA3]
gi|315079383|gb|EFT51381.1| DNA-binding protein HU [Propionibacterium acnes HL053PA2]
gi|315080039|gb|EFT52015.1| DNA-binding protein HU [Propionibacterium acnes HL078PA1]
gi|315083409|gb|EFT55385.1| DNA-binding protein HU [Propionibacterium acnes HL027PA2]
gi|315086796|gb|EFT58772.1| DNA-binding protein HU [Propionibacterium acnes HL002PA3]
gi|315089443|gb|EFT61419.1| DNA-binding protein HU [Propionibacterium acnes HL072PA1]
gi|315090344|gb|EFT62320.1| DNA-binding protein HU [Propionibacterium acnes HL110PA4]
gi|315093627|gb|EFT65603.1| DNA-binding protein HU [Propionibacterium acnes HL060PA1]
gi|315097786|gb|EFT69762.1| DNA-binding protein HU [Propionibacterium acnes HL038PA1]
gi|315098017|gb|EFT69993.1| DNA-binding protein HU [Propionibacterium acnes HL059PA2]
gi|315102637|gb|EFT74613.1| DNA-binding protein HU [Propionibacterium acnes HL046PA1]
gi|315104472|gb|EFT76448.1| DNA-binding protein HU [Propionibacterium acnes HL050PA2]
gi|315106215|gb|EFT78191.1| DNA-binding protein HU [Propionibacterium acnes HL030PA1]
gi|315110452|gb|EFT82428.1| DNA-binding protein HU [Propionibacterium acnes HL030PA2]
gi|327325389|gb|EGE67194.1| DNA-binding protein HU [Propionibacterium acnes HL096PA2]
gi|327325467|gb|EGE67271.1| DNA-binding protein HU [Propionibacterium acnes HL103PA1]
gi|327328272|gb|EGE70036.1| DNA-binding protein HU [Propionibacterium acnes HL096PA3]
gi|327332409|gb|EGE74145.1| DNA-binding protein HU [Propionibacterium acnes HL097PA1]
gi|327443682|gb|EGE90336.1| DNA-binding protein HU [Propionibacterium acnes HL043PA1]
gi|327449219|gb|EGE95873.1| DNA-binding protein HU [Propionibacterium acnes HL043PA2]
gi|327450187|gb|EGE96841.1| DNA-binding protein HU [Propionibacterium acnes HL013PA2]
gi|327451216|gb|EGE97870.1| DNA-binding protein HU [Propionibacterium acnes HL087PA3]
gi|327451251|gb|EGE97905.1| DNA-binding protein HU [Propionibacterium acnes HL092PA1]
gi|327452573|gb|EGE99227.1| DNA-binding protein HU [Propionibacterium acnes HL083PA2]
gi|328751969|gb|EGF65585.1| DNA-binding protein HU [Propionibacterium acnes HL025PA2]
gi|328754787|gb|EGF68403.1| DNA-binding protein HU [Propionibacterium acnes HL087PA1]
gi|328756757|gb|EGF70373.1| DNA-binding protein HU [Propionibacterium acnes HL020PA1]
gi|328761031|gb|EGF74583.1| DNA-binding protein HU [Propionibacterium acnes HL099PA1]
gi|332676081|gb|AEE72897.1| DNA-binding protein HU [Propionibacterium acnes 266]
Length = 91
Score = 84.1 bits (207), Expect = 6e-15, Method: Composition-based stats.
Identities = 26/90 (28%), Positives = 41/90 (45%), Gaps = 1/90 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI T+A K L + V L + +T ALA G +V++ G + +R AR
Sbjct: 1 MTKSELIKTVA-KQASLTEAQTNEAVKALTDVITAALAKGEKVQLPGLFTAETVERPARN 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P + +++ A LK+ +
Sbjct: 60 GRNPRTGESMTIPAHKAVKISASSTLKKAV 89
>gi|330994478|ref|ZP_08318403.1| DNA-binding protein HU-1 [Gluconacetobacter sp. SXCC-1]
gi|329758478|gb|EGG74997.1| DNA-binding protein HU-1 [Gluconacetobacter sp. SXCC-1]
Length = 536
Score = 84.1 bits (207), Expect = 6e-15, Method: Composition-based stats.
Identities = 25/80 (31%), Positives = 35/80 (43%)
Query: 15 PKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLARAPLAQKVISVEE 74
L+ D K+++ ++E MTQA G V + FG F V+ AR R P I +
Sbjct: 457 ADLSNADTRKVIDAVVEAMTQAAIRGEEVTLPNFGKFKVKDVPAREGRNPATGATIQIAA 516
Query: 75 KMVPFFRAGKNLKERLNSPD 94
F K LK+ LN
Sbjct: 517 SRKLGFTPAKALKDALNGGK 536
>gi|220924844|ref|YP_002500146.1| histone family protein DNA-binding protein [Methylobacterium
nodulans ORS 2060]
gi|219949451|gb|ACL59843.1| histone family protein DNA-binding protein [Methylobacterium
nodulans ORS 2060]
Length = 105
Score = 84.1 bits (207), Expect = 6e-15, Method: Composition-based stats.
Identities = 24/99 (24%), Positives = 49/99 (49%), Gaps = 1/99 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
+ ++ L + ++ L+ + +V +L E+ LA+G V++ FGSF VR R R+
Sbjct: 6 ITRADLTEAVHQR-VGLSRAESAALVETVLSEICTCLASGEGVKLSSFGSFVVRDRGKRV 64
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDSTLSN 99
R P + +++ + V F+ LK +N + + +
Sbjct: 65 GRNPTTRVEVAIAPRRVMVFKPSNLLKAHVNGGPAKIED 103
>gi|255011460|ref|ZP_05283586.1| putative histone-like DNA-binding protein HU3 [Bacteroides
fragilis 3_1_12]
gi|313149278|ref|ZP_07811471.1| DNA-binding protein HU-beta [Bacteroides fragilis 3_1_12]
gi|313138045|gb|EFR55405.1| DNA-binding protein HU-beta [Bacteroides fragilis 3_1_12]
Length = 90
Score = 84.1 bits (207), Expect = 6e-15, Method: Composition-based stats.
Identities = 29/91 (31%), Positives = 49/91 (53%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI +A ++ L+ D +K + +T+AL+ G ++ + GFG+FSV +RA R
Sbjct: 1 MNKAELINAMAAES-GLSKVDSKKALEAFFSSVTKALSAGDKISLVGFGTFSVAERAERS 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
P +K I + K V F+ G L + +
Sbjct: 60 GINPSTKKAIIIPAKKVAKFKPGAELADAIK 90
>gi|16125619|ref|NP_420183.1| integration host factor alpha-subunit [Caulobacter crescentus
CB15]
gi|221234370|ref|YP_002516806.1| integration host factor subunit alpha [Caulobacter crescentus
NA1000]
gi|81782690|sp|Q9A8I3|IHFA_CAUCR RecName: Full=Integration host factor subunit alpha;
Short=IHF-alpha
gi|254803513|sp|B8H546|IHFA_CAUCN RecName: Full=Integration host factor subunit alpha;
Short=IHF-alpha
gi|13422723|gb|AAK23351.1| integration host factor alpha-subunit [Caulobacter crescentus
CB15]
gi|220963542|gb|ACL94898.1| integration host factor alpha-subunit [Caulobacter crescentus
NA1000]
Length = 100
Score = 84.1 bits (207), Expect = 6e-15, Method: Composition-based stats.
Identities = 27/90 (30%), Positives = 47/90 (52%), Gaps = 1/90 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
++ L + ++ L QD +V L+ + +AL G V++ GFG F VR + AR+
Sbjct: 7 TRADLCEAVHEE-VGLTRQDCAGLVERTLDLVAEALEQGETVKLSGFGVFQVRAKRARMG 65
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + +E + V FRA + +K R++
Sbjct: 66 RNPKTGEPAEIEPRRVIGFRASQVMKARID 95
>gi|170750364|ref|YP_001756624.1| histone family protein DNA-binding protein [Methylobacterium
radiotolerans JCM 2831]
gi|226709734|sp|B1LZ99|IHFA_METRJ RecName: Full=Integration host factor subunit alpha;
Short=IHF-alpha
gi|170656886|gb|ACB25941.1| histone family protein DNA-binding protein [Methylobacterium
radiotolerans JCM 2831]
Length = 106
Score = 84.1 bits (207), Expect = 6e-15, Method: Composition-based stats.
Identities = 24/90 (26%), Positives = 45/90 (50%), Gaps = 1/90 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
++ L + + L+ + +V +L E+ LA+G V++ FGSF VR + R+
Sbjct: 7 TRADLSEAVYHQ-VGLSRTESAALVETVLSEICSCLASGETVKLSSFGSFVVRSKGKRVG 65
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P +++E + V F+ LK ++N
Sbjct: 66 RNPKTGVEVAIEPRQVMVFKPSNVLKAKIN 95
>gi|153805807|ref|ZP_01958475.1| hypothetical protein BACCAC_00044 [Bacteroides caccae ATCC 43185]
gi|149130484|gb|EDM21690.1| hypothetical protein BACCAC_00044 [Bacteroides caccae ATCC 43185]
Length = 90
Score = 84.1 bits (207), Expect = 6e-15, Method: Composition-based stats.
Identities = 29/90 (32%), Positives = 50/90 (55%), Gaps = 1/90 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI +A ++ +++ D +K ++ + +T A+ G +V + GFG+FSV +RA R
Sbjct: 1 MNKSELISAMAAES-QMSKADAKKALDAFITSVTNAMKAGDKVSLVGFGTFSVSERAERT 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
P + I++ K V F+AG L +
Sbjct: 60 GINPSTKATITIPAKKVAKFKAGAELSAAV 89
>gi|325679104|ref|ZP_08158698.1| DNA-binding protein HU-beta [Ruminococcus albus 8]
gi|324109228|gb|EGC03450.1| DNA-binding protein HU-beta [Ruminococcus albus 8]
Length = 92
Score = 84.1 bits (207), Expect = 6e-15, Method: Composition-based stats.
Identities = 34/93 (36%), Positives = 55/93 (59%), Gaps = 1/93 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ L+ IA+KN ++ E ++ ++ +T+AL G +V I GFG+F VR RAA+
Sbjct: 1 MKKAELLAAIAEKN-GSTKKNAEAALDAVISTITEALEKGDKVAIPGFGTFEVRDRAAKK 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSP 93
+ P ++ I V K VP F+A K LK+ ++
Sbjct: 60 SINPATKEPIDVPAKKVPAFKAAKALKDAVDKK 92
>gi|282855395|ref|ZP_06264718.1| histone family protein DNA-binding protein [Pyramidobacter
piscolens W5455]
gi|282586775|gb|EFB92020.1| histone family protein DNA-binding protein [Pyramidobacter
piscolens W5455]
Length = 112
Score = 84.1 bits (207), Expect = 6e-15, Method: Composition-based stats.
Identities = 34/93 (36%), Positives = 52/93 (55%), Gaps = 2/93 (2%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ L+ + +K L D V +LE + L G+V+I GFG+F VR+R+AR
Sbjct: 1 MTKAELVEFVREKT-NLRKVDAANAVAAMLEGVKDTLQKQGKVQIVGFGTFEVRQRSART 59
Query: 61 ARAPL-AQKVISVEEKMVPFFRAGKNLKERLNS 92
R P K + + K VP F+AGK L+E +++
Sbjct: 60 GRNPQDPSKTVHIPAKKVPVFKAGKLLREAVDA 92
>gi|118595083|ref|ZP_01552430.1| integration host factor subunit alpha [Methylophilales bacterium
HTCC2181]
gi|118440861|gb|EAV47488.1| integration host factor subunit alpha [Methylophilales bacterium
HTCC2181]
Length = 100
Score = 84.1 bits (207), Expect = 6e-15, Method: Composition-based stats.
Identities = 26/94 (27%), Positives = 47/94 (50%), Gaps = 1/94 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ L + + LN + +++V EE+ AL NG V++ GFG+F +R +A R
Sbjct: 4 TKAELSEILFDQ-VGLNKSEAKEMVEAFFEEIRSALENGDSVKLSGFGNFDLRTKAERPG 62
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDS 95
R P + I ++ + V F + + LK + +
Sbjct: 63 RNPKTGEEIPIKARRVVTFHSSQKLKTSVEEKTA 96
>gi|99080754|ref|YP_612908.1| integration host factor subunit alpha [Ruegeria sp. TM1040]
gi|123379018|sp|Q1GI70|IHFA_SILST RecName: Full=Integration host factor subunit alpha;
Short=IHF-alpha
gi|99037034|gb|ABF63646.1| integration host factor alpha subunit [Ruegeria sp. TM1040]
Length = 100
Score = 84.1 bits (207), Expect = 6e-15, Method: Composition-based stats.
Identities = 25/90 (27%), Positives = 51/90 (56%), Gaps = 1/90 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
+ + L + ++ L+ + ++V +L+ M+ AL G +V+I FG+FSVR ++AR+
Sbjct: 6 ITRMDLSEAVFRE-VGLSRNESAQLVESMLQHMSDALVRGEQVKISSFGTFSVRDKSARV 64
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P + + ++ + V FR +K+R+
Sbjct: 65 GRNPKTGEEVPIQPRRVLTFRPSHLMKDRV 94
>gi|325266084|ref|ZP_08132770.1| DNA-binding protein HU-beta [Kingella denitrificans ATCC 33394]
gi|324982722|gb|EGC18348.1| DNA-binding protein HU-beta [Kingella denitrificans ATCC 33394]
Length = 101
Score = 84.1 bits (207), Expect = 6e-15, Method: Composition-based stats.
Identities = 31/90 (34%), Positives = 45/90 (50%), Gaps = 1/90 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI +AK++ L D K V+ + AL + + GFG+F V +RA R
Sbjct: 1 MNKSELIDAVAKES-GLTKADAAKAVDAFTSVVKTALKADDTITLVGFGTFKVAERAERQ 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
P ++ I++ VP F GK LK+ L
Sbjct: 60 GLNPKTREAITIPAARVPKFTPGKGLKDAL 89
>gi|320096006|ref|ZP_08027619.1| DNA-binding protein HU [Actinomyces sp. oral taxon 178 str.
F0338]
gi|319977077|gb|EFW08807.1| DNA-binding protein HU [Actinomyces sp. oral taxon 178 str.
F0338]
Length = 93
Score = 84.1 bits (207), Expect = 6e-15, Method: Composition-based stats.
Identities = 20/89 (22%), Positives = 39/89 (43%), Gaps = 1/89 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
++ L+ IA++ L + + + + ++L+ G V++ G S +RAAR
Sbjct: 4 NRTELVAQIAER-ANLTKVQADAALGAFQDVLVESLSKGEPVKVTGLLSVERVERAARTG 62
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P + I + AG LK+ +
Sbjct: 63 RNPRTGEEIKIPAGFGVKLSAGSTLKKAV 91
>gi|299117325|emb|CBN75285.1| DNA-binding protein HU [Ectocarpus siliculosus]
Length = 161
Score = 84.1 bits (207), Expect = 6e-15, Method: Composition-based stats.
Identities = 21/86 (24%), Positives = 43/86 (50%), Gaps = 1/86 (1%)
Query: 7 IGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLARAPLA 66
+ IA+++ L+ E + + + Q +A+G ++ ++GFG+F R R R R P
Sbjct: 73 VEAIAERS-NLDKNQAEAALAAFTDVVMQEVADGNKISLQGFGTFEGRARKGRTGRNPRT 131
Query: 67 QKVISVEEKMVPFFRAGKNLKERLNS 92
+ + ++ P F A K K+ + +
Sbjct: 132 GEELKIKATTAPAFSASKAFKDMVKA 157
>gi|284029180|ref|YP_003379111.1| histone family protein DNA-binding protein [Kribbella flavida DSM
17836]
gi|283808473|gb|ADB30312.1| histone family protein DNA-binding protein [Kribbella flavida DSM
17836]
Length = 97
Score = 84.1 bits (207), Expect = 6e-15, Method: Composition-based stats.
Identities = 22/89 (24%), Positives = 39/89 (43%), Gaps = 1/89 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M ++ L+ +A K + EK+++ L + +T+A+ G +V + G S RA R
Sbjct: 1 MNRNELVAGVAAK-AGIPRNQAEKVLDALGDVVTEAVHKGDKVSLTGLLSIERVLRAPRT 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKER 89
R P + +S+ G LK
Sbjct: 60 GRNPQTGEPLSIPAGYSVRLSCGSRLKAA 88
>gi|237834245|ref|XP_002366420.1| DNA-binding protein HU, putative [Toxoplasma gondii ME49]
gi|211964084|gb|EEA99279.1| DNA-binding protein HU, putative [Toxoplasma gondii ME49]
Length = 235
Score = 84.1 bits (207), Expect = 6e-15, Method: Composition-based stats.
Identities = 25/89 (28%), Positives = 48/89 (53%), Gaps = 1/89 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
+ L+ ++A + ++ +VEK V+ L ++ +L G +V + FGS +R+R R+A
Sbjct: 122 TRKDLVASVAAEL-QVPRAEVEKTVSAFLRHISASLEQGQKVSLSKFGSLGLRRRGERVA 180
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P + ++V P F K LK+++
Sbjct: 181 RNPRTGEQLTVPATTFPTFSFSKVLKDKV 209
>gi|294013226|ref|YP_003546686.1| integration host factor alpha subunit [Sphingobium japonicum
UT26S]
gi|292676556|dbj|BAI98074.1| integration host factor alpha subunit [Sphingobium japonicum
UT26S]
Length = 98
Score = 84.1 bits (207), Expect = 6e-15, Method: Composition-based stats.
Identities = 23/89 (25%), Positives = 48/89 (53%), Gaps = 1/89 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
++ L ++ ++ L+ + ++ +LE M+ AL G V+I FG+F +R + R+
Sbjct: 8 TRADLAESV-NRHIGLSRAEAATLIESILEHMSAALERGENVKISSFGTFVLRDKTQRMG 66
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P + +E + V FRA + +++R+
Sbjct: 67 RNPKTGVEVPIEPRRVLTFRASQTMRDRV 95
>gi|222099394|ref|YP_002533962.1| DNA-binding protein HU [Thermotoga neapolitana DSM 4359]
gi|221571784|gb|ACM22596.1| DNA-binding protein HU [Thermotoga neapolitana DSM 4359]
Length = 90
Score = 84.1 bits (207), Expect = 6e-15, Method: Composition-based stats.
Identities = 41/91 (45%), Positives = 59/91 (64%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K L+ +AKK +DV+ I++ +LE +T+ALA G +V++ GFGSF VRK AAR
Sbjct: 1 MNKKELVDRVAKKAGA-KKKDVKVILDAVLETITEALAKGEKVQLVGFGSFEVRKAAARK 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
P +K I++ E+ VP FR GK LKE++
Sbjct: 60 GVNPQTKKPITIPERKVPKFRPGKALKEKVK 90
>gi|75675600|ref|YP_318021.1| integration host factor, alpha subunit [Nitrobacter winogradskyi
Nb-255]
gi|123773269|sp|Q3SSS2|IHFA_NITWN RecName: Full=Integration host factor subunit alpha;
Short=IHF-alpha
gi|74420470|gb|ABA04669.1| integration host factor, alpha subunit [Nitrobacter winogradskyi
Nb-255]
Length = 106
Score = 84.1 bits (207), Expect = 6e-15, Method: Composition-based stats.
Identities = 28/92 (30%), Positives = 46/92 (50%), Gaps = 1/92 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
+ L + KK L+ + V ++L+E+T L G V++ FGSF VRK+ R+
Sbjct: 9 TRVDLCEAVYKK-VGLSRTESSAFVELVLKEITDCLEKGETVKLSSFGSFMVRKKGQRIG 67
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLNSP 93
R P + + + V F+ LK+R+NS
Sbjct: 68 RNPKTGTEVPISPRRVMVFKPSAILKQRINSN 99
>gi|148654111|ref|YP_001281204.1| histone family protein DNA-binding protein [Psychrobacter sp.
PRwf-1]
gi|148573195|gb|ABQ95254.1| histone family protein DNA-binding protein [Psychrobacter sp.
PRwf-1]
Length = 106
Score = 84.1 bits (207), Expect = 6e-15, Method: Composition-based stats.
Identities = 21/91 (23%), Positives = 45/91 (49%), Gaps = 1/91 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ +I + K Q +V+ +E+ L G V++ GFG+F ++ + +R
Sbjct: 12 TKADIIDHLVVKF-GFTRQQGRMLVDSFFDEIYDNLVGGKDVKLSGFGNFILKDKKSRPG 70
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P + + + + V F+AG+ L+ +++
Sbjct: 71 RNPKTGEEVEISARRVVTFKAGQKLRRQVDE 101
>gi|126640672|ref|YP_001083656.1| integration host factor subunit alpha [Acinetobacter baumannii
ATCC 17978]
Length = 90
Score = 84.1 bits (207), Expect = 6e-15, Method: Composition-based stats.
Identities = 24/87 (27%), Positives = 50/87 (57%), Gaps = 1/87 (1%)
Query: 7 IGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLARAPLA 66
+++ LN ++ +++V + +E++QAL G +V++ GFG+F +R + R R P
Sbjct: 2 ADHLSE-LTSLNRREAKQMVELFFDEISQALIAGEQVKLSGFGNFELRDKRERPGRNPKT 60
Query: 67 QKVISVEEKMVPFFRAGKNLKERLNSP 93
+ I + + V FRAG+ ++R+ +
Sbjct: 61 GEEIPISARRVVTFRAGQKFRQRVGNE 87
>gi|209885010|ref|YP_002288867.1| integration host factor, alpha subunit [Oligotropha
carboxidovorans OM5]
gi|226709737|sp|B6JGR8|IHFA_OLICO RecName: Full=Integration host factor subunit alpha;
Short=IHF-alpha
gi|209873206|gb|ACI93002.1| integration host factor, alpha subunit [Oligotropha
carboxidovorans OM5]
Length = 114
Score = 84.1 bits (207), Expect = 7e-15, Method: Composition-based stats.
Identities = 26/91 (28%), Positives = 46/91 (50%), Gaps = 1/91 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
+ L + +K L+ + V ++L+E+T L G V++ FGSF VRK+ R+
Sbjct: 9 TRVDLCEAVYQK-VGLSRTESAAFVELVLKEITDCLEKGETVKLSSFGSFMVRKKGERIG 67
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P + + + V F+ LK+R+N+
Sbjct: 68 RNPKTGTEVPISPRRVMVFKPSAILKQRINN 98
>gi|325578436|ref|ZP_08148571.1| integration host factor subunit alpha [Haemophilus parainfluenzae
ATCC 33392]
gi|325160172|gb|EGC72301.1| integration host factor subunit alpha [Haemophilus parainfluenzae
ATCC 33392]
Length = 110
Score = 84.1 bits (207), Expect = 7e-15, Method: Composition-based stats.
Identities = 26/96 (27%), Positives = 49/96 (51%), Gaps = 1/96 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
+ K + + K +L + + +V EE+ +L +GG V++ GFG+F +R +A+R
Sbjct: 15 ITKIDITEYLLDKY-QLQKAEAKALVEDFFEEIRLSLESGGEVKLSGFGNFELRNKASRP 73
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDST 96
R P + I V + V F+ G+ L+ R+ +
Sbjct: 74 GRNPKTGESIPVSARRVVAFKPGQKLRARVENTKPK 109
>gi|237738391|ref|ZP_04568872.1| DNA-binding protein HU [Fusobacterium mortiferum ATCC 9817]
gi|229420271|gb|EEO35318.1| DNA-binding protein HU [Fusobacterium mortiferum ATCC 9817]
Length = 91
Score = 84.1 bits (207), Expect = 7e-15, Method: Composition-based stats.
Identities = 25/91 (27%), Positives = 44/91 (48%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K + +K + + E+ ++L + + L G + I G+G F V ++A R+
Sbjct: 1 MTKKDFTKVLFEKGVFSSKAEAERKFEVILNTIEETLKAGDELNIIGWGKFEVVEKAERV 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + I + K F+AGK L E++N
Sbjct: 61 GRNPKTGEEIVIPAKKTVKFKAGKTLVEKMN 91
>gi|301064005|ref|ZP_07204470.1| integration host factor subunit beta [delta proteobacterium
NaphS2]
gi|300441916|gb|EFK06216.1| integration host factor subunit beta [delta proteobacterium
NaphS2]
Length = 92
Score = 84.1 bits (207), Expect = 7e-15, Method: Composition-based stats.
Identities = 39/91 (42%), Positives = 55/91 (60%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI +AK+ L + E++VN + EM +AL + RVEIRG GSF V+
Sbjct: 1 MNKSELIEALAKE-KDLPLRKAEEVVNTVFGEMEKALTDEERVEIRGLGSFKVKHYDGYK 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P ++I+V K +PFF+ GK LKER++
Sbjct: 60 GRNPKTGEIINVGRKKLPFFKVGKELKERVD 90
>gi|284006261|emb|CBA71497.1| integration host factor alpha-subunit [Arsenophonus nasoniae]
Length = 98
Score = 84.1 bits (207), Expect = 7e-15, Method: Composition-based stats.
Identities = 26/89 (29%), Positives = 52/89 (58%), Gaps = 1/89 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ + ++ +K ++ +D + +V + EE+ ++L NG +V++ GFG+F +R ++ R
Sbjct: 4 TKAEMSESLFEKL-GISKRDAKDLVELFFEEVRRSLENGEQVKLSGFGNFDLRDKSQRPG 62
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P + I + + V FR G+ LK R+
Sbjct: 63 RNPKTGEDIPITARRVVTFRPGQKLKGRV 91
>gi|257451617|ref|ZP_05616916.1| DNA-binding protein HU [Fusobacterium sp. 3_1_5R]
gi|257466933|ref|ZP_05631244.1| DNA-binding protein HU [Fusobacterium gonidiaformans ATCC 25563]
gi|315918076|ref|ZP_07914316.1| DNA-binding protein HU [Fusobacterium gonidiaformans ATCC 25563]
gi|317058182|ref|ZP_07922667.1| DNA-binding protein HU [Fusobacterium sp. 3_1_5R]
gi|313683858|gb|EFS20693.1| DNA-binding protein HU [Fusobacterium sp. 3_1_5R]
gi|313691951|gb|EFS28786.1| DNA-binding protein HU [Fusobacterium gonidiaformans ATCC 25563]
Length = 91
Score = 84.1 bits (207), Expect = 7e-15, Method: Composition-based stats.
Identities = 22/91 (24%), Positives = 37/91 (40%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K + + + E+ + + M + + N G I +G V +RA RL
Sbjct: 1 MTKKEFAKVLFDNGVYSSKAEAERNIETIFSLMEECIINDGSFSITNWGKLEVVERAPRL 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + + + + FR GK E+LN
Sbjct: 61 GRNPKTGEEVKIPSRKSIKFRPGKAFLEKLN 91
>gi|328912279|gb|AEB63875.1| SPBc2 prophage-derived DNA-binding protein HU 2 [Bacillus
amyloliquefaciens LL3]
Length = 91
Score = 84.1 bits (207), Expect = 7e-15, Method: Composition-based stats.
Identities = 25/92 (27%), Positives = 46/92 (50%), Gaps = 1/92 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K +G +A + + ++ V + + +++ LA G ++I G G+F VR+RAAR
Sbjct: 1 MNKIEFVGAVANEL-GVTKKEATPNVEGVFKVLSETLAKGESIKIPGVGTFEVRERAARK 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R + I + V F+ K LK+ + +
Sbjct: 60 GRNIQTGEEIEIPASKVVKFKPAKALKDAVKA 91
>gi|308190236|ref|YP_003923167.1| DNA-binding protein HU [Mycoplasma fermentans JER]
gi|319777603|ref|YP_004137254.1| bacterial nucleoid DNA-binding protein [Mycoplasma fermentans
M64]
gi|307624978|gb|ADN69283.1| putative DNA-binding protein HU [Mycoplasma fermentans JER]
gi|318038678|gb|ADV34877.1| Bacterial nucleoid DNA-binding protein [Mycoplasma fermentans
M64]
Length = 91
Score = 83.7 bits (206), Expect = 7e-15, Method: Composition-based stats.
Identities = 21/91 (23%), Positives = 40/91 (43%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K + IA+ ++ + ++ + L + + L +V++ G+F + R R
Sbjct: 1 MTKKEFVQKIAE-MLEVPVRVADQYFDAFLFVLKEQLIAEDKVQLSDLGTFETKIRRGRE 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
P + I V EK V F K L++ +N
Sbjct: 60 TINPFTNEPIQVPEKRVVKFTPSKYLRDIVN 90
>gi|16126570|ref|NP_421134.1| DNA-binding protein HU [Caulobacter crescentus CB15]
gi|221235352|ref|YP_002517789.1| DNA-binding protein HU [Caulobacter crescentus NA1000]
gi|13423856|gb|AAK24302.1| DNA-binding protein HU [Caulobacter crescentus CB15]
gi|220964525|gb|ACL95881.1| DNA-binding protein HU [Caulobacter crescentus NA1000]
Length = 92
Score = 83.7 bits (206), Expect = 7e-15, Method: Composition-based stats.
Identities = 25/91 (27%), Positives = 39/91 (42%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M S L+ + KL + I++ + + ++ A G V I GFG F V+ + AR
Sbjct: 1 MNVSDLVDAAVAADEKLTKTQAKAIIDGVFKSISDAAVKGEEVSIPGFGKFKVQAKPART 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P I + F K LK+ +N
Sbjct: 61 GRNPATGATIEIAASKKVGFTPAKQLKDAVN 91
>gi|330994052|ref|ZP_08317982.1| DNA-binding protein HRL53 [Gluconacetobacter sp. SXCC-1]
gi|329758998|gb|EGG75512.1| DNA-binding protein HRL53 [Gluconacetobacter sp. SXCC-1]
Length = 95
Score = 83.7 bits (206), Expect = 7e-15, Method: Composition-based stats.
Identities = 24/89 (26%), Positives = 42/89 (47%), Gaps = 1/89 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K L+ +A++ L ++V+ + + +ALA+ V + GFG+F R A
Sbjct: 6 NKQELVAAVAEE-ADLAKAKAGEVVDAVFGAIEKALASKQEVRLVGFGTFVTATRKAAKG 64
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P + + + F+ GKNLKE +
Sbjct: 65 RNPRTGEPLDIPASTSVRFKPGKNLKEAV 93
>gi|295689634|ref|YP_003593327.1| histone family protein DNA-binding protein [Caulobacter segnis
ATCC 21756]
gi|295431537|gb|ADG10709.1| histone family protein DNA-binding protein [Caulobacter segnis
ATCC 21756]
Length = 92
Score = 83.7 bits (206), Expect = 7e-15, Method: Composition-based stats.
Identities = 26/90 (28%), Positives = 44/90 (48%), Gaps = 1/90 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ L+ IA+K +N + + ++ +T +L +G V + GFG+F RAA A
Sbjct: 3 TKAELVTAIAEK-AGINKNQAKDALEAFIDAVTDSLKSGQDVRLVGFGTFKAVTRAAGTA 61
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + ++ F+ G+ LK LN
Sbjct: 62 RNPRTGETVNRPASKTARFQVGEGLKSSLN 91
>gi|251792548|ref|YP_003007274.1| integration host factor subunit alpha [Aggregatibacter
aphrophilus NJ8700]
gi|247533941|gb|ACS97187.1| integration host factor, alpha subunit [Aggregatibacter
aphrophilus NJ8700]
Length = 98
Score = 83.7 bits (206), Expect = 7e-15, Method: Composition-based stats.
Identities = 26/95 (27%), Positives = 47/95 (49%), Gaps = 1/95 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K L + +K L+ ++ + +V EE+ AL G V++ GFG+F +R +A+R
Sbjct: 4 TKVELAENLIEKF-HLSKREAKDLVESFFEEIRVALETGNDVKLSGFGNFELRDKASRPG 62
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDST 96
R P + + V + V F+ G+ L+ R+
Sbjct: 63 RNPKTGESVPVSARRVVVFKPGQKLRSRVEKVKPK 97
>gi|29348239|ref|NP_811742.1| DNA-binding protein HU-beta [Bacteroides thetaiotaomicron
VPI-5482]
gi|253569395|ref|ZP_04846805.1| DNA-binding protein HU-beta [Bacteroides sp. 1_1_6]
gi|298386068|ref|ZP_06995625.1| DNA-binding protein HU [Bacteroides sp. 1_1_14]
gi|29340142|gb|AAO77936.1| DNA-binding protein HU-beta [Bacteroides thetaiotaomicron
VPI-5482]
gi|251841414|gb|EES69495.1| DNA-binding protein HU-beta [Bacteroides sp. 1_1_6]
gi|298261296|gb|EFI04163.1| DNA-binding protein HU [Bacteroides sp. 1_1_14]
Length = 90
Score = 83.7 bits (206), Expect = 7e-15, Method: Composition-based stats.
Identities = 30/90 (33%), Positives = 50/90 (55%), Gaps = 1/90 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI +A + +++ D +K ++ + +T A+ G +V + GFG+FSV +RAAR
Sbjct: 1 MNKSELISAMAAE-AQMSKADAKKALDAFISSVTNAMKAGDKVALVGFGTFSVSERAART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
P + I++ K V F+AG L +
Sbjct: 60 GINPSTKAAITIPAKKVAKFKAGAELSAAV 89
>gi|171058612|ref|YP_001790961.1| histone family protein DNA-binding protein [Leptothrix cholodnii
SP-6]
gi|170776057|gb|ACB34196.1| histone family protein DNA-binding protein [Leptothrix cholodnii
SP-6]
Length = 116
Score = 83.7 bits (206), Expect = 7e-15, Method: Composition-based stats.
Identities = 35/90 (38%), Positives = 48/90 (53%), Gaps = 1/90 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
KS LI IA+K ++ + + L+ + L G V + GFG+F+V KRAAR
Sbjct: 28 NKSELIEHIAEK-ADISKAAAARALEALIGGVKSTLKKGDSVSLVGFGTFAVTKRAARSG 86
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P VI ++ VP FR GK LK+ LN
Sbjct: 87 RNPRTGAVIKIKSSKVPKFRPGKALKDSLN 116
>gi|153875700|ref|ZP_02003384.1| Histone-like bacterial DNA-binding protein [Beggiatoa sp. PS]
gi|152067837|gb|EDN66617.1| Histone-like bacterial DNA-binding protein [Beggiatoa sp. PS]
Length = 98
Score = 83.7 bits (206), Expect = 7e-15, Method: Composition-based stats.
Identities = 26/96 (27%), Positives = 48/96 (50%), Gaps = 1/96 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+++ + + LN ++ + +V+ EE+ AL G V++ GFG+F +R + R
Sbjct: 4 TKAAMAEKLFDE-VGLNKREAKDMVDRFFEEVRAALEKGESVKLSGFGNFDLRDKKQRPG 62
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDSTL 97
R P + I + + V FR G+ L+ R+ T
Sbjct: 63 RNPKTGQEIPISARRVVTFRPGQKLRARVEENAGTD 98
>gi|167621831|ref|YP_001676616.1| histone family protein DNA-binding protein [Caulobacter sp. K31]
gi|167351572|gb|ABZ74302.1| histone family protein DNA-binding protein [Caulobacter sp. K31]
Length = 92
Score = 83.7 bits (206), Expect = 7e-15, Method: Composition-based stats.
Identities = 27/91 (29%), Positives = 39/91 (42%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M S LI PKL + I++ + + +T A G + I GFG F V+ + AR
Sbjct: 1 MNVSDLIDAAVAAEPKLTKAQAKAIIDGVFKSLTAAAVKGEEISIPGFGKFKVQAKPART 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P I + F K LK+ +N
Sbjct: 61 GRNPATGGTIQIAASKKVAFTPAKQLKDAVN 91
>gi|74316025|ref|YP_313765.1| histone-like DNA-binding protein [Thiobacillus denitrificans ATCC
25259]
gi|74055520|gb|AAZ95960.1| Histone-like DNA-binding protein [Thiobacillus denitrificans ATCC
25259]
Length = 98
Score = 83.7 bits (206), Expect = 7e-15, Method: Composition-based stats.
Identities = 29/86 (33%), Positives = 41/86 (47%), Gaps = 1/86 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI A ++ + ++ +L +T+A+A G V + GFG+F KRAAR
Sbjct: 1 MNKSELID-FAAAEADISKAAAGRALDAILAAVTKAVAKGDSVTLVGFGTFKSSKRAART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNL 86
R P I + VP F AG
Sbjct: 60 GRNPQTGNEIKIAATTVPRFTAGAGF 85
>gi|332702002|ref|ZP_08422090.1| histone family protein DNA-binding protein [Desulfovibrio africanus
str. Walvis Bay]
gi|332552151|gb|EGJ49195.1| histone family protein DNA-binding protein [Desulfovibrio africanus
str. Walvis Bay]
Length = 120
Score = 83.7 bits (206), Expect = 7e-15, Method: Composition-based stats.
Identities = 25/93 (26%), Positives = 44/93 (47%), Gaps = 1/93 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ ++ I +K LN +++ V LL+ M Q++ + I GFG F + AR
Sbjct: 26 TKAEIVDYIYEKT-DLNRAEIKAHVETLLDIMKQSIKRDHSLLISGFGKFEAYDKRARKG 84
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLNSPD 94
R P + I++ + V FR + + LN +
Sbjct: 85 RNPQTNETITLPPRKVVVFRLSRKFRGELNGEE 117
>gi|226944153|ref|YP_002799226.1| integration host factor subunit alpha [Azotobacter vinelandii DJ]
gi|226719080|gb|ACO78251.1| integration host factor, alpha subunit [Azotobacter vinelandii
DJ]
Length = 92
Score = 83.7 bits (206), Expect = 7e-15, Method: Composition-based stats.
Identities = 26/90 (28%), Positives = 49/90 (54%), Gaps = 1/90 (1%)
Query: 7 IGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLARAPLA 66
+ ++ LN ++ +++V + EE+ QAL + +V++ GFG+F +R + R R P
Sbjct: 2 AERLYEEL-GLNKREAKELVELFFEEIRQALEHNEQVKLSGFGNFDLRDKRQRPGRNPKT 60
Query: 67 QKVISVEEKMVPFFRAGKNLKERLNSPDST 96
+ I + + V FR G+ LK R+ + T
Sbjct: 61 GEEIPITARRVVTFRPGQKLKARVEAYAGT 90
>gi|260433446|ref|ZP_05787417.1| integration host factor, alpha subunit [Silicibacter
lacuscaerulensis ITI-1157]
gi|260417274|gb|EEX10533.1| integration host factor, alpha subunit [Silicibacter
lacuscaerulensis ITI-1157]
Length = 100
Score = 83.7 bits (206), Expect = 7e-15, Method: Composition-based stats.
Identities = 25/89 (28%), Positives = 49/89 (55%), Gaps = 1/89 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
+ L + ++ L+ + ++V +L M+ AL G +V+I FG+FSVR ++AR+
Sbjct: 7 TRMDLSEAVFRE-VGLSRNESAQLVESILNHMSDALVRGEQVKISSFGTFSVRDKSARIG 65
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P + + ++ + V FR +K+R+
Sbjct: 66 RNPKTGEEVPIQPRRVLTFRPSHLMKDRV 94
>gi|90424175|ref|YP_532545.1| integration host factor subunit alpha [Rhodopseudomonas palustris
BisB18]
gi|123089633|sp|Q214G0|IHFA_RHOPB RecName: Full=Integration host factor subunit alpha;
Short=IHF-alpha
gi|90106189|gb|ABD88226.1| integration host factor, alpha subunit [Rhodopseudomonas
palustris BisB18]
Length = 108
Score = 83.7 bits (206), Expect = 7e-15, Method: Composition-based stats.
Identities = 26/92 (28%), Positives = 46/92 (50%), Gaps = 1/92 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
+ L + +K L+ + V ++L+E+T L G V++ FGSF VRK+ R+
Sbjct: 9 TRVDLCEAVYQK-VGLSRTESSAFVELVLKEITDCLEKGETVKLSSFGSFMVRKKGQRIG 67
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLNSP 93
R P + + + V F+ LK+R+N+
Sbjct: 68 RNPKTGTEVPISPRRVMVFKPSAILKQRINAN 99
>gi|330503833|ref|YP_004380702.1| integration host factor subunit alpha [Pseudomonas mendocina
NK-01]
gi|328918119|gb|AEB58950.1| integration host factor subunit alpha [Pseudomonas mendocina
NK-01]
Length = 92
Score = 83.7 bits (206), Expect = 8e-15, Method: Composition-based stats.
Identities = 27/92 (29%), Positives = 49/92 (53%), Gaps = 1/92 (1%)
Query: 7 IGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLARAPLA 66
+ ++ LN ++ +++V + EE+ QAL +V++ GFG+F +R + R R P
Sbjct: 2 AERLYEEL-GLNKREAKELVELFFEEIRQALELNEQVKLSGFGNFDLRDKRQRPGRNPKT 60
Query: 67 QKVISVEEKMVPFFRAGKNLKERLNSPDSTLS 98
+ I + + V FR G+ LK R+ + T S
Sbjct: 61 GEEIPITARRVVTFRPGQKLKARVEAYAGTKS 92
>gi|15616918|ref|NP_240131.1| integration host factor beta-subunit [Buchnera aphidicola str.
APS (Acyrthosiphon pisum)]
gi|219681672|ref|YP_002468058.1| integration host factor beta-subunit [Buchnera aphidicola str. 5A
(Acyrthosiphon pisum)]
gi|219682227|ref|YP_002468611.1| integration host factor beta-subunit [Buchnera aphidicola str.
Tuc7 (Acyrthosiphon pisum)]
gi|257471361|ref|ZP_05635360.1| integration host factor subunit beta [Buchnera aphidicola str.
LSR1 (Acyrthosiphon pisum)]
gi|11132945|sp|P57394|IHFB_BUCAI RecName: Full=Integration host factor subunit beta;
Short=IHF-beta
gi|254803529|sp|B8D999|IHFB_BUCA5 RecName: Full=Integration host factor subunit beta;
Short=IHF-beta
gi|254803530|sp|B8D7K1|IHFB_BUCAT RecName: Full=Integration host factor subunit beta;
Short=IHF-beta
gi|25294346|pir||A84966 integration host factor beta-subunit [imported] - Buchnera sp.
(strain APS)
gi|10038982|dbj|BAB13017.1| integration host factor beta-subunit [Buchnera aphidicola str.
APS (Acyrthosiphon pisum)]
gi|219621960|gb|ACL30116.1| integration host factor beta-subunit [Buchnera aphidicola str.
Tuc7 (Acyrthosiphon pisum)]
gi|219624515|gb|ACL30670.1| integration host factor beta-subunit [Buchnera aphidicola str. 5A
(Acyrthosiphon pisum)]
gi|311086045|gb|ADP66127.1| integration host factor subunit beta [Buchnera aphidicola str.
LL01 (Acyrthosiphon pisum)]
gi|311086618|gb|ADP66699.1| integration host factor subunit beta [Buchnera aphidicola str.
TLW03 (Acyrthosiphon pisum)]
gi|311087201|gb|ADP67281.1| integration host factor subunit beta [Buchnera aphidicola str.
JF99 (Acyrthosiphon pisum)]
gi|311087726|gb|ADP67805.1| integration host factor subunit beta [Buchnera aphidicola str.
JF98 (Acyrthosiphon pisum)]
Length = 94
Score = 83.7 bits (206), Expect = 8e-15, Method: Composition-based stats.
Identities = 40/91 (43%), Positives = 60/91 (65%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
MIKS L IA++ ++ + +E+ +LE M +LANG R+EIRGFGSFS+ R++R+
Sbjct: 1 MIKSELFERIAEQKINISNKMIERAAKEMLEHMIISLANGKRIEIRGFGSFSLHYRSSRI 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P K + + EK VP+F+ GK L++R N
Sbjct: 61 GRNPKTGKSVKLNEKYVPYFKPGKKLRDRAN 91
>gi|332703149|ref|ZP_08423237.1| histone family protein DNA-binding protein [Desulfovibrio
africanus str. Walvis Bay]
gi|332553298|gb|EGJ50342.1| histone family protein DNA-binding protein [Desulfovibrio
africanus str. Walvis Bay]
Length = 95
Score = 83.7 bits (206), Expect = 8e-15, Method: Composition-based stats.
Identities = 26/92 (28%), Positives = 44/92 (47%), Gaps = 2/92 (2%)
Query: 2 IKSSLIGTIAKKNPKL--NYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAAR 59
K+ + ++ + P + EK ++ E + Q + + V + GSF++ RA+R
Sbjct: 3 TKTQFVESLRQALPDVFTTKVSAEKAFDVFCETLAQGIKSNEGVRLPNVGSFALSARASR 62
Query: 60 LARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + I++ EK V F K LKE LN
Sbjct: 63 TGRNPQTGQEITIPEKKVVKFTTSKTLKEDLN 94
>gi|3641282|gb|AAC36331.1| histone-like protein [Caulobacter crescentus CB15]
Length = 92
Score = 83.7 bits (206), Expect = 8e-15, Method: Composition-based stats.
Identities = 28/91 (30%), Positives = 45/91 (49%), Gaps = 1/91 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ L+ IA+K +N + + +E +T +L +G V + GFG+F RAA A
Sbjct: 3 TKAELVTAIAEK-AGINKNQAKDALEAFIEAVTDSLKSGQDVRLVGFGTFKAVTRAAGTA 61
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P + ++ F+ G+ LK LNS
Sbjct: 62 RNPRTGETVNRPASNTARFQVGEGLKSSLNS 92
>gi|303258162|ref|ZP_07344170.1| DNA-binding protein HU [Burkholderiales bacterium 1_1_47]
gi|302859181|gb|EFL82264.1| DNA-binding protein HU [Burkholderiales bacterium 1_1_47]
Length = 92
Score = 83.7 bits (206), Expect = 8e-15, Method: Composition-based stats.
Identities = 30/93 (32%), Positives = 51/93 (54%), Gaps = 1/93 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ L+ +A++ K + DV++I+ L+ ++ + + G + + GFG+F +RAAR
Sbjct: 1 MNKTELVAAVAEETGK-SKADVKEILEALIAQVVKTVKAGDEIALIGFGTFKSAERAART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSP 93
R P K I + + P F AGK K+ LN
Sbjct: 60 GRNPATGKEIKILASIQPKFVAGKMFKDALNGK 92
>gi|15602493|ref|NP_245565.1| hypothetical protein PM0628 [Pasteurella multocida subsp.
multocida str. Pm70]
gi|14194851|sp|Q9CN18|IHFA_PASMU RecName: Full=Integration host factor subunit alpha;
Short=IHF-alpha
gi|12720902|gb|AAK02712.1| HimA [Pasteurella multocida subsp. multocida str. Pm70]
Length = 98
Score = 83.7 bits (206), Expect = 8e-15, Method: Composition-based stats.
Identities = 27/95 (28%), Positives = 48/95 (50%), Gaps = 1/95 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K L + +K LN +D +++V EE+ AL G V++ GFG+F +R +++R
Sbjct: 4 TKVELADNLIEKL-HLNKRDAKELVENFFEEIRVALETGEDVKLSGFGNFELRDKSSRPG 62
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDST 96
R P + + V + V F+ G+ L+ R+
Sbjct: 63 RNPKTGESVPVSARRVVAFKPGQKLRARVEKTKPK 97
>gi|145589020|ref|YP_001155617.1| integration host factor, alpha subunit [Polynucleobacter
necessarius subsp. asymbioticus QLW-P1DMWA-1]
gi|145047426|gb|ABP34053.1| integration host factor, alpha subunit [Polynucleobacter
necessarius subsp. asymbioticus QLW-P1DMWA-1]
Length = 107
Score = 83.7 bits (206), Expect = 8e-15, Method: Composition-based stats.
Identities = 25/91 (27%), Positives = 49/91 (53%), Gaps = 1/91 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ L + + LN ++ + +++ + + Q+L G V+I GFG+F +R ++AR
Sbjct: 11 TKNELSEALFDQ-VGLNKREAKDMIDAFFDRIGQSLEAGTEVKISGFGNFQLRNKSARPG 69
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P ++I + + V F A + LK+ + S
Sbjct: 70 RNPKTGQMIPIAARRVVTFHASQKLKDVVES 100
>gi|114771803|ref|ZP_01449196.1| integration host factor, alpha subunit [alpha proteobacterium
HTCC2255]
gi|114547619|gb|EAU50510.1| integration host factor, alpha subunit [alpha proteobacterium
HTCC2255]
Length = 99
Score = 83.7 bits (206), Expect = 8e-15, Method: Composition-based stats.
Identities = 21/89 (23%), Positives = 46/89 (51%), Gaps = 1/89 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
+ L + ++ L+ + +V +L+ ++ AL G V+I FG+F++R + AR+
Sbjct: 7 TRMDLAEAVFEE-VGLSRNESADLVESVLQHISDALVRGENVKISSFGTFNIRDKNARIG 65
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P + + + + V FR +K+++
Sbjct: 66 RNPKTGEEVPINPRRVLSFRPSHTMKDKV 94
>gi|237740573|ref|ZP_04571054.1| DNA-binding protein HU [Fusobacterium sp. 2_1_31]
gi|262067567|ref|ZP_06027179.1| DNA-binding protein HU [Fusobacterium periodonticum ATCC 33693]
gi|294782350|ref|ZP_06747676.1| DNA-binding protein HU [Fusobacterium sp. 1_1_41FAA]
gi|229422590|gb|EEO37637.1| DNA-binding protein HU [Fusobacterium sp. 2_1_31]
gi|291378682|gb|EFE86200.1| DNA-binding protein HU [Fusobacterium periodonticum ATCC 33693]
gi|294480991|gb|EFG28766.1| DNA-binding protein HU [Fusobacterium sp. 1_1_41FAA]
Length = 92
Score = 83.7 bits (206), Expect = 8e-15, Method: Composition-based stats.
Identities = 27/92 (29%), Positives = 44/92 (47%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K + +K + EK V+++ E M + L +G + I +G V +RA RL
Sbjct: 1 MTKKEFAKLLFEKGVFTTRTEAEKKVDIIFETMEKTLLDGEDISIINWGKLEVVERAPRL 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P + +++ E+ FR GK E+LN
Sbjct: 61 GRNPKTGEEVNIGERKSVKFRPGKAFLEKLNK 92
>gi|281415410|ref|ZP_06247152.1| bacterial nucleoid DNA-binding protein [Micrococcus luteus NCTC
2665]
Length = 91
Score = 83.7 bits (206), Expect = 8e-15, Method: Composition-based stats.
Identities = 20/89 (22%), Positives = 37/89 (41%), Gaps = 1/89 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M + L+ +A+++ V +++ L E T + G +V I G+ + +R R
Sbjct: 1 MNRKELVAAVAERSGN-TQAAVSDVLDALFEVFTAQVKKGEKVSIPGWLAVERTERKERT 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKER 89
R P + I++ AG LK
Sbjct: 60 GRNPRTGEEITIPAGHSVKVTAGSKLKAA 88
>gi|254383272|ref|ZP_04998625.1| histone protein DNA-binding protein [Streptomyces sp. Mg1]
gi|194342170|gb|EDX23136.1| histone protein DNA-binding protein [Streptomyces sp. Mg1]
Length = 224
Score = 83.7 bits (206), Expect = 8e-15, Method: Composition-based stats.
Identities = 32/90 (35%), Positives = 47/90 (52%), Gaps = 2/90 (2%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ L+ IA K Q V+ +L+ + +A G RV + GFGSF R AR
Sbjct: 1 MNKAQLVEAIADKLGG--RQQAADAVDAVLDAIVRATVAGDRVSVTGFGSFEKVDRPARY 58
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
AR P + + V++ VP FRAG+ K+ +
Sbjct: 59 ARNPQTGERVRVKKTSVPRFRAGQGFKDLV 88
>gi|121582539|ref|YP_974071.1| histone family protein DNA-binding protein [Acidovorax sp. JS42]
gi|309783318|ref|ZP_07678028.1| DNA-binding protein, HU family [Ralstonia sp. 5_7_47FAA]
gi|330827371|ref|YP_004390609.1| histone family protein DNA-binding protein [Alicycliphilus
denitrificans K601]
gi|120608597|gb|ABM44336.1| histone family protein DNA-binding protein [Acidovorax sp. JS42]
gi|308917862|gb|EFP63549.1| DNA-binding protein, HU family [Ralstonia sp. 5_7_47FAA]
gi|329312679|gb|AEB87093.1| histone family protein DNA-binding protein [Alicycliphilus
denitrificans K601]
Length = 91
Score = 83.7 bits (206), Expect = 8e-15, Method: Composition-based stats.
Identities = 24/91 (26%), Positives = 39/91 (42%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M + LI IA+ + + ++ L+ + +A GG V++ GFG+F AAR
Sbjct: 1 MNRQDLIDAIAEDTEA-SKAATTRFLDSLITIVQNEVAKGGAVKLTGFGTFEKAAVAART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P I + P F G K+ +
Sbjct: 60 GRNPKTGAPIKIPSTHKPKFTPGATFKDLVK 90
>gi|325663704|ref|ZP_08152108.1| DNA-binding protein HU [Lachnospiraceae bacterium 4_1_37FAA]
gi|331087225|ref|ZP_08336295.1| DNA-binding protein HU [Lachnospiraceae bacterium 9_1_43BFAA]
gi|325470197|gb|EGC73430.1| DNA-binding protein HU [Lachnospiraceae bacterium 4_1_37FAA]
gi|330408911|gb|EGG88372.1| DNA-binding protein HU [Lachnospiraceae bacterium 9_1_43BFAA]
Length = 91
Score = 83.7 bits (206), Expect = 9e-15, Method: Composition-based stats.
Identities = 30/92 (32%), Positives = 55/92 (59%), Gaps = 1/92 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI + +++ +D EK++ ++ +T+ L G +V++ GFG+F V +RAAR
Sbjct: 1 MNKTELIAA-VAEAAEVSKKDSEKVLKAFVDVVTEELKKGEKVQLVGFGTFEVTERAARE 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P ++ + + P F+AGK LK+ +N+
Sbjct: 60 GRNPHTKETMMIAACKAPKFKAGKALKDAVNA 91
>gi|239944579|ref|ZP_04696516.1| putative histone-like DNA-binding protein [Streptomyces
roseosporus NRRL 15998]
gi|239991041|ref|ZP_04711705.1| putative histone-like DNA-binding protein [Streptomyces
roseosporus NRRL 11379]
gi|291448042|ref|ZP_06587432.1| DNA-binding protein HU 2 [Streptomyces roseosporus NRRL 15998]
gi|291350989|gb|EFE77893.1| DNA-binding protein HU 2 [Streptomyces roseosporus NRRL 15998]
Length = 217
Score = 83.7 bits (206), Expect = 9e-15, Method: Composition-based stats.
Identities = 32/95 (33%), Positives = 49/95 (51%), Gaps = 2/95 (2%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ L+ IA K Q V+ +L+ + +A+ G RV + GFGSF R AR
Sbjct: 1 MNKAQLVEAIADKVGG--RQQAADAVDAVLDAIVRAVVAGDRVSVTGFGSFEKVDRPARY 58
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDS 95
AR P + + V++ VP FRAG+ K+ ++
Sbjct: 59 ARNPQTGERVRVKKTSVPRFRAGQGFKDLVSGSKK 93
>gi|71083518|ref|YP_266237.1| non-specific DNA-binding protein HBsu [Candidatus Pelagibacter
ubique HTCC1062]
gi|91762063|ref|ZP_01264028.1| non-specific DNA-binding protein HBsu [Candidatus Pelagibacter
ubique HTCC1002]
gi|71062631|gb|AAZ21634.1| non-specific DNA-binding protein HBsu [Candidatus Pelagibacter
ubique HTCC1062]
gi|91717865|gb|EAS84515.1| non-specific DNA-binding protein HBsu [Candidatus Pelagibacter
ubique HTCC1002]
Length = 91
Score = 83.7 bits (206), Expect = 9e-15, Method: Composition-based stats.
Identities = 28/92 (30%), Positives = 41/92 (44%), Gaps = 1/92 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K LI ++ L+ D E+ + + + AL V+I GFG++ V KR AR+
Sbjct: 1 MNKKQLIAQLSGSL-NLSKADAERTFDTITNTILDALKGDDTVKIAGFGTYKVAKRKARV 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P + I + F K LKE N
Sbjct: 60 GRNPRTGEQIQIGASQKVKFLPAKALKEIFNK 91
>gi|86138658|ref|ZP_01057231.1| integration host factor, alpha subunit [Roseobacter sp. MED193]
gi|85824718|gb|EAQ44920.1| integration host factor, alpha subunit [Roseobacter sp. MED193]
Length = 92
Score = 83.7 bits (206), Expect = 9e-15, Method: Composition-based stats.
Identities = 25/86 (29%), Positives = 49/86 (56%), Gaps = 1/86 (1%)
Query: 5 SLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLARAP 64
L + ++ L+ + ++V +L+ M+ AL G +V+I FG+FSVR ++AR+ R P
Sbjct: 2 DLSEAVFRE-VGLSRNESAQLVESMLQHMSDALVQGEQVKISSFGTFSVRDKSARIGRNP 60
Query: 65 LAQKVISVEEKMVPFFRAGKNLKERL 90
+ + ++ + V FR +K+R+
Sbjct: 61 KTGEEVPIQPRRVLTFRPSHLMKDRV 86
>gi|254510042|ref|ZP_05122109.1| integration host factor, alpha subunit [Rhodobacteraceae
bacterium KLH11]
gi|221533753|gb|EEE36741.1| integration host factor, alpha subunit [Rhodobacteraceae
bacterium KLH11]
Length = 100
Score = 83.7 bits (206), Expect = 9e-15, Method: Composition-based stats.
Identities = 25/89 (28%), Positives = 48/89 (53%), Gaps = 1/89 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
+ L + ++ L+ + ++V +L M+ AL G +V+I FG+FSVR + AR+
Sbjct: 7 TRMDLSEAVFRE-VGLSRNESAQLVESVLNHMSDALVRGEQVKISSFGTFSVRDKTARIG 65
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P + + ++ + V FR +K+R+
Sbjct: 66 RNPKTGEEVPIQPRRVLTFRPSHLMKDRV 94
>gi|15643036|ref|NP_228079.1| DNA-binding protein, HU [Thermotoga maritima MSB8]
gi|6226592|sp|P36206|DBH_THEMA RecName: Full=DNA-binding protein HU
gi|4980764|gb|AAD35355.1|AE001709_1 DNA-binding protein, HU [Thermotoga maritima MSB8]
Length = 90
Score = 83.7 bits (206), Expect = 9e-15, Method: Composition-based stats.
Identities = 42/91 (46%), Positives = 59/91 (64%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K LI +AKK +DV+ I++ +LE +T+ALA G +V+I GFGSF VRK AAR
Sbjct: 1 MTKKELIDRVAKKAGA-KKKDVKLILDTILETITEALAKGEKVQIVGFGSFEVRKAAARK 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
P +K I++ E+ VP F+ GK LKE++
Sbjct: 60 GVNPQTRKPITIPERKVPKFKPGKALKEKVK 90
>gi|85716272|ref|ZP_01047246.1| integration host factor, alpha subunit [Nitrobacter sp. Nb-311A]
gi|85696944|gb|EAQ34828.1| integration host factor, alpha subunit [Nitrobacter sp. Nb-311A]
Length = 106
Score = 83.3 bits (205), Expect = 9e-15, Method: Composition-based stats.
Identities = 28/92 (30%), Positives = 46/92 (50%), Gaps = 1/92 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
+ L + KK L+ + V ++L+E+T L G V++ FGSF VRK+ R+
Sbjct: 9 TRVDLCEAVYKK-VGLSRTESSAFVELVLKEITDCLEKGETVKLSSFGSFMVRKKGQRIG 67
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLNSP 93
R P + + + V F+ LK+R+NS
Sbjct: 68 RNPKTGTEVPISPRRVMVFKPSAILKQRINSN 99
>gi|315634292|ref|ZP_07889579.1| integration host factor subunit alpha [Aggregatibacter segnis
ATCC 33393]
gi|315476882|gb|EFU67627.1| integration host factor subunit alpha [Aggregatibacter segnis
ATCC 33393]
Length = 98
Score = 83.3 bits (205), Expect = 9e-15, Method: Composition-based stats.
Identities = 25/95 (26%), Positives = 47/95 (49%), Gaps = 1/95 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K L + +K L+ ++ + +V EE+ AL G V++ GFG+F +R +++R
Sbjct: 4 TKVELAENLIEKF-HLSKREAKDLVESFFEEIRIALETGNDVKLSGFGNFELRDKSSRPG 62
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDST 96
R P + + V + V F+ G+ L+ R+
Sbjct: 63 RNPKTGESVPVSARRVVVFKPGQKLRNRVEKVKPK 97
>gi|255263450|ref|ZP_05342792.1| integration host factor, alpha subunit [Thalassiobium sp. R2A62]
gi|255105785|gb|EET48459.1| integration host factor, alpha subunit [Thalassiobium sp. R2A62]
Length = 100
Score = 83.3 bits (205), Expect = 9e-15, Method: Composition-based stats.
Identities = 26/89 (29%), Positives = 48/89 (53%), Gaps = 1/89 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
+ L + + L+ D ++V +L M+ AL G +V+I FG+F+VR++AAR+
Sbjct: 7 TRMDLSEAVFNE-VGLSRNDSAQLVESVLGHMSDALVKGEQVKISSFGTFAVREKAARVG 65
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P + + + + V FR +K+R+
Sbjct: 66 RNPKTGEEVPIHPRRVLTFRPSHLMKDRV 94
>gi|239928724|ref|ZP_04685677.1| histone-like DNA binding protein [Streptomyces ghanaensis ATCC
14672]
gi|291437048|ref|ZP_06576438.1| DNA-binding protein HU 2 [Streptomyces ghanaensis ATCC 14672]
gi|291339943|gb|EFE66899.1| DNA-binding protein HU 2 [Streptomyces ghanaensis ATCC 14672]
Length = 212
Score = 83.3 bits (205), Expect = 9e-15, Method: Composition-based stats.
Identities = 32/95 (33%), Positives = 49/95 (51%), Gaps = 2/95 (2%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ L+ IA K Q V+ +L+ + +A+ G RV + GFGSF R AR
Sbjct: 1 MNKAQLVEAIADKMGG--RQQAADAVDAVLDAIVRAVVAGDRVSVTGFGSFEKVDRPARY 58
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDS 95
AR P + + V++ VP FRAG+ K+ ++
Sbjct: 59 ARNPQTGERVRVKKTSVPRFRAGQGFKDLVSGSKK 93
>gi|306820791|ref|ZP_07454416.1| DNA-binding protein HU [Eubacterium yurii subsp. margaretiae ATCC
43715]
gi|304551181|gb|EFM39147.1| DNA-binding protein HU [Eubacterium yurii subsp. margaretiae ATCC
43715]
Length = 102
Score = 83.3 bits (205), Expect = 9e-15, Method: Composition-based stats.
Identities = 35/97 (36%), Positives = 54/97 (55%), Gaps = 2/97 (2%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ L+ IA+K+ L +D E +N + + +AL +V++ GFG+F R+RAAR
Sbjct: 1 MNKADLVSKIAEKS-GLTKKDSETALNAFMASVEEALVKQEKVQLVGFGTFETRERAARE 59
Query: 61 ARAPLAQK-VISVEEKMVPFFRAGKNLKERLNSPDST 96
R P K I + P F+AGK LKE++N+
Sbjct: 60 GRNPRDPKVKIKIPASKAPVFKAGKGLKEKVNASAGK 96
>gi|239918394|ref|YP_002957952.1| bacterial nucleoid DNA-binding protein [Micrococcus luteus NCTC
2665]
gi|289707035|ref|ZP_06503366.1| DNA-binding protein HU [Micrococcus luteus SK58]
gi|239839601|gb|ACS31398.1| bacterial nucleoid DNA-binding protein [Micrococcus luteus NCTC
2665]
gi|289556221|gb|EFD49581.1| DNA-binding protein HU [Micrococcus luteus SK58]
Length = 93
Score = 83.3 bits (205), Expect = 9e-15, Method: Composition-based stats.
Identities = 20/89 (22%), Positives = 37/89 (41%), Gaps = 1/89 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M + L+ +A+++ V +++ L E T + G +V I G+ + +R R
Sbjct: 3 MNRKELVAAVAERSGN-TQAAVSDVLDALFEVFTAQVKKGEKVSIPGWLAVERTERKERT 61
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKER 89
R P + I++ AG LK
Sbjct: 62 GRNPRTGEEITIPAGHSVKVTAGSKLKAA 90
>gi|224369016|ref|YP_002603180.1| hypothetical protein HRM2_19150 [Desulfobacterium autotrophicum
HRM2]
gi|223691733|gb|ACN15016.1| hypothetical protein HRM2_19150 [Desulfobacterium autotrophicum
HRM2]
Length = 76
Score = 83.3 bits (205), Expect = 9e-15, Method: Composition-based stats.
Identities = 27/75 (36%), Positives = 44/75 (58%)
Query: 17 LNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLARAPLAQKVISVEEKM 76
+ + ++V + + + ALANG RVEIRG SF V+ + + R P + + + K
Sbjct: 1 MTREGAAEVVEIFFDSLIDALANGDRVEIRGLCSFHVKDYKSYIGRNPKTGERVLIPGKK 60
Query: 77 VPFFRAGKNLKERLN 91
+PFF+AGK LKE ++
Sbjct: 61 LPFFKAGKELKEGVD 75
>gi|212703101|ref|ZP_03311229.1| hypothetical protein DESPIG_01140 [Desulfovibrio piger ATCC
29098]
gi|212673367|gb|EEB33850.1| hypothetical protein DESPIG_01140 [Desulfovibrio piger ATCC
29098]
Length = 97
Score = 83.3 bits (205), Expect = 9e-15, Method: Composition-based stats.
Identities = 24/91 (26%), Positives = 41/91 (45%), Gaps = 5/91 (5%)
Query: 1 MIKSSLIGTIAKKNP-----KLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRK 55
M K L+ + +++ L DVE ++ L + Q L GG V + G G +
Sbjct: 1 MTKEDLVRNVTERSRIHLGRSLCQADVEAVLQALKDVTAQELTAGGEVPLPGLGKLKTKD 60
Query: 56 RAARLARAPLAQKVISVEEKMVPFFRAGKNL 86
RAAR+ R P + +++ + V F + L
Sbjct: 61 RAARMGRNPRTGEAVTIPARRVVVFAPSEKL 91
>gi|92117139|ref|YP_576868.1| integration host factor subunit alpha [Nitrobacter hamburgensis
X14]
gi|123265314|sp|Q1QMY9|IHFA_NITHX RecName: Full=Integration host factor subunit alpha;
Short=IHF-alpha
gi|91800033|gb|ABE62408.1| integration host factor, alpha subunit [Nitrobacter hamburgensis
X14]
Length = 110
Score = 83.3 bits (205), Expect = 9e-15, Method: Composition-based stats.
Identities = 27/94 (28%), Positives = 46/94 (48%), Gaps = 1/94 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
+ L + KK L+ + V ++L+E+T L G V++ FGSF VRK+ R+
Sbjct: 9 TRVDLCEAVYKK-VGLSRTESSAFVELVLKEITDCLEKGETVKLSSFGSFMVRKKGQRIG 67
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDS 95
R P + + + V F+ LK+R+N +
Sbjct: 68 RNPKTGTEVPISPRRVMVFKPSAILKQRINGNSN 101
>gi|271964928|ref|YP_003339124.1| hypothetical protein Sros_3445 [Streptosporangium roseum DSM
43021]
gi|270508103|gb|ACZ86381.1| conserved hypothetical protein [Streptosporangium roseum DSM
43021]
Length = 106
Score = 83.3 bits (205), Expect = 9e-15, Method: Composition-based stats.
Identities = 22/86 (25%), Positives = 35/86 (40%), Gaps = 1/86 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K LI A L+ + + +L + A+A +V I GFGSF + + AR
Sbjct: 12 MNKRELIEK-AAAEAGLSRRQTAAALEAILGTIQTAVAAEDKVAIPGFGSFEIVHKPART 70
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNL 86
R P + + + E F+
Sbjct: 71 GRNPQTGEPLEIAETWTAKFKPSPGF 96
>gi|150010179|ref|YP_001304922.1| DNA-binding protein HU-beta [Parabacteroides distasonis ATCC
8503]
gi|255012559|ref|ZP_05284685.1| DNA-binding protein HU-beta [Bacteroides sp. 2_1_7]
gi|256839002|ref|ZP_05544512.1| integration host factor, alpha subunit [Parabacteroides sp. D13]
gi|262382532|ref|ZP_06075669.1| DNA-binding protein HU-beta [Bacteroides sp. 2_1_33B]
gi|298374554|ref|ZP_06984512.1| DNA-binding protein HU [Bacteroides sp. 3_1_19]
gi|301308227|ref|ZP_07214181.1| DNA-binding protein HU [Bacteroides sp. 20_3]
gi|149938603|gb|ABR45300.1| DNA-binding protein HU-beta [Parabacteroides distasonis ATCC
8503]
gi|256739921|gb|EEU53245.1| integration host factor, alpha subunit [Parabacteroides sp. D13]
gi|262295410|gb|EEY83341.1| DNA-binding protein HU-beta [Bacteroides sp. 2_1_33B]
gi|298268922|gb|EFI10577.1| DNA-binding protein HU [Bacteroides sp. 3_1_19]
gi|300833697|gb|EFK64313.1| DNA-binding protein HU [Bacteroides sp. 20_3]
Length = 90
Score = 83.3 bits (205), Expect = 9e-15, Method: Composition-based stats.
Identities = 31/91 (34%), Positives = 50/91 (54%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS I +A+K+ L+ D +K V ++ ++ L GG+V + GFGSFSV ++AAR
Sbjct: 1 MNKSEFISAVAEKS-GLSKVDAKKAVEAFVDTVSNELKEGGKVALLGFGSFSVSEKAARK 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
P ++ I + + F+AG L E +
Sbjct: 60 GVNPKTKETIEIAARKAVKFKAGAELNELIK 90
>gi|313829872|gb|EFS67586.1| DNA-binding protein HU [Propionibacterium acnes HL007PA1]
Length = 91
Score = 83.3 bits (205), Expect = 1e-14, Method: Composition-based stats.
Identities = 26/90 (28%), Positives = 42/90 (46%), Gaps = 1/90 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI T+A K L + V L +++T ALA G +V++ G + +R AR
Sbjct: 1 MTKSELIKTVA-KQASLTEAQTNEAVKALTDDITAALAKGEKVQLPGLFTAETVERPARN 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P + +++ A LK+ +
Sbjct: 60 GRNPRTGESMTIPAHKAVKISASSTLKKAV 89
>gi|322436189|ref|YP_004218401.1| histone family protein DNA-binding protein [Acidobacterium sp.
MP5ACTX9]
gi|321163916|gb|ADW69621.1| histone family protein DNA-binding protein [Acidobacterium sp.
MP5ACTX9]
Length = 93
Score = 83.3 bits (205), Expect = 1e-14, Method: Composition-based stats.
Identities = 27/84 (32%), Positives = 42/84 (50%), Gaps = 1/84 (1%)
Query: 3 KSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLAR 62
K LI + ++ L E V+ + E M Q+L G R+E+RGFG F+V+ R + R
Sbjct: 7 KQDLIQRVVERT-GLVRTKAEAAVDAIFESMKQSLVEGERIELRGFGVFTVKPRKTGVGR 65
Query: 63 APLAQKVISVEEKMVPFFRAGKNL 86
P +S+ F+ GK+L
Sbjct: 66 NPRTGAEVSIAPGKAVRFKPGKDL 89
>gi|237737109|ref|ZP_04567590.1| predicted protein [Fusobacterium mortiferum ATCC 9817]
gi|229420971|gb|EEO36018.1| predicted protein [Fusobacterium mortiferum ATCC 9817]
Length = 92
Score = 83.3 bits (205), Expect = 1e-14, Method: Composition-based stats.
Identities = 30/92 (32%), Positives = 41/92 (44%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K + +K D EK L + + L G + GFG F V +RAAR
Sbjct: 1 MTKKEFVDLYFQKGEFTTKVDAEKKAMAFLATIEEVLEKGDEISFLGFGKFEVTERAART 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P + + VE K F+AGK L E++N
Sbjct: 61 CRNPQTGEEMKVEAKKAVKFKAGKALSEKVNK 92
>gi|239616737|ref|YP_002940059.1| histone family protein DNA-binding protein [Kosmotoga olearia TBF
19.5.1]
gi|239505568|gb|ACR79055.1| histone family protein DNA-binding protein [Kosmotoga olearia TBF
19.5.1]
Length = 90
Score = 83.3 bits (205), Expect = 1e-14, Method: Composition-based stats.
Identities = 30/91 (32%), Positives = 48/91 (52%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K L+ IA + + + +I++ +E + + L+ G V++ GFG+F V R R
Sbjct: 1 MNKKELVAEIAGRT-GVTKKRAAEILDCFIEIVGEKLSKGEEVKLVGFGTFEVATRKPRK 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
P +K I + VP FRAGK LKE++
Sbjct: 60 GVNPRTKKPIKIPGGKVPKFRAGKELKEKVK 90
>gi|317055654|ref|YP_004104121.1| histone family protein DNA-binding protein [Ruminococcus albus 7]
gi|315447923|gb|ADU21487.1| histone family protein DNA-binding protein [Ruminococcus albus 7]
Length = 92
Score = 83.3 bits (205), Expect = 1e-14, Method: Composition-based stats.
Identities = 34/93 (36%), Positives = 55/93 (59%), Gaps = 1/93 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ L+ IA+KN ++ E ++ ++ +T+AL G +V I GFG+F VR RAA+
Sbjct: 1 MKKAELLAAIAEKN-GSTKKNAEAALDAVISTITEALEKGEKVAIPGFGTFEVRDRAAKK 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSP 93
+ P ++ I V K VP F+A K LK+ ++
Sbjct: 60 SINPATKEPIDVPAKKVPAFKAAKALKDAVDKK 92
>gi|319794585|ref|YP_004156225.1| histone family protein DNA-binding protein [Variovorax paradoxus
EPS]
gi|315597048|gb|ADU38114.1| histone family protein DNA-binding protein [Variovorax paradoxus
EPS]
Length = 123
Score = 83.3 bits (205), Expect = 1e-14, Method: Composition-based stats.
Identities = 27/89 (30%), Positives = 46/89 (51%), Gaps = 1/89 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ L + ++ LN ++ + +V E + +L G V+I GFG+F +R +A R
Sbjct: 17 TKAHLADLLFEQI-GLNKRESKDMVEAFFELVASSLIEGTDVKISGFGNFQIRVKAPRPG 75
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P + I + E+ V F A LKE++
Sbjct: 76 RNPRTGEAIPIGERRVATFHASAKLKEQI 104
>gi|218264602|ref|ZP_03478390.1| hypothetical protein PRABACTJOHN_04096 [Parabacteroides johnsonii
DSM 18315]
gi|218221888|gb|EEC94538.1| hypothetical protein PRABACTJOHN_04096 [Parabacteroides johnsonii
DSM 18315]
Length = 91
Score = 83.3 bits (205), Expect = 1e-14, Method: Composition-based stats.
Identities = 31/91 (34%), Positives = 50/91 (54%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ I +A+K+ L+ D +K V +E ++ L GG+V + GFGSFSV ++AAR
Sbjct: 2 MNKTEFINAVAEKS-GLSKVDAKKAVEAFVETVSSELKEGGKVALLGFGSFSVAEKAARK 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
P ++ I + + F+AG L E +
Sbjct: 61 GVNPKTKQPIEIPARKSVKFKAGAELTEIIK 91
>gi|307719533|ref|YP_003875065.1| DNA-binding protein HbbU [Spirochaeta thermophila DSM 6192]
gi|306533258|gb|ADN02792.1| DNA-binding protein HbbU [Spirochaeta thermophila DSM 6192]
Length = 102
Score = 83.3 bits (205), Expect = 1e-14, Method: Composition-based stats.
Identities = 30/90 (33%), Positives = 54/90 (60%), Gaps = 2/90 (2%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAAR-L 60
K+ ++ I+ ++ L+ +D++ +++ E+ +AL G VE+RGFG+F +R R R
Sbjct: 9 TKAQIVENIS-QHCDLSKKDIQFVIDSFFSEVKRALVEGKTVELRGFGTFEIRVRKGRDR 67
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
AR P +++ VE+ V FR GK LK+ +
Sbjct: 68 ARNPKTGEIVKVEDHGVAVFRPGKELKDSV 97
>gi|16126202|ref|NP_420766.1| DNA-binding protein HU [Caulobacter crescentus CB15]
gi|221234973|ref|YP_002517409.1| DNA-binding protein HU [Caulobacter crescentus NA1000]
gi|239977107|sp|B8GX11|DBH_CAUCN RecName: Full=DNA-binding protein HU
gi|239977108|sp|P0CAV2|DBH_CAUCR RecName: Full=DNA-binding protein HU
gi|13423420|gb|AAK23934.1| DNA-binding protein HU [Caulobacter crescentus CB15]
gi|220964145|gb|ACL95501.1| DNA-binding protein HU [Caulobacter crescentus NA1000]
Length = 92
Score = 83.3 bits (205), Expect = 1e-14, Method: Composition-based stats.
Identities = 28/91 (30%), Positives = 45/91 (49%), Gaps = 1/91 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ L+ IA+K +N + + +E +T +L +G V + GFG+F RAA A
Sbjct: 3 TKAELVTAIAEK-AGINKNQAKDALEAFIEAVTDSLKSGQDVRLVGFGTFKAVTRAAGTA 61
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P + ++ F+ G+ LK LNS
Sbjct: 62 RNPRTGETVNRPASKTARFQVGEGLKSSLNS 92
>gi|332288957|ref|YP_004419809.1| transcriptional regulator HU subunit alpha [Gallibacterium anatis
UMN179]
gi|330431853|gb|AEC16912.1| transcriptional regulator HU subunit alpha [Gallibacterium anatis
UMN179]
Length = 90
Score = 83.3 bits (205), Expect = 1e-14, Method: Composition-based stats.
Identities = 33/91 (36%), Positives = 51/91 (56%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ L+ IA+K KL+ +D + + LE +T++L G V++ GFG+F V +R R
Sbjct: 1 MNKTELVDVIAEKT-KLSKKDSKAALEAALEAITESLKAGDAVQLIGFGTFKVNQRQERT 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P K I + VP F +GK LK+ +
Sbjct: 60 GRNPQTGKEIKIPATKVPAFVSGKALKDAVK 90
>gi|313499440|gb|ADR60806.1| IhfA [Pseudomonas putida BIRD-1]
Length = 92
Score = 83.3 bits (205), Expect = 1e-14, Method: Composition-based stats.
Identities = 25/90 (27%), Positives = 47/90 (52%), Gaps = 1/90 (1%)
Query: 7 IGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLARAPLA 66
+ ++ LN ++ +++V + EE+ AL +V++ GFG+F +R + R R P
Sbjct: 2 AERLYEEL-GLNKREAKELVELFFEEIRHALEENEQVKLSGFGNFDLRDKRQRPGRNPKT 60
Query: 67 QKVISVEEKMVPFFRAGKNLKERLNSPDST 96
+ I + + V FR G+ LK R+ + T
Sbjct: 61 GEEIPITARRVVTFRPGQKLKARVEAYAGT 90
>gi|149914952|ref|ZP_01903481.1| integration host factor, alpha subunit [Roseobacter sp. AzwK-3b]
gi|149811140|gb|EDM70977.1| integration host factor, alpha subunit [Roseobacter sp. AzwK-3b]
Length = 92
Score = 83.3 bits (205), Expect = 1e-14, Method: Composition-based stats.
Identities = 26/92 (28%), Positives = 51/92 (55%), Gaps = 1/92 (1%)
Query: 5 SLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLARAP 64
L + ++ L+ D ++V +L M+ AL G +V+I FG+FSVR+++AR+ R P
Sbjct: 2 DLSEAVFRE-VGLSRNDSAELVESVLAHMSDALVRGEQVKISSFGTFSVREKSARVGRNP 60
Query: 65 LAQKVISVEEKMVPFFRAGKNLKERLNSPDST 96
+ + + + V FR +K+R++ + +
Sbjct: 61 KTGEEVPINPRRVLTFRPSHLMKDRVSDGNKS 92
>gi|251771160|gb|EES51742.1| histone family protein DNA-binding protein [Leptospirillum
ferrodiazotrophum]
Length = 98
Score = 83.3 bits (205), Expect = 1e-14, Method: Composition-based stats.
Identities = 35/93 (37%), Positives = 51/93 (54%), Gaps = 1/93 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI +A K+ KL+ +DV +V+ L+ + ++ G +V I GFG+F R AR
Sbjct: 1 MNKTELIEKVA-KSSKLSKKDVHAVVDGFLKSIEASMKKGEKVTIVGFGTFGTVSRKART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSP 93
R P K I + K P F GK L+E +NS
Sbjct: 60 GRNPKTGKEIKIAAKTAPKFSPGKALRESVNSK 92
>gi|110633500|ref|YP_673708.1| integration host factor subunit alpha [Mesorhizobium sp. BNC1]
gi|123058057|sp|Q11J82|IHFA_MESSB RecName: Full=Integration host factor subunit alpha;
Short=IHF-alpha
gi|110284484|gb|ABG62543.1| integration host factor, alpha subunit [Chelativorans sp. BNC1]
Length = 111
Score = 83.3 bits (205), Expect = 1e-14, Method: Composition-based stats.
Identities = 24/89 (26%), Positives = 47/89 (52%), Gaps = 1/89 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
++ L + +K L+ + +IV M+L+E+ A+ G V++ F +F VR++ R+
Sbjct: 7 TRADLAEAVYRK-VGLSRTESAQIVEMVLQEVCDAIVRGETVKLSSFATFQVREKNERVG 65
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P + + + + V F+A LK R+
Sbjct: 66 RNPKTGEEVPISPRRVMTFKASNVLKSRI 94
>gi|302878220|ref|YP_003846784.1| integration host factor, alpha subunit [Gallionella
capsiferriformans ES-2]
gi|302581009|gb|ADL55020.1| integration host factor, alpha subunit [Gallionella
capsiferriformans ES-2]
Length = 101
Score = 83.3 bits (205), Expect = 1e-14, Method: Composition-based stats.
Identities = 23/92 (25%), Positives = 40/92 (43%), Gaps = 1/92 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ L + +K LN ++ + +V EE+ L V++ GFG+F +R + R
Sbjct: 4 TKAELADLLFEK-VGLNKREAKDMVEAFFEEIRVKLEQSEEVKLSGFGNFQLRDKQQRPG 62
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLNSP 93
R P + I + + V F LK +
Sbjct: 63 RNPKTGEEIPISARRVVTFHPSAKLKNLVEKN 94
>gi|281412322|ref|YP_003346401.1| histone family protein DNA-binding protein [Thermotoga
naphthophila RKU-10]
gi|281373425|gb|ADA66987.1| histone family protein DNA-binding protein [Thermotoga
naphthophila RKU-10]
Length = 90
Score = 83.3 bits (205), Expect = 1e-14, Method: Composition-based stats.
Identities = 42/91 (46%), Positives = 58/91 (63%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K LI +AKK +DV I++ +LE +T+ALA G +V+I GFGSF VRK AAR
Sbjct: 1 MNKKELIDRVAKKAGA-KKKDVRVILDTILETITEALAKGEKVQIVGFGSFEVRKAAARK 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
P +K I++ E+ VP F+ GK LKE++
Sbjct: 60 GVNPQTRKPITIPERKVPKFKPGKALKEKVK 90
>gi|171909880|ref|ZP_02925350.1| putative integration host factor alpha-subunit [Verrucomicrobium
spinosum DSM 4136]
Length = 104
Score = 83.3 bits (205), Expect = 1e-14, Method: Composition-based stats.
Identities = 22/90 (24%), Positives = 41/90 (45%), Gaps = 2/90 (2%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K L+ ++ + L + L+ +T+ LA G V +R FG+F VR ++
Sbjct: 5 TKRDLVVELSNRT-GLTQSQAFDLFQQALDLITEELAKGNEVTLRRFGTFEVRVTKPKIG 63
Query: 62 RAP-LAQKVISVEEKMVPFFRAGKNLKERL 90
R P + + + V F+ GK +K ++
Sbjct: 64 RNPNKPGSEMQIPPRTVVRFKPGKEMKAQV 93
>gi|148259288|ref|YP_001233415.1| integration host factor, alpha subunit [Acidiphilium cryptum
JF-5]
gi|326402443|ref|YP_004282524.1| integration host factor alpha subunit [Acidiphilium multivorum
AIU301]
gi|146400969|gb|ABQ29496.1| integration host factor, alpha subunit [Acidiphilium cryptum
JF-5]
gi|325049304|dbj|BAJ79642.1| integration host factor alpha subunit [Acidiphilium multivorum
AIU301]
Length = 104
Score = 83.3 bits (205), Expect = 1e-14, Method: Composition-based stats.
Identities = 25/90 (27%), Positives = 49/90 (54%), Gaps = 1/90 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
++ L +I L+ + ++ +L+ M QALA G ++I GFG+FSVR++ R+
Sbjct: 5 TRAGLAESIYAA-VGLSRNESAALLEAVLDRMKQALAEGESIKISGFGTFSVRQKGRRIG 63
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + + + + V FR + L++ ++
Sbjct: 64 RNPKTGREVPILPRRVLVFRPSQILRDAVD 93
>gi|330466240|ref|YP_004403983.1| histone family protein DNA-binding protein [Verrucosispora maris
AB-18-032]
gi|328809211|gb|AEB43383.1| histone family protein DNA-binding protein [Verrucosispora maris
AB-18-032]
Length = 219
Score = 83.3 bits (205), Expect = 1e-14, Method: Composition-based stats.
Identities = 30/90 (33%), Positives = 46/90 (51%), Gaps = 2/90 (2%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI +A + + ++ +L E+ A+ G +V I GFG+F R R AR
Sbjct: 1 MNKAELIEALAVRLGD--RKTATAALDAVLAEVQAAVTKGEKVAITGFGAFEKRVRGART 58
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
AR P + + V++ VP FR G KE +
Sbjct: 59 ARNPRTGEAVKVKKTSVPTFRPGAGFKEMV 88
>gi|302039381|ref|YP_003799703.1| integration host factor subunit alpha [Candidatus Nitrospira
defluvii]
gi|300607445|emb|CBK43778.1| Integration host factor, alpha subunit [Candidatus Nitrospira
defluvii]
Length = 91
Score = 83.3 bits (205), Expect = 1e-14, Method: Composition-based stats.
Identities = 29/92 (31%), Positives = 45/92 (48%), Gaps = 1/92 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ + I K ++ D IV ++L + L G V+I GFG+F VR + AR
Sbjct: 1 MRKADIANEIF-KQVGVSKNDAADIVELVLNLLKGVLQKGDAVKIAGFGNFVVRSKGARK 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P + I + + V FR + K+ +NS
Sbjct: 60 GRNPRTGEEIGITPRRVVTFRPSQVFKKYVNS 91
>gi|167036347|ref|YP_001671578.1| histone family protein DNA-binding protein [Pseudomonas putida
GB-1]
gi|166862835|gb|ABZ01243.1| histone family protein DNA-binding protein [Pseudomonas putida
GB-1]
Length = 101
Score = 83.3 bits (205), Expect = 1e-14, Method: Composition-based stats.
Identities = 29/91 (31%), Positives = 47/91 (51%), Gaps = 2/91 (2%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K L IA+K L + +++N +L+ +T AL V + GFG+F R R AR
Sbjct: 1 MRKPELAAVIAEK-ADLTKEKANQVLNAILDSITGALDK-DTVTLVGFGTFEKRHRGART 58
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
+ P + + ++ F+ GKNLK+ +N
Sbjct: 59 GKNPQTGEPVKIKASNTVAFKPGKNLKDSVN 89
>gi|269925821|ref|YP_003322444.1| histone family protein DNA-binding protein [Thermobaculum
terrenum ATCC BAA-798]
gi|269789481|gb|ACZ41622.1| histone family protein DNA-binding protein [Thermobaculum
terrenum ATCC BAA-798]
Length = 84
Score = 82.9 bits (204), Expect = 1e-14, Method: Composition-based stats.
Identities = 26/82 (31%), Positives = 41/82 (50%), Gaps = 1/82 (1%)
Query: 3 KSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLAR 62
K+ LI +A++ + V+K+ +L E+ +L G V IRGFG+F V +R+ R R
Sbjct: 4 KTELINQVAERT-GMTKSQVQKVFEEMLSEIRSSLEKGEDVIIRGFGTFKVTERSPRKGR 62
Query: 63 APLAQKVISVEEKMVPFFRAGK 84
P + I + FR K
Sbjct: 63 NPRTGEEIEIPGGKRVTFRMSK 84
>gi|283956256|ref|ZP_06373736.1| DNA-binding protein HU [Campylobacter jejuni subsp. jejuni 1336]
gi|283791976|gb|EFC30765.1| DNA-binding protein HU [Campylobacter jejuni subsp. jejuni 1336]
Length = 98
Score = 82.9 bits (204), Expect = 1e-14, Method: Composition-based stats.
Identities = 33/99 (33%), Positives = 48/99 (48%), Gaps = 1/99 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ I +A + L +D + ++ +T LA G + GFG+FS ++RAAR
Sbjct: 1 MTKADFISLVA-QTAGLTKKDATTATDAVISTITDVLAKGDSISFIGFGTFSTQERAARE 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDSTLSN 99
AR P K I V V F+ GKNLKE + +
Sbjct: 60 ARVPSTGKTIKVPATRVAKFKVGKNLKEAVAKASNKKKK 98
>gi|325266870|ref|ZP_08133541.1| integration host factor subunit alpha [Kingella denitrificans
ATCC 33394]
gi|324981611|gb|EGC17252.1| integration host factor subunit alpha [Kingella denitrificans
ATCC 33394]
Length = 102
Score = 82.9 bits (204), Expect = 1e-14, Method: Composition-based stats.
Identities = 25/89 (28%), Positives = 46/89 (51%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ L + +K ++ + ++IV + EE+ LA G ++I GFG+F +R + R
Sbjct: 4 TKAELADILVEKVSSVSKTEAKEIVELFFEEIRSVLARGEEIKISGFGNFQLRNKPERPG 63
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P K +++ + V F A + LK +
Sbjct: 64 RNPKTGKEVAISARRVVTFHASQKLKGMV 92
>gi|159036797|ref|YP_001536050.1| histone family protein DNA-binding protein [Salinispora arenicola
CNS-205]
gi|157915632|gb|ABV97059.1| histone family protein DNA-binding protein [Salinispora arenicola
CNS-205]
Length = 209
Score = 82.9 bits (204), Expect = 1e-14, Method: Composition-based stats.
Identities = 30/90 (33%), Positives = 47/90 (52%), Gaps = 2/90 (2%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI ++A + + ++ +L E+ A+ G +V I GFG+F R R AR
Sbjct: 1 MNKAELIESLAVRLGD--RKTATAALDAVLTEVQAAVTKGEKVSITGFGAFEKRVRGART 58
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
AR P + + V++ VP FR G KE +
Sbjct: 59 ARNPRTGEAVKVKKTSVPTFRPGTGFKEMV 88
>gi|170288480|ref|YP_001738718.1| histone family protein DNA-binding protein [Thermotoga sp. RQ2]
gi|7245986|pdb|1B8Z|A Chain A, Hu From Thermotoga Maritima
gi|7245987|pdb|1B8Z|B Chain B, Hu From Thermotoga Maritima
gi|388071|gb|AAA27416.1| Hu DNA-binding protein [Thermotoga maritima]
gi|170175983|gb|ACB09035.1| histone family protein DNA-binding protein [Thermotoga sp. RQ2]
Length = 90
Score = 82.9 bits (204), Expect = 1e-14, Method: Composition-based stats.
Identities = 42/91 (46%), Positives = 59/91 (64%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K LI +AKK +DV+ I++ +LE +T+ALA G +V+I GFGSF VRK AAR
Sbjct: 1 MNKKELIDRVAKKAGA-KKKDVKLILDTILETITEALAKGEKVQIVGFGSFEVRKAAARK 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
P +K I++ E+ VP F+ GK LKE++
Sbjct: 60 GVNPQTRKPITIPERKVPKFKPGKALKEKVK 90
>gi|148658098|ref|YP_001278303.1| histone family protein DNA-binding protein [Roseiflexus sp. RS-1]
gi|148570208|gb|ABQ92353.1| bacterial nucleoid protein Hbs [Roseiflexus sp. RS-1]
Length = 92
Score = 82.9 bits (204), Expect = 1e-14, Method: Composition-based stats.
Identities = 29/91 (31%), Positives = 48/91 (52%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ I +A++ + ++ ++IV+ LE +T+AL G +V + GFG+F VR+R AR
Sbjct: 1 MQKTDFIKAVAER-ANRSQKETKEIVDAALEVITEALKRGEKVTLTGFGTFEVRQRQARE 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
P + I + P F A LK +
Sbjct: 60 GVNPQTRSKIQIPATKTPGFSASSTLKNAVK 90
>gi|16330050|ref|NP_440778.1| DNA binding protein HU [Synechocystis sp. PCC 6803]
gi|1652537|dbj|BAA17458.1| DNA binding protein HU [Synechocystis sp. PCC 6803]
Length = 135
Score = 82.9 bits (204), Expect = 1e-14, Method: Composition-based stats.
Identities = 25/95 (26%), Positives = 48/95 (50%), Gaps = 5/95 (5%)
Query: 1 MIKSSLIGTIAKKNPK-----LNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRK 55
M K L+ + K + + ++V+ +++ ++ + + +A G +V + GFGSF R+
Sbjct: 36 MNKGELVHAVTDKAKEQLGESITKKEVDAVISAAIDCIMEVVAEGEKVTLVGFGSFEARE 95
Query: 56 RAARLARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R R R P + + VP F AGK K+++
Sbjct: 96 RKEREGRNPKTGDKMLIPATKVPAFSAGKMFKDKV 130
>gi|94495282|ref|ZP_01301863.1| histone-like DNA-binding protein [Sphingomonas sp. SKA58]
gi|94425548|gb|EAT10568.1| histone-like DNA-binding protein [Sphingomonas sp. SKA58]
Length = 91
Score = 82.9 bits (204), Expect = 1e-14, Method: Composition-based stats.
Identities = 25/91 (27%), Positives = 41/91 (45%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M S L +A ++ + D K+V+ + + A A G + + GFG F V+ + AR
Sbjct: 1 MNNSDLAEALAAEH-DVTKADARKLVDAVFANIADAAAKGEEISLNGFGKFKVKDQPARE 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P I + F K +K++LN
Sbjct: 60 GRNPSTSATIQIAASKKLAFTPAKAVKDQLN 90
>gi|260914041|ref|ZP_05920514.1| integration host factor subunit alpha [Pasteurella dagmatis ATCC
43325]
gi|260631674|gb|EEX49852.1| integration host factor subunit alpha [Pasteurella dagmatis ATCC
43325]
Length = 98
Score = 82.9 bits (204), Expect = 1e-14, Method: Composition-based stats.
Identities = 28/95 (29%), Positives = 48/95 (50%), Gaps = 1/95 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K L + +K LN +D +++V EE+ AL G V++ GFG+F +R +A+R
Sbjct: 4 TKVELAENLIEKL-NLNKRDAKELVENFFEEIRVALETGEDVKLSGFGNFELRDKASRPG 62
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDST 96
R P + + V + V F+ G+ L+ R+
Sbjct: 63 RNPKTGESVPVSARRVVSFKPGQKLRTRVEKTKPK 97
>gi|163843049|ref|YP_001627453.1| integration host factor subunit alpha [Brucella suis ATCC 23445]
gi|189044695|sp|B0CLA3|IHFA_BRUSI RecName: Full=Integration host factor subunit alpha;
Short=IHF-alpha
gi|163673772|gb|ABY37883.1| integration host factor, alpha subunit [Brucella suis ATCC 23445]
Length = 107
Score = 82.9 bits (204), Expect = 1e-14, Method: Composition-based stats.
Identities = 24/89 (26%), Positives = 48/89 (53%), Gaps = 1/89 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
++ L+ + +K L+ + +V M+L+E+ A+ NG V++ F +F VR + R+
Sbjct: 7 TRADLVEAVYRK-VGLSRTESAALVEMILDEVCDAIVNGETVKLSSFATFQVRDKNERIG 65
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P + + + + V F+A LK+R+
Sbjct: 66 RNPKTGEEVPILPRRVMTFKASNVLKQRI 94
>gi|225874874|ref|YP_002756333.1| DNA-binding protein HU 1 [Acidobacterium capsulatum ATCC 51196]
gi|225793630|gb|ACO33720.1| DNA-binding protein HU 1 [Acidobacterium capsulatum ATCC 51196]
Length = 89
Score = 82.9 bits (204), Expect = 1e-14, Method: Composition-based stats.
Identities = 29/86 (33%), Positives = 44/86 (51%), Gaps = 1/86 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
MIK +I + ++ L E V+ + E + ALA G R+E+RGFG F+VR R +
Sbjct: 1 MIKQDIIHHVIERT-GLPRTKAEHAVDTVFESLKHALAEGQRIELRGFGVFNVRPRKTGI 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNL 86
R P +S+ F+ GK+L
Sbjct: 60 GRNPRTGTEVSITPGKAVRFKPGKDL 85
>gi|83942553|ref|ZP_00955014.1| integration host factor, alpha subunit [Sulfitobacter sp. EE-36]
gi|83953774|ref|ZP_00962495.1| integration host factor, alpha subunit [Sulfitobacter sp.
NAS-14.1]
gi|83841719|gb|EAP80888.1| integration host factor, alpha subunit [Sulfitobacter sp.
NAS-14.1]
gi|83846646|gb|EAP84522.1| integration host factor, alpha subunit [Sulfitobacter sp. EE-36]
Length = 100
Score = 82.9 bits (204), Expect = 1e-14, Method: Composition-based stats.
Identities = 26/89 (29%), Positives = 49/89 (55%), Gaps = 1/89 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
+ L + ++ L+ + ++V +LE M+ AL G +V+I FG+FSVR ++AR+
Sbjct: 7 TRMDLSEAVFRE-VGLSRNESAQLVEAVLEHMSDALVKGEQVKISSFGTFSVRDKSARVG 65
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P + + + + V FR +K+R+
Sbjct: 66 RNPKTGEEVPINPRRVLTFRPSHLMKDRV 94
>gi|313672997|ref|YP_004051108.1| histone family protein DNA-binding protein [Calditerrivibrio
nitroreducens DSM 19672]
gi|312939753|gb|ADR18945.1| histone family protein DNA-binding protein [Calditerrivibrio
nitroreducens DSM 19672]
Length = 92
Score = 82.9 bits (204), Expect = 1e-14, Method: Composition-based stats.
Identities = 25/93 (26%), Positives = 50/93 (53%), Gaps = 1/93 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ ++ I + ++ +D+ K+V+ + ++ + + V+I GFGSF V+ R R+
Sbjct: 1 MTKADIVDIIYE-TLGISKKDIYKVVDSVFNKIKDEILSKNNVKISGFGSFEVKTRGRRI 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSP 93
R P + +E + V F+ + LKE +N+
Sbjct: 60 GRNPKTGEEKVIEARTVVSFKPSRLLKEEVNAK 92
>gi|114569526|ref|YP_756206.1| histone family protein DNA-binding protein [Maricaulis maris
MCS10]
gi|114339988|gb|ABI65268.1| histone family protein DNA-binding protein [Maricaulis maris
MCS10]
Length = 88
Score = 82.9 bits (204), Expect = 1e-14, Method: Composition-based stats.
Identities = 24/88 (27%), Positives = 41/88 (46%), Gaps = 1/88 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS L +A+K L+ + V+ +E + ++ V+I GFG+F + R AR
Sbjct: 1 MNKSDLAKAVAEKT-GLSRAQAGEAVDSAIEAIVGSVKGNDSVQIAGFGTFYAKHREARE 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKE 88
R P + + + + FR LK+
Sbjct: 60 VRNPRTGETMMSKARTQAAFRPAAALKD 87
>gi|218259923|ref|ZP_03475438.1| hypothetical protein PRABACTJOHN_01099 [Parabacteroides johnsonii
DSM 18315]
gi|218224840|gb|EEC97490.1| hypothetical protein PRABACTJOHN_01099 [Parabacteroides johnsonii
DSM 18315]
Length = 99
Score = 82.9 bits (204), Expect = 1e-14, Method: Composition-based stats.
Identities = 26/93 (27%), Positives = 40/93 (43%), Gaps = 1/93 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M + I I + VE V LE ++ L G V I+ FGSF ++ +R
Sbjct: 1 MNRKD-IEKITAARLGVPVTTVEPFVQAFLETVSDCLMYGHHVTIQRFGSFRRWEQTSRP 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSP 93
R P + +E + F GK L E++N+
Sbjct: 60 VRNPRTGEPCMLEPRTSVKFNPGKTLFEKMNTD 92
>gi|148269794|ref|YP_001244254.1| histone family protein DNA-binding protein [Thermotoga petrophila
RKU-1]
gi|147735338|gb|ABQ46678.1| bacterial nucleoid protein Hbs [Thermotoga petrophila RKU-1]
Length = 90
Score = 82.9 bits (204), Expect = 1e-14, Method: Composition-based stats.
Identities = 41/91 (45%), Positives = 58/91 (63%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K LI +AKK +DV I++ +LE +++ALA G +V+I GFGSF VRK AAR
Sbjct: 1 MNKKELIDRVAKKAGA-KKKDVRVILDTILETISEALAKGEKVQIVGFGSFEVRKAAARK 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
P +K I++ E+ VP F+ GK LKE++
Sbjct: 60 GVNPQTRKPITIPERKVPKFKPGKALKEKVK 90
>gi|296282450|ref|ZP_06860448.1| integration host factor subunit alpha [Citromicrobium
bathyomarinum JL354]
Length = 100
Score = 82.9 bits (204), Expect = 1e-14, Method: Composition-based stats.
Identities = 26/89 (29%), Positives = 46/89 (51%), Gaps = 1/89 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
++ L TI +K + + +V +L M +L +G V+I GFGSF +R + R+
Sbjct: 9 TRADLAETINRKL-GFSRAESLALVESILAHMCDSLKDGENVKISGFGSFVLRDKKERVG 67
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P + + + V FRA + L++R+
Sbjct: 68 RNPKTGVEVPITPRRVMTFRASQTLRDRI 96
>gi|257463524|ref|ZP_05627917.1| DNA-binding protein HU [Fusobacterium sp. D12]
gi|317061080|ref|ZP_07925565.1| DNA-binding protein HU [Fusobacterium sp. D12]
gi|313686756|gb|EFS23591.1| DNA-binding protein HU [Fusobacterium sp. D12]
Length = 105
Score = 82.9 bits (204), Expect = 1e-14, Method: Composition-based stats.
Identities = 30/91 (32%), Positives = 40/91 (43%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K I AK + EK+V L + + L G V GFG F R AR
Sbjct: 1 MNKKDFIALFAKNAELKTKTEAEKLVAAFLNTVEETLVAGDGVAFMGFGKFETSVREART 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
P ++ + V K V F+AGK L E++N
Sbjct: 61 CVNPRTKEKMDVPAKKVVRFKAGKALAEKVN 91
>gi|315186666|gb|EFU20425.1| histone family protein DNA-binding protein [Spirochaeta
thermophila DSM 6578]
Length = 102
Score = 82.9 bits (204), Expect = 1e-14, Method: Composition-based stats.
Identities = 30/90 (33%), Positives = 54/90 (60%), Gaps = 2/90 (2%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL- 60
K+ ++ I+ ++ L+ +D++ +++ E+ +AL G VE+RGFG+F +R R R
Sbjct: 9 TKAQIVENIS-QHCDLSKKDIQFVIDSFFSEVKRALVEGKTVELRGFGTFEIRVRKGRER 67
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
AR P +++ VE+ V FR GK LK+ +
Sbjct: 68 ARNPKTGEIVKVEDHGVAVFRPGKELKDSV 97
>gi|313890818|ref|ZP_07824443.1| DNA-binding protein HU-beta [Streptococcus pseudoporcinus SPIN
20026]
gi|313120919|gb|EFR44033.1| DNA-binding protein HU-beta [Streptococcus pseudoporcinus SPIN
20026]
Length = 91
Score = 82.9 bits (204), Expect = 1e-14, Method: Composition-based stats.
Identities = 32/90 (35%), Positives = 47/90 (52%), Gaps = 1/90 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K LI +A+ L +D V+ + + LA G +V++ GFG+F VR+RAAR
Sbjct: 3 NKQDLIAKVAEAT-DLTKKDSAAAVDAVFAAIEGFLAEGEKVQLIGFGNFEVRERAARKG 61
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P I + VP F+AGK LK+ +
Sbjct: 62 RNPQTGAEIEIAASKVPAFKAGKALKDAVK 91
>gi|302035785|ref|YP_003796107.1| transcriptional dual regulator HU-alpha [Candidatus Nitrospira
defluvii]
gi|300603849|emb|CBK40181.1| Transcriptional dual regulator HU-alpha [Candidatus Nitrospira
defluvii]
Length = 90
Score = 82.9 bits (204), Expect = 1e-14, Method: Composition-based stats.
Identities = 26/91 (28%), Positives = 42/91 (46%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K LI +A + + + +T +L G RV + FG+F++ KR AR+
Sbjct: 1 MTKEELIAKMAN-SAGITKVAATVALEAFTGAVTTSLKKGKRVTLVNFGTFTISKRKARM 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + + + +P F AGK LK +
Sbjct: 60 GRNPRTGEALKIPAARIPKFSAGKELKAAVK 90
>gi|315121911|ref|YP_004062400.1| integration host factor, beta subunit [Candidatus Liberibacter
solanacearum CLso-ZC1]
gi|313495313|gb|ADR51912.1| integration host factor, beta subunit [Candidatus Liberibacter
solanacearum CLso-ZC1]
Length = 105
Score = 82.9 bits (204), Expect = 1e-14, Method: Composition-based stats.
Identities = 79/91 (86%), Positives = 89/91 (97%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
MIKSSLI TIAKKNP++N+QDVEK+VN+LLEEMT+ALANGGRVEIRGFG+FSVRKR+ARL
Sbjct: 1 MIKSSLIYTIAKKNPQINHQDVEKMVNLLLEEMTKALANGGRVEIRGFGTFSVRKRSARL 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
ARAPLAQKVISV+EKMVPFFR+GKNLKE LN
Sbjct: 61 ARAPLAQKVISVKEKMVPFFRSGKNLKECLN 91
>gi|238897899|ref|YP_002923578.1| integration host factor (IHF), DNA-binding protein, beta subunit
[Candidatus Hamiltonella defensa 5AT (Acyrthosiphon
pisum)]
gi|229465656|gb|ACQ67430.1| integration host factor (IHF), DNA-binding protein, beta subunit
[Candidatus Hamiltonella defensa 5AT (Acyrthosiphon
pisum)]
Length = 95
Score = 82.9 bits (204), Expect = 1e-14, Method: Composition-based stats.
Identities = 34/92 (36%), Positives = 54/92 (58%), Gaps = 1/92 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS + + K+ + + + +IV +L+ M++ L+ G R+EIRG GSFS+R R R
Sbjct: 1 MTKSDFVERLVKRLDSTDPEMIHEIVKRILQYMSEKLSEGERIEIRGLGSFSLRYRRPRT 60
Query: 61 ARAPLAQKV-ISVEEKMVPFFRAGKNLKERLN 91
AR P + V+ K V F+ GK L++R+N
Sbjct: 61 ARNPKTGDSGVKVKSKYVLHFKPGKKLRDRVN 92
>gi|154491895|ref|ZP_02031521.1| hypothetical protein PARMER_01522 [Parabacteroides merdae ATCC
43184]
gi|154088136|gb|EDN87181.1| hypothetical protein PARMER_01522 [Parabacteroides merdae ATCC
43184]
Length = 90
Score = 82.9 bits (204), Expect = 1e-14, Method: Composition-based stats.
Identities = 30/91 (32%), Positives = 50/91 (54%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ I +A+K+ L+ D +K V +E ++ L GG+V + GFGSFSV +++AR
Sbjct: 1 MNKTEFINAVAEKS-GLSKVDAKKAVEAFVETVSSELKEGGKVALLGFGSFSVAEKSARK 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
P ++ I + + F+AG L E +
Sbjct: 60 GVNPKTKQPIEIPARKSVKFKAGAELTEIIK 90
>gi|116624250|ref|YP_826406.1| histone family protein DNA-binding protein [Candidatus Solibacter
usitatus Ellin6076]
gi|116227412|gb|ABJ86121.1| histone family protein DNA-binding protein [Candidatus Solibacter
usitatus Ellin6076]
Length = 108
Score = 82.9 bits (204), Expect = 1e-14, Method: Composition-based stats.
Identities = 25/84 (29%), Positives = 39/84 (46%), Gaps = 1/84 (1%)
Query: 3 KSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLAR 62
K +I + + + E V + E M +AL G R+E+RGFG F+V+ R + R
Sbjct: 22 KLDIINEVVNRT-GITKTKAEMAVETVFESMKKALEQGDRIELRGFGVFNVKPRKTGIGR 80
Query: 63 APLAQKVISVEEKMVPFFRAGKNL 86
P +S+ F+ GK L
Sbjct: 81 NPRTGAEVSIPPGKAVRFKPGKEL 104
>gi|320106540|ref|YP_004182130.1| histone family protein DNA-binding protein [Terriglobus saanensis
SP1PR4]
gi|319925061|gb|ADV82136.1| histone family protein DNA-binding protein [Terriglobus saanensis
SP1PR4]
Length = 89
Score = 82.9 bits (204), Expect = 2e-14, Method: Composition-based stats.
Identities = 29/86 (33%), Positives = 47/86 (54%), Gaps = 1/86 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
MIK LI I ++ L E +++ + M +A+A+G R+E+RGFG F+V+ R +
Sbjct: 1 MIKQDLIQRIVDRS-GLPRTKAEAATDVIFDTMKKAMASGDRIELRGFGVFTVKPRKTGI 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNL 86
R P +S+E F+ GK+L
Sbjct: 60 GRNPRTGAEVSIEPGKAVRFKPGKDL 85
>gi|282861336|ref|ZP_06270401.1| histone family protein DNA-binding protein [Streptomyces sp.
ACTE]
gi|282563994|gb|EFB69531.1| histone family protein DNA-binding protein [Streptomyces sp.
ACTE]
Length = 218
Score = 82.5 bits (203), Expect = 2e-14, Method: Composition-based stats.
Identities = 32/95 (33%), Positives = 50/95 (52%), Gaps = 2/95 (2%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ L+ IA K Q V+++L+ + +A+ G RV + GFGSF R AR
Sbjct: 1 MNKAQLVEAIADKVGG--RQQAADAVDVVLDAIVRAVVAGDRVSVTGFGSFEKVDRPARY 58
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDS 95
AR P + + V++ VP FRAG+ K+ ++
Sbjct: 59 ARNPQTGERVRVKKTSVPRFRAGQGFKDLVSGSKK 93
>gi|160891545|ref|ZP_02072548.1| hypothetical protein BACUNI_03997 [Bacteroides uniformis ATCC
8492]
gi|270295354|ref|ZP_06201555.1| DNA-binding protein HU-beta [Bacteroides sp. D20]
gi|317478350|ref|ZP_07937514.1| bacterial DNA-binding protein [Bacteroides sp. 4_1_36]
gi|156858952|gb|EDO52383.1| hypothetical protein BACUNI_03997 [Bacteroides uniformis ATCC
8492]
gi|270274601|gb|EFA20462.1| DNA-binding protein HU-beta [Bacteroides sp. D20]
gi|316905509|gb|EFV27299.1| bacterial DNA-binding protein [Bacteroides sp. 4_1_36]
Length = 88
Score = 82.5 bits (203), Expect = 2e-14, Method: Composition-based stats.
Identities = 29/86 (33%), Positives = 49/86 (56%), Gaps = 1/86 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI +A ++ L+ D +K ++ + +T+A+ G +V + GFG+FSV +R AR+
Sbjct: 1 MNKAELISAMAAES-GLSKTDSKKALDAFIASVTKAMKAGDKVSLVGFGTFSVVERGARM 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNL 86
P +K I + K V F+ G L
Sbjct: 60 GINPSTKKPIEIAAKKVVKFKPGTEL 85
>gi|167645770|ref|YP_001683433.1| histone family protein DNA-binding protein [Caulobacter sp. K31]
gi|167348200|gb|ABZ70935.1| histone family protein DNA-binding protein [Caulobacter sp. K31]
Length = 92
Score = 82.5 bits (203), Expect = 2e-14, Method: Composition-based stats.
Identities = 25/91 (27%), Positives = 40/91 (43%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M S L+ + KL + +++ + + +T+A G V I GFG F V+ + AR
Sbjct: 1 MNVSDLVDAAVAADDKLTKTQAKALIDGVFKSLTEAAVKGEEVSIPGFGKFKVQAKPART 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P I + F K LK+ +N
Sbjct: 61 GRNPSTGAAIEIAASKKVAFTPAKQLKDAVN 91
>gi|254294205|ref|YP_003060228.1| histone family protein DNA-binding protein [Hirschia baltica ATCC
49814]
gi|254042736|gb|ACT59531.1| histone family protein DNA-binding protein [Hirschia baltica ATCC
49814]
Length = 88
Score = 82.5 bits (203), Expect = 2e-14, Method: Composition-based stats.
Identities = 23/88 (26%), Positives = 43/88 (48%), Gaps = 1/88 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS L +A+ + + + V+ +L+ ++ L G +V + GFG+F + R R
Sbjct: 1 MNKSELTKQVAEA-ASMTQSEAGRAVDAVLDTISSELKKGEQVALAGFGTFLAKTREERQ 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKE 88
R P K +++ +K F+ LK+
Sbjct: 60 GRNPATGKPMTIPKKTSASFKPASVLKD 87
>gi|84687534|ref|ZP_01015410.1| Histone-like DNA-binding protein (IHF) [Maritimibacter alkaliphilus
HTCC2654]
gi|84664443|gb|EAQ10931.1| Histone-like DNA-binding protein (IHF) [Rhodobacterales bacterium
HTCC2654]
Length = 110
Score = 82.5 bits (203), Expect = 2e-14, Method: Composition-based stats.
Identities = 26/89 (29%), Positives = 48/89 (53%), Gaps = 1/89 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
+ L + ++ L+ + ++V +L ++ AL G V+I FG+FSVR +AAR+
Sbjct: 17 TRMDLSEAVFRE-VGLSRNESAQLVESVLGHVSDALVKGETVKISSFGTFSVRDKAARVG 75
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P + + + + V FR + +KER+
Sbjct: 76 RNPKTGQEVPISPRRVLTFRPSQIMKERV 104
>gi|37522993|ref|NP_926370.1| DNA binding protein HU [Gloeobacter violaceus PCC 7421]
gi|35213996|dbj|BAC91365.1| DNA binding protein HU [Gloeobacter violaceus PCC 7421]
Length = 96
Score = 82.5 bits (203), Expect = 2e-14, Method: Composition-based stats.
Identities = 33/90 (36%), Positives = 50/90 (55%), Gaps = 1/90 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K L+ K KL +DV+ IV + + +A++ G +V + GFGSF RKRAAR
Sbjct: 1 MNKGELVDA-VAKKAKLAKKDVDAIVGAAFDVIVEAVSRGDKVTLVGFGSFEPRKRAARE 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P ++ +++ VP F AGK +E +
Sbjct: 60 GRNPKTREKMTIAATTVPAFSAGKQFREAV 89
>gi|118580329|ref|YP_901579.1| histone family protein DNA-binding protein [Pelobacter
propionicus DSM 2379]
gi|118503039|gb|ABK99521.1| histone family protein DNA-binding protein [Pelobacter
propionicus DSM 2379]
Length = 88
Score = 82.5 bits (203), Expect = 2e-14, Method: Composition-based stats.
Identities = 28/88 (31%), Positives = 39/88 (44%), Gaps = 1/88 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ + IA + + + V L+ T L G ++ GFG+F V +RAAR
Sbjct: 1 MTKAEFVAAIAAEL-DVPKNVAAETVEAFLKVTTDLLKAGDKITFPGFGTFGVSERAART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKE 88
R P I + F AGKNLK
Sbjct: 60 GRNPQTGAEIQIAASKSGKFTAGKNLKN 87
>gi|238899357|ref|YP_002925039.1| DNA-binding protein [Candidatus Hamiltonella defensa 5AT
(Acyrthosiphon pisum)]
gi|229467118|gb|ACQ68891.1| DNA-binding protein [Candidatus Hamiltonella defensa 5AT
(Acyrthosiphon pisum)]
Length = 113
Score = 82.5 bits (203), Expect = 2e-14, Method: Composition-based stats.
Identities = 26/90 (28%), Positives = 41/90 (45%), Gaps = 1/90 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI + K+ L + V + + +L V+I F +F V R+ R+
Sbjct: 1 MNKTELIEQVRDKS-GLTKAQSTEAVTAVFSSIIDSLGKKEPVQIIRFATFKVSHRSERM 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
+R P + I + VP F AGK LK +
Sbjct: 60 SRHPKTGEKIKTPAREVPVFSAGKRLKASV 89
>gi|167754539|ref|ZP_02426666.1| hypothetical protein CLORAM_00041 [Clostridium ramosum DSM 1402]
gi|167705371|gb|EDS19950.1| hypothetical protein CLORAM_00041 [Clostridium ramosum DSM 1402]
Length = 94
Score = 82.5 bits (203), Expect = 2e-14, Method: Composition-based stats.
Identities = 27/91 (29%), Positives = 48/91 (52%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K L+ T++K+ L +D E +V+ + +T+++ G +V I GFG+F V R AR
Sbjct: 5 MNKKELVETVSKER-NLTKKDAEILVDTVFNTITRSVVEGDKVLISGFGTFKVNDRKARK 63
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
+P Q+ + + F+ LK+ +N
Sbjct: 64 GISPKTQEEMVIPASKTVTFKPSNRLKDAMN 94
>gi|162148585|ref|YP_001603046.1| DNA binding protein [Gluconacetobacter diazotrophicus PAl 5]
gi|161787162|emb|CAP56754.1| putative DNA binding protein [Gluconacetobacter diazotrophicus
PAl 5]
Length = 97
Score = 82.5 bits (203), Expect = 2e-14, Method: Composition-based stats.
Identities = 29/91 (31%), Positives = 42/91 (46%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M + L+ IA ++ D K+++ L+E MT A G + + FG F VR+ AAR
Sbjct: 7 MKIADLVDHIAT-TTDISKTDTRKVLDALVEAMTAAAKAGDEITLPNFGKFKVREVAARE 65
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P I + F K LK+ LN
Sbjct: 66 GRNPATGATIQIAASRKLAFTPAKALKDSLN 96
>gi|21223911|ref|NP_629690.1| histone-like DNA binding protein [Streptomyces coelicolor A3(2)]
gi|256784990|ref|ZP_05523421.1| histone-like DNA binding protein [Streptomyces lividans TK24]
gi|289768882|ref|ZP_06528260.1| DNA-binding protein HU 2 [Streptomyces lividans TK24]
gi|61222645|sp|P0A3H7|DBH2_STRCO RecName: Full=DNA-binding protein HU 2
gi|61222646|sp|P0A3H8|DBH2_STRLI RecName: Full=DNA-binding protein HU 2
gi|3355704|emb|CAA20004.1| histone-like DNA binding protein [Streptomyces coelicolor A3(2)]
gi|5926707|dbj|BAA84639.1| histone-like protein [Streptomyces lividans]
gi|289699081|gb|EFD66510.1| DNA-binding protein HU 2 [Streptomyces lividans TK24]
Length = 218
Score = 82.5 bits (203), Expect = 2e-14, Method: Composition-based stats.
Identities = 32/95 (33%), Positives = 49/95 (51%), Gaps = 2/95 (2%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ L+ IA K Q V+ +L+ + +A+ G RV + GFGSF R AR
Sbjct: 1 MNKAQLVEAIADKLGG--RQQAADAVDAVLDALVRAVVAGDRVSVTGFGSFEKVDRPARY 58
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDS 95
AR P + + V++ VP FRAG+ K+ ++
Sbjct: 59 ARNPQTGERVRVKKTSVPRFRAGQGFKDLVSGSKK 93
>gi|110004904|emb|CAK99236.1| probable dna-binding protein hu2 [Spiroplasma citri]
Length = 94
Score = 82.5 bits (203), Expect = 2e-14, Method: Composition-based stats.
Identities = 35/94 (37%), Positives = 48/94 (51%), Gaps = 1/94 (1%)
Query: 1 MIKSSLIGTIAKKNPK-LNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAAR 59
M K L IA+K L+ E+I N + + + +AL G V I GFG F+V +RAAR
Sbjct: 1 MSKKELAAQIAEKFTDVLSKTHAEEITNFVFDHIKKALVAGKEVSIAGFGKFAVTERAAR 60
Query: 60 LARAPLAQKVISVEEKMVPFFRAGKNLKERLNSP 93
R P + I + F+AGK LK LN+
Sbjct: 61 DGRNPSTGETIKIPASKSAKFKAGKQLKTDLNNN 94
>gi|159044270|ref|YP_001533064.1| integration host factor subunit alpha [Dinoroseobacter shibae DFL
12]
gi|189044700|sp|A8LLT5|IHFA_DINSH RecName: Full=Integration host factor subunit alpha;
Short=IHF-alpha
gi|157912030|gb|ABV93463.1| integration host factor subunit alpha [Dinoroseobacter shibae DFL
12]
Length = 101
Score = 82.5 bits (203), Expect = 2e-14, Method: Composition-based stats.
Identities = 26/95 (27%), Positives = 49/95 (51%), Gaps = 1/95 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
+ L + ++ L+ + ++V +L M+ AL G V+I FG+FSVR ++AR+
Sbjct: 7 TRMDLSDAVFRE-VGLSRNESAQLVESILTHMSDALVRGESVKISSFGTFSVRDKSARIG 65
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDST 96
R P + + + + V FR +KER+ + +
Sbjct: 66 RNPKTGEEVPIHPRRVLTFRPSHLMKERVANGNRN 100
>gi|333024856|ref|ZP_08452920.1| putative DNA-binding protein HU (hs1) [Streptomyces sp. Tu6071]
gi|332744708|gb|EGJ75149.1| putative DNA-binding protein HU (hs1) [Streptomyces sp. Tu6071]
Length = 112
Score = 82.5 bits (203), Expect = 2e-14, Method: Composition-based stats.
Identities = 26/94 (27%), Positives = 42/94 (44%), Gaps = 2/94 (2%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGG-RVEIRGFGSFSVRKRAAR 59
M +S L+ +A + ++ +D + ++ E + +A G +V I GF +F RAAR
Sbjct: 20 MNRSELVAALADR-AEVTRKDADAVLAAFAEVVGDVVAKGDEKVTIPGFLTFERTHRAAR 78
Query: 60 LARAPLAQKVISVEEKMVPFFRAGKNLKERLNSP 93
AR P + I + AG LKE
Sbjct: 79 TARNPQTGEPIQIAAGYSVKVSAGSKLKEAAKGK 112
>gi|254486218|ref|ZP_05099423.1| integration host factor, alpha subunit [Roseobacter sp. GAI101]
gi|214043087|gb|EEB83725.1| integration host factor, alpha subunit [Roseobacter sp. GAI101]
Length = 110
Score = 82.5 bits (203), Expect = 2e-14, Method: Composition-based stats.
Identities = 25/89 (28%), Positives = 50/89 (56%), Gaps = 1/89 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
+ L + ++ L+ + ++V +L+ M+ AL G +V+I FG+FSVR+++AR+
Sbjct: 17 TRMDLSEAVFRE-VGLSRNESAQLVESVLDHMSDALVQGEQVKISSFGTFSVREKSARVG 75
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P + + + + V FR +K+R+
Sbjct: 76 RNPKTGEEVPINPRRVLTFRPSHLMKDRV 104
>gi|114562616|ref|YP_750129.1| histone family protein DNA-binding protein [Shewanella
frigidimarina NCIMB 400]
gi|114333909|gb|ABI71291.1| histone family protein DNA-binding protein [Shewanella
frigidimarina NCIMB 400]
Length = 91
Score = 82.5 bits (203), Expect = 2e-14, Method: Composition-based stats.
Identities = 24/92 (26%), Positives = 43/92 (46%), Gaps = 1/92 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K L T+A K + ++ + +L + Q LA G ++ I FG+F +R ++
Sbjct: 1 MNKKQLAQTMASKM-DIPQVQAKQQLEQILAVIHQGLAEGEKIYIPQFGTFELRFYLPKV 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P + I ++ P F+ LK +N+
Sbjct: 60 GRNPQTGEAIEIDGFNQPSFKVSPALKALINA 91
>gi|124515197|gb|EAY56708.1| putative histone-like DNA-binding protein [Leptospirillum
rubarum]
gi|206603673|gb|EDZ40153.1| Putative histone-like DNA-binding protein [Leptospirillum sp.
Group II '5-way CG']
Length = 102
Score = 82.5 bits (203), Expect = 2e-14, Method: Composition-based stats.
Identities = 34/89 (38%), Positives = 45/89 (50%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
KS LI T+ KN L + V ++V+ + +T +A G V I GFG F KRAAR
Sbjct: 10 TKSELIDTLHAKNGTLTKKAVSEVVDQVFSTITDHVAKGTAVNIVGFGKFHAVKRAARTG 69
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P VI + P F AGK K+ +
Sbjct: 70 RNPATGAVIKIAATTTPRFAAGKAFKDSV 98
>gi|58176578|pdb|1RIY|A Chain A, Hu Mutant V42i From Thermotoga Maritima
Length = 90
Score = 82.5 bits (203), Expect = 2e-14, Method: Composition-based stats.
Identities = 41/91 (45%), Positives = 59/91 (64%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K LI +AKK +DV+ I++ +LE +T+ALA G +++I GFGSF VRK AAR
Sbjct: 1 MNKKELIDRVAKKAGA-KKKDVKLILDTILETITEALAKGEKIQIVGFGSFEVRKAAARK 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
P +K I++ E+ VP F+ GK LKE++
Sbjct: 60 GVNPQTRKPITIPERKVPKFKPGKALKEKVK 90
>gi|302383009|ref|YP_003818832.1| integration host factor, subunit alpha [Brevundimonas
subvibrioides ATCC 15264]
gi|302193637|gb|ADL01209.1| integration host factor, alpha subunit [Brevundimonas
subvibrioides ATCC 15264]
Length = 102
Score = 82.5 bits (203), Expect = 2e-14, Method: Composition-based stats.
Identities = 25/89 (28%), Positives = 49/89 (55%), Gaps = 1/89 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
++ L + ++ L+ Q+ +V LE + ++L G V++ GFG F VR+++AR+
Sbjct: 8 TRADLCEAVLEE-VGLSRQECSSLVERTLELIVESLEQGQTVKLSGFGVFQVREKSARMG 66
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P + ++ + V FRA + +K R+
Sbjct: 67 RNPKTGEPAAINPRRVISFRASQIMKSRV 95
>gi|262276977|ref|ZP_06054770.1| DNA-binding protein HU 1 (DNA-binding protein II) (HB) [alpha
proteobacterium HIMB114]
gi|262224080|gb|EEY74539.1| DNA-binding protein HU 1 (DNA-binding protein II) (HB) [alpha
proteobacterium HIMB114]
Length = 91
Score = 82.5 bits (203), Expect = 2e-14, Method: Composition-based stats.
Identities = 27/92 (29%), Positives = 41/92 (44%), Gaps = 1/92 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K L+ I+ L+ D E+ + + + AL + V+I GFG++ V KR AR
Sbjct: 1 MNKKQLVAKIS-STLNLSKADAERTFDSITNIILDALKDDDAVKIAGFGTYKVAKRKARQ 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P + I + F K LK+ N
Sbjct: 60 GRNPRTGETIQISASQKVKFLPAKALKDMFNK 91
>gi|167469217|ref|ZP_02333921.1| integration host factor, alpha subunit [Yersinia pestis FV-1]
Length = 98
Score = 82.5 bits (203), Expect = 2e-14, Method: Composition-based stats.
Identities = 27/81 (33%), Positives = 45/81 (55%)
Query: 16 KLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLARAPLAQKVISVEEK 75
L+ +D + +V + EE+ +AL NG +V++ GFG+F +R + R R P + I + +
Sbjct: 17 GLSKRDAKDLVELFFEEVRRALENGEQVKLSGFGNFDLRDKNQRPGRNPKTGEDIPITAR 76
Query: 76 MVPFFRAGKNLKERLNSPDST 96
V FR G+ LK R+ S
Sbjct: 77 RVVTFRPGQKLKSRVESATPK 97
>gi|296533342|ref|ZP_06895945.1| DNA-binding protein HU [Roseomonas cervicalis ATCC 49957]
gi|296266332|gb|EFH12354.1| DNA-binding protein HU [Roseomonas cervicalis ATCC 49957]
Length = 98
Score = 82.5 bits (203), Expect = 2e-14, Method: Composition-based stats.
Identities = 27/88 (30%), Positives = 42/88 (47%), Gaps = 1/88 (1%)
Query: 3 KSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLAR 62
+ L+ A L + ++ +L + AL G V + GFGSF+V +RAAR R
Sbjct: 10 RQDLVDAAAAATS-LPKTQADAVLKAVLAAVGDALGAGREVRLAGFGSFAVSERAARQGR 68
Query: 63 APLAQKVISVEEKMVPFFRAGKNLKERL 90
P +V+ + F+ K+LK RL
Sbjct: 69 NPATGEVVQIAASKSVKFKPAKDLKTRL 96
>gi|56697343|ref|YP_167711.1| integration host factor subunit alpha [Ruegeria pomeroyi DSS-3]
gi|81676195|sp|Q5LQJ4|IHFA_SILPO RecName: Full=Integration host factor subunit alpha;
Short=IHF-alpha
gi|56679080|gb|AAV95746.1| integration host factor, alpha subunit [Ruegeria pomeroyi DSS-3]
Length = 100
Score = 82.5 bits (203), Expect = 2e-14, Method: Composition-based stats.
Identities = 26/89 (29%), Positives = 49/89 (55%), Gaps = 1/89 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
+ L + ++ L+ + ++V +L M+ AL G +V+I FG+FSVR ++AR+
Sbjct: 7 TRMDLSEAVFRE-VGLSRNESAQLVESMLNHMSDALVRGEQVKISSFGTFSVRDKSARVG 65
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P + + ++ + V FR +KER+
Sbjct: 66 RNPKTGEEVPIQPRRVLTFRPSHLMKERV 94
>gi|291515643|emb|CBK64853.1| Bacterial nucleoid DNA-binding protein [Alistipes shahii WAL
8301]
Length = 86
Score = 82.5 bits (203), Expect = 2e-14, Method: Composition-based stats.
Identities = 22/82 (26%), Positives = 42/82 (51%), Gaps = 1/82 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ + IA + ++ D K V+ ++ Q+L G R+ + G G+FSV++++ R+
Sbjct: 1 MNKAQFVEAIAL-DANISKIDARKAVDAMIRVTVQSLREGERLTLTGLGTFSVQQKSERV 59
Query: 61 ARAPLAQKVISVEEKMVPFFRA 82
R P + + + V FR
Sbjct: 60 GRNPRTGAAVKIPPRKVIKFRP 81
>gi|17987462|ref|NP_540096.1| integration host factor subunit alpha [Brucella melitensis bv. 1
str. 16M]
gi|17983157|gb|AAL52360.1| integration host factor alpha-subunit [Brucella melitensis bv. 1
str. 16M]
Length = 128
Score = 82.5 bits (203), Expect = 2e-14, Method: Composition-based stats.
Identities = 24/89 (26%), Positives = 47/89 (52%), Gaps = 1/89 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
++ L + +K L+ + +V M+L+E+ A+ NG V++ F +F VR + R+
Sbjct: 28 TRADLAEAVYRK-VGLSRTESAALVEMILDEVCDAIVNGETVKLSSFATFQVRDKNERIG 86
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P + + + + V F+A LK+R+
Sbjct: 87 RNPKTGEEVPILPRRVMTFKASNVLKQRI 115
>gi|295112033|emb|CBL28783.1| bacterial nucleoid protein Hbs [Synergistetes bacterium SGP1]
Length = 100
Score = 82.5 bits (203), Expect = 2e-14, Method: Composition-based stats.
Identities = 37/91 (40%), Positives = 52/91 (57%), Gaps = 2/91 (2%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI IA+K L +DV +V + + AL+ G + GFG F V++RAAR
Sbjct: 1 MTKAELIDAIAEKLL-LKKKDVVPVVEEVFASIEGALSRGEKCTFVGFGVFEVKERAARE 59
Query: 61 ARAPLAQ-KVISVEEKMVPFFRAGKNLKERL 90
R P KV+ + K VP FR GK+LKE++
Sbjct: 60 GRNPQDPTKVVKIPAKKVPVFRPGKDLKEKV 90
>gi|315606150|ref|ZP_07881178.1| DNA-binding protein HU [Actinomyces sp. oral taxon 180 str.
F0310]
gi|315312108|gb|EFU60197.1| DNA-binding protein HU [Actinomyces sp. oral taxon 180 str.
F0310]
Length = 93
Score = 82.5 bits (203), Expect = 2e-14, Method: Composition-based stats.
Identities = 21/89 (23%), Positives = 39/89 (43%), Gaps = 1/89 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
++ L+ IA++ L ++ + + ++LA G V++ G S +RAAR
Sbjct: 4 NRTELVAQIAER-ADLTKAKADEALAAFQAVLVESLAKGEAVKVTGLLSVERVERAARTG 62
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P + I + AG LK+ +
Sbjct: 63 RNPRTGEEIKIPAGYGVKLSAGSTLKKAV 91
>gi|227821546|ref|YP_002825516.1| integration host factor subunit alpha [Sinorhizobium fredii
NGR234]
gi|254803519|sp|C3M9J7|IHFA_RHISN RecName: Full=Integration host factor subunit alpha;
Short=IHF-alpha
gi|227340545|gb|ACP24763.1| integration host factor, alpha subunit [Sinorhizobium fredii
NGR234]
Length = 112
Score = 82.5 bits (203), Expect = 2e-14, Method: Composition-based stats.
Identities = 21/89 (23%), Positives = 47/89 (52%), Gaps = 1/89 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
++ L ++ +K L+ + ++V +++E+ A+ G V++ F +F VR + R+
Sbjct: 7 TRADLAESVFRK-VGLSRTESAELVETVIDEICNAIVRGESVKLSSFATFQVRDKNERIG 65
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P + + + + V F+A LK+R+
Sbjct: 66 RNPKTGEEVPISPRRVMTFKASNVLKQRV 94
>gi|254456178|ref|ZP_05069607.1| non-specific DNA-binding protein HBsu [Candidatus Pelagibacter
sp. HTCC7211]
gi|207083180|gb|EDZ60606.1| non-specific DNA-binding protein HBsu [Candidatus Pelagibacter
sp. HTCC7211]
Length = 91
Score = 82.5 bits (203), Expect = 2e-14, Method: Composition-based stats.
Identities = 27/92 (29%), Positives = 41/92 (44%), Gaps = 1/92 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K LI ++ ++ D E+ + + + AL V+I GFG++ V KR AR+
Sbjct: 1 MNKKQLIAQLSGSL-NMSKADAERTFDTITNTILDALKGDDSVKIAGFGTYKVAKRKARV 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P + I + F K LKE N
Sbjct: 60 GRNPRTGEQIQIAASQKVKFLPAKALKEVFNK 91
>gi|51244752|ref|YP_064636.1| DNA-binding protein HU [Desulfotalea psychrophila LSv54]
gi|50875789|emb|CAG35629.1| probable DNA-binding protein HU [Desulfotalea psychrophila LSv54]
Length = 97
Score = 82.5 bits (203), Expect = 2e-14, Method: Composition-based stats.
Identities = 34/90 (37%), Positives = 54/90 (60%), Gaps = 1/90 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M+K +I +++++ + QDV +++LE ++ ALA RVE+RGFGSFSVR R R
Sbjct: 4 MLKKDIIDSVSEELS-MQKQDVSVAADVILETISNALARDRRVELRGFGSFSVRSRKPRT 62
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
+ P +V+ + E+ F K+LKE L
Sbjct: 63 TKNPRTGQVMDIPERRTLHFTMSKSLKESL 92
>gi|309813025|ref|ZP_07706753.1| DNA-binding protein HB1 [Dermacoccus sp. Ellin185]
gi|308433097|gb|EFP57001.1| DNA-binding protein HB1 [Dermacoccus sp. Ellin185]
Length = 91
Score = 82.5 bits (203), Expect = 2e-14, Method: Composition-based stats.
Identities = 22/89 (24%), Positives = 41/89 (46%), Gaps = 1/89 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M +S L TIA++ ++ +D ++ L + + +A+ G ++++ G + +RAAR
Sbjct: 1 MNRSDLASTIAQRT-GVSVKDATAVLAGLNDVIIEAVGRGDKIQLPGLLTIERVERAART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKER 89
R P I + AG LK
Sbjct: 60 GRNPQTGAEIEIPAGYAAKVTAGSKLKAA 88
>gi|284108794|ref|ZP_06386459.1| Histone-like bacterial DNA-binding protein [Candidatus
Poribacteria sp. WGA-A3]
gi|283829868|gb|EFC34159.1| Histone-like bacterial DNA-binding protein [Candidatus
Poribacteria sp. WGA-A3]
Length = 91
Score = 82.5 bits (203), Expect = 2e-14, Method: Composition-based stats.
Identities = 27/92 (29%), Positives = 46/92 (50%), Gaps = 1/92 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ + I ++ ++ + +V +L+ M L G V+I GFG+F VR + R
Sbjct: 1 MRKADIANYICEQ-VGVSKTEAMGLVEYVLQCMKDVLRKGEAVKIAGFGNFMVRNKGERK 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P + I++ + V FRA + K +NS
Sbjct: 60 GRNPRTGEEIAITPRRVVTFRASQIFKRDVNS 91
>gi|269469081|gb|EEZ80634.1| histone family protein DNA-binding [uncultured SUP05 cluster
bacterium]
Length = 92
Score = 82.5 bits (203), Expect = 2e-14, Method: Composition-based stats.
Identities = 35/91 (38%), Positives = 54/91 (59%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI +++ L+ D + V +++E +T+ +A+G EIRGFG F + R ARL
Sbjct: 1 MKKTDLILSLSNNT-DLSKTDAKVSVEVIIEALTKGIASGEGAEIRGFGGFYKKHRKARL 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
P + V EK VPFF+ GK+L+E +N
Sbjct: 60 GINPKTSERTQVSEKFVPFFKPGKSLREVVN 90
>gi|302339671|ref|YP_003804877.1| histone family protein DNA-binding protein [Spirochaeta smaragdinae
DSM 11293]
gi|301636856|gb|ADK82283.1| histone family protein DNA-binding protein [Spirochaeta smaragdinae
DSM 11293]
Length = 117
Score = 82.1 bits (202), Expect = 2e-14, Method: Composition-based stats.
Identities = 32/88 (36%), Positives = 50/88 (56%), Gaps = 2/88 (2%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAAR-L 60
K+ +I I +K+ ++N D+ +++ L EE+ AL VE+RGFG+F +R R R
Sbjct: 16 TKAEIIERIYEKH-EVNRSDIHDVIDALFEELKDALQQDRVVELRGFGTFEIRTRKGRDR 74
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKE 88
AR P +++ V V FR GK LK+
Sbjct: 75 ARNPKTGEIVPVNTHGVAVFRPGKELKQ 102
>gi|154507606|ref|ZP_02043248.1| hypothetical protein ACTODO_00086 [Actinomyces odontolyticus ATCC
17982]
gi|293189276|ref|ZP_06607999.1| DNA-binding protein HU [Actinomyces odontolyticus F0309]
gi|153797240|gb|EDN79660.1| hypothetical protein ACTODO_00086 [Actinomyces odontolyticus ATCC
17982]
gi|292821739|gb|EFF80675.1| DNA-binding protein HU [Actinomyces odontolyticus F0309]
Length = 93
Score = 82.1 bits (202), Expect = 2e-14, Method: Composition-based stats.
Identities = 21/89 (23%), Positives = 39/89 (43%), Gaps = 1/89 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
++ L+ IA++ L ++ + + ++LA G V++ G S +RAAR
Sbjct: 4 NRTELVAQIAER-ADLTKAKADEALAAFQAVLVESLAKGEAVKVTGLLSVERVERAARTG 62
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P + I + AG LK+ +
Sbjct: 63 RNPRTGEEIKIPAGYGVKLSAGSTLKKAV 91
>gi|114762844|ref|ZP_01442276.1| integration host factor, alpha subunit [Pelagibaca bermudensis
HTCC2601]
gi|114544454|gb|EAU47461.1| integration host factor, alpha subunit [Roseovarius sp. HTCC2601]
Length = 92
Score = 82.1 bits (202), Expect = 2e-14, Method: Composition-based stats.
Identities = 26/86 (30%), Positives = 49/86 (56%), Gaps = 1/86 (1%)
Query: 5 SLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLARAP 64
L + ++ L+ + ++V +L+ M+ AL G +V+I FG+FSVR +AAR+ R P
Sbjct: 2 DLSEAVFRE-VGLSRNESAELVESVLQHMSDALVRGEQVKISSFGTFSVRDKAARVGRNP 60
Query: 65 LAQKVISVEEKMVPFFRAGKNLKERL 90
+ + ++ + V FR +KE++
Sbjct: 61 KTGEEVPIQPRRVLTFRPSHLMKEQV 86
>gi|29654618|ref|NP_820310.1| integration host factor subunit alpha [Coxiella burnetii RSA 493]
gi|153207449|ref|ZP_01946149.1| integration host factor, alpha subunit [Coxiella burnetii 'MSU
Goat Q177']
gi|154706871|ref|YP_001424757.1| integration host factor subunit alpha [Coxiella burnetii Dugway
5J108-111]
gi|161831262|ref|YP_001597169.1| integration host factor subunit alpha [Coxiella burnetii RSA 331]
gi|165924056|ref|ZP_02219888.1| integration host factor, alpha subunit [Coxiella burnetii RSA
334]
gi|212212299|ref|YP_002303235.1| integration host factor subunit alpha [Coxiella burnetii
CbuG_Q212]
gi|212218732|ref|YP_002305519.1| integration host factor subunit alpha [Coxiella burnetii
CbuK_Q154]
gi|81722530|sp|Q83C16|IHFA_COXBU RecName: Full=Integration host factor subunit alpha;
Short=IHF-alpha
gi|189044697|sp|A9KGB5|IHFA_COXBN RecName: Full=Integration host factor subunit alpha;
Short=IHF-alpha
gi|189044698|sp|A9N8J9|IHFA_COXBR RecName: Full=Integration host factor subunit alpha;
Short=IHF-alpha
gi|226707371|sp|B6J7X5|IHFA_COXB1 RecName: Full=Integration host factor subunit alpha;
Short=IHF-alpha
gi|226707372|sp|B6IZG2|IHFA_COXB2 RecName: Full=Integration host factor subunit alpha;
Short=IHF-alpha
gi|29541886|gb|AAO90824.1| integration host factor alpha-subunit [Coxiella burnetii RSA 493]
gi|120576580|gb|EAX33204.1| integration host factor, alpha subunit [Coxiella burnetii 'MSU
Goat Q177']
gi|154356157|gb|ABS77619.1| integration host factor alpha-subunit [Coxiella burnetii Dugway
5J108-111]
gi|161763129|gb|ABX78771.1| integration host factor, alpha subunit [Coxiella burnetii RSA
331]
gi|165916488|gb|EDR35092.1| integration host factor, alpha subunit [Coxiella burnetii RSA
334]
gi|212010709|gb|ACJ18090.1| integration host factor alpha-subunit [Coxiella burnetii
CbuG_Q212]
gi|212012994|gb|ACJ20374.1| integration host factor alpha-subunit [Coxiella burnetii
CbuK_Q154]
Length = 103
Score = 82.1 bits (202), Expect = 2e-14, Method: Composition-based stats.
Identities = 26/92 (28%), Positives = 47/92 (51%), Gaps = 1/92 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ L + LN ++ + +V + +E++ +L G V++ GFG+F++R + R
Sbjct: 4 TKADLSEHLFN-VVGLNKREAKDLVELFFKEISLSLERGEPVKLSGFGNFNLRDKGERPG 62
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLNSP 93
R P + I + + V FRAG LK R+
Sbjct: 63 RNPKTGEEIPITARRVVTFRAGHKLKSRVEKN 94
>gi|218667321|ref|YP_002425542.1| DNA-binding protein, HU family [Acidithiobacillus ferrooxidans
ATCC 23270]
gi|218519534|gb|ACK80120.1| DNA-binding protein, HU family [Acidithiobacillus ferrooxidans
ATCC 23270]
Length = 91
Score = 82.1 bits (202), Expect = 2e-14, Method: Composition-based stats.
Identities = 23/89 (25%), Positives = 46/89 (51%), Gaps = 1/89 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
+ K L ++ L ++ +VN + + + LA+G V++ GFG+F + ++ AR
Sbjct: 3 ITKLDLTRHLSD-TMGLTAKECAALVNAMFDTIRATLASGEDVKLSGFGNFILHEKRARP 61
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKER 89
R P + ++ + V FRA + ++ER
Sbjct: 62 GRNPKNGEPFEIKARRVVTFRASQLVRER 90
>gi|220923150|ref|YP_002498452.1| histone family protein DNA-binding protein [Methylobacterium
nodulans ORS 2060]
gi|219947757|gb|ACL58149.1| histone family protein DNA-binding protein [Methylobacterium
nodulans ORS 2060]
Length = 90
Score = 82.1 bits (202), Expect = 2e-14, Method: Composition-based stats.
Identities = 24/91 (26%), Positives = 41/91 (45%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K L+ IA K ++ K++ + TQ+L +G V + G G ++ AR
Sbjct: 1 MNKPDLLKAIAAK-AGVSEAIGSKVLAAFGDIATQSLKSGDDVPLPGLGKLVTVRQEARK 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
P + + + ++VP RA L + LN
Sbjct: 60 GHNPRTGQPLQIPARLVPKLRASTTLHDALN 90
>gi|167646182|ref|YP_001683845.1| histone family protein DNA-binding protein [Caulobacter sp. K31]
gi|167348612|gb|ABZ71347.1| histone family protein DNA-binding protein [Caulobacter sp. K31]
Length = 92
Score = 82.1 bits (202), Expect = 2e-14, Method: Composition-based stats.
Identities = 26/91 (28%), Positives = 40/91 (43%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M S L+ PKL + +++ + + ++ A G V I GFG F V+ + AR
Sbjct: 1 MNVSDLVDAAVAAEPKLTKTQAKALIDGVFKALSDAAVKGEEVSIPGFGKFKVQAKPART 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P I + F A K LK+ +N
Sbjct: 61 GRNPATGGTIEIAASKKVAFTAAKQLKDAVN 91
>gi|318056820|ref|ZP_07975543.1| DNA-binding protein HU 1 [Streptomyces sp. SA3_actG]
gi|318080704|ref|ZP_07988036.1| DNA-binding protein HU 1 [Streptomyces sp. SA3_actF]
Length = 107
Score = 82.1 bits (202), Expect = 2e-14, Method: Composition-based stats.
Identities = 26/94 (27%), Positives = 42/94 (44%), Gaps = 2/94 (2%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGG-RVEIRGFGSFSVRKRAAR 59
M +S L+ +A + ++ +D + ++ E + +A G +V I GF +F RAAR
Sbjct: 15 MNRSELVAALADR-AEVTRKDADAVLAAFAEVVGDVVAKGDEKVTIPGFLTFERTHRAAR 73
Query: 60 LARAPLAQKVISVEEKMVPFFRAGKNLKERLNSP 93
AR P + I + AG LKE
Sbjct: 74 TARNPQTGEPIQIAAGYSVKVSAGSKLKEAAKGK 107
>gi|121602866|ref|YP_988943.1| integration host factor subunit alpha [Bartonella bacilliformis
KC583]
gi|166918498|sp|A1USJ0|IHFA_BARBK RecName: Full=Integration host factor subunit alpha;
Short=IHF-alpha
gi|120615043|gb|ABM45644.1| integration host factor, alpha subunit [Bartonella bacilliformis
KC583]
Length = 103
Score = 82.1 bits (202), Expect = 2e-14, Method: Composition-based stats.
Identities = 23/89 (25%), Positives = 46/89 (51%), Gaps = 1/89 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
++ L + +K L+Y + +V ++L E++ +L G V++ F +F VR ++ R+
Sbjct: 7 TRADLASAVCRK-VGLSYTESAALVELILSEISDSLVKGEMVKLSCFATFQVRSKSRRIG 65
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P + + V F+A LK+R+
Sbjct: 66 RNPKTGIEAPIPPRRVVTFKAANILKQRI 94
>gi|254501752|ref|ZP_05113903.1| DNA-binding protein HU [Labrenzia alexandrii DFL-11]
gi|222437823|gb|EEE44502.1| DNA-binding protein HU [Labrenzia alexandrii DFL-11]
Length = 83
Score = 82.1 bits (202), Expect = 2e-14, Method: Composition-based stats.
Identities = 22/76 (28%), Positives = 40/76 (52%)
Query: 16 KLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLARAPLAQKVISVEEK 75
L+ + ++V +L E++ L G V++ FGSF VR + R+ R P + + + +
Sbjct: 2 GLSRTESSELVERVLSEISDCLVTGESVKLSSFGSFVVRSKGERIGRNPKTGEEVPISPR 61
Query: 76 MVPFFRAGKNLKERLN 91
V F+ LK+R+N
Sbjct: 62 RVMVFKPSNVLKQRIN 77
>gi|148559603|ref|YP_001258756.1| integration host factor subunit alpha [Brucella ovis ATCC 25840]
gi|148370860|gb|ABQ60839.1| integration host factor, alpha subunit [Brucella ovis ATCC 25840]
Length = 128
Score = 82.1 bits (202), Expect = 2e-14, Method: Composition-based stats.
Identities = 24/89 (26%), Positives = 47/89 (52%), Gaps = 1/89 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
++ L + +K L+ + +V M+L+E+ A+ NG V++ F +F VR + R+
Sbjct: 28 TRADLAEAVYRK-VGLSRTESAALVEMILDEVCDAIVNGETVKLSSFATFQVRDKNERIG 86
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P + + + + V F+A LK+R+
Sbjct: 87 RNPKTGEEVPILPRRVMTFKASNVLKQRI 115
>gi|90419421|ref|ZP_01227331.1| integration host factor [Aurantimonas manganoxydans SI85-9A1]
gi|90336358|gb|EAS50099.1| integration host factor [Aurantimonas manganoxydans SI85-9A1]
Length = 123
Score = 82.1 bits (202), Expect = 2e-14, Method: Composition-based stats.
Identities = 26/89 (29%), Positives = 49/89 (55%), Gaps = 1/89 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
++ L + +K L+ + ++V M+L+EM +A+G V+I FGSF VR++ R+
Sbjct: 8 TRADLSEAVFRKI-GLSRTESAQLVEMVLDEMCSTIASGESVKISSFGSFLVREKNERIG 66
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P + + + + V F+ LK+R+
Sbjct: 67 RNPKTGEEVPILPRRVAVFKPSNVLKDRI 95
>gi|145298939|ref|YP_001141780.1| integration host factor alpha-subunit [Aeromonas salmonicida
subsp. salmonicida A449]
gi|142851711|gb|ABO90032.1| integration host factor alpha-subunit [Aeromonas salmonicida
subsp. salmonicida A449]
Length = 81
Score = 82.1 bits (202), Expect = 2e-14, Method: Composition-based stats.
Identities = 25/80 (31%), Positives = 45/80 (56%)
Query: 17 LNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLARAPLAQKVISVEEKM 76
++ ++ + +V EE+ QAL G +V+I GFG+F +R++ R R P + I + +
Sbjct: 1 MSKREAKDMVEAFFEEIRQALERGEQVKISGFGNFDLREKNQRPGRNPKTGEDIPISARR 60
Query: 77 VPFFRAGKNLKERLNSPDST 96
V FR G+ LK R+ + +
Sbjct: 61 VVTFRPGQKLKARVENVEPN 80
>gi|71066548|ref|YP_265275.1| integration host factor subunit alpha [Psychrobacter arcticus
273-4]
gi|123775561|sp|Q4FQ67|IHFA_PSYA2 RecName: Full=Integration host factor subunit alpha;
Short=IHF-alpha
gi|71039533|gb|AAZ19841.1| histone-like bacterial DNA-binding protein [Psychrobacter
arcticus 273-4]
Length = 99
Score = 82.1 bits (202), Expect = 2e-14, Method: Composition-based stats.
Identities = 21/91 (23%), Positives = 50/91 (54%), Gaps = 1/91 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
KS +I + + L Q+ +V +E++++L +G V++ GFG+F ++ + +R
Sbjct: 5 TKSDMIEHL-MSHLNLTRQEGRCLVENFFDELSESLIDGKEVKLSGFGNFELKDKNSRPG 63
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P + ++V + V F+ G+ +++++
Sbjct: 64 RNPKTGEPVAVSARRVVTFKTGQKFRQQVDE 94
>gi|329964256|ref|ZP_08301357.1| DNA-binding protein HU-beta [Bacteroides fluxus YIT 12057]
gi|328525561|gb|EGF52604.1| DNA-binding protein HU-beta [Bacteroides fluxus YIT 12057]
Length = 88
Score = 82.1 bits (202), Expect = 2e-14, Method: Composition-based stats.
Identities = 29/86 (33%), Positives = 49/86 (56%), Gaps = 1/86 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI +A + L+ D +K ++ + +T+A+ G +V + GFG+FSV +R+AR+
Sbjct: 1 MNKAELISAMAAE-AGLSKVDSKKALDAFIVSVTKAMKAGDKVSLVGFGTFSVAERSARM 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNL 86
P +K I + K V F+ G L
Sbjct: 60 GINPSTKKPIEIAAKKVVKFKPGAEL 85
>gi|308178354|ref|YP_003917760.1| DNA-binding protein HU [Arthrobacter arilaitensis Re117]
gi|308178355|ref|YP_003917761.1| DNA-binding protein HU [Arthrobacter arilaitensis Re117]
gi|307745817|emb|CBT76789.1| DNA-binding protein HU [Arthrobacter arilaitensis Re117]
gi|307745818|emb|CBT76790.1| DNA-binding protein HU [Arthrobacter arilaitensis Re117]
Length = 94
Score = 82.1 bits (202), Expect = 2e-14, Method: Composition-based stats.
Identities = 22/90 (24%), Positives = 38/90 (42%), Gaps = 1/90 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M +S L+ +A K + V +++ + E ++ G +V I G+ + RAAR
Sbjct: 3 MNRSELVAAVAAKTEN-SQVAVNGVLDAVFEVFVDQISKGEKVSIPGWLAVERTDRAART 61
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P + I + AG LK +
Sbjct: 62 GRNPQTGEAIQIPAGHSVKLTAGSKLKAAV 91
>gi|330813819|ref|YP_004358058.1| integration host factor alpha subunit [Candidatus Pelagibacter
sp. IMCC9063]
gi|327486914|gb|AEA81319.1| integration host factor alpha subunit [Candidatus Pelagibacter
sp. IMCC9063]
Length = 93
Score = 82.1 bits (202), Expect = 2e-14, Method: Composition-based stats.
Identities = 30/92 (32%), Positives = 42/92 (45%), Gaps = 1/92 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K LI I+ + L+ D E+ + + + AL N V+I GFG++ V KR AR
Sbjct: 1 MNKKQLIAKISA-SMNLSKADAERTFDGITNIILDALKNDDNVKIAGFGTYKVAKRKARQ 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P + I + F K LKE N
Sbjct: 60 GRNPRTGETIQISASQKVKFLPAKALKEMFNK 91
>gi|146277321|ref|YP_001167480.1| histone family protein DNA-binding protein [Rhodobacter
sphaeroides ATCC 17025]
gi|146278163|ref|YP_001168322.1| histone family protein DNA-binding protein [Rhodobacter
sphaeroides ATCC 17025]
gi|145555562|gb|ABP70175.1| histone family protein DNA-binding protein [Rhodobacter
sphaeroides ATCC 17025]
gi|145556404|gb|ABP71017.1| histone family protein DNA-binding protein [Rhodobacter
sphaeroides ATCC 17025]
Length = 90
Score = 82.1 bits (202), Expect = 2e-14, Method: Composition-based stats.
Identities = 21/82 (25%), Positives = 41/82 (50%), Gaps = 1/82 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
KS L+ T+A+K ++ V+ +++ ++++ A+ G + + GFGSF R R AR
Sbjct: 5 NKSDLVSTVAEK-VGVSRLAVQTVLDEAVDQIANAVRCGDSITLTGFGSFKPRHRPARTG 63
Query: 62 RAPLAQKVISVEEKMVPFFRAG 83
R P + +++ F
Sbjct: 64 RNPRTGEAVAIPASTSIGFTPS 85
>gi|239831603|ref|ZP_04679932.1| integration host factor, alpha subunit [Ochrobactrum intermedium
LMG 3301]
gi|239823870|gb|EEQ95438.1| integration host factor, alpha subunit [Ochrobactrum intermedium
LMG 3301]
Length = 132
Score = 82.1 bits (202), Expect = 2e-14, Method: Composition-based stats.
Identities = 24/89 (26%), Positives = 47/89 (52%), Gaps = 1/89 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
++ L + +K L+ + +V M+L+E+ A+ NG V++ F +F VR + R+
Sbjct: 32 TRADLAEAVYRK-VGLSRTESAALVEMILDEVCDAIVNGETVKLSSFATFQVRDKNERIG 90
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P + + + + V F+A LK+R+
Sbjct: 91 RNPKTGEEVPILPRRVMTFKASNVLKQRI 119
>gi|93007121|ref|YP_581558.1| histone-like DNA-binding protein [Psychrobacter cryohalolentis
K5]
gi|123264368|sp|Q1Q8C9|IHFA_PSYCK RecName: Full=Integration host factor subunit alpha;
Short=IHF-alpha
gi|92394799|gb|ABE76074.1| histone-like DNA-binding protein [Psychrobacter cryohalolentis
K5]
Length = 99
Score = 82.1 bits (202), Expect = 2e-14, Method: Composition-based stats.
Identities = 21/91 (23%), Positives = 50/91 (54%), Gaps = 1/91 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
KS +I + + L Q+ +V +E++++L +G V++ GFG+F ++ + +R
Sbjct: 5 TKSDMIEHL-MNHLNLTRQEGRCLVENFFDELSESLIDGKEVKLSGFGNFELKDKNSRPG 63
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P + ++V + V F+ G+ +++++
Sbjct: 64 RNPKTGEPVAVSARRVVTFKTGQKFRQQVDE 94
>gi|328953615|ref|YP_004370949.1| histone family protein DNA-binding protein [Desulfobacca
acetoxidans DSM 11109]
gi|328453939|gb|AEB09768.1| histone family protein DNA-binding protein [Desulfobacca
acetoxidans DSM 11109]
Length = 98
Score = 82.1 bits (202), Expect = 2e-14, Method: Composition-based stats.
Identities = 26/95 (27%), Positives = 48/95 (50%), Gaps = 1/95 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+SL+ + +K L+ + K+V+ + + Q LA V I GFG + V+ + R
Sbjct: 4 TKASLVQVLFEKEI-LSKAEAAKVVDAVFRIIKQTLAEKEDVLISGFGKWLVKTKKERRG 62
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDST 96
R P + ++++ + V FRA L+ +N S+
Sbjct: 63 RNPQTGQDLTIDARRVVTFRASGVLRRLINQEPSS 97
>gi|83858753|ref|ZP_00952275.1| Histone-like DNA-binding protein [Oceanicaulis alexandrii
HTCC2633]
gi|83853576|gb|EAP91428.1| Histone-like DNA-binding protein [Oceanicaulis alexandrii
HTCC2633]
Length = 88
Score = 82.1 bits (202), Expect = 2e-14, Method: Composition-based stats.
Identities = 23/88 (26%), Positives = 37/88 (42%), Gaps = 1/88 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS L IA K + ++ + + A + V++ GFG+F + R AR
Sbjct: 1 MNKSELAKAIADK-AGITKAQASDAIDAFADAIVGAAKSNDSVQLAGFGTFHAKHREARE 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKE 88
R P + + + K FR LK+
Sbjct: 60 VRNPRTGEKMMSKAKTQLAFRPASALKD 87
>gi|257469846|ref|ZP_05633938.1| DNA-binding protein HU [Fusobacterium ulcerans ATCC 49185]
gi|317064075|ref|ZP_07928560.1| DNA-binding protein HU [Fusobacterium ulcerans ATCC 49185]
gi|313689751|gb|EFS26586.1| DNA-binding protein HU [Fusobacterium ulcerans ATCC 49185]
Length = 90
Score = 82.1 bits (202), Expect = 2e-14, Method: Composition-based stats.
Identities = 26/91 (28%), Positives = 44/91 (48%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K + + KN ++ E+ VN+ L + L G + G+G + V++RAAR
Sbjct: 1 MTKKEFVE-LYAKNGGFTKKEAERAVNLFLASVEDTLVKGDDITFVGWGKWEVKERAARE 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P K + +E K F+ GK L +++
Sbjct: 60 VRNPQTNKKMRIEAKKAVKFKVGKTLADKVK 90
>gi|145590204|ref|YP_001156801.1| histone family protein DNA-binding protein [Polynucleobacter
necessarius subsp. asymbioticus QLW-P1DMWA-1]
gi|145048610|gb|ABP35237.1| HU family DNA-binding protein [Polynucleobacter necessarius subsp.
asymbioticus QLW-P1DMWA-1]
Length = 106
Score = 82.1 bits (202), Expect = 2e-14, Method: Composition-based stats.
Identities = 27/94 (28%), Positives = 48/94 (51%), Gaps = 1/94 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ LI IA + +++ E +N ++ + +A+ G V++ GFG+F+ KRAAR+
Sbjct: 14 NKAELIAAIAD-DAEISKAKAEFALNSAIDTIIKAVTKGDSVQLIGFGTFASGKRAARMG 72
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDS 95
R P + + + F AGK K+ +N
Sbjct: 73 RNPKTGEPLKIAAAKTVKFSAGKAFKDSVNKRKK 106
>gi|160883569|ref|ZP_02064572.1| hypothetical protein BACOVA_01541 [Bacteroides ovatus ATCC 8483]
gi|156110982|gb|EDO12727.1| hypothetical protein BACOVA_01541 [Bacteroides ovatus ATCC 8483]
Length = 88
Score = 82.1 bits (202), Expect = 2e-14, Method: Composition-based stats.
Identities = 26/87 (29%), Positives = 44/87 (50%), Gaps = 1/87 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI +A K +L++ + V+ ++E + + + G V + GFGSF +++R AR
Sbjct: 1 MNKSELIKEVALK-GQLSFNEATNAVDAIMETIAETMHKGESVTLVGFGSFVIQERKARN 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLK 87
P + + K FR G +K
Sbjct: 60 GHNPATGGSMVIPSKRQVKFRPGSKMK 86
>gi|152990572|ref|YP_001356294.1| DNA-binding protein HU [Nitratiruptor sp. SB155-2]
gi|151422433|dbj|BAF69937.1| DNA-binding protein HU [Nitratiruptor sp. SB155-2]
Length = 91
Score = 82.1 bits (202), Expect = 2e-14, Method: Composition-based stats.
Identities = 34/90 (37%), Positives = 53/90 (58%), Gaps = 1/90 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ + +A+K L+ +D +K+++ LE +T AL NG V GFG+F+ +RAAR
Sbjct: 1 MKKAEFVQIVAEK-AGLSKKDTQKVIDAALEVITDALKNGDEVAFIGFGTFTTAQRAARE 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
A+ P +V+ V V F+ GK LKE +
Sbjct: 60 AKVPGTDRVVKVPATRVVKFKVGKKLKEAV 89
>gi|119774748|ref|YP_927488.1| HU family DNA-binding protein [Shewanella amazonensis SB2B]
gi|119767248|gb|ABL99818.1| DNA-binding protein, HU family [Shewanella amazonensis SB2B]
Length = 91
Score = 82.1 bits (202), Expect = 3e-14, Method: Composition-based stats.
Identities = 22/90 (24%), Positives = 42/90 (46%), Gaps = 1/90 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K++L IA ++ + ++ + +L + QAL G + + FG+F +R R
Sbjct: 1 MNKATLTKFIAN-TTGVSQPEAKRQLEQILASIRQALEEGETLYLPQFGTFELRYHLPRQ 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P +++ V P F+ LK+ +
Sbjct: 60 VRNPKTGELMEVAGFNQPSFKPAPALKQLI 89
>gi|332704460|ref|ZP_08424548.1| histone family protein DNA-binding protein [Desulfovibrio
africanus str. Walvis Bay]
gi|332554609|gb|EGJ51653.1| histone family protein DNA-binding protein [Desulfovibrio
africanus str. Walvis Bay]
Length = 185
Score = 82.1 bits (202), Expect = 3e-14, Method: Composition-based stats.
Identities = 28/90 (31%), Positives = 43/90 (47%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M + +I T+ + K ++ +LE MT+ LA+GG V IRGFGSF V+ A R
Sbjct: 1 MTRQEIIDTLQTAADLPDKTTAGKALDAILESMTEELASGGSVLIRGFGSFHVKIVAERQ 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R + I + F G L++ +
Sbjct: 61 GRDFKTNQPIHIPAYRTVKFEPGVELRQFV 90
>gi|224373120|ref|YP_002607492.1| non-specific DNA-binding protein [Nautilia profundicola AmH]
gi|223589367|gb|ACM93103.1| non-specific DNA-binding protein [Nautilia profundicola AmH]
Length = 91
Score = 82.1 bits (202), Expect = 3e-14, Method: Composition-based stats.
Identities = 38/92 (41%), Positives = 53/92 (57%), Gaps = 1/92 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI +A+K+ L+ +DV +++ +E M +AL G +V GFGSF V RA R+
Sbjct: 1 MKKSELIAAVAEKS-GLSKKDVNAVIDATIEAMEEALKAGKKVSFIGFGSFEVVTRAPRV 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
AR P K + + E F+ GK LKE LN
Sbjct: 60 ARVPGTNKEVKIPETKSVKFKVGKKLKELLNK 91
>gi|163746487|ref|ZP_02153845.1| integration host factor, alpha subunit [Oceanibulbus indolifex
HEL-45]
gi|161380372|gb|EDQ04783.1| integration host factor, alpha subunit [Oceanibulbus indolifex
HEL-45]
Length = 92
Score = 82.1 bits (202), Expect = 3e-14, Method: Composition-based stats.
Identities = 26/86 (30%), Positives = 47/86 (54%), Gaps = 1/86 (1%)
Query: 5 SLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLARAP 64
L + ++ L+ + ++V +LE M+ AL G +V+I FG+FSVR + AR+ R P
Sbjct: 2 DLSEAVFRE-VGLSRNESAQLVEAVLEHMSDALVEGEQVKISSFGTFSVRDKTARVGRNP 60
Query: 65 LAQKVISVEEKMVPFFRAGKNLKERL 90
+ + + + V FR +K+R+
Sbjct: 61 KTGEEVPINPRRVLTFRPSHLMKDRV 86
>gi|186471029|ref|YP_001862347.1| histone family protein DNA-binding protein [Burkholderia phymatum
STM815]
gi|184197338|gb|ACC75301.1| histone family protein DNA-binding protein [Burkholderia phymatum
STM815]
Length = 124
Score = 81.7 bits (201), Expect = 3e-14, Method: Composition-based stats.
Identities = 25/95 (26%), Positives = 42/95 (44%), Gaps = 4/95 (4%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRG---FGSFSVRKRA 57
M K LI +A + + + ++ +LE +T A+ G +++ FGSFS R
Sbjct: 1 MNKQELIDAVAASTGE-SKASTGEALDAILEAVTSAVTRGETIQLIQLIGFGSFSTGARL 59
Query: 58 ARLARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R R I++ F AGK+ E +N+
Sbjct: 60 ERTGRNLSTGDTITIAAAKTVKFTAGKSFMEAVNA 94
>gi|237733822|ref|ZP_04564303.1| DNA-binding protein HU [Mollicutes bacterium D7]
gi|229383160|gb|EEO33251.1| DNA-binding protein HU [Coprobacillus sp. D7]
Length = 90
Score = 81.7 bits (201), Expect = 3e-14, Method: Composition-based stats.
Identities = 27/91 (29%), Positives = 48/91 (52%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K L+ T++K+ L +D E +V+ + +T+++ G +V I GFG+F V R AR
Sbjct: 1 MNKKELVETVSKER-NLTKKDAEILVDTVFNTITRSVVEGDKVLISGFGTFKVNDRKARK 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
+P Q+ + + F+ LK+ +N
Sbjct: 60 GISPKTQEEMVIPASKTVTFKPSNRLKDAMN 90
>gi|159900715|ref|YP_001546962.1| histone family protein DNA-binding protein [Herpetosiphon
aurantiacus ATCC 23779]
gi|159893754|gb|ABX06834.1| histone family protein DNA-binding protein [Herpetosiphon
aurantiacus ATCC 23779]
Length = 95
Score = 81.7 bits (201), Expect = 3e-14, Method: Composition-based stats.
Identities = 25/87 (28%), Positives = 50/87 (57%), Gaps = 1/87 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K I +A++ ++ ++ ++V+ +L+ +++ L G +V + GFG+F VR+R AR
Sbjct: 1 MQKIEFIAEVAERT-GISKKEARRVVDAMLDVVSERLQAGEKVVLTGFGTFEVRERQARQ 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLK 87
P ++ +++E P F A +LK
Sbjct: 60 GVNPKTRERMTIEATKTPGFSASNSLK 86
>gi|297624967|ref|YP_003706401.1| histone family protein DNA-binding protein [Truepera radiovictrix
DSM 17093]
gi|297166147|gb|ADI15858.1| histone family protein DNA-binding protein [Truepera radiovictrix
DSM 17093]
Length = 99
Score = 81.7 bits (201), Expect = 3e-14, Method: Composition-based stats.
Identities = 30/88 (34%), Positives = 54/88 (61%), Gaps = 1/88 (1%)
Query: 3 KSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLAR 62
K+ L+ +A+ + +DV+ IV+ ++++++Q L NG +V++ GFG+F VR+R AR
Sbjct: 9 KADLVDKVAEDT-GMRKKDVKTIVDTMIDQVSQHLNNGDKVQLTGFGTFEVRERRARTGV 67
Query: 63 APLAQKVISVEEKMVPFFRAGKNLKERL 90
P + I + P F+ GK LKE++
Sbjct: 68 KPGTTERIEIPASKYPAFKPGKALKEKI 95
>gi|53802893|ref|YP_115338.1| prophage MuMc02, DNA-binding protein HU [Methylococcus capsulatus
str. Bath]
gi|53756654|gb|AAU90945.1| prophage MuMc02, DNA-binding protein HU [Methylococcus capsulatus
str. Bath]
Length = 95
Score = 81.7 bits (201), Expect = 3e-14, Method: Composition-based stats.
Identities = 30/91 (32%), Positives = 45/91 (49%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAK-KNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAAR 59
M +S LI I + N L +++++ L +ALANG V I G +V++RAAR
Sbjct: 1 MNQSQLINAIHEDANGSLTKTVIQRVLIALANVAQEALANGDEVTIPGVAKLTVKERAAR 60
Query: 60 LARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P + + + K V K LKER+
Sbjct: 61 TGRNPQTGETVEIPAKRVARASFVKALKERV 91
>gi|84514971|ref|ZP_01002334.1| DNA-binding protein HU [Loktanella vestfoldensis SKA53]
gi|84511130|gb|EAQ07584.1| DNA-binding protein HU [Loktanella vestfoldensis SKA53]
Length = 96
Score = 81.7 bits (201), Expect = 3e-14, Method: Composition-based stats.
Identities = 24/91 (26%), Positives = 41/91 (45%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ L+ IA + ++ + ++ + +T +A GG V + G G R+R R+
Sbjct: 6 MTKAQLVAAIADQT-GMDKKAAGAALDAVTGIITSEVAGGGAVTLPGVGKIYCRERPERM 64
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + I E V K LK+ +N
Sbjct: 65 VRNPATGEQIKKEADKVVKVTIAKALKDSVN 95
>gi|319900802|ref|YP_004160530.1| bacterial nucleoid protein Hbs [Bacteroides helcogenes P 36-108]
gi|319415833|gb|ADV42944.1| bacterial nucleoid protein Hbs [Bacteroides helcogenes P 36-108]
Length = 88
Score = 81.7 bits (201), Expect = 3e-14, Method: Composition-based stats.
Identities = 28/86 (32%), Positives = 48/86 (55%), Gaps = 1/86 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI +A + L D +K ++ + +T+A+ G +V + GFG+F+V +R+AR+
Sbjct: 1 MNKAELISAMAAE-AGLTKADSKKALDAFVVSVTKAMKAGEKVSLVGFGTFAVAERSARM 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNL 86
P +K I + K V F+ G L
Sbjct: 60 GINPSTKKPIEIAAKKVVKFKPGAEL 85
>gi|238810006|dbj|BAH69796.1| hypothetical protein [Mycoplasma fermentans PG18]
Length = 98
Score = 81.7 bits (201), Expect = 3e-14, Method: Composition-based stats.
Identities = 21/91 (23%), Positives = 40/91 (43%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K + IA+ ++ + ++ + L + + L +V++ G+F + R R
Sbjct: 8 MTKKEFVQKIAE-MLEVPVRVADQYFDAFLFVLKEQLIAEDKVQLSDLGTFETKIRRGRE 66
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
P + I V EK V F K L++ +N
Sbjct: 67 TINPFTNEPIQVPEKRVVKFTPSKYLRDIVN 97
>gi|171463686|ref|YP_001797799.1| integration host factor, alpha subunit [Polynucleobacter
necessarius subsp. necessarius STIR1]
gi|171193224|gb|ACB44185.1| integration host factor, alpha subunit [Polynucleobacter
necessarius subsp. necessarius STIR1]
Length = 107
Score = 81.7 bits (201), Expect = 3e-14, Method: Composition-based stats.
Identities = 24/91 (26%), Positives = 49/91 (53%), Gaps = 1/91 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ L + + LN ++ + +++ + + ++L G V+I GFG+F +R ++AR
Sbjct: 11 TKNELSEALFDQ-VGLNKREAKDMIDAFFDRIGRSLEAGVEVKISGFGNFQLRNKSARPG 69
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P ++I + + V F A + LK+ + S
Sbjct: 70 RNPKTGQMIPIAARRVVTFHASQKLKDVVES 100
>gi|229821233|ref|YP_002882759.1| histone family protein DNA-binding protein [Beutenbergia cavernae
DSM 12333]
gi|229567146|gb|ACQ80997.1| histone family protein DNA-binding protein [Beutenbergia cavernae
DSM 12333]
Length = 93
Score = 81.7 bits (201), Expect = 3e-14, Method: Composition-based stats.
Identities = 22/89 (24%), Positives = 38/89 (42%), Gaps = 1/89 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
++ L+ IA K L + ++ L + + +L+ G V++ G S +RAAR
Sbjct: 4 NRTELVAAIADK-ASLTKVQADAALSALQDVLVTSLSKGETVKVTGLLSVERVERAARTG 62
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P + I + AG LK +
Sbjct: 63 RNPRTGEEIQIPAGYGVKISAGSVLKSAV 91
>gi|83952159|ref|ZP_00960891.1| integration host factor, alpha subunit [Roseovarius nubinhibens
ISM]
gi|83837165|gb|EAP76462.1| integration host factor, alpha subunit [Roseovarius nubinhibens
ISM]
Length = 92
Score = 81.7 bits (201), Expect = 3e-14, Method: Composition-based stats.
Identities = 28/86 (32%), Positives = 49/86 (56%), Gaps = 1/86 (1%)
Query: 5 SLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLARAP 64
L I ++ L+ D ++V +L+ M+ AL G +V+I FG+FSVR+++AR+ R P
Sbjct: 2 DLSEAIFRE-VGLSRNDSAQLVESVLDHMSDALVRGEQVKISSFGTFSVRQKSARMGRNP 60
Query: 65 LAQKVISVEEKMVPFFRAGKNLKERL 90
+ ++ + V FR +KER+
Sbjct: 61 KTGTEVPIDPRRVLTFRPSHLMKERV 86
>gi|332523074|ref|ZP_08399326.1| DNA-binding protein HU-beta [Streptococcus porcinus str.
Jelinkova 176]
gi|332314338|gb|EGJ27323.1| DNA-binding protein HU-beta [Streptococcus porcinus str.
Jelinkova 176]
Length = 91
Score = 81.7 bits (201), Expect = 3e-14, Method: Composition-based stats.
Identities = 31/90 (34%), Positives = 47/90 (52%), Gaps = 1/90 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K LI +A+ L +D V+ + + L+ G +V++ GFG+F VR+RAAR
Sbjct: 3 NKQDLIAKVAEAT-DLTKKDSAAAVDAVFAAIEGFLSKGEKVQLIGFGNFEVRERAARKG 61
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P I + VP F+AGK LK+ +
Sbjct: 62 RNPQTGAEIEIAASKVPAFKAGKALKDAVK 91
>gi|225627276|ref|ZP_03785313.1| integration host factor, alpha subunit [Brucella ceti str. Cudo]
gi|237815217|ref|ZP_04594215.1| integration host factor, alpha subunit [Brucella abortus str. 2308
A]
gi|297248134|ref|ZP_06931852.1| integration host factor subunit alpha [Brucella abortus bv. 5 str.
B3196]
gi|306841978|ref|ZP_07474652.1| integration host factor, alpha subunit [Brucella sp. BO2]
gi|225617281|gb|EEH14326.1| integration host factor, alpha subunit [Brucella ceti str. Cudo]
gi|237790054|gb|EEP64264.1| integration host factor, alpha subunit [Brucella abortus str. 2308
A]
gi|297175303|gb|EFH34650.1| integration host factor subunit alpha [Brucella abortus bv. 5 str.
B3196]
gi|306287906|gb|EFM59323.1| integration host factor, alpha subunit [Brucella sp. BO2]
Length = 128
Score = 81.7 bits (201), Expect = 3e-14, Method: Composition-based stats.
Identities = 24/89 (26%), Positives = 47/89 (52%), Gaps = 1/89 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
++ L + +K L+ + +V M+L+E+ A+ NG V++ F +F VR + R+
Sbjct: 28 TRADLAEAVYRK-VGLSRTESAALVEMILDEVCDAIVNGETVKLSSFATFQVRDKNERIG 86
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P + + + + V F+A LK+R+
Sbjct: 87 RNPKTGEEVPILPRRVMTFKASNVLKQRI 115
>gi|284928884|ref|YP_003421406.1| nucleoid protein Hbs [cyanobacterium UCYN-A]
gi|284809343|gb|ADB95048.1| bacterial nucleoid protein Hbs [cyanobacterium UCYN-A]
Length = 93
Score = 81.7 bits (201), Expect = 3e-14, Method: Composition-based stats.
Identities = 32/90 (35%), Positives = 49/90 (54%), Gaps = 1/90 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K LI T+A K + + + I++ +E + +A+A +V + GFGSF R R AR
Sbjct: 1 MNKGELIDTVANK-ADVTKKQADSIISATIETIMEAVAGDDKVTLVGFGSFEARNRKARE 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P + +S+ VP F AGK KE++
Sbjct: 60 GRNPKTNEKMSIPATKVPAFSAGKLFKEKV 89
>gi|149911612|ref|ZP_01900224.1| integration host factor alpha subunit [Moritella sp. PE36]
gi|149805333|gb|EDM65346.1| integration host factor alpha subunit [Moritella sp. PE36]
Length = 97
Score = 81.7 bits (201), Expect = 3e-14, Method: Composition-based stats.
Identities = 23/89 (25%), Positives = 47/89 (52%), Gaps = 1/89 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ + T+ + L+ ++ +++V EE+ +L +V+I GFG+F +R + R
Sbjct: 4 TKADIAETLFN-DVGLSKRESKEMVEAFFEEIRLSLEVNEQVKISGFGNFDLRDKGERPG 62
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P + I + + V F+ G+ LK ++
Sbjct: 63 RNPKTGEDIPITARRVVTFKPGQKLKAKV 91
>gi|284009059|emb|CBA76026.1| DNA-binding protein HU-alpha (HU-2) [Arsenophonus nasoniae]
Length = 98
Score = 81.7 bits (201), Expect = 3e-14, Method: Composition-based stats.
Identities = 32/91 (35%), Positives = 48/91 (52%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K ++ + +K LN + + L+E +T AL G +V+ GFG+F RAAR+
Sbjct: 9 MKKGDVVQYVMQK-ANLNKTQAKNALEALIECITDALKEGEQVQFVGFGTFRTNHRAARI 67
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + +E VP F AGK+LKE +
Sbjct: 68 GRNPKTGAELKIEAANVPVFVAGKSLKEAVK 98
>gi|269214903|ref|ZP_06158902.1| integration host factor subunit beta [Neisseria lactamica ATCC
23970]
gi|269208725|gb|EEZ75180.1| integration host factor subunit beta [Neisseria lactamica ATCC
23970]
Length = 80
Score = 81.7 bits (201), Expect = 3e-14, Method: Composition-based stats.
Identities = 31/65 (47%), Positives = 43/65 (66%)
Query: 27 NMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLARAPLAQKVISVEEKMVPFFRAGKNL 86
L + MT++LA G R+EIRGFGSF + R AR+ R P + + V EK VP F+ GK L
Sbjct: 8 ESLGDTMTRSLARGQRIEIRGFGSFDLNHRPARIGRNPKTGERVEVPEKHVPHFKPGKEL 67
Query: 87 KERLN 91
+ER++
Sbjct: 68 RERVD 72
>gi|186687124|ref|YP_001870267.1| histone family protein DNA-binding protein [Nostoc punctiforme
PCC 73102]
gi|186469427|gb|ACC85226.1| histone family protein DNA-binding protein [Nostoc punctiforme
PCC 73102]
Length = 91
Score = 81.7 bits (201), Expect = 3e-14, Method: Composition-based stats.
Identities = 32/90 (35%), Positives = 53/90 (58%), Gaps = 1/90 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K L+ +A K + + +++++ L +T+A+ANG +V + GFGSF R+RA R
Sbjct: 1 MNKGELVDAVAAKT-NITKKQADEVISAFLSVVTEAVANGEKVTLIGFGSFERRERAERE 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P Q+ +++ VP F AGK KE++
Sbjct: 60 GRNPKTQETMTIPATKVPAFSAGKQFKEKV 89
>gi|325955263|ref|YP_004238923.1| histone family protein DNA-binding protein [Weeksella virosa DSM
16922]
gi|323437881|gb|ADX68345.1| histone family protein DNA-binding protein [Weeksella virosa DSM
16922]
Length = 92
Score = 81.7 bits (201), Expect = 3e-14, Method: Composition-based stats.
Identities = 33/93 (35%), Positives = 49/93 (52%), Gaps = 1/93 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI IA + ++ + +K +N +T ALA G +V + GFG+FS +RAAR
Sbjct: 1 MNKSELIDAIAA-DAGISKEAAKKALNSFTTNVTNALAKGEKVALVGFGTFSTSERAART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSP 93
P +K I + K V F+AG L ++
Sbjct: 60 GINPQTKKEIQIAAKTVAKFKAGSELSAAVDKK 92
>gi|237807496|ref|YP_002891936.1| histone family protein DNA-binding protein [Tolumonas auensis DSM
9187]
gi|237499757|gb|ACQ92350.1| histone family protein DNA-binding protein [Tolumonas auensis DSM
9187]
Length = 91
Score = 81.7 bits (201), Expect = 3e-14, Method: Composition-based stats.
Identities = 25/92 (27%), Positives = 44/92 (47%), Gaps = 1/92 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI +A + ++ + L + + + L G + I G G+FS+ +AARL
Sbjct: 1 MKKAELINAVATEM-NTAKHIADEALFALGKVLQRQLVAGEPLLIPGIGTFSILNKAARL 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P + + + K F+A K L + +N
Sbjct: 60 GRNPQTGETVEIAAKKTVKFKAAKALADAVNE 91
>gi|152966755|ref|YP_001362539.1| histone family protein DNA-binding protein [Kineococcus
radiotolerans SRS30216]
gi|151361272|gb|ABS04275.1| histone family protein DNA-binding protein [Kineococcus
radiotolerans SRS30216]
Length = 187
Score = 81.7 bits (201), Expect = 3e-14, Method: Composition-based stats.
Identities = 23/90 (25%), Positives = 44/90 (48%), Gaps = 2/90 (2%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ ++ + + ++ V ++E + +A G ++ I GFG+F + R AR
Sbjct: 1 MNKTEMVDALETRLGG--RKEATAAVEAVIELIQLTVAKGDKIAISGFGTFEKQARNART 58
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P + + +++ VP FR G KE +
Sbjct: 59 GRNPRTGEAVKIKKTSVPRFRPGTAFKEIV 88
>gi|260222772|emb|CBA32664.1| Integration host factor subunit beta [Curvibacter putative
symbiont of Hydra magnipapillata]
Length = 103
Score = 81.7 bits (201), Expect = 3e-14, Method: Composition-based stats.
Identities = 28/90 (31%), Positives = 45/90 (50%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M +S LI +A + +++ +D E V ++ +EM AL G R+EIR FG R R +
Sbjct: 1 MNRSDLINQLANRFNEIDKKDTELAVRLIFDEMANALVKGRRIEIRNFGILQARTRPSTT 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P + + F+ GK L+ R+
Sbjct: 61 YRNPRTGEKLKRRSTRSIRFKEGKELRSRM 90
>gi|26991989|ref|NP_747414.1| histone family protein DNA-binding protein [Pseudomonas putida
KT2440]
gi|148550422|ref|YP_001270524.1| histone family protein DNA-binding protein [Pseudomonas putida
F1]
gi|24987121|gb|AAN70878.1|AE016732_3 DNA-binding protein HU-alpha [Pseudomonas putida KT2440]
gi|148514480|gb|ABQ81340.1| bacterial nucleoid protein HU alpha subunit [Pseudomonas putida
F1]
gi|313501287|gb|ADR62653.1| HupA [Pseudomonas putida BIRD-1]
Length = 99
Score = 81.7 bits (201), Expect = 3e-14, Method: Composition-based stats.
Identities = 29/95 (30%), Positives = 48/95 (50%), Gaps = 2/95 (2%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K L IA K L + +++N +L+ +T AL V + GFG+F R R AR
Sbjct: 1 MRKPELAAVIADK-ADLTKEKANQVLNAILDSITGALDK-DTVTLVGFGTFEKRHRGART 58
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDS 95
+ P + + ++ F+ GKNL++ +N+P
Sbjct: 59 GKNPQTGEPVKIKASNTVAFKPGKNLRDSVNAPAK 93
>gi|296113089|ref|YP_003627027.1| integration host factor subunit beta [Moraxella catarrhalis RH4]
gi|295920783|gb|ADG61134.1| integration host factor subunit beta [Moraxella catarrhalis RH4]
gi|326560082|gb|EGE10472.1| integration host factor subunit beta [Moraxella catarrhalis
46P47B1]
gi|326560465|gb|EGE10847.1| integration host factor subunit beta [Moraxella catarrhalis 7169]
gi|326561668|gb|EGE12005.1| integration host factor subunit beta [Moraxella catarrhalis
103P14B1]
gi|326564204|gb|EGE14440.1| integration host factor subunit beta [Moraxella catarrhalis
12P80B1]
gi|326565803|gb|EGE15965.1| integration host factor subunit beta [Moraxella catarrhalis BC1]
gi|326570456|gb|EGE20496.1| integration host factor subunit beta [Moraxella catarrhalis BC8]
gi|326571139|gb|EGE21163.1| integration host factor subunit beta [Moraxella catarrhalis BC7]
gi|326573433|gb|EGE23401.1| integration host factor subunit beta [Moraxella catarrhalis
101P30B1]
gi|326575671|gb|EGE25594.1| integration host factor subunit beta [Moraxella catarrhalis CO72]
gi|326577137|gb|EGE27031.1| integration host factor subunit beta [Moraxella catarrhalis O35E]
Length = 99
Score = 81.7 bits (201), Expect = 3e-14, Method: Composition-based stats.
Identities = 35/91 (38%), Positives = 56/91 (61%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
+ KS+LI +A +L V++ V +++ M L GR+E+RGFGSF + R+AR+
Sbjct: 5 INKSNLIANLASVCEELEEDVVDEAVRLMIAMMVNELVYDGRIEVRGFGSFCLHHRSARI 64
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
AR P + +SV+ K P+F+ GK L+E +N
Sbjct: 65 ARNPRTGESVSVKAKATPYFKPGKALRESVN 95
>gi|294677449|ref|YP_003578064.1| integration host factor subunit alpha [Rhodobacter capsulatus SB
1003]
gi|294476269|gb|ADE85657.1| integration host factor, alpha subunit [Rhodobacter capsulatus SB
1003]
Length = 100
Score = 81.7 bits (201), Expect = 3e-14, Method: Composition-based stats.
Identities = 24/95 (25%), Positives = 49/95 (51%), Gaps = 1/95 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
+ L + ++ L+ + ++V +L+ M+ AL G V+I FG+FSVR + +R+
Sbjct: 7 TRMDLSEAVFRE-VGLSRNESAQLVETVLQHMSDALVRGETVKISSFGTFSVRDKTSRMG 65
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDST 96
R P + + + + V FR +K+R+ ++
Sbjct: 66 RNPKTGEEVPISPRRVLSFRPSHLMKDRVAEGNAK 100
>gi|269796894|ref|YP_003316349.1| nucleoid DNA-binding protein [Sanguibacter keddieii DSM 10542]
gi|269099079|gb|ACZ23515.1| bacterial nucleoid DNA-binding protein [Sanguibacter keddieii DSM
10542]
Length = 94
Score = 81.4 bits (200), Expect = 4e-14, Method: Composition-based stats.
Identities = 25/89 (28%), Positives = 43/89 (48%), Gaps = 1/89 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
++ L+ IA K+ L D + ++ L E + ++L+ G V++ G S +RAAR
Sbjct: 4 NRTDLVSAIAGKS-GLTKTDADAALSALQEVLVESLSAGEAVKVTGLLSVERVERAARTG 62
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P + IS+ AG LK+ +
Sbjct: 63 RNPRTGEEISIPAGFGVKISAGSLLKKAV 91
>gi|320528391|ref|ZP_08029553.1| DNA-binding protein HU [Solobacterium moorei F0204]
gi|320131305|gb|EFW23873.1| DNA-binding protein HU [Solobacterium moorei F0204]
Length = 94
Score = 81.4 bits (200), Expect = 4e-14, Method: Composition-based stats.
Identities = 33/90 (36%), Positives = 56/90 (62%), Gaps = 1/90 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K S+ +A+K+ L ++ +I++++ + ++ L +GGRV+I GFG F V+ RAAR
Sbjct: 6 NKKSIAELVAEKH-NLTKKEAAEIIDLVFDTVSGTLKDGGRVDISGFGKFEVKTRAARTG 64
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
P ++ I++ E VP F+A KNLKE +
Sbjct: 65 INPQTKETITIPESKVPGFKAAKNLKELVK 94
>gi|332827350|gb|EGK00110.1| hypothetical protein HMPREF9455_03576 [Dysgonomonas gadei ATCC
BAA-286]
Length = 88
Score = 81.4 bits (200), Expect = 4e-14, Method: Composition-based stats.
Identities = 32/86 (37%), Positives = 51/86 (59%), Gaps = 1/86 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI IA+K+ L+ D +K + +E +T + GG+V + GFG+FSV ++AAR
Sbjct: 1 MNKTELINAIAEKS-GLSKVDSKKALEAFIESVTGEVKAGGKVALVGFGTFSVTQKAARK 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNL 86
P + VI++ K F+AG +L
Sbjct: 60 GINPRTKAVINIPAKKTVKFKAGADL 85
>gi|13476953|ref|NP_108523.1| integration host factor subunit alpha [Mesorhizobium loti
MAFF303099]
gi|260460934|ref|ZP_05809184.1| integration host factor, alpha subunit [Mesorhizobium
opportunistum WSM2075]
gi|21362612|sp|Q982Z7|IHFA_RHILO RecName: Full=Integration host factor subunit alpha;
Short=IHF-alpha
gi|14027716|dbj|BAB54309.1| integration host factor alpha subunit [Mesorhizobium loti
MAFF303099]
gi|259033511|gb|EEW34772.1| integration host factor, alpha subunit [Mesorhizobium
opportunistum WSM2075]
Length = 107
Score = 81.4 bits (200), Expect = 4e-14, Method: Composition-based stats.
Identities = 21/89 (23%), Positives = 46/89 (51%), Gaps = 1/89 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
++ L + +K L+ + ++V +L+E+ +A+ G V++ F +F VR + R+
Sbjct: 7 TRADLAEAVYRK-VGLSRTESAELVEAVLDEICEAIVRGETVKLSSFATFHVRSKNERIG 65
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P + + + + V F++ LK R+
Sbjct: 66 RNPKTGEEVPILPRRVMTFKSSNVLKNRI 94
>gi|320353752|ref|YP_004195091.1| histone family protein DNA-binding protein [Desulfobulbus
propionicus DSM 2032]
gi|320122254|gb|ADW17800.1| histone family protein DNA-binding protein [Desulfobulbus
propionicus DSM 2032]
Length = 90
Score = 81.4 bits (200), Expect = 4e-14, Method: Composition-based stats.
Identities = 29/91 (31%), Positives = 50/91 (54%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K L+ ++A+ +++ EK +N +L ++ ALA G +V + GFG+FS KR R
Sbjct: 1 MNKKELVESMAEA-AEISKAAAEKALNGMLMAVSDALAKGDKVTLVGFGTFSTVKRTERK 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
A+ P +I + K + F+ G L + +N
Sbjct: 60 AKNPRTGAMIEIPSKTIAKFKPGSKLSDAVN 90
>gi|118580291|ref|YP_901541.1| histone family protein DNA-binding protein [Pelobacter
propionicus DSM 2379]
gi|118503001|gb|ABK99483.1| bacterial nucleoid protein Hbs [Pelobacter propionicus DSM 2379]
Length = 94
Score = 81.4 bits (200), Expect = 4e-14, Method: Composition-based stats.
Identities = 22/95 (23%), Positives = 47/95 (49%), Gaps = 1/95 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ + ++ N ++ ++V + + L +G +++I GFG+F V+++A R
Sbjct: 1 MTKADIFEKVS-SNLGYTKKESAELVEAVFSLIKSTLESGEKIKIAGFGNFEVKQKADRR 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDS 95
R P + I++E + + F+ LK +N
Sbjct: 60 GRNPQNGETITIEARRILTFKPSGVLKTAINGAKQ 94
>gi|308050479|ref|YP_003914045.1| histone family protein DNA-binding protein [Ferrimonas balearica
DSM 9799]
gi|307632669|gb|ADN76971.1| histone family protein DNA-binding protein [Ferrimonas balearica
DSM 9799]
Length = 96
Score = 81.4 bits (200), Expect = 4e-14, Method: Composition-based stats.
Identities = 25/89 (28%), Positives = 40/89 (44%), Gaps = 1/89 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ L + + L D + +V+ EE+ L G V++ GFG F +R + R
Sbjct: 4 TKADLTAHLVD-HLHLKVTDAKVLVDTFFEEIRHTLEKGEEVKLSGFGVFHLRDKNPRPG 62
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P + + + V F AG LK R+
Sbjct: 63 RNPKTGEEHEITARRVVTFAAGGKLKGRV 91
>gi|15964977|ref|NP_385330.1| integration host factor subunit alpha [Sinorhizobium meliloti
1021]
gi|150396054|ref|YP_001326521.1| integration host factor subunit alpha [Sinorhizobium medicae
WSM419]
gi|307301048|ref|ZP_07580817.1| integration host factor, alpha subunit [Sinorhizobium meliloti
BL225C]
gi|307317782|ref|ZP_07597220.1| integration host factor, alpha subunit [Sinorhizobium meliloti
AK83]
gi|21362610|sp|Q92QT3|IHFA_RHIME RecName: Full=Integration host factor subunit alpha;
Short=IHF-alpha
gi|166918530|sp|A6U7Q6|IHFA_SINMW RecName: Full=Integration host factor subunit alpha;
Short=IHF-alpha
gi|15074156|emb|CAC45803.1| Probable integration host factor alpha-subunit [Sinorhizobium
meliloti 1021]
gi|150027569|gb|ABR59686.1| integration host factor, alpha subunit [Sinorhizobium medicae
WSM419]
gi|306896544|gb|EFN27292.1| integration host factor, alpha subunit [Sinorhizobium meliloti
AK83]
gi|306904003|gb|EFN34589.1| integration host factor, alpha subunit [Sinorhizobium meliloti
BL225C]
Length = 112
Score = 81.4 bits (200), Expect = 4e-14, Method: Composition-based stats.
Identities = 21/89 (23%), Positives = 47/89 (52%), Gaps = 1/89 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
++ L ++ +K L+ + ++V +++E+ A+ G V++ F +F VR + R+
Sbjct: 7 TRADLAESVFRK-VGLSRTESAELVETVIDEICNAIVRGESVKLSSFATFQVRDKNERIG 65
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P + + + + V F+A LK+R+
Sbjct: 66 RNPKTGEEVPISPRRVMTFKASNVLKQRV 94
>gi|261414759|ref|YP_003248442.1| histone family protein DNA-binding protein [Fibrobacter
succinogenes subsp. succinogenes S85]
gi|261371215|gb|ACX73960.1| histone family protein DNA-binding protein [Fibrobacter
succinogenes subsp. succinogenes S85]
gi|302327271|gb|ADL26472.1| DNA-binding protein HU [Fibrobacter succinogenes subsp.
succinogenes S85]
Length = 116
Score = 81.4 bits (200), Expect = 4e-14, Method: Composition-based stats.
Identities = 24/92 (26%), Positives = 48/92 (52%), Gaps = 1/92 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
+ K ++ IA + + IV L++ ++ + G +E+RGFG F ++R R
Sbjct: 8 ITKKEIVDEIASQT-GFTQVKTKVIVEELIDAISNCVIEGNNIELRGFGRFKNKQRKERR 66
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P +++++ K+ P F K+L E++N+
Sbjct: 67 TRNPKTGELVNIPAKVRPVFEPSKDLIEKINN 98
>gi|23501665|ref|NP_697792.1| integration host factor subunit alpha [Brucella suis 1330]
gi|62289729|ref|YP_221522.1| integration host factor subunit alpha [Brucella abortus bv. 1
str. 9-941]
gi|82699658|ref|YP_414232.1| integration host factor subunit alpha [Brucella melitensis biovar
Abortus 2308]
gi|161618744|ref|YP_001592631.1| integration host factor subunit alpha [Brucella canis ATCC 23365]
gi|189023978|ref|YP_001934746.1| integration host factor subunit alpha [Brucella abortus S19]
gi|225852293|ref|YP_002732526.1| integration host factor subunit alpha [Brucella melitensis ATCC
23457]
gi|254689038|ref|ZP_05152292.1| integration host factor subunit alpha [Brucella abortus bv. 6
str. 870]
gi|254693521|ref|ZP_05155349.1| integration host factor subunit alpha [Brucella abortus bv. 3
str. Tulya]
gi|254697173|ref|ZP_05159001.1| integration host factor subunit alpha [Brucella abortus bv. 2
str. 86/8/59]
gi|254701551|ref|ZP_05163379.1| integration host factor subunit alpha [Brucella suis bv. 5 str.
513]
gi|254704099|ref|ZP_05165927.1| integration host factor subunit alpha [Brucella suis bv. 3 str.
686]
gi|254707000|ref|ZP_05168828.1| integration host factor subunit alpha [Brucella pinnipedialis
M163/99/10]
gi|254709891|ref|ZP_05171702.1| integration host factor subunit alpha [Brucella pinnipedialis
B2/94]
gi|254713892|ref|ZP_05175703.1| integration host factor subunit alpha [Brucella ceti M644/93/1]
gi|254717051|ref|ZP_05178862.1| integration host factor subunit alpha [Brucella ceti M13/05/1]
gi|254718895|ref|ZP_05180706.1| integration host factor subunit alpha [Brucella sp. 83/13]
gi|254730069|ref|ZP_05188647.1| integration host factor subunit alpha [Brucella abortus bv. 4
str. 292]
gi|256031384|ref|ZP_05444998.1| integration host factor subunit alpha [Brucella pinnipedialis
M292/94/1]
gi|256044463|ref|ZP_05447367.1| integration host factor subunit alpha [Brucella melitensis bv. 1
str. Rev.1]
gi|256113307|ref|ZP_05454175.1| integration host factor subunit alpha [Brucella melitensis bv. 3
str. Ether]
gi|256159505|ref|ZP_05457273.1| integration host factor subunit alpha [Brucella ceti M490/95/1]
gi|256254791|ref|ZP_05460327.1| integration host factor subunit alpha [Brucella ceti B1/94]
gi|256257288|ref|ZP_05462824.1| integration host factor subunit alpha [Brucella abortus bv. 9
str. C68]
gi|256264202|ref|ZP_05466734.1| integration host factor subunit alpha [Brucella melitensis bv. 2
str. 63/9]
gi|256369210|ref|YP_003106718.1| integration host factor alpha subunit [Brucella microti CCM 4915]
gi|260168517|ref|ZP_05755328.1| integration host factor subunit alpha [Brucella sp. F5/99]
gi|260545518|ref|ZP_05821259.1| integration host factor subunit alpha [Brucella abortus NCTC
8038]
gi|260563814|ref|ZP_05834300.1| integration host factor subunit alpha [Brucella melitensis bv. 1
str. 16M]
gi|260566653|ref|ZP_05837123.1| integration host factor subunit alpha [Brucella suis bv. 4 str.
40]
gi|260754533|ref|ZP_05866881.1| integration host factor subunit alpha [Brucella abortus bv. 6
str. 870]
gi|260757754|ref|ZP_05870102.1| integration host factor subunit alpha [Brucella abortus bv. 4
str. 292]
gi|260761579|ref|ZP_05873922.1| integration host factor subunit alpha [Brucella abortus bv. 2
str. 86/8/59]
gi|260883561|ref|ZP_05895175.1| integration host factor subunit alpha [Brucella abortus bv. 9
str. C68]
gi|261213781|ref|ZP_05928062.1| integration host factor subunit alpha [Brucella abortus bv. 3
str. Tulya]
gi|261218861|ref|ZP_05933142.1| integration host factor subunit alpha [Brucella ceti M13/05/1]
gi|261221971|ref|ZP_05936252.1| integration host factor subunit alpha [Brucella ceti B1/94]
gi|261314467|ref|ZP_05953664.1| integration host factor subunit alpha [Brucella pinnipedialis
M163/99/10]
gi|261317433|ref|ZP_05956630.1| integration host factor subunit alpha [Brucella pinnipedialis
B2/94]
gi|261321640|ref|ZP_05960837.1| integration host factor subunit alpha [Brucella ceti M644/93/1]
gi|261752100|ref|ZP_05995809.1| integration host factor subunit alpha [Brucella suis bv. 5 str.
513]
gi|261754759|ref|ZP_05998468.1| integration host factor subunit alpha [Brucella suis bv. 3 str.
686]
gi|261757987|ref|ZP_06001696.1| integration host factor subunit alpha [Brucella sp. F5/99]
gi|265983880|ref|ZP_06096615.1| integration host factor subunit alpha [Brucella sp. 83/13]
gi|265988470|ref|ZP_06101027.1| integration host factor subunit alpha [Brucella pinnipedialis
M292/94/1]
gi|265990884|ref|ZP_06103441.1| integration host factor subunit alpha [Brucella melitensis bv. 1
str. Rev.1]
gi|265994720|ref|ZP_06107277.1| integration host factor subunit alpha [Brucella melitensis bv. 3
str. Ether]
gi|265997934|ref|ZP_06110491.1| integration host factor subunit alpha [Brucella ceti M490/95/1]
gi|294852138|ref|ZP_06792811.1| integration host factor [Brucella sp. NVSL 07-0026]
gi|306838205|ref|ZP_07471059.1| integration host factor, alpha subunit [Brucella sp. NF 2653]
gi|306843721|ref|ZP_07476321.1| integration host factor, alpha subunit [Brucella sp. BO1]
gi|54037412|sp|P64391|IHFA_BRUSU RecName: Full=Integration host factor subunit alpha;
Short=IHF-alpha
gi|54041367|sp|P64390|IHFA_BRUME RecName: Full=Integration host factor subunit alpha;
Short=IHF-alpha
gi|75505311|sp|Q57DX3|IHFA_BRUAB RecName: Full=Integration host factor subunit alpha;
Short=IHF-alpha
gi|123740908|sp|Q2YNB8|IHFA_BRUA2 RecName: Full=Integration host factor subunit alpha;
Short=IHF-alpha
gi|189044694|sp|A9MAF7|IHFA_BRUC2 RecName: Full=Integration host factor subunit alpha;
Short=IHF-alpha
gi|226707370|sp|B2S525|IHFA_BRUA1 RecName: Full=Integration host factor subunit alpha;
Short=IHF-alpha
gi|254803510|sp|C0RIB4|IHFA_BRUMB RecName: Full=Integration host factor subunit alpha;
Short=IHF-alpha
gi|23347586|gb|AAN29707.1| integration host factor, alpha subunit [Brucella suis 1330]
gi|62195861|gb|AAX74161.1| HimA, integration host factor, alpha subunit [Brucella abortus
bv. 1 str. 9-941]
gi|82615759|emb|CAJ10755.1| Histone-like bacterial DNA-binding protein:Integration host
factor, alpha subunit [Brucella melitensis biovar
Abortus 2308]
gi|161335555|gb|ABX61860.1| integration host factor, alpha subunit [Brucella canis ATCC
23365]
gi|189019550|gb|ACD72272.1| Integration host factor, alpha subunit [Brucella abortus S19]
gi|225640658|gb|ACO00572.1| integration host factor, alpha subunit [Brucella melitensis ATCC
23457]
gi|255999370|gb|ACU47769.1| integration host factor alpha subunit [Brucella microti CCM 4915]
gi|260096925|gb|EEW80800.1| integration host factor subunit alpha [Brucella abortus NCTC
8038]
gi|260153830|gb|EEW88922.1| integration host factor subunit alpha [Brucella melitensis bv. 1
str. 16M]
gi|260156171|gb|EEW91251.1| integration host factor subunit alpha [Brucella suis bv. 4 str.
40]
gi|260668072|gb|EEX55012.1| integration host factor subunit alpha [Brucella abortus bv. 4
str. 292]
gi|260672011|gb|EEX58832.1| integration host factor subunit alpha [Brucella abortus bv. 2
str. 86/8/59]
gi|260674641|gb|EEX61462.1| integration host factor subunit alpha [Brucella abortus bv. 6
str. 870]
gi|260873089|gb|EEX80158.1| integration host factor subunit alpha [Brucella abortus bv. 9
str. C68]
gi|260915388|gb|EEX82249.1| integration host factor subunit alpha [Brucella abortus bv. 3
str. Tulya]
gi|260920555|gb|EEX87208.1| integration host factor subunit alpha [Brucella ceti B1/94]
gi|260923950|gb|EEX90518.1| integration host factor subunit alpha [Brucella ceti M13/05/1]
gi|261294330|gb|EEX97826.1| integration host factor subunit alpha [Brucella ceti M644/93/1]
gi|261296656|gb|EEY00153.1| integration host factor subunit alpha [Brucella pinnipedialis
B2/94]
gi|261303493|gb|EEY06990.1| integration host factor subunit alpha [Brucella pinnipedialis
M163/99/10]
gi|261737971|gb|EEY25967.1| integration host factor subunit alpha [Brucella sp. F5/99]
gi|261741853|gb|EEY29779.1| integration host factor subunit alpha [Brucella suis bv. 5 str.
513]
gi|261744512|gb|EEY32438.1| integration host factor subunit alpha [Brucella suis bv. 3 str.
686]
gi|262552402|gb|EEZ08392.1| integration host factor subunit alpha [Brucella ceti M490/95/1]
gi|262765833|gb|EEZ11622.1| integration host factor subunit alpha [Brucella melitensis bv. 3
str. Ether]
gi|263001668|gb|EEZ14243.1| integration host factor subunit alpha [Brucella melitensis bv. 1
str. Rev.1]
gi|263094446|gb|EEZ18268.1| integration host factor subunit alpha [Brucella melitensis bv. 2
str. 63/9]
gi|264660667|gb|EEZ30928.1| integration host factor subunit alpha [Brucella pinnipedialis
M292/94/1]
gi|264662472|gb|EEZ32733.1| integration host factor subunit alpha [Brucella sp. 83/13]
gi|294820727|gb|EFG37726.1| integration host factor [Brucella sp. NVSL 07-0026]
gi|306276031|gb|EFM57740.1| integration host factor, alpha subunit [Brucella sp. BO1]
gi|306406714|gb|EFM62939.1| integration host factor, alpha subunit [Brucella sp. NF 2653]
Length = 107
Score = 81.4 bits (200), Expect = 4e-14, Method: Composition-based stats.
Identities = 24/89 (26%), Positives = 47/89 (52%), Gaps = 1/89 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
++ L + +K L+ + +V M+L+E+ A+ NG V++ F +F VR + R+
Sbjct: 7 TRADLAEAVYRK-VGLSRTESAALVEMILDEVCDAIVNGETVKLSSFATFQVRDKNERIG 65
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P + + + + V F+A LK+R+
Sbjct: 66 RNPKTGEEVPILPRRVMTFKASNVLKQRI 94
>gi|187729724|ref|YP_001837313.1| integration host factor subunit A-like protein [Acidithiobacillus
caldus]
gi|167782109|gb|ACA00180.1| integration host factor subunit A-like protein [Acidithiobacillus
caldus]
Length = 112
Score = 81.4 bits (200), Expect = 4e-14, Method: Composition-based stats.
Identities = 24/90 (26%), Positives = 42/90 (46%), Gaps = 1/90 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
+ L +A + IV+ +++ Q LA G V++ GFG+F +R + AR
Sbjct: 4 TRKDLAYYLAD-TLGFTVTEARTIVDRFFDQIRQTLAQGEEVKLSGFGNFVLRDKRARPG 62
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + + + + V F A ++LK N
Sbjct: 63 RNPKTKVPVEITARRVVTFHASQSLKGHCN 92
>gi|116326536|ref|YP_796459.1| nucleoid DNA-binding protein [Lactococcus lactis subsp. cremoris
SK11]
gi|134093293|ref|YP_001098369.1| hypothetical protein pDB0R0p15 [Lactococcus lactis subsp. lactis
bv. diacetylactis]
gi|116108903|gb|ABJ74028.1| nucleoid DNA-binding protein [Lactococcus lactis subsp. cremoris
SK11]
gi|133712501|gb|ABO37108.1| unknown [Lactococcus lactis subsp. lactis bv. diacetylactis]
Length = 103
Score = 81.4 bits (200), Expect = 4e-14, Method: Composition-based stats.
Identities = 28/95 (29%), Positives = 51/95 (53%), Gaps = 6/95 (6%)
Query: 2 IKSSLIGTIAKKNPKLNYQ------DVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRK 55
K L I++K+ + + + +K+V+ + +T+ L G++++ FG+F +
Sbjct: 3 NKKELAKAISEKSGNIMKKHPLTIYESKKVVDAITASITELLVQDGKIQMIDFGTFEKKT 62
Query: 56 RAARLARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
RA+R P + I + EK VP F+AGK LKE +
Sbjct: 63 RASRGGFNPQVGERIQIPEKTVPTFKAGKGLKEAV 97
>gi|269977423|ref|ZP_06184395.1| DNA-binding protein HB1 [Mobiluncus mulieris 28-1]
gi|307700288|ref|ZP_07637328.1| DNA-binding protein HB1 [Mobiluncus mulieris FB024-16]
gi|269934339|gb|EEZ90901.1| DNA-binding protein HB1 [Mobiluncus mulieris 28-1]
gi|307614499|gb|EFN93728.1| DNA-binding protein HB1 [Mobiluncus mulieris FB024-16]
Length = 91
Score = 81.4 bits (200), Expect = 4e-14, Method: Composition-based stats.
Identities = 21/90 (23%), Positives = 41/90 (45%), Gaps = 1/90 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M ++ L+ IAK+ L+ + + ++ + + ++L G V++ G + RAAR
Sbjct: 1 MNRTELVAEIAKRAA-LSKTEADAALSAFQDILIESLKKGETVKVTGLMNVERVSRAART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P + I + AG LK+ +
Sbjct: 60 GRNPRTGEEIKIPAGFGVKISAGSTLKKAV 89
>gi|163735834|ref|ZP_02143263.1| integration host factor, alpha subunit [Roseobacter litoralis Och
149]
gi|161390920|gb|EDQ15260.1| integration host factor, alpha subunit [Roseobacter litoralis Och
149]
Length = 100
Score = 81.4 bits (200), Expect = 4e-14, Method: Composition-based stats.
Identities = 25/89 (28%), Positives = 50/89 (56%), Gaps = 1/89 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
+ L + ++ L+ + ++V +LE ++ AL +G +V+I FG+FSVR ++AR+
Sbjct: 7 TRMDLSEAVFRE-VGLSRNESAQLVESVLEHLSDALVSGEQVKISSFGTFSVRDKSARVG 65
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P + + + + V FR +K+R+
Sbjct: 66 RNPKTGEEVPINPRRVLTFRPSHLMKDRV 94
>gi|319784144|ref|YP_004143620.1| integration host factor subunit alpha [Mesorhizobium ciceri
biovar biserrulae WSM1271]
gi|317170032|gb|ADV13570.1| integration host factor, alpha subunit [Mesorhizobium ciceri
biovar biserrulae WSM1271]
Length = 107
Score = 81.4 bits (200), Expect = 4e-14, Method: Composition-based stats.
Identities = 21/89 (23%), Positives = 46/89 (51%), Gaps = 1/89 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
++ L + +K L+ + ++V +L+E+ +A+ G V++ F +F VR + R+
Sbjct: 7 TRADLAEAVYRK-VGLSRTESAELVEAVLDEICEAIVRGETVKLSSFATFHVRSKNERIG 65
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P + + + + V F++ LK R+
Sbjct: 66 RNPKTGEEVPILPRRVMTFKSSNVLKSRI 94
>gi|85374549|ref|YP_458611.1| integration host factor subunit alpha [Erythrobacter litoralis
HTCC2594]
gi|123099506|sp|Q2N927|IHFA_ERYLH RecName: Full=Integration host factor subunit alpha;
Short=IHF-alpha
gi|84787632|gb|ABC63814.1| integration host factor alpha-subunit [Erythrobacter litoralis
HTCC2594]
Length = 100
Score = 81.0 bits (199), Expect = 5e-14, Method: Composition-based stats.
Identities = 28/89 (31%), Positives = 45/89 (50%), Gaps = 1/89 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
++ L I +K + + +V +LE M AL G V+I GFGSF +R + R+
Sbjct: 9 TRADLAEAINRKM-GFSRAESLDMVEAILEHMCGALRKGENVKISGFGSFVLRDKKERIG 67
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P + + + V FRA + L+ER+
Sbjct: 68 RNPKTGVEVPITPRRVMTFRASQLLRERI 96
>gi|152979083|ref|YP_001344712.1| integration host factor, alpha subunit [Actinobacillus
succinogenes 130Z]
gi|171704314|sp|A6VP80|IHFA_ACTSZ RecName: Full=Integration host factor subunit alpha;
Short=IHF-alpha
gi|150840806|gb|ABR74777.1| integration host factor, alpha subunit [Actinobacillus
succinogenes 130Z]
Length = 98
Score = 81.0 bits (199), Expect = 5e-14, Method: Composition-based stats.
Identities = 28/95 (29%), Positives = 48/95 (50%), Gaps = 1/95 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K + + +K +LN + + +V EE+ LA+G V++ GFG+F +R +A+R
Sbjct: 4 TKVEIAENLTRKL-ELNKTEAKAMVESFFEEIRATLADGHNVKLSGFGNFELRDKASRPG 62
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDST 96
R P + I V + V FR G+ L+ R+
Sbjct: 63 RNPKTGENIPVSARRVVVFRPGQKLRARVEKSKPK 97
>gi|400045|sp|P30787|IHFA_RHOCA RecName: Full=Integration host factor subunit alpha;
Short=IHF-alpha
gi|151944|gb|AAA26128.1| integration host factor [Rhodobacter capsulatus]
Length = 100
Score = 81.0 bits (199), Expect = 5e-14, Method: Composition-based stats.
Identities = 24/95 (25%), Positives = 49/95 (51%), Gaps = 1/95 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
+ L + ++ L+ + ++V +L+ M+ AL G V+I FG+FSVR + +R+
Sbjct: 7 TRMDLSEAVFRE-VGLSRNESAQLVETVLQHMSDALVRGETVKISSFGTFSVRDKTSRMG 65
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDST 96
R P + + + + V FR +K+R+ ++
Sbjct: 66 RNPKTGEEVPISPRRVLSFRPSHLMKDRVAERNAK 100
>gi|298245978|ref|ZP_06969784.1| histone family protein DNA-binding protein [Ktedonobacter racemifer
DSM 44963]
gi|297553459|gb|EFH87324.1| histone family protein DNA-binding protein [Ktedonobacter racemifer
DSM 44963]
Length = 142
Score = 81.0 bits (199), Expect = 5e-14, Method: Composition-based stats.
Identities = 31/91 (34%), Positives = 42/91 (46%), Gaps = 1/91 (1%)
Query: 3 KSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLAR 62
+ L IA K KL+ + +++ L+ + +AL NG V + GFGSF VR A R
Sbjct: 53 RQELSRRIA-KQAKLSQKQASEVLEATLDSIREALQNGDEVRLVGFGSFKVRTSAERKGV 111
Query: 63 APLAQKVISVEEKMVPFFRAGKNLKERLNSP 93
P K I V K F GK L E +
Sbjct: 112 NPRDGKEIVVPAKERVRFSPGKELSEAVEKK 142
>gi|51244670|ref|YP_064554.1| DNA-binding protein HU-beta [Desulfotalea psychrophila LSv54]
gi|50875707|emb|CAG35547.1| probable DNA-binding protein HU-beta [Desulfotalea psychrophila
LSv54]
Length = 121
Score = 81.0 bits (199), Expect = 5e-14, Method: Composition-based stats.
Identities = 35/96 (36%), Positives = 59/96 (61%), Gaps = 1/96 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI ++ ++ + +++ I N +++ MT+ALA G +EIRGFGSF V++ +
Sbjct: 27 MNKSELIEALS-QDVNIPHREAAAITNTVIDTMTEALAKGDSIEIRGFGSFVVKQYESYE 85
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDST 96
R P K I V+ K +PFF+ GK+L+E+++
Sbjct: 86 GRNPKTGKKIKVKPKKLPFFKVGKDLREQVDLKRKK 121
>gi|260175099|ref|ZP_05761511.1| putative histone-like DNA-binding protein [Bacteroides sp. D2]
gi|315923329|ref|ZP_07919569.1| HU family DNA-binding protein [Bacteroides sp. D2]
gi|313697204|gb|EFS34039.1| HU family DNA-binding protein [Bacteroides sp. D2]
Length = 88
Score = 81.0 bits (199), Expect = 5e-14, Method: Composition-based stats.
Identities = 22/87 (25%), Positives = 46/87 (52%), Gaps = 1/87 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI +A K KL++++ ++++++ +T+ + G + + GFGSF +++R R
Sbjct: 1 MNKTELIKEVALK-GKLSFREAGYALDVIIDTITETMQKGENITLVGFGSFVIQERKERN 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLK 87
P + + K FR G ++
Sbjct: 60 GHNPSTGGSMVIPAKRQVKFRPGSKMR 86
>gi|308272922|emb|CBX29526.1| DNA-binding protein HU-beta [uncultured Desulfobacterium sp.]
Length = 110
Score = 81.0 bits (199), Expect = 5e-14, Method: Composition-based stats.
Identities = 32/91 (35%), Positives = 49/91 (53%), Gaps = 2/91 (2%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALA-NGGRVEIRGFGSFSVRKRAAR 59
M K+ L+ IA + K+ ++ + +T+AL G+V + GFG+FS KRAAR
Sbjct: 21 MTKAELVDAIAA-DAKITKTAAVAALDSFTKNVTKALKSKDGKVTLVGFGTFSKAKRAAR 79
Query: 60 LARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P I ++ + V F+AGK LKE +
Sbjct: 80 KGRNPQTGAEIKIKARNVVKFKAGKKLKESV 110
>gi|310815851|ref|YP_003963815.1| Histone-like DNA-binding protein (IHF) [Ketogulonicigenium
vulgare Y25]
gi|308754586|gb|ADO42515.1| Histone-like DNA-binding protein (IHF) [Ketogulonicigenium
vulgare Y25]
Length = 99
Score = 81.0 bits (199), Expect = 5e-14, Method: Composition-based stats.
Identities = 27/89 (30%), Positives = 47/89 (52%), Gaps = 1/89 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
+ L + K L+ D +V +L+ ++ AL G V+I FG+FSVR+++AR+
Sbjct: 7 TRMDLAEAVHNK-VGLSRNDSATLVETVLQHISDALVAGESVKISSFGTFSVREKSARVG 65
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P + + + V FR+ +KER+
Sbjct: 66 RNPKTGIEVPINPRRVLTFRSSHLMKERV 94
>gi|182680278|ref|YP_001834424.1| integration host factor, alpha subunit [Beijerinckia indica subsp.
indica ATCC 9039]
gi|182636161|gb|ACB96935.1| integration host factor, alpha subunit [Beijerinckia indica subsp.
indica ATCC 9039]
Length = 125
Score = 81.0 bits (199), Expect = 5e-14, Method: Composition-based stats.
Identities = 23/90 (25%), Positives = 47/90 (52%), Gaps = 1/90 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
+ +L + ++ L+ ++ +V M+L E++ L G V++ FGSF +R +A R+
Sbjct: 28 TRVNLAEAVY-RSVGLSRKESAALVQMVLSELSDTLVKGETVKLSSFGSFIIRSKAERIG 86
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + + ++ V F+ LK ++N
Sbjct: 87 RNPKTGIEVPITQRRVLVFKPSNVLKAKVN 116
>gi|94968214|ref|YP_590262.1| histone-like DNA-binding protein [Candidatus Koribacter versatilis
Ellin345]
gi|94550264|gb|ABF40188.1| histone-like DNA-binding protein [Candidatus Koribacter versatilis
Ellin345]
Length = 107
Score = 81.0 bits (199), Expect = 5e-14, Method: Composition-based stats.
Identities = 26/84 (30%), Positives = 40/84 (47%), Gaps = 1/84 (1%)
Query: 3 KSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLAR 62
K +I + K + E V + E M +AL+ G R+E+RGFG F+VR R + R
Sbjct: 21 KLDIINEVVNKT-GVTKTKAELAVETVFESMKKALSRGDRIELRGFGVFNVRPRKTGIGR 79
Query: 63 APLAQKVISVEEKMVPFFRAGKNL 86
P +++ F+ GK L
Sbjct: 80 NPRTGAEVNIPPGKAVRFKPGKEL 103
>gi|253584243|ref|ZP_04861441.1| DNA-binding protein HU [Fusobacterium varium ATCC 27725]
gi|251834815|gb|EES63378.1| DNA-binding protein HU [Fusobacterium varium ATCC 27725]
Length = 90
Score = 81.0 bits (199), Expect = 5e-14, Method: Composition-based stats.
Identities = 26/91 (28%), Positives = 44/91 (48%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K + + KN ++ E+ VN+ L + L G + G+G + V++RAAR
Sbjct: 1 MTKKEFVE-LYAKNGGFTKKEAERAVNLFLASVEDTLVKGDNITFVGWGKWEVKERAARE 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P K + +E K F+ GK L +++
Sbjct: 60 VRNPQTNKKMRIEAKKAVKFKVGKTLADKIK 90
>gi|260575262|ref|ZP_05843262.1| integration host factor, alpha subunit [Rhodobacter sp. SW2]
gi|259022522|gb|EEW25818.1| integration host factor, alpha subunit [Rhodobacter sp. SW2]
Length = 100
Score = 81.0 bits (199), Expect = 5e-14, Method: Composition-based stats.
Identities = 26/89 (29%), Positives = 47/89 (52%), Gaps = 1/89 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
+ L + ++ L+ D ++V +L+ M+ AL G V+I FG+FSVR ++AR+
Sbjct: 7 TRMDLSEAVFRE-VGLSRNDSAQLVEAVLQHMSDALVGGETVKISSFGTFSVRDKSARVG 65
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P + + + V FR +K+R+
Sbjct: 66 RNPKTGDEVPISPRRVMTFRPSHLMKDRV 94
>gi|39997218|ref|NP_953169.1| integration host factor subunit alpha [Geobacter sulfurreducens
PCA]
gi|39984108|gb|AAR35496.1| integration host factor, alpha subunit [Geobacter sulfurreducens
PCA]
Length = 91
Score = 81.0 bits (199), Expect = 5e-14, Method: Composition-based stats.
Identities = 22/92 (23%), Positives = 47/92 (51%), Gaps = 1/92 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ ++ ++ + ++ +D ++V ++ + L G ++I GFG F ++ + AR
Sbjct: 1 MTKADIVERVSDR-CGISKKDSIEMVELVFSILKNTLEIGEDIKISGFGKFEIKNKHARK 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P I++E + + F+ LK +NS
Sbjct: 60 GRNPQTGDAITIEARRILTFKPSTILKNNINS 91
>gi|323358137|ref|YP_004224533.1| bacterial nucleoid DNA-binding protein [Microbacterium testaceum
StLB037]
gi|323274508|dbj|BAJ74653.1| bacterial nucleoid DNA-binding protein [Microbacterium testaceum
StLB037]
Length = 95
Score = 81.0 bits (199), Expect = 6e-14, Method: Composition-based stats.
Identities = 23/91 (25%), Positives = 43/91 (47%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
+ K+ L+ +IA + + V +++ L +++A+A G +V I G+ +F +AR
Sbjct: 6 ITKTELVASIASATGQ-SQSAVSGVLDSLFSTVSEAVAKGSKVSIPGWIAFEQVATSART 64
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + IS+ AG LK +
Sbjct: 65 GRNPQTGEEISIPAGKRVKVTAGSKLKAAVK 95
>gi|327189794|gb|EGE56935.1| integration host factor protein, alpha subunit [Rhizobium etli
CNPAF512]
Length = 117
Score = 81.0 bits (199), Expect = 6e-14, Method: Composition-based stats.
Identities = 21/89 (23%), Positives = 46/89 (51%), Gaps = 1/89 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
++ L ++ +K L+ + ++V +++E+ A+ G V++ F +F VR + R+
Sbjct: 12 TRADLAESVFRK-VGLSRTESAELVETVIDEICNAIVRGETVKLSSFATFQVRDKNERIG 70
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P + + + + V F+A LK R+
Sbjct: 71 RNPKTGEEVPISPRRVMTFKASNVLKTRI 99
>gi|256826372|ref|YP_003150332.1| nucleoid DNA-binding protein [Kytococcus sedentarius DSM 20547]
gi|256689765|gb|ACV07567.1| bacterial nucleoid DNA-binding protein [Kytococcus sedentarius
DSM 20547]
Length = 91
Score = 81.0 bits (199), Expect = 6e-14, Method: Composition-based stats.
Identities = 17/89 (19%), Positives = 40/89 (44%), Gaps = 1/89 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M ++ L IA++ ++ +D +++ + + + + + G +V + G + +R+AR
Sbjct: 1 MNRTELASAIAQQ-ADVSAKDAAAVLSAMGDVICETVGKGEKVSLPGLMTIERVERSART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKER 89
R P + + + AG LK
Sbjct: 60 GRNPRTGESMEIPASFGAKLSAGSALKAA 88
>gi|262203103|ref|YP_003274311.1| histone family protein DNA-binding protein [Gordonia bronchialis
DSM 43247]
gi|262086450|gb|ACY22418.1| histone family protein DNA-binding protein [Gordonia bronchialis
DSM 43247]
Length = 193
Score = 81.0 bits (199), Expect = 6e-14, Method: Composition-based stats.
Identities = 30/100 (30%), Positives = 50/100 (50%), Gaps = 2/100 (2%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI + KK + + + V ++++ + +A+ G V I GFG F R+RA R+
Sbjct: 1 MNKAELIDELTKKL-DADRKTATEAVELIVDTIVRAVNKGESVTITGFGVFEKRRRAPRV 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDSTLSNS 100
AR P + + V VP FR G K + + L+ +
Sbjct: 60 ARNPRTGETVKVRATSVPAFRPGAQFKAVV-AGKQKLAAT 98
>gi|213021940|ref|ZP_03336387.1| transcriptional regulator HU subunit alpha [Salmonella enterica
subsp. enterica serovar Typhi str. 404ty]
Length = 85
Score = 81.0 bits (199), Expect = 6e-14, Method: Composition-based stats.
Identities = 29/85 (34%), Positives = 43/85 (50%), Gaps = 1/85 (1%)
Query: 7 IGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLARAPLA 66
I IA K +L+ + + L +T++L G V++ GFG+F V RA R R P
Sbjct: 2 IDVIADK-AELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTGRNPQT 60
Query: 67 QKVISVEEKMVPFFRAGKNLKERLN 91
K I + VP F +GK LK+ +
Sbjct: 61 GKEIKIAAANVPAFVSGKALKDAVK 85
>gi|302865832|ref|YP_003834469.1| histone family protein DNA-binding protein [Micromonospora
aurantiaca ATCC 27029]
gi|315502377|ref|YP_004081264.1| histone family protein DNA-binding protein [Micromonospora sp.
L5]
gi|302568691|gb|ADL44893.1| histone family protein DNA-binding protein [Micromonospora
aurantiaca ATCC 27029]
gi|315408996|gb|ADU07113.1| histone family protein DNA-binding protein [Micromonospora sp.
L5]
Length = 203
Score = 80.6 bits (198), Expect = 6e-14, Method: Composition-based stats.
Identities = 31/90 (34%), Positives = 47/90 (52%), Gaps = 2/90 (2%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI +A + + ++ +L E+ A+ G +V I GFG+F R R AR
Sbjct: 1 MNKAELIEALAVRLGD--RKTATAALDAVLAEVQAAVTKGEKVAITGFGAFEKRVRGART 58
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
AR P + + V++ VP FRAG KE +
Sbjct: 59 ARNPRTGEAVKVKKTSVPTFRAGAGFKEMV 88
>gi|19704153|ref|NP_603715.1| DNA-binding protein HU [Fusobacterium nucleatum subsp. nucleatum
ATCC 25586]
gi|254303834|ref|ZP_04971192.1| DNA-binding protein HU [Fusobacterium nucleatum subsp.
polymorphum ATCC 10953]
gi|296328641|ref|ZP_06871158.1| DNA-binding protein HU [Fusobacterium nucleatum subsp. nucleatum
ATCC 23726]
gi|19714367|gb|AAL95014.1| DNA-binding protein HU [Fusobacterium nucleatum subsp. nucleatum
ATCC 25586]
gi|148324026|gb|EDK89276.1| DNA-binding protein HU [Fusobacterium nucleatum subsp.
polymorphum ATCC 10953]
gi|296154240|gb|EFG95041.1| DNA-binding protein HU [Fusobacterium nucleatum subsp. nucleatum
ATCC 23726]
Length = 91
Score = 80.6 bits (198), Expect = 6e-14, Method: Composition-based stats.
Identities = 23/91 (25%), Positives = 43/91 (47%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K + +K + EK V+++ + + + L +G + I +G + +RA RL
Sbjct: 1 MTKKEFAKLLFEKGVFTTRTEAEKKVDIIFDSIEKILLDGENLSIINWGKLEIVERAPRL 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + + + ++ FR GK E+LN
Sbjct: 61 GRNPKTGEEVKIGKRKSVKFRPGKAFLEKLN 91
>gi|163759219|ref|ZP_02166305.1| integration host factor alpha subunit [Hoeflea phototrophica
DFL-43]
gi|162283623|gb|EDQ33908.1| integration host factor alpha subunit [Hoeflea phototrophica
DFL-43]
Length = 107
Score = 80.6 bits (198), Expect = 6e-14, Method: Composition-based stats.
Identities = 23/90 (25%), Positives = 49/90 (54%), Gaps = 1/90 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
+ ++ L + +K L+ + ++V M+LEE++ ++ G V++ F +F VR++ R+
Sbjct: 6 ITRADLAEAVFRK-VGLSRTESAELVEMVLEEVSNSIVRGESVKLSSFATFQVREKKERI 64
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P + + + + V F+A LK R+
Sbjct: 65 GRNPKTGEEVPISPRRVMTFKASNVLKNRV 94
>gi|302537148|ref|ZP_07289490.1| predicted protein [Streptomyces sp. C]
gi|302446043|gb|EFL17859.1| predicted protein [Streptomyces sp. C]
Length = 248
Score = 80.6 bits (198), Expect = 6e-14, Method: Composition-based stats.
Identities = 32/89 (35%), Positives = 47/89 (52%), Gaps = 2/89 (2%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ L+ IA K Q V+ +L+ M +A+ G RV + GFGSF R AR A
Sbjct: 20 NKAQLVEAIADKLGG--RQQAADAVDAVLDAMVRAVVAGDRVSVTGFGSFEKVDRPARYA 77
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P + + V++ VP FRAG+ K+ +
Sbjct: 78 RNPQTGERVRVKKTSVPRFRAGQGFKDLV 106
>gi|206973313|ref|ZP_03234235.1| DNA-binding protein HU 1 [Bacillus cereus AH1134]
gi|206732197|gb|EDZ49397.1| DNA-binding protein HU 1 [Bacillus cereus AH1134]
Length = 93
Score = 80.6 bits (198), Expect = 6e-14, Method: Composition-based stats.
Identities = 33/91 (36%), Positives = 51/91 (56%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
+ K+ L +A+K +L +D +L+ +T ALANG +V+I F +F VR+R+AR
Sbjct: 4 INKTELTKVVAEKT-ELIQKDPVAATQTVLDTITNALANGEKVQILSFCTFEVRERSART 62
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P K + + P F+AGK LKE +
Sbjct: 63 GRNPQTGKKMQIAASKAPAFKAGKELKEAVK 93
>gi|77463165|ref|YP_352669.1| integration host factor subunit alpha [Rhodobacter sphaeroides
2.4.1]
gi|126462037|ref|YP_001043151.1| integration host factor subunit alpha [Rhodobacter sphaeroides
ATCC 17029]
gi|146277950|ref|YP_001168109.1| integration host factor subunit alpha [Rhodobacter sphaeroides
ATCC 17025]
gi|332558039|ref|ZP_08412361.1| integration host factor subunit alpha [Rhodobacter sphaeroides
WS8N]
gi|123592159|sp|Q3J366|IHFA_RHOS4 RecName: Full=Integration host factor subunit alpha;
Short=IHF-alpha
gi|166918520|sp|A3PJ63|IHFA_RHOS1 RecName: Full=Integration host factor subunit alpha;
Short=IHF-alpha
gi|166918521|sp|A4WTU0|IHFA_RHOS5 RecName: Full=Integration host factor subunit alpha;
Short=IHF-alpha
gi|77387583|gb|ABA78768.1| Histone-like DNA-binding protein (IHF) [Rhodobacter sphaeroides
2.4.1]
gi|126103701|gb|ABN76379.1| integration host factor, alpha subunit [Rhodobacter sphaeroides
ATCC 17029]
gi|145556191|gb|ABP70804.1| integration host factor, alpha subunit [Rhodobacter sphaeroides
ATCC 17025]
gi|332275751|gb|EGJ21066.1| integration host factor subunit alpha [Rhodobacter sphaeroides
WS8N]
Length = 100
Score = 80.6 bits (198), Expect = 6e-14, Method: Composition-based stats.
Identities = 25/89 (28%), Positives = 49/89 (55%), Gaps = 1/89 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
+ L + ++ L+ + ++V +L+ ++ ALA+G V+I FG+F+VR ++AR+
Sbjct: 7 TRMDLSEAVFRE-VGLSRNESAQLVESVLQHVSDALASGETVKISSFGTFTVRDKSARIG 65
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P + + + V FR +KER+
Sbjct: 66 RNPKTGDEVPISPRRVLTFRPSHLMKERV 94
>gi|153009845|ref|YP_001371060.1| integration host factor subunit alpha [Ochrobactrum anthropi ATCC
49188]
gi|166918512|sp|A6X1X7|IHFA_OCHA4 RecName: Full=Integration host factor subunit alpha;
Short=IHF-alpha
gi|151561733|gb|ABS15231.1| integration host factor, alpha subunit [Ochrobactrum anthropi
ATCC 49188]
Length = 107
Score = 80.6 bits (198), Expect = 6e-14, Method: Composition-based stats.
Identities = 24/89 (26%), Positives = 47/89 (52%), Gaps = 1/89 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
++ L + +K L+ + +V M+L+E+ A+ NG V++ F +F VR + R+
Sbjct: 7 TRADLAEAVYRK-VGLSRTESAALVEMILDEVCDAIVNGETVKLSSFATFQVRDKNERIG 65
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P + + + + V F+A LK+R+
Sbjct: 66 RNPKTGEEVPILPRRVMTFKASNVLKQRI 94
>gi|310817243|ref|YP_003965207.1| DNA-binding protein HU, form N [Ketogulonicigenium vulgare Y25]
gi|308755978|gb|ADO43907.1| DNA-binding protein HU, form N [Ketogulonicigenium vulgare Y25]
Length = 95
Score = 80.6 bits (198), Expect = 6e-14, Method: Composition-based stats.
Identities = 23/92 (25%), Positives = 40/92 (43%), Gaps = 1/92 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ L+ +A+ + + + L + +T +A GG V + G G F R+R AR+
Sbjct: 5 MTKTQLVAALAEAT-GTDKKAAGAAIEALGKIITDEVAAGGAVTLPGVGKFYCRERPARV 63
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P + K LK+ +N+
Sbjct: 64 VRNPRTNESHEKPADKAVKVTVAKALKDSVNA 95
>gi|315926169|ref|ZP_07922369.1| DNA-binding protein HU-beta [Pseudoramibacter alactolyticus ATCC
23263]
gi|315620613|gb|EFV00594.1| DNA-binding protein HU-beta [Pseudoramibacter alactolyticus ATCC
23263]
Length = 96
Score = 80.6 bits (198), Expect = 7e-14, Method: Composition-based stats.
Identities = 26/90 (28%), Positives = 42/90 (46%), Gaps = 1/90 (1%)
Query: 3 KSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLAR 62
KS + +A KN L+ +D K ++ L++ + + + G +V + FG+F R R
Sbjct: 8 KSEFVSAMA-KNAGLSKKDTRKELDALIKIIMETVKEGEKVLLMNFGTFDCYYRQGRPGS 66
Query: 63 APLAQKVISVEEKMVPFFRAGKNLKERLNS 92
P + I V P FRAG+ K L
Sbjct: 67 NPRTGEPIDVAACYSPRFRAGRAFKRALKE 96
>gi|114704822|ref|ZP_01437730.1| integration host factor alpha subunit [Fulvimarina pelagi
HTCC2506]
gi|114539607|gb|EAU42727.1| integration host factor alpha subunit [Fulvimarina pelagi
HTCC2506]
Length = 119
Score = 80.6 bits (198), Expect = 7e-14, Method: Composition-based stats.
Identities = 26/89 (29%), Positives = 48/89 (53%), Gaps = 1/89 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
++ L + +K L+ + +V M+LEE+ + +++G V+I FGSF VR + R+
Sbjct: 7 TRADLSEAVFRKI-GLSRTESATLVEMVLEEVCETISSGEAVKISSFGSFLVRDKNERVG 65
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P + + + + V F+ LKER+
Sbjct: 66 RNPKTGEEVPISPRKVTVFKPSNVLKERI 94
>gi|296444587|ref|ZP_06886551.1| histone family protein DNA-binding protein [Methylosinus
trichosporium OB3b]
gi|296257855|gb|EFH04918.1| histone family protein DNA-binding protein [Methylosinus
trichosporium OB3b]
Length = 141
Score = 80.6 bits (198), Expect = 7e-14, Method: Composition-based stats.
Identities = 25/90 (27%), Positives = 46/90 (51%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
+++L + P L+ + +I++ EE++ AL G V++R FGSF+VR + R+
Sbjct: 41 TRAALREAVYSCCPTLSRAEARQILDATFEEISDALVRGEPVKLRSFGSFNVRAKRERVG 100
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + + V F+A L ++N
Sbjct: 101 RNPKTGVEAPICSRKVLTFKASPVLIAQVN 130
>gi|5420132|emb|CAB46606.1| HimA protein [Yersinia pseudotuberculosis]
Length = 98
Score = 80.6 bits (198), Expect = 7e-14, Method: Composition-based stats.
Identities = 28/95 (29%), Positives = 51/95 (53%), Gaps = 1/95 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ + + +K L+ + ++ +V + EE+ +AL NG +V++ GFG+F +R + R
Sbjct: 4 TKAEMSEHLFEKL-GLSNEMLKILVELFFEEVRRALENGEQVKLSGFGNFDLRDKNQRPG 62
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDST 96
R P + I + + V FR G+ LK R+ S
Sbjct: 63 RNPKTGEDIPITARRVVTFRPGQKLKSRVESATPK 97
>gi|313159521|gb|EFR58884.1| DNA-binding protein HU-beta [Alistipes sp. HGB5]
Length = 86
Score = 80.6 bits (198), Expect = 7e-14, Method: Composition-based stats.
Identities = 25/86 (29%), Positives = 44/86 (51%), Gaps = 1/86 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ L+ IA + ++ D K V+ ++ Q+L G R+ + G G+FSV+++AAR+
Sbjct: 1 MNKAQLVEAIAL-DANISKIDARKAVDAIIRVTVQSLREGERLTLTGLGTFSVQQKAARV 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNL 86
R P + + + FR L
Sbjct: 60 GRNPRTSAAVKIPPRKAVKFRPTIEL 85
>gi|126727233|ref|ZP_01743069.1| histone-like DNA-binding protein [Rhodobacterales bacterium
HTCC2150]
gi|126703442|gb|EBA02539.1| histone-like DNA-binding protein [Rhodobacterales bacterium
HTCC2150]
Length = 94
Score = 80.6 bits (198), Expect = 7e-14, Method: Composition-based stats.
Identities = 24/91 (26%), Positives = 42/91 (46%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ L+ A + L+ + + L+ +T+ ++ GG V + G G F R+R R+
Sbjct: 5 MTKTQLVAAYADAS-GLDKKTAGAALEALVGLITKEVSGGGAVTLPGLGKFYCRERPERM 63
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + I + V K LK+ +N
Sbjct: 64 VRNPATGEQIKKDADRVVKVTIAKALKDSVN 94
>gi|167646806|ref|YP_001684469.1| histone family protein DNA-binding protein [Caulobacter sp. K31]
gi|167349236|gb|ABZ71971.1| histone family protein DNA-binding protein [Caulobacter sp. K31]
Length = 92
Score = 80.6 bits (198), Expect = 7e-14, Method: Composition-based stats.
Identities = 26/90 (28%), Positives = 43/90 (47%), Gaps = 1/90 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ L+ IA+K +N + + ++ +T +L G V + GFG+F RAA A
Sbjct: 3 TKAELVTAIAEK-AGINKNQAKDALEAFIDAVTTSLKAGEDVRLVGFGTFKAVARAAGTA 61
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + ++ F+ G+ LK LN
Sbjct: 62 RNPRTGETVNRPASKTARFQVGEGLKTTLN 91
>gi|302522114|ref|ZP_07274456.1| DNA-binding protein HU 2 [Streptomyces sp. SPB78]
gi|318056528|ref|ZP_07975251.1| putative histone-like DNA-binding protein [Streptomyces sp.
SA3_actG]
gi|318076088|ref|ZP_07983420.1| putative histone-like DNA-binding protein [Streptomyces sp.
SA3_actF]
gi|302431009|gb|EFL02825.1| DNA-binding protein HU 2 [Streptomyces sp. SPB78]
Length = 209
Score = 80.6 bits (198), Expect = 7e-14, Method: Composition-based stats.
Identities = 32/90 (35%), Positives = 49/90 (54%), Gaps = 2/90 (2%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ L+ IA K Q+ V+++L+ + +A G RV + GFGSF R AR
Sbjct: 1 MNKAQLVEAIADKLGG--RQNAADAVDVVLDAIVRATVAGDRVSVTGFGSFEKVDRPARY 58
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
AR P + + V++ VP FRAG+ K+ +
Sbjct: 59 ARNPQTGERVRVKKTSVPRFRAGQGFKDLV 88
>gi|295836329|ref|ZP_06823262.1| DNA binding protein HU [Streptomyces sp. SPB74]
gi|197699336|gb|EDY46269.1| DNA binding protein HU [Streptomyces sp. SPB74]
Length = 209
Score = 80.6 bits (198), Expect = 7e-14, Method: Composition-based stats.
Identities = 32/90 (35%), Positives = 49/90 (54%), Gaps = 2/90 (2%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ L+ IA K Q+ V+++L+ + +A G RV + GFGSF R AR
Sbjct: 1 MNKAQLVEAIADKLGG--RQNAADAVDVVLDAIVRATVAGDRVSVTGFGSFEKVDRPARY 58
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
AR P + + V++ VP FRAG+ K+ +
Sbjct: 59 ARNPQTGERVRVKKTSVPRFRAGQGFKDLV 88
>gi|189425274|ref|YP_001952451.1| histone family protein DNA-binding protein [Geobacter lovleyi SZ]
gi|189421533|gb|ACD95931.1| histone family protein DNA-binding protein [Geobacter lovleyi SZ]
Length = 95
Score = 80.6 bits (198), Expect = 7e-14, Method: Composition-based stats.
Identities = 31/88 (35%), Positives = 43/88 (48%), Gaps = 1/88 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS L+ +A+ L EK + + +T AL G +V + GFG+FS R AR
Sbjct: 1 MKKSELVAKMAE-GAGLTKAQAEKALASFIAGVTGALTAGDKVTLVGFGTFSAITRKART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKE 88
R P K I + K F GK+LK+
Sbjct: 60 GRNPQTGKAIKIAAKTSGKFSPGKSLKD 87
>gi|324998717|ref|ZP_08119829.1| hypothetical protein PseP1_08129 [Pseudonocardia sp. P1]
Length = 98
Score = 80.6 bits (198), Expect = 7e-14, Method: Composition-based stats.
Identities = 28/90 (31%), Positives = 46/90 (51%), Gaps = 2/90 (2%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ L+ + + + + V+ +++ + + GG V + GFG F R+RA R
Sbjct: 1 MNKAQLVDALTTRLGD--RRAAAEAVDAMVDVIVDTVGAGGTVTLTGFGVFEPRRRAPRT 58
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
AR P + + V E +VP FR G KER+
Sbjct: 59 ARNPRTGETVPVAETVVPSFRPGAAFKERV 88
>gi|221639022|ref|YP_002525284.1| integration host factor subunit alpha [Rhodobacter sphaeroides
KD131]
gi|221159803|gb|ACM00783.1| Integration host factor subunit alpha [Rhodobacter sphaeroides
KD131]
Length = 101
Score = 80.6 bits (198), Expect = 7e-14, Method: Composition-based stats.
Identities = 25/89 (28%), Positives = 49/89 (55%), Gaps = 1/89 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
+ L + ++ L+ + ++V +L+ ++ ALA+G V+I FG+F+VR ++AR+
Sbjct: 8 TRMDLSEAVFRE-VGLSRNESAQLVESVLQHVSDALASGETVKISSFGTFTVRDKSARIG 66
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P + + + V FR +KER+
Sbjct: 67 RNPKTGDEVPISPRRVLTFRPSHLMKERV 95
>gi|148240879|ref|YP_001220380.1| histone-like DNA-binding protein [Bradyrhizobium sp. BTAi1]
gi|146411255|gb|ABQ39708.1| Histone-like DNA-binding protein [Bradyrhizobium sp. BTAi1]
Length = 130
Score = 80.6 bits (198), Expect = 7e-14, Method: Composition-based stats.
Identities = 24/92 (26%), Positives = 39/92 (42%), Gaps = 2/92 (2%)
Query: 1 MIKS-SLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAAR 59
M + + IA +N L + IV+ + + + A +G + GFG F V+ AR
Sbjct: 30 MTTANEIAEKIAAEN-DLTKAQAKTIVDSVFKAIADAAVSGAETSLPGFGKFKVKDSPAR 88
Query: 60 LARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P I++ F K +K+ LN
Sbjct: 89 EGRNPSTGATIAIAASRKLTFTPAKAIKDSLN 120
>gi|256060895|ref|ZP_05451053.1| integration host factor subunit alpha [Brucella neotomae 5K33]
gi|261324891|ref|ZP_05964088.1| integration host factor subunit alpha [Brucella neotomae 5K33]
gi|261300871|gb|EEY04368.1| integration host factor subunit alpha [Brucella neotomae 5K33]
Length = 107
Score = 80.6 bits (198), Expect = 7e-14, Method: Composition-based stats.
Identities = 23/89 (25%), Positives = 47/89 (52%), Gaps = 1/89 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
++ L + +K L+ + ++ M+L+E+ A+ NG V++ F +F VR + R+
Sbjct: 7 TRADLAEAVYRK-VGLSRTESAALIEMILDEVCDAIVNGETVKLSSFATFQVRDKNERIG 65
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P + + + + V F+A LK+R+
Sbjct: 66 RNPKTGEEVPILPRRVMTFKASNVLKQRI 94
>gi|149186061|ref|ZP_01864375.1| integration host factor alpha-subunit [Erythrobacter sp. SD-21]
gi|148830092|gb|EDL48529.1| integration host factor alpha-subunit [Erythrobacter sp. SD-21]
Length = 102
Score = 80.6 bits (198), Expect = 7e-14, Method: Composition-based stats.
Identities = 31/89 (34%), Positives = 49/89 (55%), Gaps = 1/89 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
++ L TI +K L+ + +V +L +M+ ALA G V+I GFGSF +R + R+
Sbjct: 11 TRADLAETINRKM-GLSRAESLDLVEEILGKMSDALARGENVKISGFGSFVLRDKKERVG 69
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P + + + V FRA + LKER+
Sbjct: 70 RNPKTGVEVPITPRRVMTFRASQLLKERI 98
>gi|319936472|ref|ZP_08010888.1| DNA-binding protein HU [Coprobacillus sp. 29_1]
gi|319808587|gb|EFW05139.1| DNA-binding protein HU [Coprobacillus sp. 29_1]
Length = 90
Score = 80.6 bits (198), Expect = 8e-14, Method: Composition-based stats.
Identities = 25/91 (27%), Positives = 47/91 (51%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K LI +++K L +D E +V+ + + M +++ G +V I GFG+F V R R
Sbjct: 1 MNKKELIDIVSQK-KDLTKKDAEALVDTVFDTMIESILEGDKVLISGFGTFKVNSRKERK 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
+P ++++ + F+ LK+ +N
Sbjct: 60 GVSPKTKEMMIIPASKTVSFKPSNRLKDAMN 90
>gi|227494793|ref|ZP_03925109.1| DNA-binding protein HU [Actinomyces coleocanis DSM 15436]
gi|226831245|gb|EEH63628.1| DNA-binding protein HU [Actinomyces coleocanis DSM 15436]
Length = 95
Score = 80.2 bits (197), Expect = 8e-14, Method: Composition-based stats.
Identities = 23/89 (25%), Positives = 39/89 (43%), Gaps = 1/89 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
++ L+ IA K + + + E +T++LA G V++ G S +RAAR
Sbjct: 6 NRTQLVAAIADK-ANITKVQADAALVAFQEVLTESLAAGETVKVTGLFSVERVERAARTG 64
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P + I + AG LK+ +
Sbjct: 65 RNPQTGEQIQIPAGFGVKISAGSTLKKAV 93
>gi|186683386|ref|YP_001866582.1| histone family protein DNA-binding protein [Nostoc punctiforme
PCC 73102]
gi|186465838|gb|ACC81639.1| histone family protein DNA-binding protein [Nostoc punctiforme
PCC 73102]
Length = 91
Score = 80.2 bits (197), Expect = 8e-14, Method: Composition-based stats.
Identities = 31/90 (34%), Positives = 53/90 (58%), Gaps = 1/90 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K L+ +A K + + +++++ L +T+A+ANG +V + GFGSF R+RA R
Sbjct: 1 MNKGELVDAVATKT-NITKKQADEVISAFLSVVTEAVANGEKVTLIGFGSFERRERAERE 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P Q+ +++ +P F AGK KE++
Sbjct: 60 GRNPKTQETMTIPATRIPAFSAGKQFKEKV 89
>gi|257451702|ref|ZP_05617001.1| DNA-binding protein HU [Fusobacterium sp. 3_1_5R]
gi|257467010|ref|ZP_05631321.1| DNA-binding protein HU [Fusobacterium gonidiaformans ATCC 25563]
gi|315918148|ref|ZP_07914388.1| DNA-binding protein HU [Fusobacterium gonidiaformans ATCC 25563]
gi|317058261|ref|ZP_07922746.1| DNA-binding protein HU [Fusobacterium sp. 3_1_5R]
gi|313683937|gb|EFS20772.1| DNA-binding protein HU [Fusobacterium sp. 3_1_5R]
gi|313692023|gb|EFS28858.1| DNA-binding protein HU [Fusobacterium gonidiaformans ATCC 25563]
Length = 105
Score = 80.2 bits (197), Expect = 8e-14, Method: Composition-based stats.
Identities = 30/91 (32%), Positives = 41/91 (45%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K I AK + EK+V L + + L G V GFG F R AR
Sbjct: 1 MNKKDFIALFAKNAELKTKTEAEKLVAAFLNTVEETLVAGDGVAFMGFGKFETLVREART 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
P ++ ++V K V F+AGK L E++N
Sbjct: 61 CVNPRTKEKMNVAAKKVVRFKAGKALAEKVN 91
>gi|225174944|ref|ZP_03728941.1| histone family protein DNA-binding protein [Dethiobacter
alkaliphilus AHT 1]
gi|225169584|gb|EEG78381.1| histone family protein DNA-binding protein [Dethiobacter
alkaliphilus AHT 1]
Length = 84
Score = 80.2 bits (197), Expect = 8e-14, Method: Composition-based stats.
Identities = 29/82 (35%), Positives = 47/82 (57%), Gaps = 1/82 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
MIK+ + +IA+K + +D E VN L++ +T++L+ G V++ GFG+F +R R
Sbjct: 1 MIKTDVARSIAEKL-NIQVKDAETTVNGLIDTITESLSAGEAVKLAGFGTFDLRHAPERA 59
Query: 61 ARAPLAQKVISVEEKMVPFFRA 82
AR P + + V P FRA
Sbjct: 60 ARNPKTGETVQVPATHYPTFRA 81
>gi|56551140|ref|YP_161979.1| histone family protein DNA-binding protein [Zymomonas mobilis
subsp. mobilis ZM4]
gi|241761496|ref|ZP_04759584.1| histone family protein DNA-binding protein [Zymomonas mobilis
subsp. mobilis ATCC 10988]
gi|260753209|ref|YP_003226102.1| histone family protein DNA-binding protein [Zymomonas mobilis
subsp. mobilis NCIMB 11163]
gi|56542714|gb|AAV88868.1| histone family protein DNA-binding protein [Zymomonas mobilis
subsp. mobilis ZM4]
gi|241374403|gb|EER63900.1| histone family protein DNA-binding protein [Zymomonas mobilis
subsp. mobilis ATCC 10988]
gi|258552572|gb|ACV75518.1| histone family protein DNA-binding protein [Zymomonas mobilis
subsp. mobilis NCIMB 11163]
Length = 91
Score = 80.2 bits (197), Expect = 8e-14, Method: Composition-based stats.
Identities = 26/92 (28%), Positives = 42/92 (45%), Gaps = 1/92 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M + L+ IA L D +K+V+ + + A G + + GFG F V+ AAR
Sbjct: 1 MNSNDLVDRIA-SGQGLTKTDAKKLVDAVFSTIVDAAVAGEEIALNGFGKFKVKHSAARK 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
P + I + F + K +K+RLN+
Sbjct: 60 GHNPATLQEIEIPASNRLTFTSAKAVKDRLNA 91
>gi|312114064|ref|YP_004011660.1| integration host factor, subunit alpha [Rhodomicrobium vannielii
ATCC 17100]
gi|311219193|gb|ADP70561.1| integration host factor, alpha subunit [Rhodomicrobium vannielii
ATCC 17100]
Length = 233
Score = 80.2 bits (197), Expect = 8e-14, Method: Composition-based stats.
Identities = 22/91 (24%), Positives = 52/91 (57%), Gaps = 1/91 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
++ L + +K L + ++V ++L+++ AL G +++ FGSF +R+++ R+
Sbjct: 9 TRADLAEAVFEK-VGLPRNEAAELVELVLKQIVYALERGEPIKLSSFGSFGLRQKSERVG 67
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P +++ + + V F+A +K+R+N+
Sbjct: 68 RNPKTGEIVPITPRRVIVFKASNIMKDRINA 98
>gi|332188086|ref|ZP_08389817.1| bacterial DNA-binding family protein [Sphingomonas sp. S17]
gi|332011934|gb|EGI54008.1| bacterial DNA-binding family protein [Sphingomonas sp. S17]
Length = 95
Score = 80.2 bits (197), Expect = 8e-14, Method: Composition-based stats.
Identities = 23/92 (25%), Positives = 41/92 (44%), Gaps = 1/92 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
S L ++ L D K+++ +L +T A+A G V + GFG F ++ R
Sbjct: 5 TTSDLAEQLSN-THGLAKADARKVIDAILANITAAVATGEEVSLNGFGKFKLKDTPERQG 63
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLNSP 93
R P + I++ F K +++R+N
Sbjct: 64 RNPSTGEAITIAASRKLTFAPAKAVRDRMNGK 95
>gi|152965970|ref|YP_001361754.1| histone family protein DNA-binding protein [Kineococcus
radiotolerans SRS30216]
gi|151360487|gb|ABS03490.1| histone family protein DNA-binding protein [Kineococcus
radiotolerans SRS30216]
Length = 188
Score = 80.2 bits (197), Expect = 9e-14, Method: Composition-based stats.
Identities = 23/90 (25%), Positives = 44/90 (48%), Gaps = 2/90 (2%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ ++ + + ++ V ++E + +A G ++ I GFG+F + R AR
Sbjct: 1 MNKTEMVDALETRLGG--RKEATAAVEAVIELIQLTVAKGDKIAISGFGTFEKQARNART 58
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P + + +++ VP FR G KE +
Sbjct: 59 GRNPRTGEAVKIKKTSVPRFRPGTAFKEIV 88
>gi|319942323|ref|ZP_08016638.1| integration host factor subunit alpha [Sutterella wadsworthensis
3_1_45B]
gi|319804196|gb|EFW01096.1| integration host factor subunit alpha [Sutterella wadsworthensis
3_1_45B]
Length = 114
Score = 80.2 bits (197), Expect = 9e-14, Method: Composition-based stats.
Identities = 25/89 (28%), Positives = 40/89 (44%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+SL + L+ + IV E + + L G V+I G G+FSVR + AR
Sbjct: 16 NKASLAEALVDHVAGLDRPHAKLIVETFFELVAEHLEKGDTVKIPGLGNFSVRDKVARPG 75
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R + +++ E+ V F L R+
Sbjct: 76 RNLKTGETVTITERRVVTFHPSGTLNSRV 104
>gi|315223284|ref|ZP_07865145.1| DNA-binding protein HU [Streptococcus anginosus F0211]
gi|319938741|ref|ZP_08013105.1| nucleoid DNA-binding protein [Streptococcus anginosus 1_2_62CV]
gi|315187716|gb|EFU21470.1| DNA-binding protein HU [Streptococcus anginosus F0211]
gi|315419709|gb|ADU15824.1| histone-like protein [Streptococcus anginosus SK52]
gi|319811791|gb|EFW08057.1| nucleoid DNA-binding protein [Streptococcus anginosus 1_2_62CV]
Length = 91
Score = 80.2 bits (197), Expect = 9e-14, Method: Composition-based stats.
Identities = 33/90 (36%), Positives = 51/90 (56%), Gaps = 1/90 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K LI +A+ +L +D V+ + +T+ LA G +V++ GFG+F VR+RAAR
Sbjct: 3 NKQDLIAKVAEAT-ELTKKDSAAAVDAVFAAVTEYLAAGEKVQLIGFGNFEVRERAARKG 61
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P I++ VP F+AGK LK+ +
Sbjct: 62 RNPQTGAEITIAASKVPAFKAGKALKDAVK 91
>gi|117925411|ref|YP_866028.1| histone family protein DNA-binding protein [Magnetococcus sp.
MC-1]
gi|117609167|gb|ABK44622.1| histone family protein DNA-binding protein [Magnetococcus sp.
MC-1]
Length = 109
Score = 80.2 bits (197), Expect = 9e-14, Method: Composition-based stats.
Identities = 30/86 (34%), Positives = 47/86 (54%), Gaps = 1/86 (1%)
Query: 6 LIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLARAPL 65
LI IA+K L+ V +IV LL+ + L+ V + FG F+V+K L R P
Sbjct: 6 LIQQIARKR-NLSIAQVTEIVQDLLDGVEDCLSRHEPVILPEFGQFAVKKVPPWLGRHPQ 64
Query: 66 AQKVISVEEKMVPFFRAGKNLKERLN 91
+++ + K VPFF++ L++RLN
Sbjct: 65 TGEMMKLPGKNVPFFKSDSELRKRLN 90
>gi|295394908|ref|ZP_06805121.1| DNA-binding protein HU [Brevibacterium mcbrellneri ATCC 49030]
gi|294972241|gb|EFG48103.1| DNA-binding protein HU [Brevibacterium mcbrellneri ATCC 49030]
Length = 94
Score = 80.2 bits (197), Expect = 9e-14, Method: Composition-based stats.
Identities = 20/88 (22%), Positives = 39/88 (44%), Gaps = 1/88 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
+S L+ +A+K L + V +++ + + ++ G ++ + G+ S +RAAR
Sbjct: 4 NRSELVAEVAEKT-GLTQKQVSDVLDGVFDSFADVVSKGEKLTVPGWLSVERTERAARKG 62
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKER 89
R P + I + AG LK
Sbjct: 63 RNPQTGEEIQIAAGYSVKLSAGSKLKAA 90
>gi|32491258|ref|NP_871512.1| hypothetical protein WGLp509 [Wigglesworthia glossinidia
endosymbiont of Glossina brevipalpis]
gi|25166465|dbj|BAC24655.1| hupA [Wigglesworthia glossinidia endosymbiont of Glossina
brevipalpis]
Length = 90
Score = 80.2 bits (197), Expect = 9e-14, Method: Composition-based stats.
Identities = 31/91 (34%), Positives = 46/91 (50%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI IA K +L+ + L+ +T +L G V++ GFG+F + +R AR
Sbjct: 1 MNKTQLIDVIANK-AELSKIKARAALESTLDAITNSLKEGNAVQLIGFGTFKINRRNART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P K I + VP F +GK LK +
Sbjct: 60 GRNPQTGKEIKIAATNVPTFVSGKALKAAVK 90
>gi|78188818|ref|YP_379156.1| histone-like DNA-binding protein [Chlorobium chlorochromatii
CaD3]
gi|78171017|gb|ABB28113.1| Histone-like DNA-binding protein [Chlorobium chlorochromatii
CaD3]
Length = 102
Score = 80.2 bits (197), Expect = 9e-14, Method: Composition-based stats.
Identities = 35/89 (39%), Positives = 52/89 (58%), Gaps = 1/89 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K L+ TIA +N L + E +VN L E + ++L G R+EIRGFGSF++R++ R A
Sbjct: 6 TKIDLVTTIA-RNTGLTKYETEAVVNCLFESIIESLKAGRRIEIRGFGSFNIRQKNVRKA 64
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P + + VE K VP F+ + K +
Sbjct: 65 RNPRTGEKVMVESKQVPSFKISREFKLAV 93
>gi|116695179|ref|YP_840755.1| HU family DNA-binding protein [Ralstonia eutropha H16]
gi|113529678|emb|CAJ96025.1| DNA-binding protein HU family [Ralstonia eutropha H16]
Length = 93
Score = 80.2 bits (197), Expect = 1e-13, Method: Composition-based stats.
Identities = 32/94 (34%), Positives = 48/94 (51%), Gaps = 1/94 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K L+ IA + +L+ E+ +N L+ + +A+A G V + GFGSFS KRAAR
Sbjct: 1 MNKGELVSAIAAE-AELSNAAAERALNAALDSIKKAVAKGDSVTLVGFGSFSAGKRAART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSPD 94
R P + I + F AG+ K+ +N
Sbjct: 60 GRNPRTGETIKIPAAKTVKFSAGQGFKDAVNKKK 93
>gi|269468323|gb|EEZ79999.1| bacterial nucleoid DNA-binding protein [uncultured SUP05 cluster
bacterium]
Length = 95
Score = 80.2 bits (197), Expect = 1e-13, Method: Composition-based stats.
Identities = 22/86 (25%), Positives = 47/86 (54%), Gaps = 1/86 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K ++ + ++ +++ + N + + Q LA G V++ GFG+F++R+++AR
Sbjct: 4 TKKDIVDALVERLS-MSHNQALVVTNEFFDSIKQTLALGEDVKLSGFGNFNIRQKSARPG 62
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLK 87
R P + +++ + V F+AG LK
Sbjct: 63 RNPKTGETVTISARKVVTFKAGPKLK 88
>gi|319763435|ref|YP_004127372.1| histone family protein DNA-binding protein [Alicycliphilus
denitrificans BC]
gi|330824318|ref|YP_004387621.1| histone family protein DNA-binding protein [Alicycliphilus
denitrificans K601]
gi|317117996|gb|ADV00485.1| histone family protein DNA-binding protein [Alicycliphilus
denitrificans BC]
gi|329309690|gb|AEB84105.1| histone family protein DNA-binding protein [Alicycliphilus
denitrificans K601]
Length = 111
Score = 80.2 bits (197), Expect = 1e-13, Method: Composition-based stats.
Identities = 26/96 (27%), Positives = 44/96 (45%), Gaps = 1/96 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M ++ L+ +A KN L+ ++ L E + A+ G V++ GFG+F KRAAR
Sbjct: 12 MNRAQLVEILASKN-DLSKTAANAVLETLTETIQTAVKKGDTVQLVGFGTFKSAKRAART 70
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDST 96
+ P + + VP F G K ++ +
Sbjct: 71 GKNPATGAALKIPASTVPKFVPGAKFKAVVDPKAAK 106
>gi|148555235|ref|YP_001262817.1| histone family protein DNA-binding protein [Sphingomonas
wittichii RW1]
gi|148500425|gb|ABQ68679.1| histone family protein DNA-binding protein [Sphingomonas
wittichii RW1]
Length = 91
Score = 79.8 bits (196), Expect = 1e-13, Method: Composition-based stats.
Identities = 25/91 (27%), Positives = 43/91 (47%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M + + G +A + ++ +++++ L+ +T A G V + GFG F V R AR
Sbjct: 1 MNTADIAGVVAAEQ-GIDKAAAKRVIDAALKAITDAAKKGDEVSLPGFGKFKVTDRPARE 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P +++ F A K LK+ LN
Sbjct: 60 GRNPATGATLTIAASKKVSFTAAKALKDALN 90
>gi|222148217|ref|YP_002549174.1| integration host factor subunit alpha [Agrobacterium vitis S4]
gi|254803508|sp|B9JV88|IHFA_AGRVS RecName: Full=Integration host factor subunit alpha;
Short=IHF-alpha
gi|221735205|gb|ACM36168.1| integration host factor alpha subunit [Agrobacterium vitis S4]
Length = 112
Score = 79.8 bits (196), Expect = 1e-13, Method: Composition-based stats.
Identities = 21/89 (23%), Positives = 47/89 (52%), Gaps = 1/89 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
++ L ++ +K L+ + ++V +++E+ A+ G V++ F +F VR + R+
Sbjct: 7 TRADLAESVFRK-VGLSRTESAELVETVIDEICNAIVRGEMVKLSSFATFQVRAKNERIG 65
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P + + + + V F+A LK+R+
Sbjct: 66 RNPKTGEEVPISPRKVMTFKASNVLKQRI 94
>gi|300726153|ref|ZP_07059610.1| DNA-binding protein HU [Prevotella bryantii B14]
gi|299776623|gb|EFI73176.1| DNA-binding protein HU [Prevotella bryantii B14]
Length = 94
Score = 79.8 bits (196), Expect = 1e-13, Method: Composition-based stats.
Identities = 23/87 (26%), Positives = 39/87 (44%), Gaps = 2/87 (2%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGG-RVEIRGFGSFSVRKRAAR 59
M K+ LI +A++ L + K+VN +L + L G + I FG F V++ R
Sbjct: 1 MNKTELISKVAEQ-ANLTKAESSKLVNAVLGAIADNLCEGDGLLAIPDFGRFQVKQVPER 59
Query: 60 LARAPLAQKVISVEEKMVPFFRAGKNL 86
P ++ I + F+A N+
Sbjct: 60 TGINPSTKEKIVIPAHDKIVFKASDNM 86
>gi|326445075|ref|ZP_08219809.1| DNA-binding protein HU 1 [Streptomyces clavuligerus ATCC 27064]
Length = 93
Score = 79.8 bits (196), Expect = 1e-13, Method: Composition-based stats.
Identities = 26/94 (27%), Positives = 43/94 (45%), Gaps = 2/94 (2%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGG-RVEIRGFGSFSVRKRAAR 59
M ++ LI + ++ ++ +D + ++ L E + + +A G +V I GF +F RAAR
Sbjct: 1 MNRTELIAALTER-AEVTRKDADAVLTALAETVGEIVAKGDEKVTIPGFLTFERIHRAAR 59
Query: 60 LARAPLAQKVISVEEKMVPFFRAGKNLKERLNSP 93
AR P I + AG LKE
Sbjct: 60 TARNPQTGDPIQIPAGYSVKVSAGSKLKEAAKGK 93
>gi|325284684|ref|YP_004264147.1| histone family protein DNA-binding protein [Deinococcus
proteolyticus MRP]
gi|324316173|gb|ADY27287.1| histone family protein DNA-binding protein [Deinococcus
proteolyticus MRP]
Length = 89
Score = 79.8 bits (196), Expect = 1e-13, Method: Composition-based stats.
Identities = 24/87 (27%), Positives = 43/87 (49%), Gaps = 1/87 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS L+ +A++ L + ++ V+ +L+ + +AL G V + G G+ SV++ AAR
Sbjct: 1 MNKSQLVEKVAEQT-GLTKKQADEAVSTMLDTVVEALRGGQAVGLPGLGTLSVKETAART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLK 87
P + I + F+ LK
Sbjct: 60 GVKPGTTEKIQIPAGKKVAFKVATTLK 86
>gi|3334159|sp|P73418|DBH_SYNY3 RecName: Full=DNA-binding protein HU
Length = 100
Score = 79.8 bits (196), Expect = 1e-13, Method: Composition-based stats.
Identities = 25/95 (26%), Positives = 48/95 (50%), Gaps = 5/95 (5%)
Query: 1 MIKSSLIGTIAKKNPK-----LNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRK 55
M K L+ + K + + ++V+ +++ ++ + + +A G +V + GFGSF R+
Sbjct: 1 MNKGELVHAVTDKAKEQLGESITKKEVDAVISAAIDCIMEVVAEGEKVTLVGFGSFEARE 60
Query: 56 RAARLARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R R R P + + VP F AGK K+++
Sbjct: 61 RKEREGRNPKTGDKMLIPATKVPAFSAGKMFKDKV 95
>gi|171915587|ref|ZP_02931057.1| histone family protein DNA-binding protein [Verrucomicrobium
spinosum DSM 4136]
Length = 91
Score = 79.8 bits (196), Expect = 1e-13, Method: Composition-based stats.
Identities = 26/91 (28%), Positives = 42/91 (46%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPK-LNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAAR 59
M K+ LI + K + + V +L +++ +A G V++ GFG+F V KRAAR
Sbjct: 1 MNKAELIEAVQKNLGGDTSKRAASDAVEAVLASISKGVAKTGTVQLIGFGTFKVAKRAAR 60
Query: 60 LARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P + + ++ F LK L
Sbjct: 61 TGRNPKTGEAMKIKASKTVRFVPSSALKGAL 91
>gi|73537872|ref|YP_298239.1| HU family DNA-binding protein [Ralstonia eutropha JMP134]
gi|94313671|ref|YP_586880.1| histone-like DNA-binding protein [Cupriavidus metallidurans CH34]
gi|72121209|gb|AAZ63395.1| HU family DNA-binding protein [Ralstonia eutropha JMP134]
gi|93357523|gb|ABF11611.1| Histone-like bacterial DNA-binding protein [Cupriavidus
metallidurans CH34]
Length = 93
Score = 79.8 bits (196), Expect = 1e-13, Method: Composition-based stats.
Identities = 32/94 (34%), Positives = 48/94 (51%), Gaps = 1/94 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K L+ IA + +L+ E+ +N L+ + +A+A G V + GFGSFS KRAAR
Sbjct: 1 MNKGELVSAIAAE-AELSNAAAERALNAALDSIKKAVAKGDSVTLVGFGSFSSGKRAART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSPD 94
R P + I + F AG+ K+ +N
Sbjct: 60 GRNPRTGETIKIPAAKTVKFSAGQGFKDAVNKKK 93
>gi|261878950|ref|ZP_06005377.1| DNA-binding protein HU [Prevotella bergensis DSM 17361]
gi|270334461|gb|EFA45247.1| DNA-binding protein HU [Prevotella bergensis DSM 17361]
Length = 91
Score = 79.8 bits (196), Expect = 1e-13, Method: Composition-based stats.
Identities = 28/92 (30%), Positives = 48/92 (52%), Gaps = 1/92 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ L+ IA L+ D +K ++ + +AL +G +V++ GFG+FS ++R AR
Sbjct: 1 MNKTELVKKIADAT-GLSAADAKKALDATTCAIKEALVDGDKVQLIGFGTFSTKERPARQ 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
P + + I + K V F G +E +N
Sbjct: 60 GVNPSSGEKIQIAAKTVVKFNPGSEFEEAVNK 91
>gi|255019397|ref|ZP_05291506.1| Integration host factor beta subunit [Acidithiobacillus caldus
ATCC 51756]
gi|254971169|gb|EET28622.1| Integration host factor beta subunit [Acidithiobacillus caldus
ATCC 51756]
Length = 71
Score = 79.8 bits (196), Expect = 1e-13, Method: Composition-based stats.
Identities = 25/59 (42%), Positives = 37/59 (62%)
Query: 33 MTQALANGGRVEIRGFGSFSVRKRAARLARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
++ AL R+EIRGFGSFS+ R + R P + + V EK VP F+ GK L+E+++
Sbjct: 5 LSDALRENERIEIRGFGSFSLHIRPEKQGRNPKTGEPVWVPEKRVPHFKPGKELREQVD 63
>gi|218961276|ref|YP_001741051.1| HU, DNA-binding transcriptional regulator, alpha subunit
[Candidatus Cloacamonas acidaminovorans]
gi|167729933|emb|CAO80845.1| HU, DNA-binding transcriptional regulator, alpha subunit
[Candidatus Cloacamonas acidaminovorans]
Length = 93
Score = 79.8 bits (196), Expect = 1e-13, Method: Composition-based stats.
Identities = 33/94 (35%), Positives = 50/94 (53%), Gaps = 1/94 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M + L+ IA N + + + +LE +T++L G +V + GFGSFSV R AR
Sbjct: 1 MSRDELVKKIAA-NAGTSQKVASAALTAVLEGITESLKKGEKVSLVGFGSFSVAHRKARN 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSPD 94
P +K + + + VP F+AGKNLKE +
Sbjct: 60 GINPKTKKPLKIPARNVPVFKAGKNLKEAVKKAK 93
>gi|206889442|ref|YP_002249053.1| integration host factor alpha-subunit [Thermodesulfovibrio
yellowstonii DSM 11347]
gi|206741380|gb|ACI20437.1| integration host factor alpha-subunit [Thermodesulfovibrio
yellowstonii DSM 11347]
Length = 94
Score = 79.8 bits (196), Expect = 1e-13, Method: Composition-based stats.
Identities = 28/93 (30%), Positives = 51/93 (54%), Gaps = 1/93 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ L+ I ++ L ++ KIV + E M +AL V+I GFG F+VR++ +R+
Sbjct: 1 MTKADLVNFIFER-VGLPRTEIHKIVETVFETMKEALQEEEVVKISGFGVFTVRRKGSRI 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSP 93
R P +++ ++ + V FR + LK+ +
Sbjct: 60 GRNPKTMQIVEIKPRKVVTFRPSEQLKQSIQKN 92
>gi|39938728|ref|NP_950494.1| nucleoid DNA-binding protein [Onion yellows phytoplasma OY-M]
gi|39721837|dbj|BAD04327.1| bacterial nucleoid DNA-binding protein [Onion yellows phytoplasma
OY-M]
Length = 94
Score = 79.8 bits (196), Expect = 1e-13, Method: Composition-based stats.
Identities = 28/91 (30%), Positives = 51/91 (56%), Gaps = 4/91 (4%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQAL---ANGGRVEIRGFGSFSVRKRA 57
M K + +A+KN ++ ++ +K +N +E ++Q+L +V + GFG+F V+ R+
Sbjct: 1 MNKLEFLRKLAEKN-GVSQKEADKFLNNFIEVISQSLQEFKEDEKVTLTGFGTFEVKHRS 59
Query: 58 ARLARAPLAQKVISVEEKMVPFFRAGKNLKE 88
AR + P K I + K VP F+ K+ K+
Sbjct: 60 AREGKNPRTGKTIDIPAKKVPTFKFSKSFKD 90
>gi|284988917|ref|YP_003407471.1| histone family protein DNA-binding protein [Geodermatophilus
obscurus DSM 43160]
gi|284062162|gb|ADB73100.1| histone family protein DNA-binding protein [Geodermatophilus
obscurus DSM 43160]
Length = 94
Score = 79.8 bits (196), Expect = 1e-13, Method: Composition-based stats.
Identities = 24/89 (26%), Positives = 42/89 (47%), Gaps = 1/89 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ L+ IAK+ + V+ ++ L +E+ A+ G +V + G + +R+AR
Sbjct: 1 MNKAELVSAIAKR-ADVPTSTVDSVLTGLQDELVDAITRGEKVAVSGLLTVERTQRSART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKER 89
R P + I + AG NLK+
Sbjct: 60 GRNPQTGESIDIPAANTVKVTAGSNLKKA 88
>gi|85709150|ref|ZP_01040216.1| integration host factor alpha-subunit [Erythrobacter sp. NAP1]
gi|85690684|gb|EAQ30687.1| integration host factor alpha-subunit [Erythrobacter sp. NAP1]
Length = 99
Score = 79.8 bits (196), Expect = 1e-13, Method: Composition-based stats.
Identities = 31/89 (34%), Positives = 50/89 (56%), Gaps = 1/89 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
++ L TI +K L+ + +V +L +M+ ALANG V+I GFGSF +R + R+
Sbjct: 8 TRADLAETINRKM-GLSRAESLDLVESILTKMSDALANGENVKISGFGSFVLRDKNERIG 66
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P + + + V FRA + LKE++
Sbjct: 67 RNPKTGVEVPITPRRVLTFRASQLLKEQI 95
>gi|190891218|ref|YP_001977760.1| integration host factor protein, alpha subunit [Rhizobium etli
CIAT 652]
gi|218515089|ref|ZP_03511929.1| integration host factor subunit alpha [Rhizobium etli 8C-3]
gi|226709742|sp|B3PVE1|IHFA_RHIE6 RecName: Full=Integration host factor subunit alpha;
Short=IHF-alpha
gi|190696497|gb|ACE90582.1| integration host factor protein, alpha subunit [Rhizobium etli
CIAT 652]
Length = 112
Score = 79.8 bits (196), Expect = 1e-13, Method: Composition-based stats.
Identities = 21/89 (23%), Positives = 46/89 (51%), Gaps = 1/89 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
++ L ++ +K L+ + ++V +++E+ A+ G V++ F +F VR + R+
Sbjct: 7 TRADLAESVFRK-VGLSRTESAELVETVIDEICNAIVRGETVKLSSFATFQVRDKNERIG 65
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P + + + + V F+A LK R+
Sbjct: 66 RNPKTGEEVPISPRRVMTFKASNVLKTRI 94
>gi|86357171|ref|YP_469063.1| integration host factor subunit alpha [Rhizobium etli CFN 42]
gi|123738362|sp|Q2KA00|IHFA_RHIEC RecName: Full=Integration host factor subunit alpha;
Short=IHF-alpha
gi|86281273|gb|ABC90336.1| integration host factor alpha-subunit protein [Rhizobium etli CFN
42]
Length = 112
Score = 79.8 bits (196), Expect = 1e-13, Method: Composition-based stats.
Identities = 21/89 (23%), Positives = 46/89 (51%), Gaps = 1/89 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
++ L ++ +K L+ + ++V +++E+ A+ G V++ F +F VR + R+
Sbjct: 7 TRADLAESVFRK-VGLSRTESAELVETVIDEICNAIVRGETVKLSSFATFQVRDKNERIG 65
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P + + + + V F+A LK R+
Sbjct: 66 RNPKTGEEVPISPRRVMTFKASNVLKTRI 94
>gi|329850595|ref|ZP_08265440.1| integration host factor subunit alpha [Asticcacaulis biprosthecum
C19]
gi|328840910|gb|EGF90481.1| integration host factor subunit alpha [Asticcacaulis biprosthecum
C19]
Length = 100
Score = 79.8 bits (196), Expect = 1e-13, Method: Composition-based stats.
Identities = 27/91 (29%), Positives = 48/91 (52%), Gaps = 1/91 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
++ L + + L Q+ IV L+ + AL G V++ GFG F VR++ AR+
Sbjct: 7 TRAELFEDVHNEL-GLPRQECAAIVERTLDLVVDALERGEMVKLSGFGVFQVREKNARVG 65
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P K +++ + V FRA + +K R+++
Sbjct: 66 RNPKTGKPAAIDPRKVISFRASQIMKARVDA 96
>gi|158522867|ref|YP_001530737.1| histone family protein DNA-binding protein [Desulfococcus
oleovorans Hxd3]
gi|158511693|gb|ABW68660.1| histone family protein DNA-binding protein [Desulfococcus
oleovorans Hxd3]
Length = 90
Score = 79.8 bits (196), Expect = 1e-13, Method: Composition-based stats.
Identities = 28/91 (30%), Positives = 47/91 (51%), Gaps = 2/91 (2%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGG-RVEIRGFGSFSVRKRAAR 59
M K+ LI +A + K+ K ++ ++ +T+AL +V + GFG+F+ R AR
Sbjct: 1 MTKAELIDKMAA-DAKITKMAAGKALDAFMDGVTKALKKKEGKVTLVGFGTFAKAHRKAR 59
Query: 60 LARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P K I ++ V FR GK L++ +
Sbjct: 60 TGRNPQTGKPIKIKACNVVKFRPGKKLRDDV 90
>gi|308808790|ref|XP_003081705.1| unnamed protein product [Ostreococcus tauri]
gi|116060170|emb|CAL56229.1| unnamed protein product [Ostreococcus tauri]
Length = 123
Score = 79.8 bits (196), Expect = 1e-13, Method: Composition-based stats.
Identities = 22/93 (23%), Positives = 42/93 (45%), Gaps = 1/93 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K +LI +A + + V +++N + + + +G +V I FG+F+ + RAAR
Sbjct: 32 NKKTLIDAVAAETGE-TKASVGRVLNACFDVIGATVQSGDKVAISKFGTFARKTRAARDG 90
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLNSPD 94
R P+ + + P F A K+ +
Sbjct: 91 RNPMTGAPLKIPATDYPSFSASSTWKDAVAGKK 123
>gi|78224250|ref|YP_385997.1| histone-like DNA-binding protein [Geobacter metallireducens
GS-15]
gi|78195505|gb|ABB33272.1| Histone-like DNA-binding protein [Geobacter metallireducens
GS-15]
Length = 97
Score = 79.8 bits (196), Expect = 1e-13, Method: Composition-based stats.
Identities = 28/92 (30%), Positives = 50/92 (54%), Gaps = 1/92 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ L I ++ ++ ++V +++E + A+A G V+I GFG+F VR++ R
Sbjct: 1 MTKADLADKIQERIS-CQKKEAVELVELVMESLKDAIATEGLVKISGFGNFVVRQKTDRA 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P + I++ + V F+ LK R+NS
Sbjct: 60 GRNPQTGETITISSRKVLTFKPSVILKNRINS 91
>gi|319645785|ref|ZP_08000015.1| DNA-binding protein HU 1 [Bacillus sp. BT1B_CT2]
gi|317391535|gb|EFV72332.1| DNA-binding protein HU 1 [Bacillus sp. BT1B_CT2]
Length = 91
Score = 79.8 bits (196), Expect = 1e-13, Method: Composition-based stats.
Identities = 30/73 (41%), Positives = 46/73 (63%), Gaps = 1/73 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K LIG +A+ +L +DVE +V+ + +T AL +G +V++ GFGSF VR+RAAR
Sbjct: 1 MNKKELIGAVAEAT-ELTKKDVELVVDSTFDVITSALKDGEKVKVHGFGSFEVRERAARK 59
Query: 61 ARAPLAQKVISVE 73
R P + + I +
Sbjct: 60 GRNPQSGEEIEIP 72
>gi|222085523|ref|YP_002544053.1| integration host factor, alpha subunit [Agrobacterium radiobacter
K84]
gi|254803507|sp|B9JCZ0|IHFA_AGRRK RecName: Full=Integration host factor subunit alpha;
Short=IHF-alpha
gi|221722971|gb|ACM26127.1| integration host factor, alpha subunit [Agrobacterium radiobacter
K84]
Length = 112
Score = 79.8 bits (196), Expect = 1e-13, Method: Composition-based stats.
Identities = 21/89 (23%), Positives = 46/89 (51%), Gaps = 1/89 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
++ L ++ +K L+ + ++V +++E+ A+ G V++ F +F VR + R+
Sbjct: 7 TRADLAESVFRK-VGLSRTESAELVETVIDEICNAIVRGETVKLSSFATFQVRDKNERIG 65
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P + + + + V F+A LK R+
Sbjct: 66 RNPKTGEEVPISPRRVMTFKASNVLKTRI 94
>gi|218459471|ref|ZP_03499562.1| integration host factor subunit alpha [Rhizobium etli Kim 5]
gi|218662580|ref|ZP_03518510.1| integration host factor subunit alpha [Rhizobium etli IE4771]
Length = 112
Score = 79.8 bits (196), Expect = 1e-13, Method: Composition-based stats.
Identities = 21/89 (23%), Positives = 46/89 (51%), Gaps = 1/89 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
++ L ++ +K L+ + ++V +++E+ A+ G V++ F +F VR + R+
Sbjct: 7 TRADLAESVFRK-VGLSRTESAELVETVIDEICNAIVRGETVKLSSFATFQVRDKNERIG 65
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P + + + + V F+A LK R+
Sbjct: 66 RNPKTGEEVPISPRRVMTFKASNVLKTRI 94
>gi|241764993|ref|ZP_04762990.1| histone family protein DNA-binding protein [Acidovorax
delafieldii 2AN]
gi|241365427|gb|EER60214.1| histone family protein DNA-binding protein [Acidovorax
delafieldii 2AN]
Length = 103
Score = 79.8 bits (196), Expect = 1e-13, Method: Composition-based stats.
Identities = 26/91 (28%), Positives = 45/91 (49%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M ++ L+ +A KN L+ ++ L++ + A+ G V++ GFG+F KRAAR
Sbjct: 1 MNRAELVEILASKN-DLSKAAANAVLETLIDTIQTAVKKGNPVQLVGFGTFKSAKRAART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
+ P + + VP F AG K ++
Sbjct: 60 GKNPATGAALKIPASTVPKFVAGAKFKAVVD 90
>gi|254245990|ref|ZP_04939311.1| Integration host factor, beta subunit [Burkholderia cenocepacia
PC184]
gi|124870766|gb|EAY62482.1| Integration host factor, beta subunit [Burkholderia cenocepacia
PC184]
Length = 82
Score = 79.8 bits (196), Expect = 1e-13, Method: Composition-based stats.
Identities = 31/66 (46%), Positives = 46/66 (69%)
Query: 26 VNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLARAPLAQKVISVEEKMVPFFRAGKN 85
+ +L+ M+ ALA G R+EIRGFGSF + +R AR+ R P + + + V EK VP F+ GK
Sbjct: 1 MKTMLDAMSDALAKGHRIEIRGFGSFGLNRRPARVGRNPKSGEKVQVPEKFVPHFKPGKE 60
Query: 86 LKERLN 91
L+ER++
Sbjct: 61 LRERVD 66
>gi|254780496|ref|YP_003064909.1| integration host factor subunit alpha [Candidatus Liberibacter
asiaticus str. psy62]
gi|254040173|gb|ACT56969.1| integration host factor subunit alpha [Candidatus Liberibacter
asiaticus str. psy62]
Length = 114
Score = 79.8 bits (196), Expect = 1e-13, Method: Composition-based stats.
Identities = 22/90 (24%), Positives = 49/90 (54%), Gaps = 1/90 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
+ +S L+ +I+K+ L+ +D + V L E+ + G ++I F +F V+++ +R+
Sbjct: 5 ITRSDLVKSISKEF-GLSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R + + ++ + V F+A LK+R+
Sbjct: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
>gi|114327679|ref|YP_744836.1| integration host factor subunit alpha [Granulibacter bethesdensis
CGDNIH1]
gi|114315853|gb|ABI61913.1| integration host factor alpha-subunit [Granulibacter bethesdensis
CGDNIH1]
Length = 107
Score = 79.4 bits (195), Expect = 1e-13, Method: Composition-based stats.
Identities = 29/90 (32%), Positives = 46/90 (51%), Gaps = 1/90 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
++ L TI + L+ D ++ +LE M+ AL G V+I GFG+FSVR++ R+
Sbjct: 5 TRAHLAETIYTQ-VGLSRNDSALLLETVLERMSSALEAGESVKISGFGTFSVRQKGRRIG 63
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + + + V FR + LK N
Sbjct: 64 RNPKTGIEVPIMPRRVLVFRPSQVLKALAN 93
>gi|332886429|gb|EGK06673.1| hypothetical protein HMPREF9456_00547 [Dysgonomonas mossii DSM
22836]
Length = 88
Score = 79.4 bits (195), Expect = 1e-13, Method: Composition-based stats.
Identities = 31/86 (36%), Positives = 51/86 (59%), Gaps = 1/86 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI IA+K+ L+ D +K + +E +T+ + G+V + GFG+FSV ++AAR
Sbjct: 1 MNKTELINAIAEKS-GLSKVDSKKALEAFIESVTEEVKKDGKVALVGFGTFSVTQKAARK 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNL 86
P + VI++ K F+AG +L
Sbjct: 60 GINPRTKAVINIPAKKTVKFKAGADL 85
>gi|328949956|ref|YP_004367291.1| histone family protein DNA-binding protein [Marinithermus
hydrothermalis DSM 14884]
gi|328450280|gb|AEB11181.1| histone family protein DNA-binding protein [Marinithermus
hydrothermalis DSM 14884]
Length = 97
Score = 79.4 bits (195), Expect = 1e-13, Method: Composition-based stats.
Identities = 30/90 (33%), Positives = 48/90 (53%), Gaps = 1/90 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ L+ +A+ L +DV+ +V+ L E+ L +V++ GFG+F VRKR AR
Sbjct: 8 TKADLVNHVAE-TTGLKKKDVKAVVDAFLSEVADMLDRDYKVQLTGFGTFEVRKRKARTG 66
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
P + I + P F+ GK LKE++
Sbjct: 67 VKPGTTEKIKIPASKYPAFKPGKALKEKVK 96
>gi|299147625|ref|ZP_07040689.1| DNA-binding protein HU [Bacteroides sp. 3_1_23]
gi|298514412|gb|EFI38297.1| DNA-binding protein HU [Bacteroides sp. 3_1_23]
Length = 88
Score = 79.4 bits (195), Expect = 1e-13, Method: Composition-based stats.
Identities = 25/87 (28%), Positives = 43/87 (49%), Gaps = 1/87 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI +A K +L++ + V+ ++E + + + G V + GFGSF V++R AR
Sbjct: 1 MNKSELIKEVALK-GQLSFNEATNAVDAIMETIAETMHKGESVTLVGFGSFVVQERKARN 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLK 87
+ + K FR G ++
Sbjct: 60 GHNSATGGSMLIPAKRQVKFRPGSKMR 86
>gi|262340839|ref|YP_003283694.1| DNA-binding protein HU-beta [Blattabacterium sp. (Blattella
germanica) str. Bge]
gi|262272176|gb|ACY40084.1| DNA-binding protein HU-beta [Blattabacterium sp. (Blattella
germanica) str. Bge]
Length = 88
Score = 79.4 bits (195), Expect = 1e-13, Method: Composition-based stats.
Identities = 26/86 (30%), Positives = 44/86 (51%), Gaps = 1/86 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ L+ +IA+K + + + + +E + ++L G +V + GFG+FSV +R R
Sbjct: 1 MNKTELVNSIAEKT-GITKIKAKNVTDAFIETVIESLKKGDKVTLVGFGTFSVVERHPRN 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNL 86
P K I + K V F+ G L
Sbjct: 60 GVNPRTGKKIHIPGKKVAKFKIGAEL 85
>gi|306825075|ref|ZP_07458417.1| DNA-binding protein HU [Streptococcus sp. oral taxon 071 str.
73H25AP]
gi|304432511|gb|EFM35485.1| DNA-binding protein HU [Streptococcus sp. oral taxon 071 str.
73H25AP]
Length = 91
Score = 79.4 bits (195), Expect = 1e-13, Method: Composition-based stats.
Identities = 33/90 (36%), Positives = 49/90 (54%), Gaps = 1/90 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K LI +A+ L +D V+ + +T+ L G +V++ GFG+F VR+RAAR
Sbjct: 3 NKQDLIAKVAEAT-DLTKKDSAAAVDAVFAAVTEYLTAGEKVQLIGFGNFEVRERAARKG 61
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P K I + VP F+AGK LK+ +
Sbjct: 62 RNPQTGKEIEIAASKVPAFKAGKALKDAVK 91
>gi|187736379|ref|YP_001878491.1| histone family protein DNA-binding protein [Akkermansia
muciniphila ATCC BAA-835]
gi|187426431|gb|ACD05710.1| histone family protein DNA-binding protein [Akkermansia
muciniphila ATCC BAA-835]
Length = 89
Score = 79.4 bits (195), Expect = 1e-13, Method: Composition-based stats.
Identities = 26/89 (29%), Positives = 43/89 (48%), Gaps = 1/89 (1%)
Query: 1 MIKSSLIGTIAKKN-PKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAAR 59
M K+ LI I K + E+ + +LE + + + G+V+I GFG+F+ + R AR
Sbjct: 1 MNKAQLIELIQSKLGADTTKKHAEEALAAVLESIKEGVKESGKVQIIGFGTFATKTREAR 60
Query: 60 LARAPLAQKVISVEEKMVPFFRAGKNLKE 88
R P I++ F+A LK+
Sbjct: 61 TGRNPKTGNTINIPASKTVAFKASSALKD 89
>gi|71909124|ref|YP_286711.1| histone-like DNA-binding protein [Dechloromonas aromatica RCB]
gi|71848745|gb|AAZ48241.1| Histone-like bacterial DNA-binding protein [Dechloromonas
aromatica RCB]
Length = 99
Score = 79.4 bits (195), Expect = 1e-13, Method: Composition-based stats.
Identities = 25/90 (27%), Positives = 41/90 (45%), Gaps = 1/90 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS L+ +A K + +K ++ ++ + + G V + GFG+F KRAAR
Sbjct: 1 MNKSELVE-VAAKEAGITKAAADKALSAIIGAVVATVTKGESVTLVGFGTFKSAKRAART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
+ P + + VP F AG K +
Sbjct: 60 GKNPKTGATLKIPATTVPKFTAGTAFKASV 89
>gi|294083743|ref|YP_003550500.1| integration host factor subunit alpha [Candidatus
Puniceispirillum marinum IMCC1322]
gi|292663315|gb|ADE38416.1| integration host factor, alpha subunit [Candidatus
Puniceispirillum marinum IMCC1322]
Length = 97
Score = 79.4 bits (195), Expect = 1e-13, Method: Composition-based stats.
Identities = 20/91 (21%), Positives = 44/91 (48%), Gaps = 1/91 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
++ L + ++ L+ + +V ++EE+ L + V++ FG+FSV+ + R+
Sbjct: 6 TRADLTEAVY-RSVGLSRNESSDLVEAVIEEICSCLESNEEVKLSSFGTFSVQSKTERVG 64
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P + + V F+ LK R+++
Sbjct: 65 RNPKTGVEAVITPRRVLSFKPSHILKNRVDA 95
>gi|158521728|ref|YP_001529598.1| histone family protein DNA-binding protein [Desulfococcus
oleovorans Hxd3]
gi|158510554|gb|ABW67521.1| histone family protein DNA-binding protein [Desulfococcus
oleovorans Hxd3]
Length = 90
Score = 79.4 bits (195), Expect = 1e-13, Method: Composition-based stats.
Identities = 29/91 (31%), Positives = 49/91 (53%), Gaps = 2/91 (2%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGG-RVEIRGFGSFSVRKRAAR 59
M KS LI +AK+ ++ +N ++ +++AL +V + GFG+FS +R AR
Sbjct: 1 MTKSELIDKMAKE-AGISKVAAGAALNSFMDGVSKALKKKEGKVTLVGFGTFSKVRRKAR 59
Query: 60 LARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P + I ++ V F+AGK LK+ +
Sbjct: 60 KGRNPQTGEPIKIKAGNVVKFKAGKKLKDAI 90
>gi|114799692|ref|YP_759440.1| DNA-binding protein HU [Hyphomonas neptunium ATCC 15444]
gi|114739866|gb|ABI77991.1| DNA-binding protein HU [Hyphomonas neptunium ATCC 15444]
Length = 88
Score = 79.4 bits (195), Expect = 1e-13, Method: Composition-based stats.
Identities = 29/88 (32%), Positives = 43/88 (48%), Gaps = 1/88 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K L +A + L+ D K V+ L E + A + +V I GFG+FS + R AR
Sbjct: 1 MNKGELTKAVAAAS-GLSQSDAGKAVDALFETVAAAAKSRQQVAIAGFGTFSAKTRNARE 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKE 88
R P ++ I + EK F+ LK+
Sbjct: 60 GRNPATKETIKIPEKTSLAFKPASALKD 87
>gi|116251406|ref|YP_767244.1| integration host factor subunit alpha [Rhizobium leguminosarum
bv. viciae 3841]
gi|123081976|sp|Q1MIS5|IHFA_RHIL3 RecName: Full=Integration host factor subunit alpha;
Short=IHF-alpha
gi|115256054|emb|CAK07135.1| putative integration host factor alpha-subunit [Rhizobium
leguminosarum bv. viciae 3841]
Length = 112
Score = 79.4 bits (195), Expect = 1e-13, Method: Composition-based stats.
Identities = 21/89 (23%), Positives = 46/89 (51%), Gaps = 1/89 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
++ L ++ +K L+ + ++V +++E+ A+ G V++ F +F VR + R+
Sbjct: 7 TRADLAESVFRK-VGLSRTESAELVETVIDEICNAIVRGETVKLSSFATFQVRDKNERIG 65
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P + + + + V F+A LK R+
Sbjct: 66 RNPKTGEEVPISPRRVMTFKASNVLKTRI 94
>gi|332670429|ref|YP_004453437.1| histone family protein DNA-binding protein [Cellulomonas fimi
ATCC 484]
gi|332339467|gb|AEE46050.1| histone family protein DNA-binding protein [Cellulomonas fimi
ATCC 484]
Length = 93
Score = 79.4 bits (195), Expect = 1e-13, Method: Composition-based stats.
Identities = 21/89 (23%), Positives = 38/89 (42%), Gaps = 1/89 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
++ L+ +A K + +K++ E + + LA G V I GF + S +R+AR
Sbjct: 4 NRTELVQAVAAK-AGTANAEADKVLKAFQEVLVEQLAAGESVTIPGFLAVSRAERSARTG 62
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERL 90
P + + + AG LK +
Sbjct: 63 INPQTGEKLEIPAGYRVKLTAGSVLKRAV 91
>gi|257451488|ref|ZP_05616787.1| DNA-binding protein HU [Fusobacterium sp. 3_1_5R]
gi|317058069|ref|ZP_07922554.1| DNA-binding protein HU [Fusobacterium sp. 3_1_5R]
gi|313683745|gb|EFS20580.1| DNA-binding protein HU [Fusobacterium sp. 3_1_5R]
Length = 92
Score = 79.4 bits (195), Expect = 1e-13, Method: Composition-based stats.
Identities = 26/92 (28%), Positives = 41/92 (44%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K I +K + EK + LE + + + GFG F V ++A RL
Sbjct: 1 MTKKEFIELYFRKGKFSTKTEAEKAMTSFLETLEEVALLNENILFSGFGKFEVVEKAERL 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P + + + K F+ GK+L E+LN+
Sbjct: 61 GRNPKTGEEVRIPAKKSMKFKPGKSLDEKLNN 92
>gi|171464303|ref|YP_001798416.1| histone family protein DNA-binding protein [Polynucleobacter
necessarius subsp. necessarius STIR1]
gi|171193841|gb|ACB44802.1| histone family protein DNA-binding protein [Polynucleobacter
necessarius subsp. necessarius STIR1]
Length = 106
Score = 79.4 bits (195), Expect = 1e-13, Method: Composition-based stats.
Identities = 28/94 (29%), Positives = 48/94 (51%), Gaps = 1/94 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ LI IA + +++ E +N +E + +A+ G V++ GFG+F+ KRAAR+
Sbjct: 14 NKAELIAAIAD-DAEISKAKAEFALNSAIENIIKAVTKGDSVQLIGFGTFASSKRAARMG 72
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDS 95
R P + + + F AGK K+ +N
Sbjct: 73 RNPKTGEPLKIAAAKTVKFSAGKAFKDSVNKRKK 106
>gi|254467817|ref|ZP_05081223.1| integration host factor, alpha subunit [beta proteobacterium
KB13]
gi|207086627|gb|EDZ63910.1| integration host factor, alpha subunit [beta proteobacterium
KB13]
Length = 98
Score = 79.4 bits (195), Expect = 1e-13, Method: Composition-based stats.
Identities = 24/94 (25%), Positives = 50/94 (53%), Gaps = 1/94 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K++L + ++ LN + +++V E++ AL NG V++ GFG+F +R ++ R
Sbjct: 4 TKANLSNLLFEQ-VGLNKTESKEMVEAFFEQIKIALENGESVKLSGFGNFELRTKSERPG 62
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDS 95
R P + + ++ + V F + + LK ++ S
Sbjct: 63 RNPKTGEEVPIKARRVVTFHSSQKLKSSVDGGSS 96
>gi|239813722|ref|YP_002942632.1| histone family protein DNA-binding protein [Variovorax paradoxus
S110]
gi|239800299|gb|ACS17366.1| histone family protein DNA-binding protein [Variovorax paradoxus
S110]
Length = 125
Score = 79.4 bits (195), Expect = 1e-13, Method: Composition-based stats.
Identities = 24/91 (26%), Positives = 42/91 (46%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M + L+ IA + ++ + +I+ + + A+ G V++ GFG+F RAAR
Sbjct: 1 MNRIELVEKIATAH-NVSKAEAARILETVTGSIVAAVKKGDPVQLIGFGTFKQVARAART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
P A I + + VP F G K ++
Sbjct: 60 GFNPQAGAKIKIAAQKVPKFVPGAAFKAAID 90
>gi|171318736|ref|ZP_02907877.1| histone family protein DNA-binding protein [Burkholderia
ambifaria MEX-5]
gi|171096052|gb|EDT40980.1| histone family protein DNA-binding protein [Burkholderia
ambifaria MEX-5]
Length = 91
Score = 79.4 bits (195), Expect = 1e-13, Method: Composition-based stats.
Identities = 30/92 (32%), Positives = 50/92 (54%), Gaps = 2/92 (2%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K LI +A + ++ + K V+ L+ + A++ G V++ GFG+FS R+RAAR
Sbjct: 1 MNKQELIDAVAA-SADVSKAEAAKSVHAALDVIVGAVSRGESVQLIGFGAFSQRQRAART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P I++ + F AGK K+ +N+
Sbjct: 60 RRNPATGAEIAIPDANTV-FTAGKAFKDAVNA 90
>gi|194291893|ref|YP_002007800.1| DNA-binding protein hu-beta, ns1 (hu-1), plays a role in DNA
replication and in rpo translation [Cupriavidus
taiwanensis LMG 19424]
gi|193225797|emb|CAQ71743.1| DNA-binding protein HU-beta, NS1 (HU-1), plays a role in DNA
replication and in rpo translation [Cupriavidus
taiwanensis LMG 19424]
Length = 93
Score = 79.4 bits (195), Expect = 1e-13, Method: Composition-based stats.
Identities = 31/94 (32%), Positives = 48/94 (51%), Gaps = 1/94 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K L+ IA + +L+ E+ +N L+ + +A+A G V + GFGSF+ KRAAR
Sbjct: 1 MNKGELVSAIAAE-AELSNAAAERALNAALDSIKKAVAKGDSVTLVGFGSFAAGKRAART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSPD 94
R P + I + F AG+ K+ +N
Sbjct: 60 GRNPRTGETIKIPAAKTVKFSAGQGFKDAVNKKK 93
>gi|14194876|sp|Q9RNZ5|IHFA_ZYMMO RecName: Full=Integration host factor subunit alpha;
Short=IHF-alpha
Length = 100
Score = 79.4 bits (195), Expect = 1e-13, Method: Composition-based stats.
Identities = 24/89 (26%), Positives = 46/89 (51%), Gaps = 1/89 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
++ + + + L+ D K++ +L +T AL G V+I GFGSF +R + R+
Sbjct: 9 TRADITDMLYHE-VGLSRADSAKMIEQMLGHITDALKKGENVKISGFGSFILRDKNERVG 67
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P + + + V FRA + +++R+
Sbjct: 68 RNPKTGIEVPIAPRRVLTFRASQLMRQRI 96
>gi|313185127|gb|ADR50128.1| histone-like protein HBbu [Borrelia burgdorferi]
Length = 108
Score = 79.4 bits (195), Expect = 1e-13, Method: Composition-based stats.
Identities = 32/95 (33%), Positives = 51/95 (53%), Gaps = 5/95 (5%)
Query: 1 MIKSSLIGTIA----KKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKR 56
+ KS ++ I+ N KL + + +++ EE+ L + +E R FG+F VRKR
Sbjct: 9 ITKSDIVDQISLNIRNNNLKLEKKYIRLVIDAFFEELKSNLCSNNVIEFRSFGTFEVRKR 68
Query: 57 AAR-LARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R AR P + + V + V +FR GK+LKER+
Sbjct: 69 KGRLNARNPQTGEYVKVLDHHVAYFRPGKDLKERV 103
>gi|110680344|ref|YP_683351.1| integration host factor subunit alpha [Roseobacter denitrificans
OCh 114]
gi|109456460|gb|ABG32665.1| integration host factor, alpha subunit [Roseobacter denitrificans
OCh 114]
Length = 112
Score = 79.4 bits (195), Expect = 2e-13, Method: Composition-based stats.
Identities = 26/95 (27%), Positives = 53/95 (55%), Gaps = 1/95 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
+ L + ++ L+ + ++V +LE ++ AL NG +V+I FG+FSVR ++AR+
Sbjct: 19 TRMDLSEAVFRE-VGLSRNESAQLVESVLEHLSDALVNGEQVKISSFGTFSVRDKSARVG 77
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDST 96
R P + + + + V FR +K+R+ + + +
Sbjct: 78 RNPKTGEEVPINPRRVLTFRPSHLMKDRVANGNKS 112
>gi|240850682|ref|YP_002972082.1| integration host factor subunit alpha [Bartonella grahamii
as4aup]
gi|240267805|gb|ACS51393.1| integration host factor subunit alpha [Bartonella grahamii
as4aup]
Length = 104
Score = 79.4 bits (195), Expect = 2e-13, Method: Composition-based stats.
Identities = 22/89 (24%), Positives = 45/89 (50%), Gaps = 1/89 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
++ L + K+ L++ + +V ++L+E+ +L G V++ F +F VR + R+
Sbjct: 7 TRADLASVVCKR-VGLSHTESAALVELVLDEICNSLVRGEAVKLSSFATFQVRSKNERVG 65
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P + + V F+A LK+R+
Sbjct: 66 RNPKTGVEAPIPPRRVVTFKAANVLKQRI 94
>gi|152966297|ref|YP_001362081.1| histone family protein DNA-binding protein [Kineococcus
radiotolerans SRS30216]
gi|151360814|gb|ABS03817.1| histone family protein DNA-binding protein [Kineococcus
radiotolerans SRS30216]
Length = 185
Score = 79.4 bits (195), Expect = 2e-13, Method: Composition-based stats.
Identities = 23/90 (25%), Positives = 44/90 (48%), Gaps = 2/90 (2%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ ++ + + ++ V ++E + +A G ++ I GFG+F + R AR
Sbjct: 1 MNKAEMVDALETRLGG--RKEATTAVEAVIELIQLTVAKGDKIAISGFGTFEKQVRNART 58
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P + + +++ VP FR G KE +
Sbjct: 59 GRNPRTGEAVKIKKTSVPRFRPGTAFKEVV 88
>gi|317485299|ref|ZP_07944179.1| bacterial DNA-binding protein [Bilophila wadsworthia 3_1_6]
gi|316923425|gb|EFV44631.1| bacterial DNA-binding protein [Bilophila wadsworthia 3_1_6]
Length = 100
Score = 79.4 bits (195), Expect = 2e-13, Method: Composition-based stats.
Identities = 26/93 (27%), Positives = 43/93 (46%), Gaps = 1/93 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ ++ I +K N DV+ V +LL M QA+ + + GFG F + AR
Sbjct: 6 TKADIVEAIYEKT-DRNRADVKNTVEILLGLMKQAIKKDDALLVSGFGKFEAYDKEARKG 64
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLNSPD 94
R P + I++ + V FR + + LN +
Sbjct: 65 RNPQTDETITLPPRKVVVFRLSRKFRAELNGEE 97
>gi|323144511|ref|ZP_08079112.1| integration host factor subunit alpha [Succinatimonas hippei YIT
12066]
gi|322415724|gb|EFY06457.1| integration host factor subunit alpha [Succinatimonas hippei YIT
12066]
Length = 94
Score = 79.4 bits (195), Expect = 2e-13, Method: Composition-based stats.
Identities = 20/89 (22%), Positives = 45/89 (50%), Gaps = 1/89 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
++ + + K + V+ E + ++L G V++ GFG+F ++ + AR
Sbjct: 4 TRAEITERLVTKY-NFPKFRAQSFVDDFFESIAKSLERGEFVKLTGFGNFELKMKTARPG 62
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P + +++ + V F+AG+ L++R+
Sbjct: 63 RNPKTGQEVTIAPRRVTTFKAGQKLRDRI 91
>gi|241204022|ref|YP_002975118.1| integration host factor subunit alpha [Rhizobium leguminosarum
bv. trifolii WSM1325]
gi|240857912|gb|ACS55579.1| integration host factor, alpha subunit [Rhizobium leguminosarum
bv. trifolii WSM1325]
Length = 112
Score = 79.4 bits (195), Expect = 2e-13, Method: Composition-based stats.
Identities = 21/89 (23%), Positives = 46/89 (51%), Gaps = 1/89 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
++ L ++ +K L+ + ++V +++E+ A+ G V++ F +F VR + R+
Sbjct: 7 TRADLAESVFRK-VGLSRTESAELVETVIDEICNAIVRGETVKLSSFATFQVRDKNERIG 65
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P + + + + V F+A LK R+
Sbjct: 66 RNPKTGEEVPISPRRVMTFKASNVLKTRI 94
>gi|218260115|ref|ZP_03475545.1| hypothetical protein PRABACTJOHN_01206 [Parabacteroides johnsonii
DSM 18315]
gi|218224732|gb|EEC97382.1| hypothetical protein PRABACTJOHN_01206 [Parabacteroides johnsonii
DSM 18315]
Length = 101
Score = 79.4 bits (195), Expect = 2e-13, Method: Composition-based stats.
Identities = 26/91 (28%), Positives = 46/91 (50%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K SL+ I+ + + + V ++N L + + +L RV I+ FGSF + +A+R
Sbjct: 1 MNKHSLVEIISDRL-NMPHDLVCSVINTLADVIADSLLEEERVVIQNFGSFRLWHQASRP 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + + + + F GK+L + LN
Sbjct: 60 VRNPKTGEPMIFQPRNSVKFVPGKHLVDLLN 90
>gi|56698562|ref|YP_168938.1| DNA-binding protein HU [Ruegeria pomeroyi DSS-3]
gi|56680299|gb|AAV96965.1| DNA-binding protein HU [Ruegeria pomeroyi DSS-3]
Length = 91
Score = 79.4 bits (195), Expect = 2e-13, Method: Composition-based stats.
Identities = 20/91 (21%), Positives = 39/91 (42%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ L+ +A+ + + ++ + +T+ ++ GG V + G G R+R R
Sbjct: 1 MTKTQLVAALAEDM-GSDKKTASAALDAVCALITREVSGGGAVTLPGVGKIYCRERPERQ 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + + V K LK+ +N
Sbjct: 60 VRNPATGETFTKAADKVVKMTIAKALKDSVN 90
>gi|307295340|ref|ZP_07575179.1| histone family protein DNA-binding protein [Sphingobium
chlorophenolicum L-1]
gi|306878843|gb|EFN10062.1| histone family protein DNA-binding protein [Sphingobium
chlorophenolicum L-1]
Length = 91
Score = 79.4 bits (195), Expect = 2e-13, Method: Composition-based stats.
Identities = 27/91 (29%), Positives = 40/91 (43%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M + L +A + L D K V+ + + A A G V + GFG F V+ + AR
Sbjct: 1 MNNTELAEALAADH-GLTKADARKYVDGVFAAIAGAAAKGDEVSLNGFGKFKVKDQPARE 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P VI + F K +K++LN
Sbjct: 60 GRNPSTGAVIQIAASKKLTFTPAKAVKDQLN 90
>gi|103486903|ref|YP_616464.1| integration host factor, alpha subunit [Sphingopyxis alaskensis
RB2256]
gi|122985051|sp|Q1GT91|IHFA_SPHAL RecName: Full=Integration host factor subunit alpha;
Short=IHF-alpha
gi|98976980|gb|ABF53131.1| integration host factor, alpha subunit [Sphingopyxis alaskensis
RB2256]
Length = 97
Score = 79.4 bits (195), Expect = 2e-13, Method: Composition-based stats.
Identities = 26/89 (29%), Positives = 48/89 (53%), Gaps = 1/89 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
++ + I + L+ + IV +L+ M+ ALA G V+I GFG+F +R +A R+
Sbjct: 7 TRADIASRI-NQQIGLSRNESAAIVESILDHMSDALAAGQNVKISGFGTFVLRDKAQRIG 65
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P + + + V FRA ++++ R+
Sbjct: 66 RNPKTGVEVPILPRRVMTFRASQSMRARV 94
>gi|126734354|ref|ZP_01750101.1| DNA-binding protein HU [Roseobacter sp. CCS2]
gi|126717220|gb|EBA14084.1| DNA-binding protein HU [Roseobacter sp. CCS2]
Length = 91
Score = 79.0 bits (194), Expect = 2e-13, Method: Composition-based stats.
Identities = 21/91 (23%), Positives = 43/91 (47%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ L+ +A++ ++ + ++ + +T+ ++ GG V + G G R+R R+
Sbjct: 1 MTKAQLVTALAEET-GMDKKAAGSALDAVTGIITKEVSGGGAVTLPGVGKIYCRERPERM 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + I + V K LK+ +N
Sbjct: 60 VRNPATGEQIKKDADKVVKMTIAKALKDSVN 90
>gi|170719347|ref|YP_001747035.1| histone family protein DNA-binding protein [Pseudomonas putida
W619]
gi|169757350|gb|ACA70666.1| histone family protein DNA-binding protein [Pseudomonas putida
W619]
Length = 99
Score = 79.0 bits (194), Expect = 2e-13, Method: Composition-based stats.
Identities = 30/95 (31%), Positives = 48/95 (50%), Gaps = 2/95 (2%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K L IA+K L + +++N +L+ +T AL V + GFG+F R R AR
Sbjct: 1 MRKPELAAVIAEK-ADLTKEKANQVLNAILDSITGALDK-DTVTLVGFGTFEKRHRGART 58
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDS 95
+ P + + ++ F+ GKNL+E +N P
Sbjct: 59 GKNPQTGEPVKIKASNTVAFKPGKNLRESVNVPAK 93
>gi|254461470|ref|ZP_05074886.1| integration host factor, alpha subunit [Rhodobacterales bacterium
HTCC2083]
gi|206678059|gb|EDZ42546.1| integration host factor, alpha subunit [Rhodobacteraceae
bacterium HTCC2083]
Length = 92
Score = 79.0 bits (194), Expect = 2e-13, Method: Composition-based stats.
Identities = 25/86 (29%), Positives = 47/86 (54%), Gaps = 1/86 (1%)
Query: 5 SLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLARAP 64
L + ++ L+ + ++V +L ++ AL G +V+I FG+FSVR +AAR+ R P
Sbjct: 2 DLSEAVFRE-VGLSRNESAELVENILTHLSDALVEGEQVKISSFGTFSVRDKAARVGRNP 60
Query: 65 LAQKVISVEEKMVPFFRAGKNLKERL 90
+ + + + V FR +K+R+
Sbjct: 61 KTGQEVPINPRRVLTFRPSHLMKDRV 86
>gi|260904564|ref|ZP_05912886.1| HU_IHF family transcriptional regulator [Brevibacterium linens
BL2]
Length = 95
Score = 79.0 bits (194), Expect = 2e-13, Method: Composition-based stats.
Identities = 21/88 (23%), Positives = 40/88 (45%), Gaps = 1/88 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
+S L+ +A+ N L + V +++ + + + + G ++ I G+ S +RAAR
Sbjct: 4 NRSELVAEVAE-NSGLTQKQVSDVLDGVFDVFSDVVGKGEKLTIPGWLSVERTERAARKG 62
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKER 89
R P + I ++ AG LK
Sbjct: 63 RNPQTGEEIQIKAGYSVKLSAGSKLKAA 90
>gi|325275144|ref|ZP_08141117.1| histone family protein DNA-binding protein [Pseudomonas sp.
TJI-51]
gi|324099716|gb|EGB97589.1| histone family protein DNA-binding protein [Pseudomonas sp.
TJI-51]
Length = 101
Score = 79.0 bits (194), Expect = 2e-13, Method: Composition-based stats.
Identities = 29/93 (31%), Positives = 49/93 (52%), Gaps = 2/93 (2%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K L IA+K L + +++N +L+ +T AL V + GFG+F R R AR
Sbjct: 1 MRKPELAAVIAEK-ADLTKEKANQVLNAILDSITGALDK-DTVTLVGFGTFEKRHRGART 58
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSP 93
+ P + + ++ F+ GKNL++ +N+P
Sbjct: 59 GKNPQTGQPVKIKASNTVAFKPGKNLRDSVNTP 91
>gi|307706517|ref|ZP_07643324.1| DNA-binding protein HU [Streptococcus mitis SK321]
gi|322376730|ref|ZP_08051223.1| DNA-binding protein HU [Streptococcus sp. M334]
gi|307617972|gb|EFN97132.1| DNA-binding protein HU [Streptococcus mitis SK321]
gi|321282537|gb|EFX59544.1| DNA-binding protein HU [Streptococcus sp. M334]
Length = 91
Score = 79.0 bits (194), Expect = 2e-13, Method: Composition-based stats.
Identities = 33/90 (36%), Positives = 49/90 (54%), Gaps = 1/90 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K LI +A+ +L +D V + + LA G +V++ GFG+F VR+RAAR
Sbjct: 3 NKQDLIAKVAEAT-ELTKKDSAAAVEAVFAAVADYLAAGEKVQLIGFGNFEVRERAARKG 61
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P K I++ VP F+AGK LK+ +
Sbjct: 62 RNPQTGKEITIAASKVPAFKAGKALKDAVK 91
>gi|315499913|ref|YP_004088716.1| histone family protein DNA-binding protein [Asticcacaulis
excentricus CB 48]
gi|315417925|gb|ADU14565.1| histone family protein DNA-binding protein [Asticcacaulis
excentricus CB 48]
Length = 100
Score = 79.0 bits (194), Expect = 2e-13, Method: Composition-based stats.
Identities = 25/91 (27%), Positives = 48/91 (52%), Gaps = 1/91 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
++ L + + L Q+ +V L+ + +L G V++ GFG F VR++ AR+
Sbjct: 7 TRAELFEAVHNEL-GLPRQECAALVERTLDLVIDSLEKGETVKLSGFGVFQVREKNARVG 65
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P K +++ + V FRA + +K R+++
Sbjct: 66 RNPKTGKPAAIDPRKVISFRASQIMKARVDA 96
>gi|326445430|ref|ZP_08220164.1| putative histone-like DNA-binding protein [Streptomyces
clavuligerus ATCC 27064]
Length = 130
Score = 79.0 bits (194), Expect = 2e-13, Method: Composition-based stats.
Identities = 29/88 (32%), Positives = 46/88 (52%), Gaps = 2/88 (2%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI +A K + + V +L+ + + + G RV + GFGSF R AR
Sbjct: 1 MNKAQLINAVADKMG--SRKQAADAVEHVLDTIVRTVVAGERVSVTGFGSFEKVSRPARY 58
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKE 88
AR P + + V++ +P FRAG+ K+
Sbjct: 59 ARNPQTGERVRVKKSSMPRFRAGQGFKD 86
>gi|323136622|ref|ZP_08071703.1| histone family protein DNA-binding protein [Methylocystis sp.
ATCC 49242]
gi|322397939|gb|EFY00460.1| histone family protein DNA-binding protein [Methylocystis sp.
ATCC 49242]
Length = 93
Score = 79.0 bits (194), Expect = 2e-13, Method: Composition-based stats.
Identities = 28/94 (29%), Positives = 46/94 (48%), Gaps = 1/94 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K L+ +A + + + ++ +++ +T+AL G V + GFG+FSV+KRAA
Sbjct: 1 MNKLELVEHVANET-ETSKAAAAAAIDAVIDGITKALKKGDEVRLVGFGTFSVKKRAAGK 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSPD 94
R P + I + F+ G LK LN
Sbjct: 60 GRNPATGEEIKIPASKSARFKPGATLKAALNKAK 93
>gi|298345223|ref|YP_003717910.1| DNA-binding protein HU [Mobiluncus curtisii ATCC 43063]
gi|304390783|ref|ZP_07372735.1| DNA-binding protein HU [Mobiluncus curtisii subsp. curtisii ATCC
35241]
gi|315655645|ref|ZP_07908543.1| DNA-binding protein HU [Mobiluncus curtisii ATCC 51333]
gi|315656440|ref|ZP_07909329.1| DNA-binding protein HU [Mobiluncus curtisii subsp. holmesii ATCC
35242]
gi|298235284|gb|ADI66416.1| DNA-binding protein HU [Mobiluncus curtisii ATCC 43063]
gi|304325666|gb|EFL92912.1| DNA-binding protein HU [Mobiluncus curtisii subsp. curtisii ATCC
35241]
gi|315489709|gb|EFU79336.1| DNA-binding protein HU [Mobiluncus curtisii ATCC 51333]
gi|315492999|gb|EFU82601.1| DNA-binding protein HU [Mobiluncus curtisii subsp. holmesii ATCC
35242]
Length = 94
Score = 79.0 bits (194), Expect = 2e-13, Method: Composition-based stats.
Identities = 22/92 (23%), Positives = 41/92 (44%), Gaps = 1/92 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
++ L+ IAKK L+ + + ++ E + +L G V++ G + RAAR
Sbjct: 4 NRTELVAEIAKK-AGLSKTEADGALSAFQEILIDSLKKGETVKVTGLMNVERVSRAARTG 62
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLNSP 93
R P + I + AG LK+ +++
Sbjct: 63 RNPRTGEEIKIPAGYGVKISAGSTLKKAVSNK 94
>gi|158521048|ref|YP_001528918.1| histone family protein DNA-binding protein [Desulfococcus
oleovorans Hxd3]
gi|158509874|gb|ABW66841.1| histone family protein DNA-binding protein [Desulfococcus
oleovorans Hxd3]
Length = 94
Score = 79.0 bits (194), Expect = 2e-13, Method: Composition-based stats.
Identities = 27/90 (30%), Positives = 52/90 (57%), Gaps = 1/90 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
KS +I ++ ++ L + +++V LLE + + LANG + + GFG F V+++ AR
Sbjct: 4 TKSRIIDSVQEET-GLPRKRCDELVEELLEIIKETLANGENLMVSGFGKFCVKEKKARKG 62
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + ++E+ V F+ + L+E++N
Sbjct: 63 RNPATGDDLMLDERKVVTFKCSQGLREKIN 92
>gi|159184652|ref|NP_354199.2| integration host factor subunit alpha [Agrobacterium tumefaciens
str. C58]
gi|23821752|sp|Q8UG61|IHFA_AGRT5 RecName: Full=Integration host factor subunit alpha;
Short=IHF-alpha
gi|159139950|gb|AAK86984.2| integration host factor alpha subunit [Agrobacterium tumefaciens
str. C58]
Length = 112
Score = 79.0 bits (194), Expect = 2e-13, Method: Composition-based stats.
Identities = 20/89 (22%), Positives = 48/89 (53%), Gaps = 1/89 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
++ L ++ +K L+ + ++V +++E+ A+ G V++ F +F +R++ R+
Sbjct: 7 TRADLAESVFRK-VGLSRTESAELVETIIDEICNAITRGEVVKLSSFATFQIREKNERIG 65
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P + + + + V F+A LK+R+
Sbjct: 66 RNPKTGEEVPISPRRVMTFKASNVLKQRI 94
>gi|281357086|ref|ZP_06243576.1| histone family protein DNA-binding protein [Victivallis vadensis
ATCC BAA-548]
gi|281316644|gb|EFB00668.1| histone family protein DNA-binding protein [Victivallis vadensis
ATCC BAA-548]
Length = 99
Score = 79.0 bits (194), Expect = 2e-13, Method: Composition-based stats.
Identities = 33/97 (34%), Positives = 50/97 (51%), Gaps = 2/97 (2%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K L+ IA++ DV ++V L+ + Q L G +E+R FG F ++ R +R
Sbjct: 1 MTKRDLVVKIARET-GFIQNDVAEVVQKTLDYIAQDLIEGHTIELRNFGVFEIKVRKSRK 59
Query: 61 ARAP-LAQKVISVEEKMVPFFRAGKNLKERLNSPDST 96
R P + + + E+ V FRAGK LKE + D T
Sbjct: 60 GRNPNQPKNEVIIPERAVVKFRAGKELKEAVEQLDPT 96
>gi|167950934|ref|ZP_02538008.1| histone family protein DNA-binding protein [Endoriftia persephone
'Hot96_1+Hot96_2']
Length = 63
Score = 79.0 bits (194), Expect = 2e-13, Method: Composition-based stats.
Identities = 20/63 (31%), Positives = 33/63 (52%)
Query: 29 LLEEMTQALANGGRVEIRGFGSFSVRKRAARLARAPLAQKVISVEEKMVPFFRAGKNLKE 88
++E +T+AL +G + ++RAAR R P + I + P F+AGK LK+
Sbjct: 1 MVEAITEALKSGDQGLAGWLWDLFGQERAARQGRNPQTGETIQIAASKTPSFKAGKALKD 60
Query: 89 RLN 91
+N
Sbjct: 61 AVN 63
>gi|320451084|ref|YP_004203180.1| DNA-binding protein HU 1 [Thermus scotoductus SA-01]
gi|320151253|gb|ADW22631.1| DNA-binding protein HU 1 [Thermus scotoductus SA-01]
Length = 97
Score = 79.0 bits (194), Expect = 2e-13, Method: Composition-based stats.
Identities = 32/91 (35%), Positives = 52/91 (57%), Gaps = 1/91 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ L+ +A L +DV+ V+ L ++ +ALA+G +V++ GFG+F VRKR AR
Sbjct: 8 TKADLVDQVAAAT-GLKKKDVKAAVDAFLSKVEEALASGNKVQLTGFGTFEVRKRKARTG 66
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
P ++ I + P F+ GK LKE++
Sbjct: 67 VKPGTKEKIKIPATQYPAFKPGKALKEKVKK 97
>gi|293371796|ref|ZP_06618206.1| DNA-binding protein HU [Bacteroides ovatus SD CMC 3f]
gi|292633248|gb|EFF51819.1| DNA-binding protein HU [Bacteroides ovatus SD CMC 3f]
Length = 88
Score = 79.0 bits (194), Expect = 2e-13, Method: Composition-based stats.
Identities = 27/87 (31%), Positives = 43/87 (49%), Gaps = 1/87 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI +A K KL++ + V+ ++E + + + G V + GFGSF ++ R AR
Sbjct: 1 MNKSELIKEVALKR-KLSFNEATNAVDAIMEAIAETMHKGEGVTLVGFGSFVIQGRKARN 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLK 87
P + + K FR G +K
Sbjct: 60 GHNPATGGSMLIPAKRQVKFRPGSKMK 86
>gi|284006424|emb|CBA71660.1| DNA-binding protein HU-beta [Arsenophonus nasoniae]
Length = 100
Score = 79.0 bits (194), Expect = 2e-13, Method: Composition-based stats.
Identities = 34/94 (36%), Positives = 53/94 (56%), Gaps = 1/94 (1%)
Query: 3 KSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLAR 62
K L+ IAK++ E ++N L+ ++Q L G +V++ GFG+F V++RAAR R
Sbjct: 8 KKELVEKIAKESKA-AKSVAESVLNAFLKTVSQTLKKGDKVQLIGFGTFEVKQRAARNGR 66
Query: 63 APLAQKVISVEEKMVPFFRAGKNLKERLNSPDST 96
P KVI + VP F+AG+ LK+ +N
Sbjct: 67 NPKTGKVIKIAAAKVPSFKAGQGLKDTVNGHKKK 100
>gi|313184943|gb|ADR50036.1| histone-like protein HBbu [Borrelia burgdorferi]
gi|313184945|gb|ADR50037.1| histone-like protein HBbu [Borrelia burgdorferi]
Length = 108
Score = 79.0 bits (194), Expect = 2e-13, Method: Composition-based stats.
Identities = 32/94 (34%), Positives = 50/94 (53%), Gaps = 5/94 (5%)
Query: 2 IKSSLIGTIA----KKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRA 57
KS ++ I+ N KL + + +++ EE+ L + +E R FG+F VRKR
Sbjct: 10 TKSDIVDQISLNIRNNNLKLEKKYIRLVIDAFFEELKSNLCSNNVIEFRSFGTFEVRKRK 69
Query: 58 AR-LARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R AR P + + V + V +FR GK+LKER+
Sbjct: 70 GRLNARNPQTGEYVKVLDHHVAYFRPGKDLKERV 103
>gi|326385372|ref|ZP_08207017.1| histone-like DNA-binding protein [Novosphingobium nitrogenifigens
DSM 19370]
gi|326210178|gb|EGD60950.1| histone-like DNA-binding protein [Novosphingobium nitrogenifigens
DSM 19370]
Length = 93
Score = 79.0 bits (194), Expect = 2e-13, Method: Composition-based stats.
Identities = 21/91 (23%), Positives = 39/91 (42%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M + L +A + L ++V+ + + +A G + + FG F V+ AR
Sbjct: 3 MNTAELAEAVA-SSQGLTKAAARELVDAVFNAIVEAATKGEEISLNAFGKFKVKDTPARE 61
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P VI++ F K +K+++N
Sbjct: 62 GRNPSTGAVIAIAASRKLTFAPAKAVKDKIN 92
>gi|288800481|ref|ZP_06405939.1| DNA-binding protein HU-beta [Prevotella sp. oral taxon 299 str.
F0039]
gi|288332694|gb|EFC71174.1| DNA-binding protein HU-beta [Prevotella sp. oral taxon 299 str.
F0039]
Length = 90
Score = 79.0 bits (194), Expect = 2e-13, Method: Composition-based stats.
Identities = 30/91 (32%), Positives = 48/91 (52%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI IA L+ +K ++ E + AL G +V++ GFG+FSV +R AR
Sbjct: 1 MNKTELIERIAA-GSDLSKAAAKKALDATTEAIKAALVAGDKVQLVGFGTFSVNERPART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
P ++ I++ K V F+AG L + +
Sbjct: 60 GINPATKQKINIPAKKVAKFKAGAELNDAIK 90
>gi|147678826|ref|YP_001213041.1| nucleoid DNA-binding protein [Pelotomaculum thermopropionicum SI]
gi|146274923|dbj|BAF60672.1| bacterial nucleoid DNA-binding protein [Pelotomaculum
thermopropionicum SI]
Length = 92
Score = 79.0 bits (194), Expect = 2e-13, Method: Composition-based stats.
Identities = 26/90 (28%), Positives = 45/90 (50%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
MIK + + + ++ ++ + E +T A AN V +RGFG+F +R R+ R
Sbjct: 1 MIKRDFLEAVRAAGNYKTLAEAKRALDAVTEAITFASANHNTVRLRGFGAFIIRDRSPRA 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R + IS+ K V F+ GK L++ +
Sbjct: 61 GRDIRTGQPISIPAKKVIVFKPGKALRQAV 90
>gi|258513051|ref|YP_003189308.1| histone-like DNA-binding protein HU [Acetobacter pasteurianus IFO
3283-01]
gi|329113763|ref|ZP_08242536.1| DNA-binding protein HU [Acetobacter pomorum DM001]
gi|256634954|dbj|BAI00929.1| histone-like bacterial DNA-binding protein HU [Acetobacter
pasteurianus IFO 3283-01]
gi|256638009|dbj|BAI03977.1| histone-like bacterial DNA-binding protein HU [Acetobacter
pasteurianus IFO 3283-03]
gi|256641063|dbj|BAI07024.1| histone-like bacterial DNA-binding protein HU [Acetobacter
pasteurianus IFO 3283-07]
gi|256644118|dbj|BAI10072.1| histone-like bacterial DNA-binding protein HU [Acetobacter
pasteurianus IFO 3283-22]
gi|256647173|dbj|BAI13120.1| histone-like bacterial DNA-binding protein HU [Acetobacter
pasteurianus IFO 3283-26]
gi|256650226|dbj|BAI16166.1| histone-like bacterial DNA-binding protein HU [Acetobacter
pasteurianus IFO 3283-32]
gi|256653217|dbj|BAI19150.1| histone-like bacterial DNA-binding protein HU [Acetobacter
pasteurianus IFO 3283-01-42C]
gi|256656270|dbj|BAI22196.1| histone-like bacterial DNA-binding protein HU [Acetobacter
pasteurianus IFO 3283-12]
gi|326696919|gb|EGE48587.1| DNA-binding protein HU [Acetobacter pomorum DM001]
Length = 92
Score = 79.0 bits (194), Expect = 2e-13, Method: Composition-based stats.
Identities = 22/90 (24%), Positives = 35/90 (38%), Gaps = 1/90 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M LI I + +D + + + +T+A G I GFG F VR+ A R
Sbjct: 1 MNSQDLIERIVAAT-DIQKKDAKTALETVFAAITEAAVKGDDTTIAGFGKFVVRQTAERK 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P + + + K +K+ L
Sbjct: 60 GRNPQTGAELVIPASRKLAYTPAKAVKDAL 89
>gi|146307673|ref|YP_001188138.1| histone family protein DNA-binding protein [Pseudomonas mendocina
ymp]
gi|145575874|gb|ABP85406.1| histone family protein DNA-binding protein [Pseudomonas mendocina
ymp]
Length = 92
Score = 79.0 bits (194), Expect = 2e-13, Method: Composition-based stats.
Identities = 29/91 (31%), Positives = 42/91 (46%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
+ K LIG +A+ L V +++ L E ++ AL N G + + G G V +R AR
Sbjct: 3 ITKDQLIGDLAEA-VDLPKSTVRALLDQLGEIVSDALENDGEITLPGVGKLKVSERPART 61
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P K I + K V K L + LN
Sbjct: 62 GRNPQTGKAIEIAAKKVVKLVPAKALTDALN 92
>gi|311896283|dbj|BAJ28691.1| putative DNA-binding protein Hu [Kitasatospora setae KM-6054]
Length = 93
Score = 79.0 bits (194), Expect = 2e-13, Method: Composition-based stats.
Identities = 27/94 (28%), Positives = 44/94 (46%), Gaps = 2/94 (2%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGG-RVEIRGFGSFSVRKRAAR 59
M +S L+ +A++ ++ +D + ++ E + +A G +V I GF +F RAAR
Sbjct: 1 MNRSELVAALAER-AEVTRKDADAVLAAFAEITGEVVAKGDEKVTIPGFLTFERTLRAAR 59
Query: 60 LARAPLAQKVISVEEKMVPFFRAGKNLKERLNSP 93
AR P + I + E AG LKE
Sbjct: 60 TARNPQTGEPIQIAEGFSVKVSAGSKLKEAAKGK 93
>gi|291059654|gb|ADD72389.1| DNA-binding protein HU [Treponema pallidum subsp. pallidum str.
Chicago]
Length = 154
Score = 79.0 bits (194), Expect = 2e-13, Method: Composition-based stats.
Identities = 25/89 (28%), Positives = 45/89 (50%), Gaps = 1/89 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
+S ++ + + L+ + V ++V+ + +T AL G VE+R FG F R R A +
Sbjct: 56 TRSFVVDALCDE-VDLSRRHVARVVDSFVSVVTAALERGETVELRDFGVFESRVRKASVG 114
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERL 90
++ +V+S+ V FR K LK +
Sbjct: 115 KSIKTGEVVSIPSHCVVVFRPSKRLKSAV 143
>gi|325292554|ref|YP_004278418.1| integration host factor subunit alpha [Agrobacterium sp. H13-3]
gi|325060407|gb|ADY64098.1| integration host factor subunit alpha [Agrobacterium sp. H13-3]
Length = 112
Score = 79.0 bits (194), Expect = 2e-13, Method: Composition-based stats.
Identities = 20/89 (22%), Positives = 48/89 (53%), Gaps = 1/89 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
++ L ++ +K L+ + ++V +++E+ A+ G V++ F +F +R++ R+
Sbjct: 7 TRADLAESVFRK-VGLSRTESAELVETIIDEICNAITRGEVVKLSSFATFQIREKNERIG 65
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P + + + + V F+A LK+R+
Sbjct: 66 RNPKTGEEVPISPRRVMTFKASNVLKQRI 94
>gi|113461005|ref|YP_719072.1| integration host factor subunit alpha [Haemophilus somnus 129PT]
gi|170717573|ref|YP_001784659.1| integration host factor subunit alpha [Haemophilus somnus 2336]
gi|123031334|sp|Q0I3K4|IHFA_HAES1 RecName: Full=Integration host factor subunit alpha;
Short=IHF-alpha
gi|189044702|sp|B0UU60|IHFA_HAES2 RecName: Full=Integration host factor subunit alpha;
Short=IHF-alpha
gi|112823048|gb|ABI25137.1| integration host factor, alpha-subunit [Haemophilus somnus 129PT]
gi|168825702|gb|ACA31073.1| integration host factor, alpha subunit [Haemophilus somnus 2336]
Length = 97
Score = 78.7 bits (193), Expect = 2e-13, Method: Composition-based stats.
Identities = 27/95 (28%), Positives = 49/95 (51%), Gaps = 2/95 (2%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K L ++ ++ LN + +K+V E++ +L NG V++ GFG+F +R +++R
Sbjct: 4 TKIELKNSLIEQ--GLNKLEAKKVVEGFFEQIRVSLENGEDVKLSGFGNFELRDKSSRPG 61
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDST 96
R P + I V + V FR G+ L+ R+
Sbjct: 62 RNPKTGEAIPVSARRVVVFRPGQKLRSRVEKTKPK 96
>gi|27904545|ref|NP_777671.1| DNA-binding protein HU [Buchnera aphidicola str. Bp (Baizongia
pistaciae)]
gi|31340030|sp|Q89B22|DBH_BUCBP RecName: Full=DNA-binding protein HU
gi|27903942|gb|AAO26776.1| DNA-binding protein HU [Buchnera aphidicola str. Bp (Baizongia
pistaciae)]
Length = 92
Score = 78.7 bits (193), Expect = 2e-13, Method: Composition-based stats.
Identities = 32/91 (35%), Positives = 50/91 (54%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI I+KK+ L+ ++ I+ + L + Q+L +G V++ GFG+F V RAAR+
Sbjct: 1 MNKSELINIISKKS-NLSKIQIKNILEITLTAIIQSLKDGNSVQLVGFGTFKVNNRAARI 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + I + P F +GK K +
Sbjct: 60 GRNPQTGQTIHISATKTPVFISGKTFKTAIK 90
>gi|168699941|ref|ZP_02732218.1| probable DNA-binding protein HU [Gemmata obscuriglobus UQM 2246]
Length = 167
Score = 78.7 bits (193), Expect = 2e-13, Method: Composition-based stats.
Identities = 30/100 (30%), Positives = 48/100 (48%), Gaps = 8/100 (8%)
Query: 1 MIKSSLIGTIAKKNP--------KLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFS 52
M K ++ TI + L ++IV E + + L + GR+E+R FG F
Sbjct: 1 MTKKEIVKTICDRANKKNLIPKHNLTQLATKEIVQWTFEAIIETLVSEGRIELRNFGVFE 60
Query: 53 VRKRAARLARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
V++R R AR P + VE K V F+ GK ++E++
Sbjct: 61 VKQRKPRKARNPRTGAAVEVEAKNVVTFQPGKTMEEQVKK 100
>gi|86608376|ref|YP_477138.1| DNA-binding protein HU [Synechococcus sp. JA-2-3B'a(2-13)]
gi|86556918|gb|ABD01875.1| DNA-binding protein HU [Synechococcus sp. JA-2-3B'a(2-13)]
Length = 101
Score = 78.7 bits (193), Expect = 2e-13, Method: Composition-based stats.
Identities = 29/97 (29%), Positives = 53/97 (54%), Gaps = 8/97 (8%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALAN-------GGRVEIRGFGSFSV 53
M K+ L+ +A + + ++ E +++ LE + + +A+ G+V + GFGSF
Sbjct: 1 MNKAELVDAVAHR-ANVTKKEAEAVISAALEIIVEEVASRDENGEPKGKVILVGFGSFEA 59
Query: 54 RKRAARLARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
RKR R R P + + + E++VP F AGK+ +E +
Sbjct: 60 RKRKEREGRNPKTNQKMVIPERIVPTFAAGKSFREAV 96
>gi|295099668|emb|CBK88757.1| bacterial nucleoid protein Hbs [Eubacterium cylindroides T2-87]
Length = 94
Score = 78.7 bits (193), Expect = 2e-13, Method: Composition-based stats.
Identities = 27/90 (30%), Positives = 44/90 (48%), Gaps = 1/90 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K L + + L+ + E +N + EE+ L G V+I GFG FS+ +RAAR+
Sbjct: 6 NKKDLAAKLVAEY-DLSKKVAEGCINTVFEEIMNTLKEDGVVDIYGFGKFSLSERAARMG 64
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
P + I + F+A K+LK+ +
Sbjct: 65 LNPATGEKIEIPASKAVKFKASKSLKDAVK 94
>gi|160934238|ref|ZP_02081625.1| hypothetical protein CLOLEP_03109 [Clostridium leptum DSM 753]
gi|156866911|gb|EDO60283.1| hypothetical protein CLOLEP_03109 [Clostridium leptum DSM 753]
Length = 84
Score = 78.7 bits (193), Expect = 2e-13, Method: Composition-based stats.
Identities = 25/84 (29%), Positives = 46/84 (54%), Gaps = 1/84 (1%)
Query: 9 TIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLARAPLAQK 68
+A+K ++ +D + VN +++ + + LA +V++ GFG+F VR R+ R R P
Sbjct: 2 AVAEK-ANISKKDADTAVNAVIDTIVETLAKDEKVQLVGFGTFEVRSRSERQGRDPRTNS 60
Query: 69 VISVEEKMVPFFRAGKNLKERLNS 92
I++ VP F+ GK K ++
Sbjct: 61 PITIPASKVPAFKVGKAFKSAIDK 84
>gi|289549079|ref|YP_003474067.1| histone family protein DNA-binding protein [Thermocrinis albus
DSM 14484]
gi|289182696|gb|ADC89940.1| histone family protein DNA-binding protein [Thermocrinis albus
DSM 14484]
Length = 90
Score = 78.7 bits (193), Expect = 3e-13, Method: Composition-based stats.
Identities = 33/91 (36%), Positives = 49/91 (53%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ L+ IA K + ++ + + + + AL G RV I GFG F+VR+RAAR
Sbjct: 1 MTKAELVSAIA-KGAGITKKEADAALKAAVAAVADALKKGERVAIPGFGIFTVRQRAARK 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P VI++ + V FR K+L+E L
Sbjct: 60 GRNPRTGAVINIPARKVVVFRPAKDLREGLK 90
>gi|22536684|ref|NP_687535.1| DNA-binding protein HU [Streptococcus agalactiae 2603V/R]
gi|25010620|ref|NP_735015.1| DNA-binding protein HU [Streptococcus agalactiae NEM316]
gi|76786815|ref|YP_329238.1| DNA-binding protein HU [Streptococcus agalactiae A909]
gi|77405315|ref|ZP_00782411.1| DNA-binding protein HU [Streptococcus agalactiae H36B]
gi|77414015|ref|ZP_00790187.1| DNA-binding protein HU [Streptococcus agalactiae 515]
gi|22533525|gb|AAM99407.1|AE014215_1 DNA-binding protein HU [Streptococcus agalactiae 2603V/R]
gi|23094974|emb|CAD46195.1| HU like DNA-binding protein [Streptococcus agalactiae NEM316]
gi|76561872|gb|ABA44456.1| DNA-binding protein HU [Streptococcus agalactiae A909]
gi|77159941|gb|EAO71080.1| DNA-binding protein HU [Streptococcus agalactiae 515]
gi|77176110|gb|EAO78883.1| DNA-binding protein HU [Streptococcus agalactiae H36B]
gi|319744552|gb|EFV96905.1| DNA-binding protein HU [Streptococcus agalactiae ATCC 13813]
Length = 91
Score = 78.7 bits (193), Expect = 3e-13, Method: Composition-based stats.
Identities = 32/90 (35%), Positives = 48/90 (53%), Gaps = 1/90 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K LI +A+ +L +D V+ + + LA G +V++ GFG+F VR+RAAR
Sbjct: 3 NKQDLIAKVAEAT-ELTKKDSAAAVDAVFAAVADYLAEGEKVQLIGFGNFEVRERAARKG 61
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P I + VP F+AGK LK+ +
Sbjct: 62 RNPQTGAEIEIAASKVPAFKAGKALKDAVK 91
>gi|322385064|ref|ZP_08058714.1| DNA-binding protein HU [Streptococcus cristatus ATCC 51100]
gi|321270974|gb|EFX53884.1| DNA-binding protein HU [Streptococcus cristatus ATCC 51100]
Length = 91
Score = 78.7 bits (193), Expect = 3e-13, Method: Composition-based stats.
Identities = 33/90 (36%), Positives = 52/90 (57%), Gaps = 1/90 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K LI +A+ +L +D V+ + +T+ L+ G +V++ GFG+F VR+RAAR
Sbjct: 3 NKQDLIAKVAEAT-ELTKKDSAAAVDAVFAAVTEYLSKGEKVQLIGFGNFEVRERAARKG 61
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P K I++ VP F+AGK LK+ +
Sbjct: 62 RNPQTGKEITIAASKVPAFKAGKALKDAVK 91
>gi|296116566|ref|ZP_06835176.1| integration host factor, alpha subunit [Gluconacetobacter hansenii
ATCC 23769]
gi|295976778|gb|EFG83546.1| integration host factor, alpha subunit [Gluconacetobacter hansenii
ATCC 23769]
Length = 105
Score = 78.7 bits (193), Expect = 3e-13, Method: Composition-based stats.
Identities = 27/97 (27%), Positives = 48/97 (49%), Gaps = 1/97 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
+++L I + L+ + I+ +LE++ AL G V+I GFG+FSVRK+ R
Sbjct: 5 TRATLAEQIYSQ-VGLSRHESADILEHVLEKVAHALEAGDTVKISGFGTFSVRKKGRRTG 63
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDSTLS 98
R P + + + V FR + L+ +N ++
Sbjct: 64 RNPKTGVEVPILPRSVLVFRPSQLLRAHVNGDTGHMN 100
>gi|167042006|gb|ABZ06742.1| putative bacterial DNA-binding protein [uncultured marine
microorganism HF4000_141F21]
Length = 91
Score = 78.7 bits (193), Expect = 3e-13, Method: Composition-based stats.
Identities = 30/92 (32%), Positives = 44/92 (47%), Gaps = 1/92 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K L+ I+ + LN D E+ + + E + L N +V+I GFG++ V KR AR+
Sbjct: 1 MNKKQLVAKIS-SSMNLNKADAERTFDGITEIILNCLKNDEQVKIAGFGTYKVAKRKARV 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P + I + F K LKE N
Sbjct: 60 GRNPRTGEQIQIAASQKVKFLPAKALKEMFNK 91
>gi|15639243|ref|NP_218692.1| DNA-binding protein II [Treponema pallidum subsp. pallidum str.
Nichols]
gi|189025485|ref|YP_001933257.1| DNA-binding protein II [Treponema pallidum subsp. pallidum SS14]
gi|14194594|sp|O83278|DBH_TREPA RecName: Full=DNA-binding protein HU
gi|3322519|gb|AAC65236.1| DNA-binding protein II [Treponema pallidum subsp. pallidum str.
Nichols]
gi|189018060|gb|ACD70678.1| DNA-binding protein II [Treponema pallidum subsp. pallidum SS14]
Length = 105
Score = 78.7 bits (193), Expect = 3e-13, Method: Composition-based stats.
Identities = 25/89 (28%), Positives = 45/89 (50%), Gaps = 1/89 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
+S ++ + + L+ + V ++V+ + +T AL G VE+R FG F R R A +
Sbjct: 7 TRSFVVDALCDE-VDLSRRHVARVVDSFVSVVTAALERGETVELRDFGVFESRVRKASVG 65
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERL 90
++ +V+S+ V FR K LK +
Sbjct: 66 KSIKTGEVVSIPSHCVVVFRPSKRLKSAV 94
>gi|223986260|ref|ZP_03636274.1| hypothetical protein HOLDEFILI_03584 [Holdemania filiformis DSM
12042]
gi|223961755|gb|EEF66253.1| hypothetical protein HOLDEFILI_03584 [Holdemania filiformis DSM
12042]
Length = 94
Score = 78.7 bits (193), Expect = 3e-13, Method: Composition-based stats.
Identities = 29/90 (32%), Positives = 51/90 (56%), Gaps = 1/90 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K +L+ +A + + + + V+++ +E+T L +GG+V+I GFG F V+ RA R
Sbjct: 6 NKKALVDIVANQM-GMTKKAAGETVDLIFDEITSTLKDGGKVDISGFGKFEVKTRAERTG 64
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
P ++ I+V VP F+A K LK+ +
Sbjct: 65 INPATKEKITVPATKVPGFKAAKALKDAVK 94
>gi|329118112|ref|ZP_08246824.1| integration host factor subunit alpha [Neisseria bacilliformis
ATCC BAA-1200]
gi|327465772|gb|EGF12045.1| integration host factor subunit alpha [Neisseria bacilliformis
ATCC BAA-1200]
Length = 95
Score = 78.7 bits (193), Expect = 3e-13, Method: Composition-based stats.
Identities = 24/84 (28%), Positives = 42/84 (50%)
Query: 7 IGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLARAPLA 66
+ K K++ D ++IV + EE+ LA G ++I GFG+F +R + R R P
Sbjct: 2 ADILVDKVSKVSKNDAKEIVELFFEEIRTTLARGEEIKISGFGNFQLRDKPQRPGRNPKT 61
Query: 67 QKVISVEEKMVPFFRAGKNLKERL 90
+ + + + V F A + LK +
Sbjct: 62 GEEVPITARRVVTFHASQKLKGMV 85
>gi|325954785|ref|YP_004238445.1| histone family protein DNA-binding protein [Weeksella virosa DSM
16922]
gi|323437403|gb|ADX67867.1| histone family protein DNA-binding protein [Weeksella virosa DSM
16922]
Length = 97
Score = 78.7 bits (193), Expect = 3e-13, Method: Composition-based stats.
Identities = 27/93 (29%), Positives = 50/93 (53%), Gaps = 1/93 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ ++ I+ K L D ++++ ++E+ ++L NG V +RGFGSF+++KRA +
Sbjct: 1 MTKADIVNNISSKL-GLEKGDTQRVIEAFMDEVIKSLENGENVYLRGFGSFTIKKRAEKT 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSP 93
R I + VP F+ K+ E + +
Sbjct: 60 GRNITKGTSIIIPAHNVPGFKPAKSFVESVKAK 92
>gi|315419717|gb|ADU15828.1| histone-like protein [Streptococcus anginosus]
Length = 91
Score = 78.7 bits (193), Expect = 3e-13, Method: Composition-based stats.
Identities = 33/90 (36%), Positives = 51/90 (56%), Gaps = 1/90 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K LI +A+ +L +D V+ + +T+ LA G +V++ GFG+F VR+RAAR
Sbjct: 3 NKQDLIAKVAEAT-ELTKKDSAAAVDAVFAAVTEYLAAGEKVQLIGFGNFEVRERAARKG 61
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P I++ VP F+AGK LK+ +
Sbjct: 62 RNPQTGAEITIAASKVPTFKAGKALKDVIK 91
>gi|167042078|gb|ABZ06813.1| putative bacterial DNA-binding protein [uncultured marine
microorganism HF4000_141I21]
Length = 91
Score = 78.7 bits (193), Expect = 3e-13, Method: Composition-based stats.
Identities = 29/92 (31%), Positives = 44/92 (47%), Gaps = 1/92 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K L+ I+ + LN D E+ + + E + L + +V+I GFG++ V KR AR+
Sbjct: 1 MNKKQLVAKIS-SSMNLNKADAERTFDGITEIILNCLKSDEQVKIAGFGTYKVAKRKARV 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P + I + F K LKE N
Sbjct: 60 GRNPRTGEQIQIAASQKVKFLPAKALKEMFNK 91
>gi|309774624|ref|ZP_07669648.1| DNA-binding protein HU [Erysipelotrichaceae bacterium 3_1_53]
gi|308917524|gb|EFP63240.1| DNA-binding protein HU [Erysipelotrichaceae bacterium 3_1_53]
Length = 88
Score = 78.7 bits (193), Expect = 3e-13, Method: Composition-based stats.
Identities = 26/89 (29%), Positives = 47/89 (52%), Gaps = 1/89 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ +I IA K ++ + + I++ +E + +A +++I GFG+F R + R
Sbjct: 1 MNKNEIIREIAYKQ-GISSEVTKGIIDQFIELIGDKMAQREKIQIAGFGTFEARFVSERS 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKER 89
+R P + I + P F+ GK LKE+
Sbjct: 60 SRNPQTGEKIIIPGHFSPKFKPGKALKEK 88
>gi|313185143|gb|ADR50136.1| histone-like protein HBbu [Borrelia burgdorferi]
Length = 108
Score = 78.7 bits (193), Expect = 3e-13, Method: Composition-based stats.
Identities = 30/95 (31%), Positives = 49/95 (51%), Gaps = 5/95 (5%)
Query: 1 MIKSSLIGTIAKKNPK----LNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKR 56
+ KS ++ I+ L + + +++ EE+ L + +E R FG+F VRKR
Sbjct: 9 ITKSDIVDQISLNTKNNNLKLEKKYIRLVIDAFFEELKSNLCSNNVIEFRSFGTFEVRKR 68
Query: 57 AAR-LARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R AR P + + V + V +FR GK+LKER+
Sbjct: 69 KGRLNARNPQTGEYVKVLDHHVAYFRPGKDLKERV 103
>gi|163868458|ref|YP_001609667.1| integration host factor subunit alpha [Bartonella tribocorum CIP
105476]
gi|189044693|sp|A9IVB2|IHFA_BART1 RecName: Full=Integration host factor subunit alpha;
Short=IHF-alpha
gi|161018114|emb|CAK01672.1| integration host factor alpha subunit [Bartonella tribocorum CIP
105476]
Length = 107
Score = 78.7 bits (193), Expect = 3e-13, Method: Composition-based stats.
Identities = 23/89 (25%), Positives = 45/89 (50%), Gaps = 1/89 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
++ L + KK L++ + +V ++L+E+ +L G V++ F +F VR + R+
Sbjct: 7 TRADLASVVCKK-VGLSHTESAALVELVLDEICNSLVRGEAVKLSSFATFQVRSKNERIG 65
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P + + V F+A LK+R+
Sbjct: 66 RNPKTGVEAPIPPRRVVTFKAANILKQRI 94
>gi|313207044|ref|YP_004046221.1| histone family protein DNA-binding protein [Riemerella
anatipestifer DSM 15868]
gi|312446360|gb|ADQ82715.1| histone family protein DNA-binding protein [Riemerella
anatipestifer DSM 15868]
gi|315022562|gb|EFT35589.1| DNA-binding protein HU [Riemerella anatipestifer RA-YM]
gi|325335519|gb|ADZ11793.1| Bacterial nucleoid DNA-binding protein [Riemerella anatipestifer
RA-GD]
Length = 97
Score = 78.7 bits (193), Expect = 3e-13, Method: Composition-based stats.
Identities = 28/93 (30%), Positives = 49/93 (52%), Gaps = 1/93 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ L+ TI+ K + D +K++ ++E+ +L G V +RGFGSF ++ RAA+
Sbjct: 1 MTKAELVNTISNKL-GIEKNDTQKVIEAFMQEIRGSLYEGNNVYLRGFGSFIIKTRAAKT 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSP 93
R I + +P F+ K+ ER+ +
Sbjct: 60 GRNISKNTAIEIPAHNIPAFKPSKSFAERVKTK 92
>gi|301062187|ref|ZP_07202869.1| DNA-binding protein HU 1 [delta proteobacterium NaphS2]
gi|300443699|gb|EFK07782.1| DNA-binding protein HU 1 [delta proteobacterium NaphS2]
Length = 88
Score = 78.7 bits (193), Expect = 3e-13, Method: Composition-based stats.
Identities = 32/90 (35%), Positives = 45/90 (50%), Gaps = 2/90 (2%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K LI ++K ++ + V+ + +T AL +V I GFG+F V +R AR
Sbjct: 1 MNKGDLINEVSKVVS--TKKEAQAAVDCVFSSITDALKGKDKVTIIGFGTFKVEERKARK 58
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
P K I + K VP F AGK LKE +
Sbjct: 59 GINPQTGKSIDIAAKTVPKFVAGKALKESV 88
>gi|330994019|ref|ZP_08317949.1| Integration host factor subunit alpha [Gluconacetobacter sp.
SXCC-1]
gi|329758965|gb|EGG75479.1| Integration host factor subunit alpha [Gluconacetobacter sp.
SXCC-1]
Length = 109
Score = 78.7 bits (193), Expect = 3e-13, Method: Composition-based stats.
Identities = 25/90 (27%), Positives = 45/90 (50%), Gaps = 1/90 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
+++L I + L+ + I+ +LE M + L G ++I GFG+FSVR++ R
Sbjct: 7 TRATLAEQIYDQ-VGLSRHESADILEDILERMVRTLETGDTLKISGFGTFSVRQKGQRTG 65
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + + + V FR + L+ +N
Sbjct: 66 RNPKTGVEVPILPRSVLVFRPSQLLRAHVN 95
>gi|152965328|ref|YP_001361112.1| histone family protein DNA-binding protein [Kineococcus
radiotolerans SRS30216]
gi|151359845|gb|ABS02848.1| histone family protein DNA-binding protein [Kineococcus
radiotolerans SRS30216]
Length = 179
Score = 78.7 bits (193), Expect = 3e-13, Method: Composition-based stats.
Identities = 24/90 (26%), Positives = 43/90 (47%), Gaps = 2/90 (2%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ ++ + + + V ++E + +A G +V I GFG+F + R AR
Sbjct: 1 MNKAEMVDALEARLGG--RKQAVSAVEAVVELIQLTVAKGDKVAISGFGTFEKQARNART 58
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P + + +++ VP FR G KE +
Sbjct: 59 GRNPRTGEAVKIKKTSVPRFRPGTAFKEIV 88
>gi|51473371|ref|YP_067128.1| DNA-binding protein HU [Rickettsia typhi str. Wilmington]
gi|81692317|sp|Q68XJ6|DBH_RICTY RecName: Full=DNA-binding protein HU
gi|51459683|gb|AAU03646.1| DNA-binding protein HU [Rickettsia typhi str. Wilmington]
Length = 99
Score = 78.3 bits (192), Expect = 3e-13, Method: Composition-based stats.
Identities = 29/99 (29%), Positives = 47/99 (47%), Gaps = 8/99 (8%)
Query: 1 MIKSSLIGTIAKKNPK--------LNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFS 52
M K+ I + + L D EK +N++++ + A+ + V + GFGSF
Sbjct: 1 MNKTEFIAYMTEHCHNNKHAAHKTLTKADAEKALNLVIDSVISAIKSKHNVNLTGFGSFE 60
Query: 53 VRKRAARLARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
+ R AR R P ++++ P FRAG+ LKE N
Sbjct: 61 IHHRKAREGRNPKTGAKMTIDAYNQPTFRAGRKLKEACN 99
>gi|218297163|ref|ZP_03497825.1| histone family protein DNA-binding protein [Thermus aquaticus
Y51MC23]
gi|218242440|gb|EED08979.1| histone family protein DNA-binding protein [Thermus aquaticus
Y51MC23]
Length = 97
Score = 78.3 bits (192), Expect = 3e-13, Method: Composition-based stats.
Identities = 29/91 (31%), Positives = 50/91 (54%), Gaps = 1/91 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ L+ +A L +D + ++ L ++ +ALA G +V++ GFG+F VRKR AR
Sbjct: 8 TKADLVDQVAAA-AGLKKKDAKAAIDAFLAKVEEALAAGNKVQLTGFGTFEVRKRKARTG 66
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
P ++ I + P F+ GK LK+++
Sbjct: 67 VKPGTKEKIKIPATQYPAFKPGKALKDKVKK 97
>gi|46199286|ref|YP_004953.1| putative DNA binding protein [Thermus thermophilus HB27]
gi|55981318|ref|YP_144615.1| DNA-binding protein HU [Thermus thermophilus HB8]
gi|46196911|gb|AAS81326.1| putative DNA binding protein [Thermus thermophilus HB27]
gi|55772731|dbj|BAD71172.1| DNA-binding protein HU (DNA-binding protein II) [Thermus
thermophilus HB8]
Length = 97
Score = 78.3 bits (192), Expect = 3e-13, Method: Composition-based stats.
Identities = 33/91 (36%), Positives = 55/91 (60%), Gaps = 1/91 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ L+ +A+ L +DV+ +V+ LL ++ +ALANG +V++ GFG+F VRKR AR
Sbjct: 8 TKADLVDQVAQAT-GLKKKDVKAMVDALLAKVEEALANGSKVQLTGFGTFEVRKRKARTG 66
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
P ++ I + P F+ GK LK+++
Sbjct: 67 VKPGTKEKIKIPATQYPAFKPGKALKDKVKK 97
>gi|226365961|ref|YP_002783744.1| DNA-binding protein HU [Rhodococcus opacus B4]
gi|226244451|dbj|BAH54799.1| putative DNA-binding protein HU [Rhodococcus opacus B4]
Length = 231
Score = 78.3 bits (192), Expect = 3e-13, Method: Composition-based stats.
Identities = 29/90 (32%), Positives = 47/90 (52%), Gaps = 1/90 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI + +K + + + V +++ + +A+ G V I GFG F R+RAAR+
Sbjct: 1 MNKAELIDVLTEKL-GTDRRTATEAVEHVVDTIVRAVHRGDSVTITGFGVFEQRRRAARV 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
AR P + + V+ VP FR G K +
Sbjct: 60 ARNPRTGETVKVKPTSVPAFRPGAQFKAVI 89
>gi|145593811|ref|YP_001158108.1| histone family protein DNA-binding protein [Salinispora tropica
CNB-440]
gi|145303148|gb|ABP53730.1| histone family protein DNA-binding protein [Salinispora tropica
CNB-440]
Length = 237
Score = 78.3 bits (192), Expect = 3e-13, Method: Composition-based stats.
Identities = 30/89 (33%), Positives = 46/89 (51%), Gaps = 2/89 (2%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ LI T+A + + ++ +L E+ A+ G +V I GFG+F R R AR A
Sbjct: 19 NKAELIETLAVRLGD--RKTASAALDAVLTEVQAAVTKGEKVSITGFGAFEKRVRGARTA 76
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P + + V++ VP FR G KE +
Sbjct: 77 RNPRTGEAVKVKKTSVPTFRPGTGFKEMV 105
>gi|111023460|ref|YP_706432.1| DNA-binding protein [Rhodococcus jostii RHA1]
gi|110822990|gb|ABG98274.1| DNA-binding protein [Rhodococcus jostii RHA1]
Length = 230
Score = 78.3 bits (192), Expect = 3e-13, Method: Composition-based stats.
Identities = 29/90 (32%), Positives = 47/90 (52%), Gaps = 1/90 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI + +K + + + V +++ + +A+ G V I GFG F R+RAAR+
Sbjct: 1 MNKAELIDVLTEKL-GTDRRTATEAVEHVVDTIVRAVHRGDSVTITGFGVFEQRRRAARV 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
AR P + + V+ VP FR G K +
Sbjct: 60 ARNPRTGETVKVKPTSVPAFRPGAQFKAVI 89
>gi|62296616|sp|P19436|DBH_THET8 RecName: Full=DNA-binding protein HU; AltName: Full=DNA-binding
protein II; AltName: Full=TL29
Length = 96
Score = 78.3 bits (192), Expect = 3e-13, Method: Composition-based stats.
Identities = 33/91 (36%), Positives = 55/91 (60%), Gaps = 1/91 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ L+ +A+ L +DV+ +V+ LL ++ +ALANG +V++ GFG+F VRKR AR
Sbjct: 7 TKADLVDQVAQAT-GLKKKDVKAMVDALLAKVEEALANGSKVQLTGFGTFEVRKRKARTG 65
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
P ++ I + P F+ GK LK+++
Sbjct: 66 VKPGTKEKIKIPATQYPAFKPGKALKDKVKK 96
>gi|89145728|gb|ABD62053.1| Hbb [Borrelia californiensis]
gi|89145730|gb|ABD62054.1| Hbb [Borrelia californiensis]
gi|89145732|gb|ABD62055.1| Hbb [Borrelia californiensis]
Length = 108
Score = 78.3 bits (192), Expect = 3e-13, Method: Composition-based stats.
Identities = 33/94 (35%), Positives = 50/94 (53%), Gaps = 5/94 (5%)
Query: 2 IKSSLIGTIA----KKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRA 57
KS ++ I+ N KL + + +++ EE+ L + VE R FG+F VRKR
Sbjct: 10 TKSDIVDQISLNIRNSNLKLEKKYIRLVIDAFFEELKSNLCSNNVVEFRSFGTFEVRKRK 69
Query: 58 AR-LARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R AR P + + V + V +FR GK+LKER+
Sbjct: 70 GRLNARNPQTGEYVRVLDHHVAYFRPGKDLKERV 103
>gi|327402190|ref|YP_004343028.1| histone family protein DNA-binding protein [Fluviicola taffensis
DSM 16823]
gi|327317698|gb|AEA42190.1| histone family protein DNA-binding protein [Fluviicola taffensis
DSM 16823]
Length = 96
Score = 78.3 bits (192), Expect = 3e-13, Method: Composition-based stats.
Identities = 25/92 (27%), Positives = 44/92 (47%), Gaps = 1/92 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ ++ IA++ L + +K V + + +L G V +RGFGSF V++RA +
Sbjct: 1 MTKADIVAEIAEET-GLERNEAQKAVEAFMTSIKTSLTKGQNVYLRGFGSFIVKERAEKT 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R I + +P F+ K E + +
Sbjct: 60 GRNISKNTTIIIPAHNIPSFKPAKTFVEEVKN 91
>gi|291302449|ref|YP_003513727.1| histone family protein DNA-binding protein [Stackebrandtia
nassauensis DSM 44728]
gi|290571669|gb|ADD44634.1| histone family protein DNA-binding protein [Stackebrandtia
nassauensis DSM 44728]
Length = 185
Score = 78.3 bits (192), Expect = 3e-13, Method: Composition-based stats.
Identities = 30/95 (31%), Positives = 51/95 (53%), Gaps = 2/95 (2%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ I + + + K ++ +LEE+ +A++ G +V GFG F R+RAAR+
Sbjct: 1 MNKAEFIDALVEHLGD--RKTALKALDAMLEEIQRAVSKGEKVSFAGFGVFEKRQRAARM 58
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDS 95
AR P + + V++ +VP FR G+ KE +
Sbjct: 59 ARNPRTGEAVRVKKTVVPAFRPGQGFKELVTGEKK 93
>gi|323137735|ref|ZP_08072811.1| histone family protein DNA-binding protein [Methylocystis sp. ATCC
49242]
gi|322397032|gb|EFX99557.1| histone family protein DNA-binding protein [Methylocystis sp. ATCC
49242]
Length = 128
Score = 78.3 bits (192), Expect = 3e-13, Method: Composition-based stats.
Identities = 25/90 (27%), Positives = 42/90 (46%), Gaps = 1/90 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
++ L I K+ L D V M+LEE+ + + V++ FG+F VR + RL
Sbjct: 26 TRADLADAIHKRL-GLPRADSANYVEMVLEEIFDRIVSREDVKLSSFGAFLVRSKKERLG 84
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + ++V F+ L+ R+N
Sbjct: 85 RNPKTGAGAKITARLVVTFKPSNILRSRIN 114
>gi|19912729|dbj|BAB88647.1| histone-like protein [Streptococcus intermedius]
gi|187936837|dbj|BAG32216.1| histone-like DNA binding protein [Streptococcus intermedius]
Length = 91
Score = 78.3 bits (192), Expect = 3e-13, Method: Composition-based stats.
Identities = 33/90 (36%), Positives = 52/90 (57%), Gaps = 1/90 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K LI +A+ +L +D V+ + +T+ L+ G +V++ GFG+F VR+RAAR
Sbjct: 3 NKQDLIAKVAEAT-ELTKKDSAAAVDAVFAAVTEFLSAGEKVQLIGFGNFEVRERAARKG 61
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P K I++ VP F+AGK LK+ +
Sbjct: 62 RNPQTGKEITIAASKVPAFKAGKALKDAVK 91
>gi|327250473|gb|EGE62183.1| DNA-binding protein HU-alpha [Escherichia coli STEC_7v]
Length = 90
Score = 78.3 bits (192), Expect = 3e-13, Method: Composition-based stats.
Identities = 28/83 (33%), Positives = 43/83 (51%), Gaps = 1/83 (1%)
Query: 9 TIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLARAPLAQK 68
IA+K +L+ + + L +T++L G V++ GFG+F V RA R R P K
Sbjct: 9 QIAEK-AELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTGRNPQTGK 67
Query: 69 VISVEEKMVPFFRAGKNLKERLN 91
I + VP F +GK LK+ +
Sbjct: 68 EIKIAAANVPAFVSGKALKDAVK 90
>gi|104784354|ref|YP_610852.1| DNA-binding protein HU-alpha [Pseudomonas entomophila L48]
gi|95113341|emb|CAK18069.1| DNA-binding protein HU-alpha [Pseudomonas entomophila L48]
Length = 98
Score = 78.3 bits (192), Expect = 3e-13, Method: Composition-based stats.
Identities = 29/95 (30%), Positives = 48/95 (50%), Gaps = 2/95 (2%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K L IA+K L + ++N +L+ +T AL V + GFG+F R R AR
Sbjct: 1 MRKPELAAVIAEK-ADLTKEKANIVLNAILDSITGALDK-DTVTLVGFGTFEKRHRGART 58
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDS 95
+ P + + ++ F+ GKNL++ +N+P
Sbjct: 59 GKNPQTGQPVKIKASNTVAFKPGKNLRDSVNAPAK 93
>gi|255009783|ref|ZP_05281909.1| integration host factor, beta subunit [Bacteroides fragilis
3_1_12]
gi|313147572|ref|ZP_07809765.1| DNA-binding protein HU [Bacteroides fragilis 3_1_12]
gi|313136339|gb|EFR53699.1| DNA-binding protein HU [Bacteroides fragilis 3_1_12]
Length = 97
Score = 78.3 bits (192), Expect = 3e-13, Method: Composition-based stats.
Identities = 34/92 (36%), Positives = 53/92 (57%), Gaps = 1/92 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K LI TIA++ ++N DVE +N + + +ANG + IRGFG+ S ++R A++
Sbjct: 1 MTKQELINTIAER-AEINKIDVEHAINTAFDVAKETIANGDSIFIRGFGTLSPKRRQAKV 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
AR A + V E +VP F+ K K ++N
Sbjct: 60 ARNITAGTSVVVPETIVPHFKPCKAFKGQVNE 91
>gi|188996798|ref|YP_001931049.1| histone family protein DNA-binding protein [Sulfurihydrogenibium
sp. YO3AOP1]
gi|188931865|gb|ACD66495.1| histone family protein DNA-binding protein [Sulfurihydrogenibium
sp. YO3AOP1]
Length = 92
Score = 78.3 bits (192), Expect = 3e-13, Method: Composition-based stats.
Identities = 37/93 (39%), Positives = 50/93 (53%), Gaps = 1/93 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI A+K + E+ VN +E + AL+ G RV I G G F+V++R AR
Sbjct: 1 MTKSELISKTAEK-AGITKAAAERAVNAAIEAVVGALSKGERVAIPGLGVFNVKQRKARK 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSP 93
R P K I++ + V F A K+LKE LN
Sbjct: 60 GRNPRTGKEITIPARKVVAFTAAKSLKEGLNKK 92
>gi|42524742|ref|NP_970122.1| putative DNA-binding protein HU-beta [Bdellovibrio bacteriovorus
HD100]
gi|39576952|emb|CAE78181.1| putative DNA-binding protein HU-beta [Bdellovibrio bacteriovorus
HD100]
Length = 90
Score = 78.3 bits (192), Expect = 3e-13, Method: Composition-based stats.
Identities = 30/91 (32%), Positives = 47/91 (51%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI IA + K++ E I++ +E + +++ G V++ GFG+F+ KR AR
Sbjct: 1 MNKAQLIEKIATET-KVSKAQAEAILDCAVENIKKSVKKGDDVKLVGFGTFTKAKRKART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P K I + P FRAG K +
Sbjct: 60 GRNPQTGKAIKIPAAWAPKFRAGAEFKAMVK 90
>gi|325972610|ref|YP_004248801.1| histone family protein DNA-binding protein [Spirochaeta sp.
Buddy]
gi|324027848|gb|ADY14607.1| histone family protein DNA-binding protein [Spirochaeta sp.
Buddy]
Length = 108
Score = 78.3 bits (192), Expect = 3e-13, Method: Composition-based stats.
Identities = 33/90 (36%), Positives = 53/90 (58%), Gaps = 2/90 (2%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAAR-L 60
K+++I ++ +K+ LN D+ +I++ EE+ L N +E+RGFG+F VR R R
Sbjct: 7 TKAAIIESLHEKH-GLNRADIHQIIDEFFEEVKDGLKNDQVIELRGFGTFEVRTRKGREK 65
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
AR P +++VE V FR GK LK+ +
Sbjct: 66 ARNPKTGAIVAVETHGVAIFRPGKELKDFV 95
>gi|209548801|ref|YP_002280718.1| integration host factor subunit alpha [Rhizobium leguminosarum
bv. trifolii WSM2304]
gi|226709743|sp|B5ZXV9|IHFA_RHILW RecName: Full=Integration host factor subunit alpha;
Short=IHF-alpha
gi|209534557|gb|ACI54492.1| integration host factor, alpha subunit [Rhizobium leguminosarum
bv. trifolii WSM2304]
Length = 112
Score = 78.3 bits (192), Expect = 3e-13, Method: Composition-based stats.
Identities = 21/89 (23%), Positives = 46/89 (51%), Gaps = 1/89 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
++ L ++ +K L+ + ++V +++E+ A+ G V++ F +F VR + R+
Sbjct: 7 TRADLAESVFRK-VGLSRTESAELVETVIDEVCNAIVRGETVKLSSFATFQVRDKNERIG 65
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P + + + + V F+A LK R+
Sbjct: 66 RNPKTGEEVPISPRRVMTFKASNVLKTRI 94
>gi|296129746|ref|YP_003636996.1| histone family protein DNA-binding protein [Cellulomonas
flavigena DSM 20109]
gi|296021561|gb|ADG74797.1| histone family protein DNA-binding protein [Cellulomonas
flavigena DSM 20109]
Length = 93
Score = 78.3 bits (192), Expect = 3e-13, Method: Composition-based stats.
Identities = 25/89 (28%), Positives = 41/89 (46%), Gaps = 1/89 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
++ L+ +A+K L D +K + L E + + LA GG V I GF + + +RAAR
Sbjct: 4 NRTELVQAVAEK-AGLTNVDADKALKALQEVVVEQLAAGGSVSIPGFLAVARAERAARTG 62
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERL 90
P + + + AG LK +
Sbjct: 63 VNPQTGEKLEIPAGHRVKITAGSALKRAV 91
>gi|118465605|ref|YP_883003.1| DNA-binding protein HU [Mycobacterium avium 104]
gi|118166892|gb|ABK67789.1| DNA-binding protein HU [Mycobacterium avium 104]
Length = 217
Score = 78.3 bits (192), Expect = 3e-13, Method: Composition-based stats.
Identities = 29/90 (32%), Positives = 46/90 (51%), Gaps = 1/90 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI + +K + + V +++ + +A+ G V I GFG F R+RAAR+
Sbjct: 6 MNKAELIDVLTQKL-NTDRRQATAAVENVVDTIVRAVHKGDSVTITGFGVFEQRRRAARV 64
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
AR P + + V+ VP FR G K +
Sbjct: 65 ARNPRTGETVKVKPTSVPAFRPGAQFKAVV 94
>gi|224531945|ref|ZP_03672577.1| DNA-binding protein HU [Borrelia valaisiana VS116]
gi|1280583|gb|AAC73090.1| histone-like protein HBbu [Borrelia burgdorferi]
gi|1280585|gb|AAC73091.1| histone-like protein HBbu [Borrelia burgdorferi]
gi|89145740|gb|ABD62059.1| Hbb [Borrelia valaisiana]
gi|89145742|gb|ABD62060.1| Hbb [Borrelia valaisiana]
gi|186966720|gb|ACC96221.1| histone-like protein HBbu [Borrelia sp. QSDS4]
gi|186966722|gb|ACC96222.1| histone-like protein HBbu [Borrelia sp. QTMP2]
gi|186966724|gb|ACC96223.1| histone-like protein HBbu [Borrelia sp. QSYSP4]
gi|186966726|gb|ACC96224.1| histone-like protein HBbu [Borrelia sp. QSYSP3]
gi|186966728|gb|ACC96225.1| histone-like protein HBbu [Borrelia sp. QLZSP1]
gi|224511410|gb|EEF81816.1| DNA-binding protein HU [Borrelia valaisiana VS116]
gi|313185123|gb|ADR50126.1| histone-like protein HBbu [Borrelia burgdorferi]
gi|313185125|gb|ADR50127.1| histone-like protein HBbu [Borrelia burgdorferi]
gi|313185129|gb|ADR50129.1| histone-like protein HBbu [Borrelia burgdorferi]
gi|313185131|gb|ADR50130.1| histone-like protein HBbu [Borrelia burgdorferi]
gi|313185133|gb|ADR50131.1| histone-like protein HBbu [Borrelia burgdorferi]
gi|313185135|gb|ADR50132.1| histone-like protein HBbu [Borrelia burgdorferi]
gi|313185137|gb|ADR50133.1| histone-like protein HBbu [Borrelia burgdorferi]
gi|313185139|gb|ADR50134.1| histone-like protein HBbu [Borrelia burgdorferi]
gi|313185141|gb|ADR50135.1| histone-like protein HBbu [Borrelia burgdorferi]
gi|313185147|gb|ADR50138.1| histone-like protein HBbu [Borrelia burgdorferi]
gi|313185149|gb|ADR50139.1| histone-like protein HBbu [Borrelia burgdorferi]
Length = 108
Score = 78.3 bits (192), Expect = 3e-13, Method: Composition-based stats.
Identities = 32/95 (33%), Positives = 51/95 (53%), Gaps = 5/95 (5%)
Query: 1 MIKSSLIGTIA----KKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKR 56
+ KS ++ I+ N KL + + +++ EE+ L + +E R FG+F VRKR
Sbjct: 9 ITKSDIVDQISLNIRNNNLKLEKKYIRLVIDAFFEELKSNLCSNNVIEFRSFGTFEVRKR 68
Query: 57 AAR-LARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R AR P + + V + V +FR GK+LKER+
Sbjct: 69 KGRLNARNPQTGEYVKVLDHHVAYFRPGKDLKERV 103
>gi|115372447|ref|ZP_01459756.1| non-specific DNA-binding protein [Stigmatella aurantiaca DW4/3-1]
gi|310819508|ref|YP_003951866.1| DNA-binding protein HU [Stigmatella aurantiaca DW4/3-1]
gi|115370660|gb|EAU69586.1| non-specific DNA-binding protein [Stigmatella aurantiaca DW4/3-1]
gi|309392580|gb|ADO70039.1| DNA-binding protein HU [Stigmatella aurantiaca DW4/3-1]
Length = 89
Score = 78.3 bits (192), Expect = 3e-13, Method: Composition-based stats.
Identities = 25/90 (27%), Positives = 46/90 (51%), Gaps = 1/90 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ L+ +A ++ L + +I++++ + +A+ R GFG++SVR R AR
Sbjct: 1 MTKAELVEVVAAQSR-LTKKSAAEILDIVFSNIGKAVKRDARFSYPGFGTWSVRSRKARK 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P +++ ++ FR K LK L
Sbjct: 60 IRNPQTNEMMKLKASKTIGFRPAKELKNSL 89
>gi|56552018|ref|YP_162857.1| integration host factor subunit alpha [Zymomonas mobilis subsp.
mobilis ZM4]
gi|241761906|ref|ZP_04759991.1| integration host factor, alpha subunit [Zymomonas mobilis subsp.
mobilis ATCC 10988]
gi|260752446|ref|YP_003225339.1| integration host factor, subunit alpha [Zymomonas mobilis subsp.
mobilis NCIMB 11163]
gi|5834289|gb|AAD53893.1|AF176314_3 HimA [Zymomonas mobilis subsp. mobilis ZM4]
gi|56543592|gb|AAV89746.1| integration host factor, alpha subunit [Zymomonas mobilis subsp.
mobilis ZM4]
gi|241373586|gb|EER63158.1| integration host factor, alpha subunit [Zymomonas mobilis subsp.
mobilis ATCC 10988]
gi|258551809|gb|ACV74755.1| integration host factor, alpha subunit [Zymomonas mobilis subsp.
mobilis NCIMB 11163]
Length = 113
Score = 78.3 bits (192), Expect = 3e-13, Method: Composition-based stats.
Identities = 24/89 (26%), Positives = 46/89 (51%), Gaps = 1/89 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
++ + + + L+ D K++ +L +T AL G V+I GFGSF +R + R+
Sbjct: 22 TRADITDMLYHE-VGLSRADSAKMIEQMLGHITDALKKGENVKISGFGSFILRDKNERVG 80
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P + + + V FRA + +++R+
Sbjct: 81 RNPKTGIEVPIAPRRVLTFRASQLMRQRI 109
>gi|320008332|gb|ADW03182.1| histone family protein DNA-binding protein [Streptomyces
flavogriseus ATCC 33331]
Length = 218
Score = 78.3 bits (192), Expect = 4e-13, Method: Composition-based stats.
Identities = 32/95 (33%), Positives = 50/95 (52%), Gaps = 2/95 (2%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ L+ IA K Q V+++L+ + +A+ G RV + GFGSF R AR
Sbjct: 1 MNKAQLVEAIADKVGG--RQQAADAVDVVLDAIVRAVVAGDRVSVTGFGSFEKVDRPARY 58
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDS 95
AR P + + V++ VP FRAG+ K+ ++
Sbjct: 59 ARNPQTGERVRVKKTSVPRFRAGQGFKDLVSGSKK 93
>gi|315419707|gb|ADU15823.1| histone-like protein [Streptococcus parasanguinis]
Length = 91
Score = 78.3 bits (192), Expect = 4e-13, Method: Composition-based stats.
Identities = 32/90 (35%), Positives = 51/90 (56%), Gaps = 1/90 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K LI +A+ +L +D V+ + +++ L+ G +V++ GFG+F VR+RAAR
Sbjct: 3 NKQDLIAKVAEAT-ELTKKDSAAAVDAVFAAVSEYLSKGEKVQLIGFGNFEVRERAARKG 61
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P K I + VP F+AGK LK+ +
Sbjct: 62 RNPQTGKEIEIAASKVPAFKAGKALKDAVK 91
>gi|218682312|ref|ZP_03529913.1| integration host factor subunit alpha [Rhizobium etli CIAT 894]
Length = 112
Score = 78.3 bits (192), Expect = 4e-13, Method: Composition-based stats.
Identities = 21/89 (23%), Positives = 46/89 (51%), Gaps = 1/89 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
++ L ++ +K L+ + ++V +++E+ A+ G V++ F +F VR + R+
Sbjct: 7 TRADLAESVFRK-VGLSRTESAELVETVIDEVCNAIVRGETVKLSSFATFQVRDKNERIG 65
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P + + + + V F+A LK R+
Sbjct: 66 RNPKTGEEVPISPRRVMTFKASNVLKTRI 94
>gi|317484122|ref|ZP_07943052.1| bacterial DNA-binding protein [Bilophila wadsworthia 3_1_6]
gi|316924626|gb|EFV45782.1| bacterial DNA-binding protein [Bilophila wadsworthia 3_1_6]
Length = 97
Score = 78.3 bits (192), Expect = 4e-13, Method: Composition-based stats.
Identities = 27/96 (28%), Positives = 40/96 (41%), Gaps = 5/96 (5%)
Query: 1 MIKSSLIGTIAK--KNPK---LNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRK 55
M K LI + +N + D+ ++ L E L GG V + G G +R+
Sbjct: 1 MTKRELIEKALETARNSHERAMTLADMGAALDSLCEVAAAELLGGGEVSLPGLGKIKMRE 60
Query: 56 RAARLARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
AAR R P + + + F GK+LKE L
Sbjct: 61 TAAREGRNPRTGESLHIPAGKKVVFVPGKDLKEALK 96
>gi|162148845|ref|YP_001603306.1| integration host factor alpha-subunit [Gluconacetobacter
diazotrophicus PAl 5]
gi|209545407|ref|YP_002277636.1| integration host factor subunit alpha [Gluconacetobacter
diazotrophicus PAl 5]
gi|161787422|emb|CAP57017.1| putative integration host factor alpha-subunit [Gluconacetobacter
diazotrophicus PAl 5]
gi|209533084|gb|ACI53021.1| integration host factor, alpha subunit [Gluconacetobacter
diazotrophicus PAl 5]
Length = 105
Score = 78.3 bits (192), Expect = 4e-13, Method: Composition-based stats.
Identities = 26/90 (28%), Positives = 47/90 (52%), Gaps = 1/90 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
++SL I + L+ + ++ +LE + + L +G V+I GFG+FSVR++ R
Sbjct: 5 TRASLAEHIYSQ-VGLSRNESADLLEHVLERVAKELESGNTVKISGFGTFSVRQKGRRTG 63
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + + + V FR + L+ R+N
Sbjct: 64 RNPKTGVEVPILPRSVLVFRPSQLLRARVN 93
>gi|86749688|ref|YP_486184.1| histone-like DNA-binding protein [Rhodopseudomonas palustris HaA2]
gi|86572716|gb|ABD07273.1| Histone-like DNA-binding protein [Rhodopseudomonas palustris HaA2]
Length = 103
Score = 78.3 bits (192), Expect = 4e-13, Method: Composition-based stats.
Identities = 30/85 (35%), Positives = 46/85 (54%), Gaps = 1/85 (1%)
Query: 6 LIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLARAPL 65
L +A+++ +L+ + E I+ L+ +T+ L G R+ I G G VRKRAAR R P
Sbjct: 20 LAAALAEEH-ELSKKQTEAILGDLVGRITKHLKKGERIRIVGLGILQVRKRAARTGRNPA 78
Query: 66 AQKVISVEEKMVPFFRAGKNLKERL 90
+ I ++ FRA K LKE +
Sbjct: 79 TGETIQIKASKKVAFRAAKELKEAI 103
>gi|169832956|ref|YP_001694534.1| DNA-binding protein HU 1 (DNA-binding protein II) (HB)
[Streptococcus pneumoniae Hungary19A-6]
gi|168995458|gb|ACA36070.1| DNA-binding protein HU 1 (DNA-binding protein II) (HB)
[Streptococcus pneumoniae Hungary19A-6]
Length = 91
Score = 78.3 bits (192), Expect = 4e-13, Method: Composition-based stats.
Identities = 31/90 (34%), Positives = 48/90 (53%), Gaps = 1/90 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K LI +A+ +L +D V + + LA G +V++ GFG+F VR+RA R
Sbjct: 3 NKQDLIAKVAEAT-ELTKKDSAAAVEAVFVAVADYLAAGEKVQLIGFGNFEVRERAERKG 61
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P K +++ VP F+AGK LK+ +
Sbjct: 62 RNPQTGKEMTIAASKVPAFKAGKALKDAVK 91
>gi|15900980|ref|NP_345584.1| DNA-binding protein HU [Streptococcus pneumoniae TIGR4]
gi|15903064|ref|NP_358614.1| DNA-binding protein HU [Streptococcus pneumoniae R6]
gi|111658012|ref|ZP_01408716.1| hypothetical protein SpneT_02000809 [Streptococcus pneumoniae
TIGR4]
gi|116516205|ref|YP_816472.1| DNA-binding protein HU [Streptococcus pneumoniae D39]
gi|148985086|ref|ZP_01818329.1| DNA-binding protein HU [Streptococcus pneumoniae SP3-BS71]
gi|148989157|ref|ZP_01820547.1| DNA-binding protein HU [Streptococcus pneumoniae SP6-BS73]
gi|148994562|ref|ZP_01823721.1| DNA-binding protein HU [Streptococcus pneumoniae SP9-BS68]
gi|148998383|ref|ZP_01825825.1| DNA-binding protein HU [Streptococcus pneumoniae SP11-BS70]
gi|149003768|ref|ZP_01828600.1| DNA-binding protein HU [Streptococcus pneumoniae SP14-BS69]
gi|149006210|ref|ZP_01829922.1| DNA-binding protein HU [Streptococcus pneumoniae SP18-BS74]
gi|149012891|ref|ZP_01833804.1| DNA-binding protein HU [Streptococcus pneumoniae SP19-BS75]
gi|149024915|ref|ZP_01836316.1| DNA-binding protein HU [Streptococcus pneumoniae SP23-BS72]
gi|168483191|ref|ZP_02708143.1| DNA-binding protein HU 1 (DNA-binding protein II) (HB)
[Streptococcus pneumoniae CDC1873-00]
gi|168486472|ref|ZP_02710980.1| DNA-binding protein HU 1 (DNA-binding protein II) (HB)
[Streptococcus pneumoniae CDC1087-00]
gi|168488958|ref|ZP_02713157.1| DNA-binding protein HU 1 (DNA-binding protein II) (HB)
[Streptococcus pneumoniae SP195]
gi|168492008|ref|ZP_02716151.1| DNA-binding protein HU 1 (DNA-binding protein II) (HB)
[Streptococcus pneumoniae CDC0288-04]
gi|168493057|ref|ZP_02717200.1| DNA-binding protein HU 1 (DNA-binding protein II) (HB)
[Streptococcus pneumoniae CDC3059-06]
gi|168576162|ref|ZP_02722056.1| DNA-binding protein HU 1 (DNA-binding protein II) (HB)
[Streptococcus pneumoniae MLV-016]
gi|182684138|ref|YP_001835885.1| DNA-binding protein HU [Streptococcus pneumoniae CGSP14]
gi|194397873|ref|YP_002037741.1| DNA-binding protein HU [Streptococcus pneumoniae G54]
gi|221231850|ref|YP_002511002.1| DNA-binding protein HU [Streptococcus pneumoniae ATCC 700669]
gi|225854609|ref|YP_002736121.1| DNA-binding protein HU 1 (DNA-binding protein II) (HB)
[Streptococcus pneumoniae JJA]
gi|225856753|ref|YP_002738264.1| DNA-binding protein HU 1 (DNA-binding protein II) (HB)
[Streptococcus pneumoniae P1031]
gi|225858923|ref|YP_002740433.1| DNA-binding protein HU 1 (DNA-binding protein II) (HB)
[Streptococcus pneumoniae 70585]
gi|225861076|ref|YP_002742585.1| DNA-binding protein HU 1 (DNA-binding protein II) (HB)
[Streptococcus pneumoniae Taiwan19F-14]
gi|237650781|ref|ZP_04525033.1| DNA-binding protein HU 1 (DNA-binding protein II) (HB)
[Streptococcus pneumoniae CCRI 1974]
gi|237822369|ref|ZP_04598214.1| DNA-binding protein HU 1 (DNA-binding protein II) (HB)
[Streptococcus pneumoniae CCRI 1974M2]
gi|298229872|ref|ZP_06963553.1| DNA-binding protein HU [Streptococcus pneumoniae str. Canada
MDR_19F]
gi|298254158|ref|ZP_06977744.1| DNA-binding protein HU [Streptococcus pneumoniae str. Canada
MDR_19A]
gi|298502870|ref|YP_003724810.1| DNA-binding protein HU [Streptococcus pneumoniae TCH8431/19A]
gi|303254179|ref|ZP_07340291.1| DNA-binding protein HU [Streptococcus pneumoniae BS455]
gi|303259776|ref|ZP_07345751.1| DNA-binding protein HU [Streptococcus pneumoniae SP-BS293]
gi|303262951|ref|ZP_07348886.1| DNA-binding protein HU [Streptococcus pneumoniae SP14-BS292]
gi|303264913|ref|ZP_07350829.1| DNA-binding protein HU [Streptococcus pneumoniae BS397]
gi|303266894|ref|ZP_07352772.1| DNA-binding protein HU [Streptococcus pneumoniae BS457]
gi|303268930|ref|ZP_07354715.1| DNA-binding protein HU [Streptococcus pneumoniae BS458]
gi|307067705|ref|YP_003876671.1| nucleoid DNA-binding protein [Streptococcus pneumoniae AP200]
gi|307127356|ref|YP_003879387.1| DNA-binding protein HU 1 [Streptococcus pneumoniae 670-6B]
gi|14972589|gb|AAK75224.1| DNA-binding protein HU [Streptococcus pneumoniae TIGR4]
gi|15458637|gb|AAK99824.1| Histone-like DNA-binding protein [Streptococcus pneumoniae R6]
gi|116076781|gb|ABJ54501.1| DNA-binding protein HU [Streptococcus pneumoniae D39]
gi|147755780|gb|EDK62825.1| DNA-binding protein HU [Streptococcus pneumoniae SP11-BS70]
gi|147758214|gb|EDK65216.1| DNA-binding protein HU [Streptococcus pneumoniae SP14-BS69]
gi|147761987|gb|EDK68949.1| DNA-binding protein HU [Streptococcus pneumoniae SP18-BS74]
gi|147763180|gb|EDK70120.1| DNA-binding protein HU [Streptococcus pneumoniae SP19-BS75]
gi|147922784|gb|EDK73901.1| DNA-binding protein HU [Streptococcus pneumoniae SP3-BS71]
gi|147925380|gb|EDK76458.1| DNA-binding protein HU [Streptococcus pneumoniae SP6-BS73]
gi|147927156|gb|EDK78193.1| DNA-binding protein HU [Streptococcus pneumoniae SP9-BS68]
gi|147929538|gb|EDK80532.1| DNA-binding protein HU [Streptococcus pneumoniae SP23-BS72]
gi|172043527|gb|EDT51573.1| DNA-binding protein HU 1 (DNA-binding protein II) (HB)
[Streptococcus pneumoniae CDC1873-00]
gi|182629472|gb|ACB90420.1| DNA-binding protein HU [Streptococcus pneumoniae CGSP14]
gi|183570502|gb|EDT91030.1| DNA-binding protein HU 1 (DNA-binding protein II) (HB)
[Streptococcus pneumoniae CDC1087-00]
gi|183572358|gb|EDT92886.1| DNA-binding protein HU 1 (DNA-binding protein II) (HB)
[Streptococcus pneumoniae SP195]
gi|183573808|gb|EDT94336.1| DNA-binding protein HU 1 (DNA-binding protein II) (HB)
[Streptococcus pneumoniae CDC0288-04]
gi|183576766|gb|EDT97294.1| DNA-binding protein HU 1 (DNA-binding protein II) (HB)
[Streptococcus pneumoniae CDC3059-06]
gi|183577917|gb|EDT98445.1| DNA-binding protein HU 1 (DNA-binding protein II) (HB)
[Streptococcus pneumoniae MLV-016]
gi|194357540|gb|ACF55988.1| DNA-binding protein HU [Streptococcus pneumoniae G54]
gi|220674310|emb|CAR68853.1| DNA-binding protein HU [Streptococcus pneumoniae ATCC 700669]
gi|225721544|gb|ACO17398.1| DNA-binding protein HU 1 (DNA-binding protein II) (HB)
[Streptococcus pneumoniae 70585]
gi|225723096|gb|ACO18949.1| DNA-binding protein HU 1 (DNA-binding protein II) (HB)
[Streptococcus pneumoniae JJA]
gi|225724771|gb|ACO20623.1| DNA-binding protein HU 1 (DNA-binding protein II) (HB)
[Streptococcus pneumoniae P1031]
gi|225727077|gb|ACO22928.1| DNA-binding protein HU 1 (DNA-binding protein II) (HB)
[Streptococcus pneumoniae Taiwan19F-14]
gi|298238465|gb|ADI69596.1| DNA-binding protein HU [Streptococcus pneumoniae TCH8431/19A]
gi|301794226|emb|CBW36646.1| DNA-binding protein HU [Streptococcus pneumoniae INV104]
gi|301800078|emb|CBW32675.1| DNA-binding protein HU [Streptococcus pneumoniae OXC141]
gi|301801998|emb|CBW34727.1| DNA-binding protein HU [Streptococcus pneumoniae INV200]
gi|302598850|gb|EFL65884.1| DNA-binding protein HU [Streptococcus pneumoniae BS455]
gi|302635928|gb|EFL66428.1| DNA-binding protein HU [Streptococcus pneumoniae SP14-BS292]
gi|302638981|gb|EFL69441.1| DNA-binding protein HU [Streptococcus pneumoniae SP-BS293]
gi|302641548|gb|EFL71910.1| DNA-binding protein HU [Streptococcus pneumoniae BS458]
gi|302643592|gb|EFL73861.1| DNA-binding protein HU [Streptococcus pneumoniae BS457]
gi|302645601|gb|EFL75832.1| DNA-binding protein HU [Streptococcus pneumoniae BS397]
gi|306409242|gb|ADM84669.1| Bacterial nucleoid DNA-binding protein [Streptococcus pneumoniae
AP200]
gi|306484418|gb|ADM91287.1| DNA-binding protein HU 1 [Streptococcus pneumoniae 670-6B]
gi|315419703|gb|ADU15821.1| histone-like protein [Streptococcus pseudopneumoniae]
gi|327389329|gb|EGE87674.1| bacterial DNA-binding family protein [Streptococcus pneumoniae
GA04375]
gi|332073475|gb|EGI83954.1| bacterial DNA-binding family protein [Streptococcus pneumoniae
GA17570]
gi|332075067|gb|EGI85538.1| bacterial DNA-binding family protein [Streptococcus pneumoniae
GA17545]
gi|332075447|gb|EGI85916.1| bacterial DNA-binding family protein [Streptococcus pneumoniae
GA41301]
gi|332200509|gb|EGJ14581.1| bacterial DNA-binding family protein [Streptococcus pneumoniae
GA41317]
gi|332201601|gb|EGJ15671.1| bacterial DNA-binding family protein [Streptococcus pneumoniae
GA47368]
gi|332202970|gb|EGJ17038.1| bacterial DNA-binding family protein [Streptococcus pneumoniae
GA47901]
Length = 91
Score = 78.3 bits (192), Expect = 4e-13, Method: Composition-based stats.
Identities = 31/90 (34%), Positives = 48/90 (53%), Gaps = 1/90 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K LI +A+ +L +D V + + LA G +V++ GFG+F VR+RA R
Sbjct: 3 NKQDLIAKVAEAT-ELTKKDSAAAVEAVFAAVADYLAAGEKVQLIGFGNFEVRERAERKG 61
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P K +++ VP F+AGK LK+ +
Sbjct: 62 RNPQTGKEMTIAASKVPAFKAGKALKDAVK 91
>gi|303258448|ref|ZP_07344451.1| integration host factor subunit alpha [Burkholderiales bacterium
1_1_47]
gi|330999748|ref|ZP_08323456.1| putative integration host factor, alpha subunit [Parasutterella
excrementihominis YIT 11859]
gi|302858894|gb|EFL81982.1| integration host factor subunit alpha [Burkholderiales bacterium
1_1_47]
gi|329573910|gb|EGG55490.1| putative integration host factor, alpha subunit [Parasutterella
excrementihominis YIT 11859]
Length = 136
Score = 77.9 bits (191), Expect = 4e-13, Method: Composition-based stats.
Identities = 20/89 (22%), Positives = 45/89 (50%), Gaps = 1/89 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
KS L I ++ L + ++IV++ +E + L G +++ FG FS+++++ R
Sbjct: 32 TKSHLADVIYEQF-GLPKRFCKEIVDLFFDEALECLVRGEELKLSNFGVFSIKQKSERPG 90
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P + + ++ + V F L++ +
Sbjct: 91 RNPKSGESAIIKARQVVSFHPSGQLRKEV 119
>gi|319794282|ref|YP_004155922.1| histone family protein DNA-binding protein [Variovorax paradoxus
EPS]
gi|315596745|gb|ADU37811.1| histone family protein DNA-binding protein [Variovorax paradoxus
EPS]
Length = 116
Score = 77.9 bits (191), Expect = 4e-13, Method: Composition-based stats.
Identities = 25/91 (27%), Positives = 42/91 (46%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M + L+ IA + ++ + +I+ + + A+ G V+I GFG+F RAAR
Sbjct: 1 MNRIELVEKIATTHT-VSKAEAARILETVTSAIVAAVKKGDPVQIVGFGTFKQVARAART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
P A I + + VP F G K ++
Sbjct: 60 GFNPQAGTAIKIAAQKVPKFVPGAAFKAAVD 90
>gi|304391930|ref|ZP_07373872.1| integration host factor, alpha subunit [Ahrensia sp. R2A130]
gi|303296159|gb|EFL90517.1| integration host factor, alpha subunit [Ahrensia sp. R2A130]
Length = 106
Score = 77.9 bits (191), Expect = 4e-13, Method: Composition-based stats.
Identities = 24/89 (26%), Positives = 47/89 (52%), Gaps = 1/89 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
++ L + +K L+ + K+V +LEE+ QA +G +++ FG+F+VR + R+
Sbjct: 7 TRADLAEAVYRK-VGLSRLESSKLVEAVLEEICQAAVDGESIKLSSFGTFAVRSKNERVG 65
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P + + + + V F+ LK R+
Sbjct: 66 RNPKTGEEVPITSRRVMVFKPSNILKSRV 94
>gi|313185099|gb|ADR50114.1| histone-like protein HBbu [Borrelia burgdorferi]
Length = 108
Score = 77.9 bits (191), Expect = 4e-13, Method: Composition-based stats.
Identities = 32/95 (33%), Positives = 50/95 (52%), Gaps = 5/95 (5%)
Query: 1 MIKSSLIGTIA----KKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKR 56
+ KS ++ I+ N KL + + +++ EE+ L +E R FG+F VRKR
Sbjct: 9 ITKSDIVDQISLNITNNNLKLEKKYIRLVIDAFFEELKGNLCLNNVIEFRSFGTFEVRKR 68
Query: 57 AAR-LARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R AR P + + V + V +FR GK+LKER+
Sbjct: 69 KGRLNARNPQTGEYVKVLDHHVAYFRPGKDLKERV 103
>gi|308372312|ref|ZP_07428191.2| LOW QUALITY PROTEIN: hypothetical protein TMDG_00186
[Mycobacterium tuberculosis SUMu004]
gi|308333643|gb|EFP22494.1| LOW QUALITY PROTEIN: hypothetical protein TMDG_00186
[Mycobacterium tuberculosis SUMu004]
Length = 109
Score = 77.9 bits (191), Expect = 4e-13, Method: Composition-based stats.
Identities = 29/90 (32%), Positives = 46/90 (51%), Gaps = 1/90 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI + +K + + V +++ + +A+ G V I GFG F R+RAAR+
Sbjct: 1 MNKAELIDVLTQKL-GSDRRQATAAVENVVDTIVRAVHKGDSVTITGFGVFEQRRRAARV 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
AR P + + V+ VP FR G K +
Sbjct: 60 ARNPRTGETVKVKPTSVPAFRPGAQFKAVV 89
>gi|41409122|ref|NP_961958.1| HupB [Mycobacterium avium subsp. paratuberculosis K-10]
gi|254776259|ref|ZP_05217775.1| DNA-binding protein HU [Mycobacterium avium subsp. avium ATCC
25291]
gi|41397942|gb|AAS05572.1| HupB [Mycobacterium avium subsp. paratuberculosis K-10]
gi|293652258|gb|ADE60770.1| laminin-binding histone-like protein [Mycobacterium avium subsp.
paratuberculosis K-10]
gi|293652260|gb|ADE60771.1| laminin-binding histone-like protein [Mycobacterium avium subsp.
paratuberculosis]
gi|293652262|gb|ADE60772.1| laminin-binding histone-like protein [Mycobacterium avium subsp.
paratuberculosis]
gi|293652264|gb|ADE60773.1| laminin-binding histone-like protein [Mycobacterium avium subsp.
avium]
gi|293652266|gb|ADE60774.1| laminin-binding histone-like protein [Mycobacterium avium]
Length = 212
Score = 77.9 bits (191), Expect = 4e-13, Method: Composition-based stats.
Identities = 29/90 (32%), Positives = 46/90 (51%), Gaps = 1/90 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI + +K + + V +++ + +A+ G V I GFG F R+RAAR+
Sbjct: 1 MNKAELIDVLTQKL-NTDRRQATAAVENVVDTIVRAVHKGDSVTITGFGVFEQRRRAARV 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
AR P + + V+ VP FR G K +
Sbjct: 60 ARNPRTGETVKVKPTSVPAFRPGAQFKAVV 89
>gi|313185021|gb|ADR50075.1| histone-like protein HBbu [Borrelia burgdorferi]
Length = 108
Score = 77.9 bits (191), Expect = 4e-13, Method: Composition-based stats.
Identities = 32/95 (33%), Positives = 50/95 (52%), Gaps = 5/95 (5%)
Query: 1 MIKSSLIGTIA----KKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKR 56
+ KS ++ I+ N KL + + +++ EE+ L +E R FG+F VRKR
Sbjct: 9 ITKSDIVDQISLNIRNNNLKLEKKYIRLVIDAFFEELKGNLCLNNVIEFRSFGTFEVRKR 68
Query: 57 AAR-LARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R AR P + + V + V +FR GK+LKER+
Sbjct: 69 KGRLNARNPQTGEYVKVLDHHVAYFRPGKDLKERV 103
>gi|195940565|ref|ZP_03085947.1| transcriptional regulator HU subunit beta [Escherichia coli
O157:H7 str. EC4024]
Length = 74
Score = 77.9 bits (191), Expect = 4e-13, Method: Composition-based stats.
Identities = 24/74 (32%), Positives = 41/74 (55%), Gaps = 1/74 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI IA ++ + ++ ++ +T++L G V + GFG+F+V++RAAR
Sbjct: 1 MNKSQLIDKIAA-GADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAART 59
Query: 61 ARAPLAQKVISVEE 74
R P K I++
Sbjct: 60 GRNPQTGKEITIAA 73
>gi|108757022|ref|YP_629691.1| DNA-binding protein HU [Myxococcus xanthus DK 1622]
gi|108460902|gb|ABF86087.1| DNA-binding protein HU [Myxococcus xanthus DK 1622]
Length = 89
Score = 77.9 bits (191), Expect = 4e-13, Method: Composition-based stats.
Identities = 25/90 (27%), Positives = 45/90 (50%), Gaps = 1/90 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ L+ +A + L + +I++++ + +A+ R GFG++SVR R AR
Sbjct: 1 MTKAELVEVVAAQTR-LTKKSAAQILDIVFTNIGKAVKKDARFSYPGFGTWSVRSRKARK 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P +++ ++ FR K LK L
Sbjct: 60 IRNPQTNEMMKLKASKTIGFRPAKELKNSL 89
>gi|89145724|gb|ABD62051.1| Hbb [Borrelia andersonii]
Length = 108
Score = 77.9 bits (191), Expect = 4e-13, Method: Composition-based stats.
Identities = 32/94 (34%), Positives = 50/94 (53%), Gaps = 5/94 (5%)
Query: 2 IKSSLIGTIA----KKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRA 57
KS ++ I+ N KL + + +++ EE+ L + +E R FG+F VRKR
Sbjct: 10 TKSDIVDQISLNIRNNNLKLEKKCIRLVIDAFFEELKNNLCSNNVIEFRSFGTFEVRKRR 69
Query: 58 AR-LARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R AR P + + V + V +FR GK+LKER+
Sbjct: 70 GRLNARNPQTGEYVKVLDHHVAYFRPGKDLKERV 103
>gi|254476572|ref|ZP_05089958.1| DNA-binding protein HU [Ruegeria sp. R11]
gi|214030815|gb|EEB71650.1| DNA-binding protein HU [Ruegeria sp. R11]
Length = 95
Score = 77.9 bits (191), Expect = 4e-13, Method: Composition-based stats.
Identities = 21/91 (23%), Positives = 41/91 (45%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ L+ +A++ + + ++ + +T+ ++ GG V + G G R+R R
Sbjct: 5 MTKTQLVAALAEEM-GSDKKAAGAALDAVCALITREVSGGGAVTLPGVGKIYCRERPERE 63
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + + E V K LK+ +N
Sbjct: 64 VRNPATGEKFTKEADKVVKMTIAKALKDSVN 94
>gi|116515025|ref|YP_802654.1| hypothetical protein BCc_084 [Buchnera aphidicola str. Cc (Cinara
cedri)]
gi|122285579|sp|Q057Y8|IHFA_BUCCC RecName: Full=Integration host factor subunit alpha;
Short=IHF-alpha
gi|116256879|gb|ABJ90561.1| integration host factor alpha-subunit [Buchnera aphidicola str.
Cc (Cinara cedri)]
Length = 104
Score = 77.9 bits (191), Expect = 4e-13, Method: Composition-based stats.
Identities = 25/91 (27%), Positives = 50/91 (54%), Gaps = 1/91 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ + + K +L+ Q+++ +V + EE+ ++L G V++ GFG+F +R + R
Sbjct: 4 TKAEISDYLFHKL-ELSKQNIKDLVEIFFEEVRKSLELGESVKLSGFGNFYLRDKKQRPG 62
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P + I + + V F+ G+ L+ R+ S
Sbjct: 63 RNPKTGEYIPISARRVVVFKPGQKLRSRVES 93
>gi|182435719|ref|YP_001823438.1| putative histone-like DNA-binding protein [Streptomyces griseus
subsp. griseus NBRC 13350]
gi|326776344|ref|ZP_08235609.1| histone family protein DNA-binding protein [Streptomyces cf.
griseus XylebKG-1]
gi|178464235|dbj|BAG18755.1| putative histone-like DNA-binding protein [Streptomyces griseus
subsp. griseus NBRC 13350]
gi|326656677|gb|EGE41523.1| histone family protein DNA-binding protein [Streptomyces cf.
griseus XylebKG-1]
Length = 224
Score = 77.9 bits (191), Expect = 5e-13, Method: Composition-based stats.
Identities = 32/95 (33%), Positives = 49/95 (51%), Gaps = 2/95 (2%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ L+ IA K Q V+ +L+ + +A+ G RV + GFGSF R AR
Sbjct: 1 MNKAQLVEAIADKVGG--RQQAADAVDAVLDAIVRAVVAGDRVSVTGFGSFEKVDRPARY 58
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDS 95
AR P + + V++ VP FRAG+ K+ ++
Sbjct: 59 ARNPQTGERVRVKKTSVPRFRAGQGFKDLVSGSKK 93
>gi|1280591|gb|AAC73105.1| histone-like protein HBbu [Borrelia burgdorferi DN127]
Length = 108
Score = 77.9 bits (191), Expect = 5e-13, Method: Composition-based stats.
Identities = 32/94 (34%), Positives = 50/94 (53%), Gaps = 5/94 (5%)
Query: 2 IKSSLIGTIA----KKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRA 57
KS ++ I+ N KL + + +++ EE+ L + +E R FG+F VRKR
Sbjct: 10 TKSDIVDQISLNIRNNNLKLEKKCIRLVIDAFFEELKSNLCSNNVIEFRSFGTFEVRKRR 69
Query: 58 AR-LARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R AR P + + V + V +FR GK+LKER+
Sbjct: 70 GRLNARNPQTGEYVKVLDHHVAYFRPGKDLKERV 103
>gi|50365017|ref|YP_053442.1| histone-like DNA-binding protein [Mesoplasma florum L1]
gi|50363573|gb|AAT75558.1| predicted histone-like DNA-binding protein [Mesoplasma florum L1]
Length = 90
Score = 77.9 bits (191), Expect = 5e-13, Method: Composition-based stats.
Identities = 33/91 (36%), Positives = 48/91 (52%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K LI I N ++ + E +VN L + + + L++G V I GFG F++ +RAAR
Sbjct: 1 MTKKDLINEIIA-NENISKVECEAVVNSLFDLIIEELSSGNEVSIAGFGKFAISERAARE 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
P IS+ F+A K LKE+LN
Sbjct: 60 GINPSTGDKISIAASKSAKFKAAKQLKEKLN 90
>gi|3913401|sp|Q44625|DBH_BORAD RecName: Full=DNA-binding protein HBbu
gi|1280589|gb|AAC73108.1| histone-like protein HBbu [Borrelia andersonii]
gi|89145722|gb|ABD62050.1| Hbb [Borrelia andersonii]
gi|89145726|gb|ABD62052.1| Hbb [Borrelia andersonii]
Length = 108
Score = 77.9 bits (191), Expect = 5e-13, Method: Composition-based stats.
Identities = 32/94 (34%), Positives = 50/94 (53%), Gaps = 5/94 (5%)
Query: 2 IKSSLIGTIA----KKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRA 57
KS ++ I+ N KL + + +++ EE+ L + +E R FG+F VRKR
Sbjct: 10 TKSDIVDQISLNIRNNNLKLEKKYIRLVIDAFFEELKSNLCSNNVIEFRSFGTFEVRKRR 69
Query: 58 AR-LARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R AR P + + V + V +FR GK+LKER+
Sbjct: 70 GRLNARNPQTGEYVKVLDHHVAYFRPGKDLKERV 103
>gi|218777981|ref|YP_002429299.1| histone family protein DNA-binding protein [Desulfatibacillum
alkenivorans AK-01]
gi|218759365|gb|ACL01831.1| histone family protein DNA-binding protein [Desulfatibacillum
alkenivorans AK-01]
Length = 95
Score = 77.9 bits (191), Expect = 5e-13, Method: Composition-based stats.
Identities = 22/90 (24%), Positives = 41/90 (45%), Gaps = 2/90 (2%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K ++ I ++ +V L+E + +L G V I GFG F ++++ R
Sbjct: 4 TKCDIVEKIYD--MGFTKKESVDVVEQLIEIIKDSLQEGDDVLISGFGKFCIKQKDQRRG 61
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P K + + E+ V F+ L++ +N
Sbjct: 62 RNPATGKDLMLRERKVVTFKCSGKLRDLIN 91
>gi|227875778|ref|ZP_03993906.1| DNA-binding protein HU [Mobiluncus mulieris ATCC 35243]
gi|306819051|ref|ZP_07452768.1| DNA-binding protein HU [Mobiluncus mulieris ATCC 35239]
gi|227843720|gb|EEJ53901.1| DNA-binding protein HU [Mobiluncus mulieris ATCC 35243]
gi|304648244|gb|EFM45552.1| DNA-binding protein HU [Mobiluncus mulieris ATCC 35239]
Length = 93
Score = 77.9 bits (191), Expect = 5e-13, Method: Composition-based stats.
Identities = 20/89 (22%), Positives = 40/89 (44%), Gaps = 1/89 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
++ L+ IAK+ L+ + + ++ + + ++L G V++ G + RAAR
Sbjct: 4 NRTELVAEIAKRAA-LSKTEADAALSAFQDILIESLKKGETVKVTGLMNVERVSRAARTG 62
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P + I + AG LK+ +
Sbjct: 63 RNPRTGEEIKIPAGFGVKISAGSTLKKAV 91
>gi|111115057|ref|YP_709675.1| hbbU protein [Borrelia afzelii PKo]
gi|216263785|ref|ZP_03435779.1| small DNA-binding protein Hbb [Borrelia afzelii ACA-1]
gi|3913406|sp|Q57220|DBH_BORAF RecName: Full=DNA-binding protein HBbu
gi|1280571|gb|AAC73093.1| histone-like protein HBbu [Borrelia afzelii]
gi|1280575|gb|AAC73095.1| histone-like protein HBbu [Borrelia afzelii]
gi|1280577|gb|AAC73096.1| histone-like protein HBbu [Borrelia afzelii]
gi|1280579|gb|AAC73097.1| histone-like protein HBbu [Borrelia afzelii]
gi|1280581|gb|AAC73098.1| histone-like protein HBbu [Borrelia afzelii]
gi|73762244|gb|AAZ83610.1| Hbb [Borrelia afzelii]
gi|110890331|gb|ABH01499.1| hbbU protein [Borrelia afzelii PKo]
gi|215979829|gb|EEC20651.1| small DNA-binding protein Hbb [Borrelia afzelii ACA-1]
gi|313184941|gb|ADR50035.1| histone-like protein HBbu [Borrelia burgdorferi]
gi|313184947|gb|ADR50038.1| histone-like protein HBbu [Borrelia burgdorferi]
gi|313184949|gb|ADR50039.1| histone-like protein HBbu [Borrelia burgdorferi]
gi|313184951|gb|ADR50040.1| histone-like protein HBbu [Borrelia burgdorferi]
gi|313184953|gb|ADR50041.1| histone-like protein HBbu [Borrelia burgdorferi]
gi|313184955|gb|ADR50042.1| histone-like protein HBbu [Borrelia burgdorferi]
gi|313184957|gb|ADR50043.1| histone-like protein HBbu [Borrelia burgdorferi]
gi|313184959|gb|ADR50044.1| histone-like protein HBbu [Borrelia burgdorferi]
gi|313184961|gb|ADR50045.1| histone-like protein HBbu [Borrelia burgdorferi]
gi|313184963|gb|ADR50046.1| histone-like protein HBbu [Borrelia burgdorferi]
gi|313184965|gb|ADR50047.1| histone-like protein HBbu [Borrelia burgdorferi]
gi|313184967|gb|ADR50048.1| histone-like protein HBbu [Borrelia burgdorferi]
gi|313184969|gb|ADR50049.1| histone-like protein HBbu [Borrelia burgdorferi]
gi|313184971|gb|ADR50050.1| histone-like protein HBbu [Borrelia burgdorferi]
gi|313184973|gb|ADR50051.1| histone-like protein HBbu [Borrelia burgdorferi]
gi|313184975|gb|ADR50052.1| histone-like protein HBbu [Borrelia burgdorferi]
gi|313184977|gb|ADR50053.1| histone-like protein HBbu [Borrelia burgdorferi]
Length = 108
Score = 77.9 bits (191), Expect = 5e-13, Method: Composition-based stats.
Identities = 32/94 (34%), Positives = 50/94 (53%), Gaps = 5/94 (5%)
Query: 2 IKSSLIGTIA----KKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRA 57
KS ++ I+ N KL + + +++ EE+ L + +E R FG+F VRKR
Sbjct: 10 TKSDIVDQISLNIRNNNLKLEKKYIRLVIDAFFEELKSNLCSNNVIEFRSFGTFEVRKRK 69
Query: 58 AR-LARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R AR P + + V + V +FR GK+LKER+
Sbjct: 70 GRLNARNPQTGEYVKVLDHHVAYFRPGKDLKERV 103
>gi|332091766|gb|EGI96845.1| integration host factor subunit beta [Shigella dysenteriae
155-74]
gi|332093460|gb|EGI98518.1| integration host factor subunit beta [Shigella boydii 3594-74]
gi|332758997|gb|EGJ89307.1| integration host factor subunit beta [Shigella flexneri 4343-70]
gi|332767859|gb|EGJ98049.1| ihfB [Shigella flexneri 2930-71]
Length = 66
Score = 77.9 bits (191), Expect = 5e-13, Method: Composition-based stats.
Identities = 31/63 (49%), Positives = 39/63 (61%)
Query: 29 LLEEMTQALANGGRVEIRGFGSFSVRKRAARLARAPLAQKVISVEEKMVPFFRAGKNLKE 88
+LE M LA G R+EIRGFGSFS+ RA R R P + +E K VP F+ GK L++
Sbjct: 1 MLEHMASTLAQGERIEIRGFGSFSLHYRAPRTGRNPKTGDKVELEGKYVPHFKPGKELRD 60
Query: 89 RLN 91
R N
Sbjct: 61 RAN 63
>gi|222447026|pdb|3C4I|A Chain A, Crystal Structure Analysis Of N Terminal Region
Containing The Dimerization Domain And Dna Binding
Domain Of Hu Protein(Histone Like Protein-Dna Binding)
From Mycobacterium Tuberculosis [h37rv]
gi|222447027|pdb|3C4I|B Chain B, Crystal Structure Analysis Of N Terminal Region
Containing The Dimerization Domain And Dna Binding
Domain Of Hu Protein(Histone Like Protein-Dna Binding)
From Mycobacterium Tuberculosis [h37rv]
Length = 99
Score = 77.9 bits (191), Expect = 5e-13, Method: Composition-based stats.
Identities = 29/90 (32%), Positives = 46/90 (51%), Gaps = 1/90 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI + +K + + V +++ + +A+ G V I GFG F R+RAAR+
Sbjct: 1 MNKAELIDVLTQKL-GSDRRQATAAVENVVDTIVRAVHKGDSVTITGFGVFEQRRRAARV 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
AR P + + V+ VP FR G K +
Sbjct: 60 ARNPRTGETVKVKPTSVPAFRPGAQFKAVV 89
>gi|237744930|ref|ZP_04575411.1| DNA-binding protein HU [Fusobacterium sp. 7_1]
gi|256028389|ref|ZP_05442223.1| DNA-binding protein HU [Fusobacterium sp. D11]
gi|260494711|ref|ZP_05814841.1| integration host factor, alpha subunit [Fusobacterium sp. 3_1_33]
gi|289766314|ref|ZP_06525692.1| DNA-binding protein HU [Fusobacterium sp. D11]
gi|229432159|gb|EEO42371.1| DNA-binding protein HU [Fusobacterium sp. 7_1]
gi|260197873|gb|EEW95390.1| integration host factor, alpha subunit [Fusobacterium sp. 3_1_33]
gi|289717869|gb|EFD81881.1| DNA-binding protein HU [Fusobacterium sp. D11]
Length = 91
Score = 77.9 bits (191), Expect = 5e-13, Method: Composition-based stats.
Identities = 26/91 (28%), Positives = 42/91 (46%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K + +K + EK V+++ M + L +G + I FG V +RA RL
Sbjct: 1 MTKKEFAKLLFEKGVFTTRTEAEKKVDIIFNSMEKILLDGENLSIINFGKLEVIERAPRL 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + + + ++ FR GK E+LN
Sbjct: 61 GRNPKTGEEVKIGKRKSIKFRPGKAFLEKLN 91
>gi|289167992|ref|YP_003446261.1| histone-like protein [Streptococcus mitis B6]
gi|288907559|emb|CBJ22396.1| histone-like protein [Streptococcus mitis B6]
Length = 91
Score = 77.5 bits (190), Expect = 5e-13, Method: Composition-based stats.
Identities = 34/90 (37%), Positives = 50/90 (55%), Gaps = 1/90 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K LI +A+ +L +D V + +T+ LA G +V++ GFG+F VR+RAAR
Sbjct: 3 NKQDLIAKVAEAT-ELTKKDSAAAVEAVFAAVTEYLAAGEKVQLIGFGNFEVRERAARKG 61
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P K I + VP F+AGK LK+ +
Sbjct: 62 RNPQTGKEIKIAASKVPAFKAGKALKDAVK 91
>gi|270292588|ref|ZP_06198799.1| DNA-binding protein HU [Streptococcus sp. M143]
gi|293365596|ref|ZP_06612305.1| DNA-binding protein HU [Streptococcus oralis ATCC 35037]
gi|306829650|ref|ZP_07462840.1| DNA-binding protein HU [Streptococcus mitis ATCC 6249]
gi|307703547|ref|ZP_07640489.1| putative DNA-binding protein HU [Streptococcus oralis ATCC 35037]
gi|315613311|ref|ZP_07888220.1| DNA-binding protein HU [Streptococcus sanguinis ATCC 49296]
gi|322375383|ref|ZP_08049896.1| DNA-binding protein HU [Streptococcus sp. C300]
gi|331266215|ref|YP_004325845.1| histone-like protein [Streptococcus oralis Uo5]
gi|270278567|gb|EFA24413.1| DNA-binding protein HU [Streptococcus sp. M143]
gi|291315964|gb|EFE56408.1| DNA-binding protein HU [Streptococcus oralis ATCC 35037]
gi|304428736|gb|EFM31826.1| DNA-binding protein HU [Streptococcus mitis ATCC 6249]
gi|307622954|gb|EFO01949.1| putative DNA-binding protein HU [Streptococcus oralis ATCC 35037]
gi|315314546|gb|EFU62589.1| DNA-binding protein HU [Streptococcus sanguinis ATCC 49296]
gi|315419705|gb|ADU15822.1| histone-like protein [Streptococcus oralis]
gi|321279646|gb|EFX56686.1| DNA-binding protein HU [Streptococcus sp. C300]
gi|326682887|emb|CBZ00504.1| histone-like protein [Streptococcus oralis Uo5]
Length = 91
Score = 77.5 bits (190), Expect = 5e-13, Method: Composition-based stats.
Identities = 34/90 (37%), Positives = 51/90 (56%), Gaps = 1/90 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K LI +A+ +L +D V+ + +T+ LA G +V++ GFG+F VR+RAAR
Sbjct: 3 NKQDLIAKVAEAT-ELTKKDSAAAVDAVFAAVTEYLAAGEKVQLIGFGNFEVRERAARKG 61
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P K I + VP F+AGK LK+ +
Sbjct: 62 RNPQTGKEIKIAASKVPAFKAGKALKDAVK 91
>gi|84498303|ref|ZP_00997100.1| Histone-like bacterial DNA-binding protein [Janibacter sp.
HTCC2649]
gi|84381803|gb|EAP97686.1| Histone-like bacterial DNA-binding protein [Janibacter sp.
HTCC2649]
Length = 235
Score = 77.5 bits (190), Expect = 5e-13, Method: Composition-based stats.
Identities = 26/95 (27%), Positives = 48/95 (50%), Gaps = 2/95 (2%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K L+ + K+ + + + ++ +L+ + + + GG+V I GFG+F +RAAR
Sbjct: 1 MNKGELVRELEKRLG--SRKAATEALDAVLDTIVREVTKGGKVGITGFGTFDRVERAART 58
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDS 95
R P + + + + P FRAG K + P +
Sbjct: 59 GRNPHSGASVRIPKSKAPRFRAGAAFKTYVKKPSA 93
>gi|94707|pir||S12888 DNA-binding protein II - Thermus aquaticus
gi|227284|prf||1701290A DNA binding protein II
Length = 95
Score = 77.5 bits (190), Expect = 5e-13, Method: Composition-based stats.
Identities = 33/90 (36%), Positives = 54/90 (60%), Gaps = 1/90 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ L+ +A+ L DV+ +V+ LL ++ +ALANG +V++ GFG+F VRKR AR
Sbjct: 7 TKADLVDQVAQAT-GLKLLDVKAMVDALLAKVEEALANGSKVQLTGFGTFEVRKRKARTG 65
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
P ++ I + P F+ GK LK+++
Sbjct: 66 VKPGTKEKIKIPATQYPAFKPGKALKDKVK 95
>gi|219883076|ref|YP_002478240.1| histone family protein DNA-binding protein [Arthrobacter
chlorophenolicus A6]
gi|219862082|gb|ACL42423.1| histone family protein DNA-binding protein [Arthrobacter
chlorophenolicus A6]
Length = 93
Score = 77.5 bits (190), Expect = 5e-13, Method: Composition-based stats.
Identities = 22/89 (24%), Positives = 41/89 (46%), Gaps = 1/89 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
++ L+ +A+K+ DV +I++ + E ++A G ++ I G+ + RAAR
Sbjct: 4 NRAQLVDQVAEKS-GATKADVNRILDGMFEVFETSVAAGEKITIPGWLAVERTDRAARTG 62
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P + I + AG LK +
Sbjct: 63 RNPQTGESIEIAAGHSVKLTAGSKLKAAI 91
>gi|257455759|ref|ZP_05620985.1| integration host factor subunit alpha [Enhydrobacter aerosaccus
SK60]
gi|257446773|gb|EEV21790.1| integration host factor subunit alpha [Enhydrobacter aerosaccus
SK60]
Length = 105
Score = 77.5 bits (190), Expect = 5e-13, Method: Composition-based stats.
Identities = 22/92 (23%), Positives = 46/92 (50%), Gaps = 1/92 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K +I + + N + QD V E+++ L G +V++ GFG+F ++ ++ R
Sbjct: 11 TKLEMINHLME-NLGMTRQDSRAFVENFFSELSETLTKGHQVKLSGFGNFEIKDKSQRPG 69
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLNSP 93
R P +++ V + V F+AG+ ++ +
Sbjct: 70 RNPKTGEMVHVTARRVVTFKAGQKMRRSIEDK 101
>gi|255322354|ref|ZP_05363500.1| DNA-binding protein HU 1 [Campylobacter showae RM3277]
gi|255300727|gb|EET79998.1| DNA-binding protein HU 1 [Campylobacter showae RM3277]
Length = 100
Score = 77.5 bits (190), Expect = 5e-13, Method: Composition-based stats.
Identities = 35/88 (39%), Positives = 48/88 (54%), Gaps = 1/88 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ I +A K L+ +D K+V+ LE + + L NG + GFG+F+ +RAAR
Sbjct: 1 MKKADFIQAVADK-AGLSKKDSLKVVDAALETIEEVLKNGDSISFIGFGTFATAERAARK 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKE 88
AR P KVI V F+ GK LKE
Sbjct: 60 ARVPGTTKVIDVPASKAVKFKVGKKLKE 87
>gi|261749642|ref|YP_003257328.1| histone-like DNA-binding protein HU-beta [Blattabacterium sp.
(Periplaneta americana) str. BPLAN]
gi|261497735|gb|ACX84185.1| histone-like DNA-binding protein HU-beta [Blattabacterium sp.
(Periplaneta americana) str. BPLAN]
Length = 88
Score = 77.5 bits (190), Expect = 5e-13, Method: Composition-based stats.
Identities = 26/86 (30%), Positives = 44/86 (51%), Gaps = 1/86 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ L+ +IA+K + + + + +E + ++L G +V + GFG+FSV +R R
Sbjct: 1 MNKTELVNSIAEKT-GITKIKAKNVTDAFIETVIESLKKGNKVTLVGFGTFSVVERNPRN 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNL 86
P K I + K V F+ G L
Sbjct: 60 GINPRTGKKIHIPGKKVAKFKIGAEL 85
>gi|319404309|emb|CBI77902.1| integration host factor alpha subunit [Bartonella rochalimae ATCC
BAA-1498]
Length = 103
Score = 77.5 bits (190), Expect = 5e-13, Method: Composition-based stats.
Identities = 24/89 (26%), Positives = 48/89 (53%), Gaps = 1/89 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
++ L G + +K L++ + +V ++L+E+ +L G V++ F +F VR ++ R+
Sbjct: 7 TRADLAGAVCRK-VGLSHTESADLVELVLDEICNSLVRGEMVKLSSFATFQVRDKSERVG 65
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P S+ + V F+A LK+R+
Sbjct: 66 RNPKTGVEASIPPRRVVTFKAANVLKKRI 94
>gi|167764650|ref|ZP_02436771.1| hypothetical protein BACSTE_03040 [Bacteroides stercoris ATCC
43183]
gi|167697319|gb|EDS13898.1| hypothetical protein BACSTE_03040 [Bacteroides stercoris ATCC
43183]
Length = 101
Score = 77.5 bits (190), Expect = 6e-13, Method: Composition-based stats.
Identities = 24/93 (25%), Positives = 47/93 (50%), Gaps = 1/93 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K L+ IA++ +N ++ K++N+++ + + + G++ + GFG+F V+++ AR
Sbjct: 1 MNKKELVDAIAEET-GMNKKESRKLLNVIIGIVIEEMKKDGKLLLMGFGTFFVKQKPARR 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSP 93
P I + K V +FR L L
Sbjct: 60 GMNPSTFVPIEIPAKRVVYFRPSAYLNSLLKRK 92
>gi|1280573|gb|AAC73094.1| histone-like protein HBbu [Borrelia afzelii]
Length = 108
Score = 77.5 bits (190), Expect = 6e-13, Method: Composition-based stats.
Identities = 33/94 (35%), Positives = 50/94 (53%), Gaps = 5/94 (5%)
Query: 2 IKSSLIGTIA----KKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRA 57
KS ++ IA N KL + + +++ EE+ L + +E R FG+F VRKR
Sbjct: 10 TKSDIVDQIALNIKNNNLKLEKKYIRLVIDAFFEELKSNLCSNNVIEFRSFGTFEVRKRK 69
Query: 58 AR-LARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R AR P + + V + V +FR GK+LKER+
Sbjct: 70 GRLNARNPQTGEYVKVLDHNVAYFRPGKDLKERV 103
>gi|318606261|emb|CBY27759.1| integration host factor beta subunit [Yersinia enterocolitica
subsp. palearctica Y11]
Length = 66
Score = 77.5 bits (190), Expect = 6e-13, Method: Composition-based stats.
Identities = 31/63 (49%), Positives = 40/63 (63%)
Query: 29 LLEEMTQALANGGRVEIRGFGSFSVRKRAARLARAPLAQKVISVEEKMVPFFRAGKNLKE 88
+LE M LA G R+EIRGFGSFS+ RA R+ R P + +E K VP F+ GK L++
Sbjct: 1 MLEHMAGTLAEGERIEIRGFGSFSLHYRAPRVGRNPKTGAKVELEGKYVPHFKPGKELRD 60
Query: 89 RLN 91
R N
Sbjct: 61 RAN 63
>gi|5419919|emb|CAB46493.1| histone-like protein [Mycobacterium bovis]
Length = 205
Score = 77.5 bits (190), Expect = 6e-13, Method: Composition-based stats.
Identities = 29/90 (32%), Positives = 46/90 (51%), Gaps = 1/90 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI + +K + + V +++ + +A+ G V I GFG F R+RAAR+
Sbjct: 1 MNKAELIDVLTQKL-GSDRRQATAAVENVVDTIVRAVHKGDSVTITGFGVFEQRRRAARV 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
AR P + + V+ VP FR G K +
Sbjct: 60 ARNPRTGETVKVKPTSVPAFRPGAQFKAVV 89
>gi|114777026|ref|ZP_01452046.1| histone-like protein [Mariprofundus ferrooxydans PV-1]
gi|114552547|gb|EAU55007.1| histone-like protein [Mariprofundus ferrooxydans PV-1]
Length = 90
Score = 77.5 bits (190), Expect = 6e-13, Method: Composition-based stats.
Identities = 35/91 (38%), Positives = 47/91 (51%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI +A E + +L +T LANG V + GFG+FSV +RAAR
Sbjct: 1 MNKAELINHVAAAADLSKAAAGEAVEAVLSG-ITGTLANGDAVSLVGFGTFSVAERAART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
AR P + I V P F+AGK LK+ +
Sbjct: 60 ARNPRTGEAIEVGASKAPKFKAGKALKDAVK 90
>gi|296876928|ref|ZP_06900973.1| DNA-binding protein HU [Streptococcus parasanguinis ATCC 15912]
gi|296432059|gb|EFH17861.1| DNA-binding protein HU [Streptococcus parasanguinis ATCC 15912]
Length = 91
Score = 77.5 bits (190), Expect = 6e-13, Method: Composition-based stats.
Identities = 33/90 (36%), Positives = 51/90 (56%), Gaps = 1/90 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K LI +A+ +L +D V+ + +++ L+ G +V++ GFG+F VR+RAAR
Sbjct: 3 NKQDLIAKVAEAT-ELTKKDSAAAVDAVFAAVSEYLSKGEKVQLIGFGNFEVRERAARKG 61
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P K I + VP F+AGK LKE +
Sbjct: 62 RNPQTGKEIEIAASKVPAFKAGKALKEAVK 91
>gi|3913402|sp|Q45231|DBH_BORJA RecName: Full=DNA-binding protein HBbu
gi|1280597|gb|AAC73099.1| histone-like protein HBbu [Borrelia japonica]
gi|1280599|gb|AAC73100.1| histone-like protein HBbu [Borrelia japonica]
gi|1280601|gb|AAC73101.1| histone-like protein HBbu [Borrelia japonica]
gi|1280603|gb|AAC73102.1| histone-like protein HBbu [Borrelia japonica]
gi|1280605|gb|AAC73103.1| histone-like protein HBbu [Borrelia japonica]
Length = 108
Score = 77.5 bits (190), Expect = 6e-13, Method: Composition-based stats.
Identities = 32/94 (34%), Positives = 50/94 (53%), Gaps = 5/94 (5%)
Query: 2 IKSSLIGTIA----KKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRA 57
KS ++ I+ N KL + + +++ EE+ L + +E R FG+F VRKR
Sbjct: 10 TKSDIVDQISLNIRNNNLKLEKKYIRLVIDAFFEELKGNLCSNNVIEFRSFGTFEVRKRK 69
Query: 58 AR-LARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R AR P + + V + V +FR GK+LKER+
Sbjct: 70 GRLNARNPQTGEYVKVLDHHVAYFRPGKDLKERV 103
>gi|315419723|gb|ADU15831.1| histone-like protein [Streptococcus mitis]
Length = 91
Score = 77.5 bits (190), Expect = 6e-13, Method: Composition-based stats.
Identities = 33/90 (36%), Positives = 49/90 (54%), Gaps = 1/90 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K LI +A+ +L +D V + + LA G +V++ GFG+F VR+RAAR
Sbjct: 3 NKQDLIAKVAEAT-ELTKKDSAAAVEAVFAAVADYLAAGEKVQLIGFGNFEVRERAARKG 61
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P K I++ VP F+AGK LK+ +
Sbjct: 62 RNPQTGKEITIAASKVPAFKAGKALKDVIK 91
>gi|224534210|ref|ZP_03674788.1| DNA-binding protein HU [Borrelia spielmanii A14S]
gi|73762238|gb|AAZ83607.1| Hbb [Borrelia spielmanii]
gi|74476805|gb|ABA08453.1| Hbb [Borrelia spielmanii]
gi|74476807|gb|ABA08454.1| Hbb [Borrelia spielmanii]
gi|74476809|gb|ABA08455.1| Hbb [Borrelia spielmanii]
gi|78482926|emb|CAJ20126.1| hbb protein [Borrelia spielmanii]
gi|78482928|emb|CAJ20127.1| hbb protein [Borrelia spielmanii]
gi|224514312|gb|EEF84628.1| DNA-binding protein HU [Borrelia spielmanii A14S]
Length = 108
Score = 77.5 bits (190), Expect = 6e-13, Method: Composition-based stats.
Identities = 31/95 (32%), Positives = 50/95 (52%), Gaps = 5/95 (5%)
Query: 1 MIKSSLIGTIA----KKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKR 56
+ KS ++ I+ N KL + + +++ +E+ L +E R FG+F VRKR
Sbjct: 9 ITKSDIVDQISLNIRNNNLKLEKKYIRLVIDAFFQELKSNLCLNNVIEFRSFGTFEVRKR 68
Query: 57 AAR-LARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R AR P + + V + V +FR GK+LKER+
Sbjct: 69 KGRLNARNPQTGEYVKVLDHHVAYFRPGKDLKERV 103
>gi|91977359|ref|YP_570018.1| histone-like DNA-binding protein [Rhodopseudomonas palustris BisB5]
gi|91683815|gb|ABE40117.1| histone-like DNA-binding protein [Rhodopseudomonas palustris BisB5]
Length = 103
Score = 77.5 bits (190), Expect = 6e-13, Method: Composition-based stats.
Identities = 30/85 (35%), Positives = 46/85 (54%), Gaps = 1/85 (1%)
Query: 6 LIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLARAPL 65
L +A+++ +L+ + E I+ L+ +T+ L G R+ I G G VRKRAAR R P
Sbjct: 20 LAAALAEEH-ELSKKQTEAILGDLVARITKHLKKGERIRIVGLGILQVRKRAARTGRNPA 78
Query: 66 AQKVISVEEKMVPFFRAGKNLKERL 90
+ I ++ FRA K LKE +
Sbjct: 79 TGETIQIKASKKVAFRAAKELKEAI 103
>gi|187918104|ref|YP_001883667.1| DNA-binding protein HbbU [Borrelia hermsii DAH]
gi|119860952|gb|AAX16747.1| DNA-binding protein HbbU [Borrelia hermsii DAH]
Length = 108
Score = 77.5 bits (190), Expect = 6e-13, Method: Composition-based stats.
Identities = 31/94 (32%), Positives = 52/94 (55%), Gaps = 5/94 (5%)
Query: 2 IKSSLIGTIA----KKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRA 57
KS ++ I+ N +L + + +V+ EE+ +L +E R FG+F +RKR
Sbjct: 10 TKSDIVDQISLNIKNSNERLEKKYIRLVVDAFFEELKNSLCLNNIIEFRSFGTFELRKRK 69
Query: 58 AR-LARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R AR P + ++V++ V +FR GK+LKER+
Sbjct: 70 GRQNARNPQTGEYVNVDDHHVAYFRPGKDLKERV 103
>gi|124007134|sp|Q1RHD4|DBH_RICBR RecName: Full=DNA-binding protein HU
Length = 101
Score = 77.5 bits (190), Expect = 6e-13, Method: Composition-based stats.
Identities = 29/101 (28%), Positives = 44/101 (43%), Gaps = 8/101 (7%)
Query: 1 MIKSSLIGTIAKKNP--------KLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFS 52
M K+ I + + D EK +N +LE + A + V I GFGSF
Sbjct: 1 MNKTEFIAFMTEHGHHHKHQGHKSFTKADAEKALNWVLESIISATKHQHSVNITGFGSFG 60
Query: 53 VRKRAARLARAPLAQKVISVEEKMVPFFRAGKNLKERLNSP 93
++ R +R R P +++ P F+AG LKE N+
Sbjct: 61 IQSRKSREGRNPKTGAKMTIPAYKQPVFKAGSKLKEACNNK 101
>gi|218280828|ref|ZP_03487461.1| hypothetical protein EUBIFOR_00019 [Eubacterium biforme DSM 3989]
gi|218217859|gb|EEC91397.1| hypothetical protein EUBIFOR_00019 [Eubacterium biforme DSM 3989]
Length = 94
Score = 77.5 bits (190), Expect = 6e-13, Method: Composition-based stats.
Identities = 24/91 (26%), Positives = 44/91 (48%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
+ K L +A++ + +D V + + + L + G V++ GFG FS+ +RAAR
Sbjct: 5 INKKDLAEKLAEEF-GCSKKDATAYVQFVFDTVADTLKDNGTVDVFGFGKFSISERAART 63
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
P ++ I + F+A K LK+ +
Sbjct: 64 GINPATKEKIEIAASKSVKFKASKALKDAVK 94
>gi|86136850|ref|ZP_01055428.1| DNA-binding protein HU [Roseobacter sp. MED193]
gi|85826174|gb|EAQ46371.1| DNA-binding protein HU [Roseobacter sp. MED193]
Length = 97
Score = 77.5 bits (190), Expect = 6e-13, Method: Composition-based stats.
Identities = 21/93 (22%), Positives = 38/93 (40%), Gaps = 1/93 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ L+ +A + + + + + + +T ++ GG V + G G R+R R
Sbjct: 5 MTKTQLVAALADEMGE-DKKTAGAALEAVCALITSEVSAGGAVTLPGVGKIYCRERPERE 63
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSP 93
R P + E V K LK+ +N
Sbjct: 64 VRNPATGEKFMKEADKVVKMTIAKALKDSVNGE 96
>gi|116747454|ref|YP_844141.1| histone family protein DNA-binding protein [Syntrophobacter
fumaroxidans MPOB]
gi|116696518|gb|ABK15706.1| histone family protein DNA-binding protein [Syntrophobacter
fumaroxidans MPOB]
Length = 95
Score = 77.5 bits (190), Expect = 6e-13, Method: Composition-based stats.
Identities = 27/90 (30%), Positives = 44/90 (48%), Gaps = 1/90 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ ++ + KN + +I+ L E + Q L +G V I GFG FSV+++ R
Sbjct: 4 TKAHIVENLFAKNI-FTKTESAQIIETLFEIVKQTLEHGEDVLISGFGKFSVKEKNQRRG 62
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P I + + V F+ L+ER+N
Sbjct: 63 RNPQTGDPIMLSPRKVVTFKCSGVLRERIN 92
>gi|1280595|gb|AAC73107.1| histone-like protein HBbu [Borrelia burgdorferi]
Length = 108
Score = 77.1 bits (189), Expect = 6e-13, Method: Composition-based stats.
Identities = 31/94 (32%), Positives = 50/94 (53%), Gaps = 5/94 (5%)
Query: 2 IKSSLIGTIA----KKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRA 57
KS ++ I+ N KL + + +++ EE+ L + +E R FG+F +RKR
Sbjct: 10 TKSDIVDQISLNIRNNNLKLEKKYIRLVIDAFFEELKSNLCSNNVIEFRSFGTFELRKRK 69
Query: 58 AR-LARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R AR P + + V + V +FR GK+LKER+
Sbjct: 70 GRLNARNPQTGEYVKVLDHHVAYFRPGKDLKERV 103
>gi|1280587|gb|AAC73092.1| histone-like protein HBbu [Borrelia burgdorferi]
gi|89145738|gb|ABD62058.1| Hbb [Borrelia genomosp. 2]
Length = 108
Score = 77.1 bits (189), Expect = 7e-13, Method: Composition-based stats.
Identities = 32/94 (34%), Positives = 50/94 (53%), Gaps = 5/94 (5%)
Query: 2 IKSSLIGTIA----KKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRA 57
KS ++ I+ N KL + + +++ EE+ L + +E R FG+F VRKR
Sbjct: 10 TKSDIVDQISLNIRNNNLKLEKKYIRLVIDAFFEELKSNLCSNNVIEFRSFGTFEVRKRK 69
Query: 58 AR-LARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R AR P + + V + V +FR GK+LKER+
Sbjct: 70 GRLNARNPQTGEYVKVLDHHVAYFRPGKDLKERV 103
>gi|254486971|ref|ZP_05100176.1| DNA-binding protein HU [Roseobacter sp. GAI101]
gi|214043840|gb|EEB84478.1| DNA-binding protein HU [Roseobacter sp. GAI101]
Length = 91
Score = 77.1 bits (189), Expect = 7e-13, Method: Composition-based stats.
Identities = 21/92 (22%), Positives = 42/92 (45%), Gaps = 1/92 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ L+ +A++ + + + ++ + +T+ ++ GG V + G G R+R R+
Sbjct: 1 MTKTQLVAALAEEMGE-DKKTAGAALDAVCALITKEVSGGGAVTLPGIGKIYCRERPERM 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P + E V K LK+ +N
Sbjct: 60 VRNPATGEQFKKEADKVVKMTIAKALKDSVNE 91
>gi|330984063|gb|EGH82166.1| DNA-binding protein [Pseudomonas syringae pv. lachrymans str.
M301315]
Length = 90
Score = 77.1 bits (189), Expect = 7e-13, Method: Composition-based stats.
Identities = 26/87 (29%), Positives = 43/87 (49%), Gaps = 1/87 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K LI + K+ ++ +DVE ++N L E + + G+ + G G+F V +RAAR
Sbjct: 1 MTKKELIDALIAKS-GVDRKDVEAVINALPETIKDEIRATGQSAVYGLGTFKVSERAART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLK 87
R P I + V + K+L+
Sbjct: 60 GRNPSTGAAIEIPASKVVSVKLTKDLR 86
>gi|1280545|gb|AAC73085.1| histone-like protein HBbu [Borrelia burgdorferi]
gi|1280593|gb|AAC73106.1| histone-like protein HBbu [Borrelia burgdorferi]
Length = 108
Score = 77.1 bits (189), Expect = 7e-13, Method: Composition-based stats.
Identities = 32/94 (34%), Positives = 50/94 (53%), Gaps = 5/94 (5%)
Query: 2 IKSSLIGTIA----KKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRA 57
KS ++ I+ N KL + + +++ EE+ L + +E R FG+F VRKR
Sbjct: 10 TKSDIVDQISLNIRNNNLKLEKKCIRLVIDAFFEELKSNLCSNNVIEFRSFGTFEVRKRK 69
Query: 58 AR-LARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R AR P + + V + V +FR GK+LKER+
Sbjct: 70 GRLNARNPQTGEYVKVLDHHVAYFRPGKDLKERV 103
>gi|218258078|ref|ZP_03474505.1| hypothetical protein PRABACTJOHN_00158 [Parabacteroides johnsonii
DSM 18315]
gi|218225797|gb|EEC98447.1| hypothetical protein PRABACTJOHN_00158 [Parabacteroides johnsonii
DSM 18315]
Length = 91
Score = 77.1 bits (189), Expect = 7e-13, Method: Composition-based stats.
Identities = 26/92 (28%), Positives = 52/92 (56%), Gaps = 1/92 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M +S LI ++KK L+ +DV++ ++ + + + Q + G R+ + GFGSF R +++R
Sbjct: 1 MNRSQLINILSKKT-GLDKKDVKRTIDEMQKLIVQEVKEGQRICLHGFGSFKPRFQSSRP 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
AR P + + + + + F+ +L E +N
Sbjct: 60 ARNPKSGTAVQLSPRTIIHFKCAPHLLELMNK 91
>gi|313679460|ref|YP_004057199.1| bacterial nucleoid protein hbs [Oceanithermus profundus DSM
14977]
gi|313152175|gb|ADR36026.1| bacterial nucleoid protein Hbs [Oceanithermus profundus DSM
14977]
Length = 98
Score = 77.1 bits (189), Expect = 7e-13, Method: Composition-based stats.
Identities = 29/89 (32%), Positives = 47/89 (52%), Gaps = 1/89 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
KS L+ +A+ L +D + ++ L+E+ L +V++ GFG+F VRKR AR
Sbjct: 9 TKSDLVNHVAE-ITGLKKKDAKACIDTFLDEIATFLDRDYKVQLTGFGTFEVRKRKARTG 67
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERL 90
P + I + P F+ GK LKE++
Sbjct: 68 VKPGTTEKIKIPASKYPAFKPGKALKEKV 96
>gi|34762422|ref|ZP_00143422.1| DNA-binding protein HU [Fusobacterium nucleatum subsp. vincentii
ATCC 49256]
gi|237741782|ref|ZP_04572263.1| DNA-binding protein HU [Fusobacterium sp. 4_1_13]
gi|256845110|ref|ZP_05550568.1| integration host factor, alpha subunit [Fusobacterium sp.
3_1_36A2]
gi|294785602|ref|ZP_06750890.1| DNA-binding protein HU [Fusobacterium sp. 3_1_27]
gi|27887890|gb|EAA24958.1| DNA-binding protein HU [Fusobacterium nucleatum subsp. vincentii
ATCC 49256]
gi|229429430|gb|EEO39642.1| DNA-binding protein HU [Fusobacterium sp. 4_1_13]
gi|256718669|gb|EEU32224.1| integration host factor, alpha subunit [Fusobacterium sp.
3_1_36A2]
gi|294487316|gb|EFG34678.1| DNA-binding protein HU [Fusobacterium sp. 3_1_27]
Length = 91
Score = 77.1 bits (189), Expect = 7e-13, Method: Composition-based stats.
Identities = 26/91 (28%), Positives = 42/91 (46%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K + +K + EK V+++ M + L +G + I FG V +RA RL
Sbjct: 1 MTKKEFAKLLFEKGIFTTRTEAEKKVDIIFNSMEKILLDGENLSIINFGKLEVIERAPRL 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + + + ++ FR GK E+LN
Sbjct: 61 GRNPKTGEEVKIGKRKSIKFRPGKAFLEKLN 91
>gi|256830460|ref|YP_003159188.1| histone family protein DNA-binding protein [Desulfomicrobium
baculatum DSM 4028]
gi|256579636|gb|ACU90772.1| histone family protein DNA-binding protein [Desulfomicrobium
baculatum DSM 4028]
Length = 109
Score = 77.1 bits (189), Expect = 7e-13, Method: Composition-based stats.
Identities = 22/65 (33%), Positives = 33/65 (50%)
Query: 27 NMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLARAPLAQKVISVEEKMVPFFRAGKNL 86
+ +ALA G + + G GSFSV AAR+ R P + I++ + F+ K L
Sbjct: 44 KAFYAVIREALAKGQGISLPGLGSFSVMLHAARMGRNPRTGETIAIPARRRIHFKTCKGL 103
Query: 87 KERLN 91
+E LN
Sbjct: 104 RELLN 108
>gi|154149063|ref|YP_001406367.1| DNA-binding protein HU 1 (DNA-binding protein II) (HB)
[Campylobacter hominis ATCC BAA-381]
gi|153805072|gb|ABS52079.1| DNA-binding protein HU 1 (DNA-binding protein II) (HB)
[Campylobacter hominis ATCC BAA-381]
Length = 107
Score = 77.1 bits (189), Expect = 7e-13, Method: Composition-based stats.
Identities = 27/90 (30%), Positives = 43/90 (47%), Gaps = 1/90 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ I +A+K + ++V+ LE ++ L G + GFGSF + +RAAR
Sbjct: 1 MKKAEFIQAVAEKT-GSTKKVATEVVDSALEVISDVLVKGDSISFIGFGSFGLAERAARE 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
+ P + V F+ GK LKE +
Sbjct: 60 GKVPGTNRTYKSPATKVVKFKVGKQLKEAV 89
>gi|313184981|gb|ADR50055.1| histone-like protein HBbu [Borrelia burgdorferi]
Length = 108
Score = 77.1 bits (189), Expect = 7e-13, Method: Composition-based stats.
Identities = 32/95 (33%), Positives = 50/95 (52%), Gaps = 5/95 (5%)
Query: 1 MIKSSLIGTIA----KKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKR 56
+ KS ++ I+ N KL + + +++ EE+ L +E R FG+F VRKR
Sbjct: 9 ITKSDIVDQISLNITNNNLKLEKKYIRLVIDAFFEELKGNLCLNNVIEFRSFGTFEVRKR 68
Query: 57 AAR-LARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R AR P + + V + V +FR GK+LKER+
Sbjct: 69 KGRLNARNPQTGEYVKVLDHHVAYFRPGKDLKERV 103
>gi|254284406|ref|ZP_04959374.1| integration host factor, beta subunit [gamma proteobacterium
NOR51-B]
gi|219680609|gb|EED36958.1| integration host factor, beta subunit [gamma proteobacterium
NOR51-B]
Length = 73
Score = 77.1 bits (189), Expect = 7e-13, Method: Composition-based stats.
Identities = 29/66 (43%), Positives = 43/66 (65%)
Query: 26 VNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLARAPLAQKVISVEEKMVPFFRAGKN 85
+ ++++ M +ALA+G R+EIRGFGSFS+ R R R P + + K VP F+ GK
Sbjct: 1 MKLIIDHMAEALASGERIEIRGFGSFSLHYREPRKGRNPKTGDTVELSGKYVPHFKPGKE 60
Query: 86 LKERLN 91
L+ER+N
Sbjct: 61 LRERVN 66
>gi|229586413|ref|YP_002844914.1| DNA-binding protein HU [Rickettsia africae ESF-5]
gi|228021463|gb|ACP53171.1| DNA-binding protein HU [Rickettsia africae ESF-5]
Length = 138
Score = 77.1 bits (189), Expect = 7e-13, Method: Composition-based stats.
Identities = 28/99 (28%), Positives = 46/99 (46%), Gaps = 8/99 (8%)
Query: 1 MIKSSLIGTI--------AKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFS 52
M K+ I + + L + EK +N++L+ + A+ + + I GFGSF
Sbjct: 40 MNKTEFIAFMTDHGHNHKHASHKTLTKAEAEKALNLVLDSVISAIKSHHNINITGFGSFE 99
Query: 53 VRKRAARLARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
+ R AR R P + ++ P FRAG+ +KE N
Sbjct: 100 IHHRKAREGRNPKTGAKMQIDAYNQPTFRAGRKMKEACN 138
>gi|254454440|ref|ZP_05067877.1| DNA-binding protein HU [Octadecabacter antarcticus 238]
gi|198268846|gb|EDY93116.1| DNA-binding protein HU [Octadecabacter antarcticus 238]
Length = 96
Score = 77.1 bits (189), Expect = 7e-13, Method: Composition-based stats.
Identities = 21/91 (23%), Positives = 42/91 (46%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ L+ +A+ + + ++ ++ +T+ ++ GG V + G G R+R R+
Sbjct: 6 MTKTQLVAALAEDM-GTDKKSASAALDAMVGLITREVSGGGAVTLPGVGKIYCRERPERM 64
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + I + V K LK+ +N
Sbjct: 65 VRNPATGEQIKKDADKVVKMTIAKALKDSVN 95
>gi|99082641|ref|YP_614795.1| histone-like DNA-binding protein [Ruegeria sp. TM1040]
gi|99038921|gb|ABF65533.1| histone-like DNA-binding protein [Ruegeria sp. TM1040]
Length = 97
Score = 77.1 bits (189), Expect = 7e-13, Method: Composition-based stats.
Identities = 21/93 (22%), Positives = 40/93 (43%), Gaps = 1/93 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ L+ +A++ + + ++ + +T+ ++ GG V + G G R+R R
Sbjct: 5 MTKTQLVAALAEEMDS-DKKTAGAALDAVCNLITREVSGGGAVTLPGVGKIYCRERPERE 63
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSP 93
R P + E V K LK+ +N
Sbjct: 64 VRNPATGEKFMKEADKVVKMTIAKALKDSVNGE 96
>gi|229493365|ref|ZP_04387154.1| DNA-binding protein [Rhodococcus erythropolis SK121]
gi|229319681|gb|EEN85513.1| DNA-binding protein [Rhodococcus erythropolis SK121]
Length = 183
Score = 77.1 bits (189), Expect = 8e-13, Method: Composition-based stats.
Identities = 29/90 (32%), Positives = 46/90 (51%), Gaps = 1/90 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI + +K + + V +++ + +A+ G V I GFG F R+RAAR+
Sbjct: 1 MNKAELIDVLTEKL-GSDRRTATDAVEHVVDTIVRAVHRGESVTITGFGVFEQRRRAARV 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
AR P + + V+ VP FR G K +
Sbjct: 60 ARNPRTGETVKVKPTSVPAFRPGAQFKAVI 89
>gi|291294582|ref|YP_003505980.1| histone family protein DNA-binding protein [Meiothermus ruber DSM
1279]
gi|290469541|gb|ADD26960.1| histone family protein DNA-binding protein [Meiothermus ruber DSM
1279]
Length = 100
Score = 77.1 bits (189), Expect = 8e-13, Method: Composition-based stats.
Identities = 29/88 (32%), Positives = 44/88 (50%), Gaps = 1/88 (1%)
Query: 5 SLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLARAP 64
LI +A L +D + V+ L ++ +AL G +V++ GFG+F VR R AR P
Sbjct: 14 DLIDQVAA-TAGLKKKDAKAAVDAFLSKVEEALKAGNKVQLTGFGTFEVRSRKARTGVKP 72
Query: 65 LAQKVISVEEKMVPFFRAGKNLKERLNS 92
+ I + P F+ GK LKE +
Sbjct: 73 GTTQKIKIPASKYPAFKPGKALKETVKK 100
>gi|313185145|gb|ADR50137.1| histone-like protein HBbu [Borrelia burgdorferi]
Length = 108
Score = 77.1 bits (189), Expect = 8e-13, Method: Composition-based stats.
Identities = 32/95 (33%), Positives = 51/95 (53%), Gaps = 5/95 (5%)
Query: 1 MIKSSLIGTIA----KKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKR 56
+ KS ++ I+ N KL + + +++ EE+ L + +E R FG+F VRKR
Sbjct: 9 ITKSDIVDQISLNIKNNNLKLEKKYIRLVIDAFFEELKSNLCSNNVIEFRSFGTFEVRKR 68
Query: 57 AAR-LARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R AR P + + V + V +FR GK+LKER+
Sbjct: 69 KGRLNARNPQTGEYVKVLDHHVAYFRPGKDLKERV 103
>gi|51598493|ref|YP_072681.1| hbbU protein [Borrelia garinii PBi]
gi|219685851|ref|ZP_03540659.1| DNA-binding protein HU [Borrelia garinii Far04]
gi|3913405|sp|Q57153|DBH_BORGA RecName: Full=DNA-binding protein HBbu
gi|1280557|gb|AAC73080.1| histone-like protein HBbu [Borrelia garinii]
gi|1280559|gb|AAC73081.1| histone-like protein HBbu [Borrelia garinii PBi]
gi|1280563|gb|AAC73083.1| histone-like protein HBbu [Borrelia garinii]
gi|1280565|gb|AAC73084.1| histone-like protein HBbu [Borrelia garinii]
gi|1280567|gb|AAC73086.1| histone-like protein HBbu [Borrelia garinii]
gi|51573064|gb|AAU07089.1| hbbU protein [Borrelia garinii PBi]
gi|73762242|gb|AAZ83609.1| Hbb [Borrelia garinii]
gi|219672625|gb|EED29656.1| DNA-binding protein HU [Borrelia garinii Far04]
gi|313184979|gb|ADR50054.1| histone-like protein HBbu [Borrelia burgdorferi]
gi|313184983|gb|ADR50056.1| histone-like protein HBbu [Borrelia burgdorferi]
gi|313184985|gb|ADR50057.1| histone-like protein HBbu [Borrelia burgdorferi]
gi|313184987|gb|ADR50058.1| histone-like protein HBbu [Borrelia burgdorferi]
gi|313184989|gb|ADR50059.1| histone-like protein HBbu [Borrelia burgdorferi]
gi|313184991|gb|ADR50060.1| histone-like protein HBbu [Borrelia burgdorferi]
gi|313184993|gb|ADR50061.1| histone-like protein HBbu [Borrelia burgdorferi]
gi|313184995|gb|ADR50062.1| histone-like protein HBbu [Borrelia burgdorferi]
gi|313184997|gb|ADR50063.1| histone-like protein HBbu [Borrelia burgdorferi]
gi|313184999|gb|ADR50064.1| histone-like protein HBbu [Borrelia burgdorferi]
gi|313185001|gb|ADR50065.1| histone-like protein HBbu [Borrelia burgdorferi]
gi|313185003|gb|ADR50066.1| histone-like protein HBbu [Borrelia burgdorferi]
gi|313185005|gb|ADR50067.1| histone-like protein HBbu [Borrelia burgdorferi]
gi|313185007|gb|ADR50068.1| histone-like protein HBbu [Borrelia burgdorferi]
gi|313185009|gb|ADR50069.1| histone-like protein HBbu [Borrelia burgdorferi]
gi|313185011|gb|ADR50070.1| histone-like protein HBbu [Borrelia burgdorferi]
gi|313185013|gb|ADR50071.1| histone-like protein HBbu [Borrelia burgdorferi]
gi|313185015|gb|ADR50072.1| histone-like protein HBbu [Borrelia burgdorferi]
gi|313185017|gb|ADR50073.1| histone-like protein HBbu [Borrelia burgdorferi]
gi|313185019|gb|ADR50074.1| histone-like protein HBbu [Borrelia burgdorferi]
gi|313185023|gb|ADR50076.1| histone-like protein HBbu [Borrelia burgdorferi]
gi|313185025|gb|ADR50077.1| histone-like protein HBbu [Borrelia burgdorferi]
gi|313185027|gb|ADR50078.1| histone-like protein HBbu [Borrelia burgdorferi]
gi|313185031|gb|ADR50080.1| histone-like protein HBbu [Borrelia burgdorferi]
gi|313185035|gb|ADR50082.1| histone-like protein HBbu [Borrelia burgdorferi]
gi|313185037|gb|ADR50083.1| histone-like protein HBbu [Borrelia burgdorferi]
gi|313185039|gb|ADR50084.1| histone-like protein HBbu [Borrelia burgdorferi]
gi|313185041|gb|ADR50085.1| histone-like protein HBbu [Borrelia burgdorferi]
gi|313185043|gb|ADR50086.1| histone-like protein HBbu [Borrelia burgdorferi]
gi|313185045|gb|ADR50087.1| histone-like protein HBbu [Borrelia burgdorferi]
gi|313185047|gb|ADR50088.1| histone-like protein HBbu [Borrelia burgdorferi]
gi|313185049|gb|ADR50089.1| histone-like protein HBbu [Borrelia burgdorferi]
gi|313185051|gb|ADR50090.1| histone-like protein HBbu [Borrelia burgdorferi]
gi|313185053|gb|ADR50091.1| histone-like protein HBbu [Borrelia burgdorferi]
gi|313185055|gb|ADR50092.1| histone-like protein HBbu [Borrelia burgdorferi]
gi|313185057|gb|ADR50093.1| histone-like protein HBbu [Borrelia burgdorferi]
gi|313185059|gb|ADR50094.1| histone-like protein HBbu [Borrelia burgdorferi]
gi|313185061|gb|ADR50095.1| histone-like protein HBbu [Borrelia burgdorferi]
gi|313185063|gb|ADR50096.1| histone-like protein HBbu [Borrelia burgdorferi]
gi|313185065|gb|ADR50097.1| histone-like protein HBbu [Borrelia burgdorferi]
gi|313185067|gb|ADR50098.1| histone-like protein HBbu [Borrelia burgdorferi]
gi|313185069|gb|ADR50099.1| histone-like protein HBbu [Borrelia burgdorferi]
gi|313185071|gb|ADR50100.1| histone-like protein HBbu [Borrelia burgdorferi]
gi|313185073|gb|ADR50101.1| histone-like protein HBbu [Borrelia burgdorferi]
gi|313185075|gb|ADR50102.1| histone-like protein HBbu [Borrelia burgdorferi]
gi|313185077|gb|ADR50103.1| histone-like protein HBbu [Borrelia burgdorferi]
gi|313185079|gb|ADR50104.1| histone-like protein HBbu [Borrelia burgdorferi]
gi|313185081|gb|ADR50105.1| histone-like protein HBbu [Borrelia burgdorferi]
gi|313185083|gb|ADR50106.1| histone-like protein HBbu [Borrelia burgdorferi]
gi|313185085|gb|ADR50107.1| histone-like protein HBbu [Borrelia burgdorferi]
gi|313185087|gb|ADR50108.1| histone-like protein HBbu [Borrelia burgdorferi]
gi|313185089|gb|ADR50109.1| histone-like protein HBbu [Borrelia burgdorferi]
gi|313185091|gb|ADR50110.1| histone-like protein HBbu [Borrelia burgdorferi]
gi|313185093|gb|ADR50111.1| histone-like protein HBbu [Borrelia burgdorferi]
gi|313185095|gb|ADR50112.1| histone-like protein HBbu [Borrelia burgdorferi]
gi|313185097|gb|ADR50113.1| histone-like protein HBbu [Borrelia burgdorferi]
gi|313185105|gb|ADR50117.1| histone-like protein HBbu [Borrelia burgdorferi]
gi|313185107|gb|ADR50118.1| histone-like protein HBbu [Borrelia burgdorferi]
gi|313185109|gb|ADR50119.1| histone-like protein HBbu [Borrelia burgdorferi]
gi|313185111|gb|ADR50120.1| histone-like protein HBbu [Borrelia burgdorferi]
gi|313185113|gb|ADR50121.1| histone-like protein HBbu [Borrelia burgdorferi]
gi|313185115|gb|ADR50122.1| histone-like protein HBbu [Borrelia burgdorferi]
gi|313185117|gb|ADR50123.1| histone-like protein HBbu [Borrelia burgdorferi]
gi|313185119|gb|ADR50124.1| histone-like protein HBbu [Borrelia burgdorferi]
gi|313185121|gb|ADR50125.1| histone-like protein HBbu [Borrelia burgdorferi]
Length = 108
Score = 77.1 bits (189), Expect = 8e-13, Method: Composition-based stats.
Identities = 32/95 (33%), Positives = 50/95 (52%), Gaps = 5/95 (5%)
Query: 1 MIKSSLIGTIA----KKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKR 56
+ KS ++ I+ N KL + + +++ EE+ L +E R FG+F VRKR
Sbjct: 9 ITKSDIVDQISLNIRNNNLKLEKKYIRLVIDAFFEELKGNLCLNNVIEFRSFGTFEVRKR 68
Query: 57 AAR-LARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R AR P + + V + V +FR GK+LKER+
Sbjct: 69 KGRLNARNPQTGEYVKVLDHHVAYFRPGKDLKERV 103
>gi|157364264|ref|YP_001471031.1| histone family protein DNA-binding protein [Thermotoga lettingae
TMO]
gi|157314868|gb|ABV33967.1| histone family protein DNA-binding protein [Thermotoga lettingae
TMO]
Length = 90
Score = 77.1 bits (189), Expect = 8e-13, Method: Composition-based stats.
Identities = 38/91 (41%), Positives = 58/91 (63%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K L+ ++KK L +DV+K+V+M+ + +T ALA G +V++ GFGSF VRK A R
Sbjct: 1 MNKKELVDKVSKK-AGLKKKDVKKVVDMVFDTVTDALAKGEKVQLVGFGSFEVRKAAQRK 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
P +K I++ + VP F+ GK LKE++
Sbjct: 60 GVNPQTKKPITIPSRKVPKFKPGKALKEKVK 90
>gi|103488110|ref|YP_617671.1| histone-like DNA-binding protein [Sphingopyxis alaskensis RB2256]
gi|98978187|gb|ABF54338.1| histone-like DNA-binding protein [Sphingopyxis alaskensis RB2256]
Length = 91
Score = 77.1 bits (189), Expect = 8e-13, Method: Composition-based stats.
Identities = 26/91 (28%), Positives = 40/91 (43%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M S L +A N ++ D K V+ + + A A G + + GFG F V+ AR
Sbjct: 1 MNNSDLADALAASN-GISKSDARKYVDGVFAAIADAAAKGEEISLNGFGKFKVKDSPARE 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + I + F K +K++LN
Sbjct: 60 GRNPSTGETIQIAASKKLTFAPAKAVKDKLN 90
>gi|308271404|emb|CBX28012.1| DNA-binding protein HU-alpha [uncultured Desulfobacterium sp.]
Length = 88
Score = 77.1 bits (189), Expect = 8e-13, Method: Composition-based stats.
Identities = 24/89 (26%), Positives = 45/89 (50%), Gaps = 2/89 (2%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGG-RVEIRGFGSFSVRKRAAR 59
M K+ L+ A ++ ++ +N +++ + + L +V + GFG+F+ +R AR
Sbjct: 1 MTKAELVDK-AAEDAGISKTAAAATLNSIMDSIAKTLKKKDGKVTLVGFGTFTKVRRKAR 59
Query: 60 LARAPLAQKVISVEEKMVPFFRAGKNLKE 88
R P + I ++ V FR GK L+E
Sbjct: 60 KGRNPQTGEPIKIKACTVVKFRPGKKLRE 88
>gi|319405751|emb|CBI79374.1| integration host factor alpha subunit [Bartonella sp. AR 15-3]
Length = 103
Score = 77.1 bits (189), Expect = 8e-13, Method: Composition-based stats.
Identities = 24/89 (26%), Positives = 47/89 (52%), Gaps = 1/89 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
++ L G + +K L++ + +V ++L E+ +L G V++ F +F VR ++ R+
Sbjct: 7 TRADLAGAVCRK-VGLSHTESADLVELVLGEICNSLVKGEMVKLSSFATFQVRDKSERVG 65
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P S+ + V F+A LK+R+
Sbjct: 66 RNPKTGVEASIPPRRVVTFKAANVLKKRI 94
>gi|220914453|ref|YP_002489762.1| histone family protein DNA-binding protein [Arthrobacter
chlorophenolicus A6]
gi|219861331|gb|ACL41673.1| histone family protein DNA-binding protein [Arthrobacter
chlorophenolicus A6]
Length = 95
Score = 77.1 bits (189), Expect = 8e-13, Method: Composition-based stats.
Identities = 22/93 (23%), Positives = 40/93 (43%), Gaps = 1/93 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
+S L+ +A K + V +++ L E ++A G ++ I G+ + RAAR
Sbjct: 4 NRSELVAEVAGK-AGTSQAAVNTVLDALFEVFETSVAAGEKITIPGWLAVERTDRAARTG 62
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLNSPD 94
R P + I + AG LK +++
Sbjct: 63 RNPQTGETIQIAAGHSVKLTAGSKLKAAVSNKK 95
>gi|125717537|ref|YP_001034670.1| DNA-binding protein HU [Streptococcus sanguinis SK36]
gi|323352711|ref|ZP_08087681.1| DNA-binding protein HU [Streptococcus sanguinis VMC66]
gi|125497454|gb|ABN44120.1| DNA-binding protein HU, putative [Streptococcus sanguinis SK36]
gi|322121747|gb|EFX93493.1| DNA-binding protein HU [Streptococcus sanguinis VMC66]
gi|324990641|gb|EGC22577.1| DNA-binding protein HU [Streptococcus sanguinis SK353]
gi|324993379|gb|EGC25299.1| DNA-binding protein HU [Streptococcus sanguinis SK405]
gi|324995308|gb|EGC27220.1| DNA-binding protein HU [Streptococcus sanguinis SK678]
gi|325688248|gb|EGD30267.1| DNA-binding protein HU [Streptococcus sanguinis SK72]
gi|325690171|gb|EGD32175.1| DNA-binding protein HU [Streptococcus sanguinis SK115]
gi|325694095|gb|EGD36013.1| DNA-binding protein HU [Streptococcus sanguinis SK150]
gi|325697097|gb|EGD38984.1| DNA-binding protein HU [Streptococcus sanguinis SK160]
gi|327458737|gb|EGF05085.1| DNA-binding protein HU [Streptococcus sanguinis SK1057]
gi|327461654|gb|EGF07985.1| DNA-binding protein HU [Streptococcus sanguinis SK1]
gi|327468999|gb|EGF14471.1| DNA-binding protein HU [Streptococcus sanguinis SK330]
gi|327473374|gb|EGF18794.1| DNA-binding protein HU [Streptococcus sanguinis SK408]
gi|327489507|gb|EGF21300.1| DNA-binding protein HU [Streptococcus sanguinis SK1058]
gi|328945552|gb|EGG39703.1| DNA-binding protein HU [Streptococcus sanguinis SK1087]
gi|332361741|gb|EGJ39545.1| DNA-binding protein HU [Streptococcus sanguinis SK1056]
gi|332362906|gb|EGJ40699.1| DNA-binding protein HU [Streptococcus sanguinis SK49]
gi|332363445|gb|EGJ41228.1| DNA-binding protein HU [Streptococcus sanguinis SK355]
gi|332366058|gb|EGJ43814.1| DNA-binding protein HU [Streptococcus sanguinis SK1059]
Length = 91
Score = 77.1 bits (189), Expect = 8e-13, Method: Composition-based stats.
Identities = 33/90 (36%), Positives = 51/90 (56%), Gaps = 1/90 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K LI +A+ +L +D V+ + +T+ L+ G +V++ GFG+F VR+RAAR
Sbjct: 3 NKQDLIAKVAEAT-ELTKKDSAAAVDAVFAAVTEYLSKGEKVQLIGFGNFEVRERAARKG 61
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P K I + VP F+AGK LK+ +
Sbjct: 62 RNPQTGKEIKIAASKVPAFKAGKALKDAVK 91
>gi|119953028|ref|YP_945237.1| DNA-binding protein HbbU [Borrelia turicatae 91E135]
gi|119861799|gb|AAX17567.1| DNA-binding protein HbbU [Borrelia turicatae 91E135]
Length = 108
Score = 77.1 bits (189), Expect = 8e-13, Method: Composition-based stats.
Identities = 32/94 (34%), Positives = 52/94 (55%), Gaps = 5/94 (5%)
Query: 2 IKSSLIGTIA----KKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRA 57
KS ++ I+ N KL + + +V+ EE+ +L +E R FG+F +RKR
Sbjct: 10 TKSDIVNQISLNIKNSNEKLEKKYIRLVVDAFFEELKNSLCLNNVIEFRSFGTFELRKRK 69
Query: 58 AR-LARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R AR P + ++V++ V +FR GK+LKER+
Sbjct: 70 GRQNARNPQTGEYVNVDDHHVAYFRPGKDLKERV 103
>gi|218249932|ref|YP_002374755.1| small DNA-binding protein Hbb [Borrelia burgdorferi ZS7]
gi|223888785|ref|ZP_03623376.1| DNA-binding protein HU [Borrelia burgdorferi 64b]
gi|226321550|ref|ZP_03797076.1| DNA-binding protein HU [Borrelia burgdorferi Bol26]
gi|134104949|pdb|2NP2|A Chain A, Hbb-Dna Complex
gi|134104950|pdb|2NP2|B Chain B, Hbb-Dna Complex
gi|1280531|gb|AAC73070.1| histone-like protein HBbu [Borrelia burgdorferi]
gi|1280535|gb|AAC73072.1| histone-like protein HBbu [Borrelia burgdorferi]
gi|1372991|gb|AAB41460.1| Hbb [Borrelia burgdorferi]
gi|1372994|gb|AAB41461.1| Hbb [Borrelia burgdorferi]
gi|73762240|gb|AAZ83608.1| Hbb [Borrelia burgdorferi]
gi|89145706|gb|ABD62042.1| Hbb [Borrelia burgdorferi 297]
gi|89145708|gb|ABD62043.1| Hbb [Borrelia burgdorferi]
gi|218165120|gb|ACK75181.1| small DNA-binding protein Hbb [Borrelia burgdorferi ZS7]
gi|223885601|gb|EEF56700.1| DNA-binding protein HU [Borrelia burgdorferi 64b]
gi|226232739|gb|EEH31492.1| DNA-binding protein HU [Borrelia burgdorferi Bol26]
Length = 108
Score = 77.1 bits (189), Expect = 8e-13, Method: Composition-based stats.
Identities = 33/94 (35%), Positives = 50/94 (53%), Gaps = 5/94 (5%)
Query: 2 IKSSLIGTIA----KKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRA 57
KS ++ IA N KL + + +++ EE+ L + +E R FG+F VRKR
Sbjct: 10 TKSDIVDQIALNIKNNNLKLEKKYIRLVIDAFFEELKSNLCSNNVIEFRSFGTFEVRKRK 69
Query: 58 AR-LARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R AR P + + V + V +FR GK+LKER+
Sbjct: 70 GRLNARNPQTGEYVKVLDHHVAYFRPGKDLKERV 103
>gi|198283417|ref|YP_002219738.1| histone family protein DNA-binding protein [Acidithiobacillus
ferrooxidans ATCC 53993]
gi|198247938|gb|ACH83531.1| histone family protein DNA-binding protein [Acidithiobacillus
ferrooxidans ATCC 53993]
Length = 107
Score = 77.1 bits (189), Expect = 8e-13, Method: Composition-based stats.
Identities = 21/92 (22%), Positives = 41/92 (44%), Gaps = 1/92 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
+ K L + + + E+ V+ E M A+ +++ GFG F+VR +++R
Sbjct: 3 ITKKDLANHLWE-VGGWTHPQAEQFVDAFFEHMRAAIITESELKLSGFGRFTVRAKSSRP 61
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P + ++ + V F A L+ + N
Sbjct: 62 GRNPKTGQPYEIKARRVVTFSASALLRAKSNQ 93
>gi|256394110|ref|YP_003115674.1| histone family protein DNA-binding protein [Catenulispora
acidiphila DSM 44928]
gi|256360336|gb|ACU73833.1| histone family protein DNA-binding protein [Catenulispora
acidiphila DSM 44928]
Length = 167
Score = 76.7 bits (188), Expect = 9e-13, Method: Composition-based stats.
Identities = 28/89 (31%), Positives = 45/89 (50%), Gaps = 1/89 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ L +A++ D + V+ + + + + +A G RV+I GFG+F +RAARL
Sbjct: 3 NKADLAAEVAEQMSG-AEPDARQYVDAVFDVIMRHVAAGERVQILGFGTFDSVQRAARLG 61
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P I V P F AG+ + R+
Sbjct: 62 RNPQTGAAIQVPAGTSPRFHAGQTFRTRV 90
>gi|170723403|ref|YP_001751091.1| histone family protein DNA-binding protein [Pseudomonas putida
W619]
gi|169761406|gb|ACA74722.1| histone family protein DNA-binding protein [Pseudomonas putida
W619]
Length = 93
Score = 76.7 bits (188), Expect = 9e-13, Method: Composition-based stats.
Identities = 24/91 (26%), Positives = 37/91 (40%), Gaps = 1/91 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K LI IA+ + + + L + + L NG + + G G V +R AR
Sbjct: 4 TKDQLIADIAESIAQ-PKATAKNALEQLGQIVADQLENGAEITLPGIGKLKVSERPARTG 62
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P I + K V F K+L + +N
Sbjct: 63 RNPSTGAAIEIAAKKVVKFVPAKSLTDAINK 93
>gi|254461410|ref|ZP_05074826.1| DNA-binding protein HU [Rhodobacterales bacterium HTCC2083]
gi|206677999|gb|EDZ42486.1| DNA-binding protein HU [Rhodobacteraceae bacterium HTCC2083]
Length = 95
Score = 76.7 bits (188), Expect = 9e-13, Method: Composition-based stats.
Identities = 21/91 (23%), Positives = 42/91 (46%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ L+ +A++ + + ++ + +T+ ++ GG V + G G R+R R+
Sbjct: 5 MTKTQLVAALAEEM-GADKKASGAALDAVCALITREVSGGGAVTLPGVGKIYCRERPERM 63
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + I + V K LK+ +N
Sbjct: 64 VRNPATGEQIKKDADKVVKMTIAKALKDSVN 94
>gi|83942118|ref|ZP_00954580.1| DNA-binding protein HU [Sulfitobacter sp. EE-36]
gi|83953173|ref|ZP_00961895.1| DNA-binding protein HU [Sulfitobacter sp. NAS-14.1]
gi|83842141|gb|EAP81309.1| DNA-binding protein HU [Sulfitobacter sp. NAS-14.1]
gi|83847938|gb|EAP85813.1| DNA-binding protein HU [Sulfitobacter sp. EE-36]
Length = 91
Score = 76.7 bits (188), Expect = 9e-13, Method: Composition-based stats.
Identities = 20/92 (21%), Positives = 42/92 (45%), Gaps = 1/92 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ L+ +A++ + + + ++ + +T+ ++ GG V + G G R+R R+
Sbjct: 1 MTKTQLVAALAEEMGE-DKKTASAALDAVCALITKEVSGGGAVTLPGIGKIYCRERPERM 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P + + V K LK+ +N
Sbjct: 60 VRNPATGEQFKKDADKVVKMTIAKALKDSVNE 91
>gi|149913075|ref|ZP_01901609.1| hypothetical protein RAZWK3B_03765 [Roseobacter sp. AzwK-3b]
gi|149813481|gb|EDM73307.1| hypothetical protein RAZWK3B_03765 [Roseobacter sp. AzwK-3b]
Length = 95
Score = 76.7 bits (188), Expect = 9e-13, Method: Composition-based stats.
Identities = 22/91 (24%), Positives = 41/91 (45%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ L+ +A + + + ++ + +T+ ++ GG V + G G R+R R+
Sbjct: 5 MTKTQLVAALADEM-GTDKKTAGTALDAVTAIITREVSGGGAVTLPGVGKIYCRERPERM 63
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + I E V K LK+ +N
Sbjct: 64 VRNPATGEQIKKEADKVVKMTIAKALKDSVN 94
>gi|313185103|gb|ADR50116.1| histone-like protein HBbu [Borrelia burgdorferi]
Length = 108
Score = 76.7 bits (188), Expect = 9e-13, Method: Composition-based stats.
Identities = 32/94 (34%), Positives = 49/94 (52%), Gaps = 5/94 (5%)
Query: 2 IKSSLIGTIA----KKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRA 57
KS ++ I+ N KL + + +++ EE+ L +E R FG+F VRKR
Sbjct: 10 TKSDIVDQISLNIRNNNLKLEKKYIRLVIDAFFEELKGNLCLNNVIEFRSFGTFEVRKRK 69
Query: 58 AR-LARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R AR P + + V + V +FR GK+LKER+
Sbjct: 70 GRLNARNPQTGEYVKVLDHHVAYFRPGKDLKERV 103
>gi|308274087|emb|CBX30686.1| DNA-binding protein HU-beta [uncultured Desulfobacterium sp.]
Length = 100
Score = 76.7 bits (188), Expect = 9e-13, Method: Composition-based stats.
Identities = 32/91 (35%), Positives = 49/91 (53%), Gaps = 2/91 (2%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALA-NGGRVEIRGFGSFSVRKRAAR 59
M K+ L+ IA + K+ ++ + +T+AL G+V + GFG+FS KRAAR
Sbjct: 11 MTKAELVDAIAA-DAKITKTAAVAALDSFTKNVTKALKSKDGKVTLVGFGTFSKAKRAAR 69
Query: 60 LARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P I ++ + V F+AGK LKE +
Sbjct: 70 KGRNPQTGAEIKIKARNVVKFKAGKKLKEAV 100
>gi|34556922|ref|NP_906737.1| putative DNA-binding protein II (HB) [Wolinella succinogenes DSM
1740]
gi|34482637|emb|CAE09637.1| PUTATIVE DNA-BINDING PROTEIN II (HB) [Wolinella succinogenes]
Length = 91
Score = 76.7 bits (188), Expect = 9e-13, Method: Composition-based stats.
Identities = 36/90 (40%), Positives = 50/90 (55%), Gaps = 1/90 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ I +A K L+ +D E ++ +LE +T+ALA G V GFG FS +RAAR
Sbjct: 1 MKKAEFIDAVALK-AGLSKKDSELALDSILEVLTEALAQGKSVNFIGFGGFSTIERAARK 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
A+ P KV+ V F+ GK LKE +
Sbjct: 60 AKVPGTDKVVDVPAVRAVKFKVGKQLKEAV 89
>gi|329889489|ref|ZP_08267832.1| integration host factor subunit alpha [Brevundimonas diminuta
ATCC 11568]
gi|328844790|gb|EGF94354.1| integration host factor subunit alpha [Brevundimonas diminuta
ATCC 11568]
Length = 91
Score = 76.7 bits (188), Expect = 9e-13, Method: Composition-based stats.
Identities = 23/83 (27%), Positives = 44/83 (53%), Gaps = 1/83 (1%)
Query: 8 GTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLARAPLAQ 67
+ ++ L+ Q+ +V L+ + +L G V++ GFG F VR++ AR+ R P
Sbjct: 3 EAVHEE-VGLSRQECSGLVERTLDLIVDSLEQGETVKLSGFGVFQVREKRARMGRNPKTG 61
Query: 68 KVISVEEKMVPFFRAGKNLKERL 90
+ ++ + V FRA + +K R+
Sbjct: 62 EPAAINPRRVISFRASQIMKSRV 84
>gi|283852456|ref|ZP_06369725.1| histone family protein DNA-binding protein [Desulfovibrio sp.
FW1012B]
gi|303249426|ref|ZP_07335647.1| histone family protein DNA-binding protein [Desulfovibrio
fructosovorans JJ]
gi|283572194|gb|EFC20185.1| histone family protein DNA-binding protein [Desulfovibrio sp.
FW1012B]
gi|302489168|gb|EFL49139.1| histone family protein DNA-binding protein [Desulfovibrio
fructosovorans JJ]
Length = 100
Score = 76.7 bits (188), Expect = 9e-13, Method: Composition-based stats.
Identities = 25/93 (26%), Positives = 45/93 (48%), Gaps = 1/93 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ ++ I +K + N +V+ +V+ LLE M Q++ + + GFG F + AR
Sbjct: 7 TKADIVDYIYEKTER-NRAEVKVLVDHLLELMKQSIKKDHSLLVSGFGKFESYDKKARKG 65
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLNSPD 94
R P + I + + V FR + + LN +
Sbjct: 66 RNPQTNESIMLPPRKVVVFRLSRKFRAELNPDE 98
>gi|315419711|gb|ADU15825.1| histone-like protein [Streptococcus parasanguinis]
Length = 91
Score = 76.7 bits (188), Expect = 1e-12, Method: Composition-based stats.
Identities = 32/90 (35%), Positives = 51/90 (56%), Gaps = 1/90 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K LI +A+ +L +D V+ + +++ L+ G +V++ GFG+F VR+RAAR
Sbjct: 3 NKQDLIAKVAEAT-ELTKKDSAAAVDAVFAAVSEYLSKGEKVQLIGFGNFEVRERAARKG 61
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P K I + VP F+AGK LK+ +
Sbjct: 62 RNPQTGKEIEIAASKVPTFKAGKALKDVIK 91
>gi|229496570|ref|ZP_04390284.1| DNA-binding protein HU [Porphyromonas endodontalis ATCC 35406]
gi|229316467|gb|EEN82386.1| DNA-binding protein HU [Porphyromonas endodontalis ATCC 35406]
Length = 96
Score = 76.7 bits (188), Expect = 1e-12, Method: Composition-based stats.
Identities = 29/90 (32%), Positives = 50/90 (55%), Gaps = 1/90 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ L+ IAK+ L+ +V + V ++ + +A G + +RGFGSF +R+RA ++
Sbjct: 1 MTKADLVAQIAKRT-GLDRDEVLRTVETFMDVVKDEMAQGNNIYLRGFGSFVIRERAQKI 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
AR ++ I + + VP F+ K E L
Sbjct: 60 ARNISKKEAIIIPKHNVPSFKPSKVFSEML 89
>gi|163737907|ref|ZP_02145323.1| histone-like DNA-binding protein [Phaeobacter gallaeciensis
BS107]
gi|163743911|ref|ZP_02151282.1| DNA-binding protein HU [Phaeobacter gallaeciensis 2.10]
gi|161382852|gb|EDQ07250.1| DNA-binding protein HU [Phaeobacter gallaeciensis 2.10]
gi|161388523|gb|EDQ12876.1| histone-like DNA-binding protein [Phaeobacter gallaeciensis
BS107]
Length = 95
Score = 76.7 bits (188), Expect = 1e-12, Method: Composition-based stats.
Identities = 21/91 (23%), Positives = 41/91 (45%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ L+ +A++ + + ++ + +T+ ++ GG V + G G R+R R
Sbjct: 5 MTKTQLVAALAEEMDS-DKKAAGAALDAVCALITREVSGGGAVTLPGVGKIYCRERPERE 63
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + + E V K LK+ +N
Sbjct: 64 VRNPATGEKFTKEADKVVKMTIAKALKDSVN 94
>gi|319407314|emb|CBI80955.1| integration host factor alpha subunit [Bartonella sp. 1-1C]
Length = 103
Score = 76.7 bits (188), Expect = 1e-12, Method: Composition-based stats.
Identities = 24/89 (26%), Positives = 48/89 (53%), Gaps = 1/89 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
++ L G + +K L++ + +V ++L+E+ +L G V++ F +F VR ++ R+
Sbjct: 7 TRADLAGAVCRK-VGLSHTESADLVELVLDEICNSLVRGEMVKLSSFATFQVRDKSERVG 65
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P S+ + V F+A LK+R+
Sbjct: 66 RNPKTGVEASIPPRRVITFKAANVLKKRI 94
>gi|312140481|ref|YP_004007817.1| histone-like bacterial DNA-binding protein hupb [Rhodococcus equi
103S]
gi|325675901|ref|ZP_08155585.1| histone family DNA-binding protein [Rhodococcus equi ATCC 33707]
gi|311889820|emb|CBH49137.1| histone-like bacterial DNA-binding protein HupB [Rhodococcus equi
103S]
gi|325553872|gb|EGD23550.1| histone family DNA-binding protein [Rhodococcus equi ATCC 33707]
Length = 242
Score = 76.7 bits (188), Expect = 1e-12, Method: Composition-based stats.
Identities = 29/90 (32%), Positives = 47/90 (52%), Gaps = 1/90 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI + +K + + + V +++ + +A+ G V I GFG F R+RAAR+
Sbjct: 1 MNKAELIDVLTEKL-GTDRRTASEAVEHVVDTIVRAVHAGESVTITGFGVFEQRRRAARV 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
AR P + + V+ VP FR G K +
Sbjct: 60 ARNPRTGETVKVKPTSVPAFRPGAQFKALI 89
>gi|291280770|ref|YP_003497604.1| DNA-binding protein HU [Deferribacter desulfuricans SSM1]
gi|290755472|dbj|BAI81848.1| DNA-binding protein HU [Deferribacter desulfuricans SSM1]
Length = 90
Score = 76.7 bits (188), Expect = 1e-12, Method: Composition-based stats.
Identities = 23/91 (25%), Positives = 44/91 (48%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K +I + ++ + +DV++++N E + + + G +V + G F +R+AR
Sbjct: 1 MKKEEIIALLVERT-NMRKKDVKELLNAFEEIVLEGVKEGKKVPLGALGYFKKVERSART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
P + I + +VP F GK KE +
Sbjct: 60 GHNPKTGEKIQIPATVVPKFVPGKKFKEAVK 90
>gi|157164945|ref|YP_001466788.1| DNA-binding protein HU 1 (DNA-binding protein II; HB)
[Campylobacter concisus 13826]
gi|157101488|gb|EAT97269.2| DNA-binding protein, HU family [Campylobacter concisus 13826]
Length = 100
Score = 76.7 bits (188), Expect = 1e-12, Method: Composition-based stats.
Identities = 34/88 (38%), Positives = 45/88 (51%), Gaps = 1/88 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ I +A K L+ +D K+V+ LE + L G + GFG+F RAAR
Sbjct: 1 MKKAEFIQAVADK-AGLSKKDTLKVVDATLETIQAVLEKGDTISFIGFGTFGTADRAARK 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKE 88
AR P +KVI V F+ GK LKE
Sbjct: 60 ARVPGTKKVIDVPASKAVKFKVGKKLKE 87
>gi|152986799|ref|YP_001346553.1| putative DNA binding protein [Pseudomonas aeruginosa PA7]
gi|150961957|gb|ABR83982.1| probable DNA binding protein [Pseudomonas aeruginosa PA7]
Length = 93
Score = 76.7 bits (188), Expect = 1e-12, Method: Composition-based stats.
Identities = 27/90 (30%), Positives = 38/90 (42%), Gaps = 1/90 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K LI IA+ V ++ L + + AL N G + + G G V +R AR
Sbjct: 4 TKDQLIQDIAEAI-DAPKTTVRSALDQLTDIVKDALENDGEITLPGIGKLKVSERPARTG 62
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P K I + K V F K L + +N
Sbjct: 63 RNPQTGKAIEIAAKRVAKFVPAKALTDAIN 92
>gi|219684742|ref|ZP_03539685.1| DNA-binding protein HU [Borrelia garinii PBr]
gi|219672104|gb|EED29158.1| DNA-binding protein HU [Borrelia garinii PBr]
gi|313185033|gb|ADR50081.1| histone-like protein HBbu [Borrelia burgdorferi]
Length = 108
Score = 76.7 bits (188), Expect = 1e-12, Method: Composition-based stats.
Identities = 32/94 (34%), Positives = 49/94 (52%), Gaps = 5/94 (5%)
Query: 2 IKSSLIGTIA----KKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRA 57
KS ++ I+ N KL + + +++ EE+ L +E R FG+F VRKR
Sbjct: 10 TKSDIVDQISLNIRNNNLKLEKKYIRLVIDAFFEELKGNLCLNNVIEFRSFGTFEVRKRK 69
Query: 58 AR-LARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R AR P + + V + V +FR GK+LKER+
Sbjct: 70 GRLNARNPQTGEYVKVLDHHVAYFRPGKDLKERV 103
>gi|117928796|ref|YP_873347.1| histone family protein DNA-binding protein [Acidothermus
cellulolyticus 11B]
gi|117649259|gb|ABK53361.1| histone family protein DNA-binding protein [Acidothermus
cellulolyticus 11B]
Length = 163
Score = 76.7 bits (188), Expect = 1e-12, Method: Composition-based stats.
Identities = 31/90 (34%), Positives = 50/90 (55%), Gaps = 2/90 (2%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI +A + + + V +++ +T+ +A G +V I GFG F +RAAR+
Sbjct: 1 MNKAELITAVAARIGD--KKTASEAVEAVIDTITRTVARGEKVAITGFGIFEKVERAARM 58
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
AR P + + V++ VP FRAG LK +
Sbjct: 59 ARNPATGERVRVKKTSVPKFRAGTRLKGVV 88
>gi|163787183|ref|ZP_02181630.1| DNA-binding protein HU [Flavobacteriales bacterium ALC-1]
gi|159877071|gb|EDP71128.1| DNA-binding protein HU [Flavobacteriales bacterium ALC-1]
Length = 96
Score = 76.7 bits (188), Expect = 1e-12, Method: Composition-based stats.
Identities = 28/93 (30%), Positives = 45/93 (48%), Gaps = 1/93 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ L+ I+ K + DV+ V +EE+ +L +G V +RGFGSF ++ RA +
Sbjct: 1 MTKADLVAKISDKL-GIEKGDVQATVETFMEEVKTSLESGDNVYLRGFGSFIIKTRAEKT 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSP 93
R I + +P F+ K E + S
Sbjct: 60 GRNISKNTTIKIPAHNIPAFKPAKVFLEGVKSN 92
>gi|3913404|sp|Q45722|DBH_BORTU RecName: Full=DNA-binding protein HBbu
gi|1280607|gb|AAC73104.1| histone-like protein HBbu [Borrelia turicatae]
Length = 108
Score = 76.7 bits (188), Expect = 1e-12, Method: Composition-based stats.
Identities = 32/94 (34%), Positives = 52/94 (55%), Gaps = 5/94 (5%)
Query: 2 IKSSLIGTIA----KKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRA 57
KS ++ I+ N KL + + +V+ EE+ +L +E R FG+F +RKR
Sbjct: 10 TKSDIVNQISLNIKNSNEKLEKKYIRLVVDAFFEELKNSLCLNNVIEFRSFGTFELRKRK 69
Query: 58 AR-LARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R AR P + ++V++ V +FR GK+LKER+
Sbjct: 70 GRQNARNPQTGEYVNVDDHHVAYFRPGKDLKERV 103
>gi|224015517|ref|XP_002297410.1| predicted protein [Thalassiosira pseudonana CCMP1335]
gi|220967911|gb|EED86280.1| predicted protein [Thalassiosira pseudonana CCMP1335]
Length = 85
Score = 76.7 bits (188), Expect = 1e-12, Method: Composition-based stats.
Identities = 25/86 (29%), Positives = 42/86 (48%), Gaps = 1/86 (1%)
Query: 3 KSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLAR 62
K+ + +A+K + + E ++ +L + +A G R+ + GFG+F + RAAR R
Sbjct: 1 KAEFVSAVAEKT-GMTKAESEVALSAVLNVIATEVAAGKRISLPGFGTFKLNYRAARKGR 59
Query: 63 APLAQKVISVEEKMVPFFRAGKNLKE 88
P I ++ P F A K KE
Sbjct: 60 NPKTGDEIDIKASYSPSFSASKTFKE 85
>gi|124007135|sp|Q4UKH2|DBH_RICFE RecName: Full=DNA-binding protein HU
Length = 99
Score = 76.7 bits (188), Expect = 1e-12, Method: Composition-based stats.
Identities = 29/99 (29%), Positives = 46/99 (46%), Gaps = 8/99 (8%)
Query: 1 MIKSSLIGTI--------AKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFS 52
M K+ I + + L D EK +N++L+ + A+ + + I GFGSF
Sbjct: 1 MNKTEFIAFMTDHGHNHKHASHKTLTKADAEKALNLVLDSVISAIKSHHNINITGFGSFE 60
Query: 53 VRKRAARLARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
+ R AR R P + ++ P FRAG+ +KE N
Sbjct: 61 IHHRKAREGRNPKTGAKMKIDAYNQPTFRAGRKMKEACN 99
>gi|238653880|emb|CAV30823.1| Integration host factor, alpha subunit [magnetite-containing
magnetic vibrio]
Length = 104
Score = 76.7 bits (188), Expect = 1e-12, Method: Composition-based stats.
Identities = 26/92 (28%), Positives = 46/92 (50%), Gaps = 1/92 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
+ L I K+ L+ + +I+ L+ ++++L +G V+I FG FSVR + R+
Sbjct: 7 TRLQLSEAIYKE-VGLSRTESAEILQTALKIISESLVSGDYVKISSFGCFSVRAKKKRMG 65
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLNSP 93
R P + + + + FR LK R+NS
Sbjct: 66 RNPKTGEQAIILPRNILTFRPSSTLKLRINSK 97
>gi|21672326|ref|NP_660393.1| DNA-binding protein HU-alpha [Buchnera aphidicola str. Sg
(Schizaphis graminum)]
gi|25008343|sp|Q8KA69|DBH_BUCAP RecName: Full=DNA-binding protein HU
gi|21622927|gb|AAM67604.1| DNA-binding protein hu-alpha [Buchnera aphidicola str. Sg
(Schizaphis graminum)]
Length = 90
Score = 76.7 bits (188), Expect = 1e-12, Method: Composition-based stats.
Identities = 31/91 (34%), Positives = 49/91 (53%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI I+K++ L+ ++ + +L + ++L G V+I GFG+F V RA+R
Sbjct: 1 MNKTQLIKIISKQS-NLSKIQIKSTLEKILSAIIESLKKGESVQIVGFGTFKVNSRASRT 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P K I + VP F +GK LK +
Sbjct: 60 GRNPQTGKEIIIPATKVPSFISGKTLKNAIK 90
>gi|258406356|ref|YP_003199098.1| histone family protein DNA-binding protein [Desulfohalobium
retbaense DSM 5692]
gi|257798583|gb|ACV69520.1| histone family protein DNA-binding protein [Desulfohalobium
retbaense DSM 5692]
Length = 98
Score = 76.7 bits (188), Expect = 1e-12, Method: Composition-based stats.
Identities = 21/93 (22%), Positives = 44/93 (47%), Gaps = 1/93 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ ++ I ++ + + +V+ IV +L+ M ++ + I GFG F + R
Sbjct: 7 TKADIVDAIYEQ-GQRSRAEVKNIVEDMLDIMRDSIKKDYALLISGFGKFEAYDKEPRKG 65
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLNSPD 94
R P ++ I++ + V FR + + LN +
Sbjct: 66 RNPQTEEAITLPGRTVVVFRLSRRFRAELNPRE 98
>gi|319947464|ref|ZP_08021696.1| DNA-binding protein HU [Streptococcus australis ATCC 700641]
gi|315419725|gb|ADU15832.1| histone-like protein [Streptococcus parasanguinis]
gi|319746404|gb|EFV98665.1| DNA-binding protein HU [Streptococcus australis ATCC 700641]
Length = 91
Score = 76.7 bits (188), Expect = 1e-12, Method: Composition-based stats.
Identities = 32/90 (35%), Positives = 51/90 (56%), Gaps = 1/90 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K LI +A+ +L +D V+ + +++ L+ G +V++ GFG+F VR+RAAR
Sbjct: 3 NKQDLIAKVAEAT-ELTKKDSAAAVDAVFAAVSEYLSKGEKVQLIGFGNFEVRERAARKG 61
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P K I + VP F+AGK LK+ +
Sbjct: 62 RNPQTGKEIKIAASKVPAFKAGKALKDAVK 91
>gi|319408456|emb|CBI82111.1| integration host factor alpha subunit [Bartonella schoenbuchensis
R1]
Length = 103
Score = 76.7 bits (188), Expect = 1e-12, Method: Composition-based stats.
Identities = 22/89 (24%), Positives = 45/89 (50%), Gaps = 1/89 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
++ L + +K L+Y + +V ++L+E+ +L V++ F +F VR ++ R+
Sbjct: 7 TRADLASAVCRK-VGLSYTESSALVELILDEICNSLVKDEVVKLSSFATFQVRSKSERIG 65
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P + + V F+A LK+R+
Sbjct: 66 RNPKTGIEAPIPPRRVVTFKAANILKKRI 94
>gi|94264269|ref|ZP_01288063.1| Histone-like bacterial DNA-binding protein [delta proteobacterium
MLMS-1]
gi|94266795|ref|ZP_01290460.1| Histone-like bacterial DNA-binding protein [delta proteobacterium
MLMS-1]
gi|94268979|ref|ZP_01291342.1| Histone-like bacterial DNA-binding protein [delta proteobacterium
MLMS-1]
gi|93451393|gb|EAT02249.1| Histone-like bacterial DNA-binding protein [delta proteobacterium
MLMS-1]
gi|93452538|gb|EAT03124.1| Histone-like bacterial DNA-binding protein [delta proteobacterium
MLMS-1]
gi|93455314|gb|EAT05521.1| Histone-like bacterial DNA-binding protein [delta proteobacterium
MLMS-1]
Length = 97
Score = 76.7 bits (188), Expect = 1e-12, Method: Composition-based stats.
Identities = 20/92 (21%), Positives = 46/92 (50%), Gaps = 1/92 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
+ L I ++ + + +V+++ E++ L +++ FG+F+VR ++ R
Sbjct: 7 TRKDLAKAINEQM-GFSQRSAADLVDVVFEQLKDTLMAEEPIKLVQFGTFNVRHKSPRQG 65
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLNSP 93
R P + + ++ + FR K ++ER+NS
Sbjct: 66 RNPRTGDPMEITKRSMISFRPSKIVRERINSK 97
>gi|118471339|ref|YP_886729.1| DNA-binding protein HU [Mycobacterium smegmatis str. MC2 155]
gi|14194641|sp|Q9ZHC5|DBH_MYCS2 RecName: Full=DNA-binding protein HU homolog; AltName:
Full=Histone-like protein; Short=Hlp
gi|3930569|gb|AAD13809.1| histone-like protein [Mycobacterium smegmatis str. MC2 155]
gi|67515139|gb|AAY68087.1| histone-like protein [Mycobacterium smegmatis str. MC2 155]
gi|118172626|gb|ABK73522.1| DNA-binding protein HU [Mycobacterium smegmatis str. MC2 155]
Length = 208
Score = 76.7 bits (188), Expect = 1e-12, Method: Composition-based stats.
Identities = 29/90 (32%), Positives = 45/90 (50%), Gaps = 1/90 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI + K + + V +++ + +A+ G V I GFG F R+RAAR+
Sbjct: 1 MNKAELIDVLTTKM-GTDRRQATAAVENVVDTIVRAVHKGDSVTITGFGVFEQRRRAARV 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
AR P + + V+ VP FR G K +
Sbjct: 60 ARNPRTGETVKVKPTSVPAFRPGAQFKAVI 89
>gi|226305897|ref|YP_002765857.1| DNA-binding protein HU [Rhodococcus erythropolis PR4]
gi|226185014|dbj|BAH33118.1| putative DNA-binding protein HU [Rhodococcus erythropolis PR4]
Length = 228
Score = 76.3 bits (187), Expect = 1e-12, Method: Composition-based stats.
Identities = 29/90 (32%), Positives = 46/90 (51%), Gaps = 1/90 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI + +K + + V +++ + +A+ G V I GFG F R+RAAR+
Sbjct: 1 MNKAELIDVLTEKL-GSDRRTATDAVEHVVDTIVRAVHRGESVTITGFGVFEQRRRAARV 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
AR P + + V+ VP FR G K +
Sbjct: 60 ARNPRTGETVKVKPTSVPAFRPGAQFKAVI 89
>gi|259417894|ref|ZP_05741813.1| DNA-binding protein HU [Silicibacter sp. TrichCH4B]
gi|259346800|gb|EEW58614.1| DNA-binding protein HU [Silicibacter sp. TrichCH4B]
Length = 97
Score = 76.3 bits (187), Expect = 1e-12, Method: Composition-based stats.
Identities = 21/93 (22%), Positives = 40/93 (43%), Gaps = 1/93 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ L+ +A++ + + ++ + +T+ ++ GG V + G G R+R R
Sbjct: 5 MTKTQLVAALAEEMDS-DKKTAGAALDAVCNLITREVSGGGAVTLPGVGKIYCRERPERE 63
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSP 93
R P + E V K LK+ +N
Sbjct: 64 VRNPATGEKFMKEADKVVKMTIAKALKDSVNGD 96
>gi|71907279|ref|YP_284866.1| histone-like DNA-binding protein [Dechloromonas aromatica RCB]
gi|71846900|gb|AAZ46396.1| Histone-like bacterial DNA-binding protein [Dechloromonas
aromatica RCB]
Length = 73
Score = 76.3 bits (187), Expect = 1e-12, Method: Composition-based stats.
Identities = 30/65 (46%), Positives = 40/65 (61%)
Query: 26 VNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLARAPLAQKVISVEEKMVPFFRAGKN 85
V LL+++ Q L G RVE+RGFGSF + R RL R P ++V K VP F+AGK
Sbjct: 5 VKELLDQIGQTLVAGNRVEVRGFGSFGLTYRPPRLGRNPKTGDKVAVPGKYVPHFKAGKE 64
Query: 86 LKERL 90
L+E +
Sbjct: 65 LRELV 69
>gi|325965076|ref|YP_004242982.1| bacterial nucleoid DNA-binding protein [Arthrobacter
phenanthrenivorans Sphe3]
gi|323471163|gb|ADX74848.1| bacterial nucleoid DNA-binding protein [Arthrobacter
phenanthrenivorans Sphe3]
Length = 95
Score = 76.3 bits (187), Expect = 1e-12, Method: Composition-based stats.
Identities = 22/93 (23%), Positives = 40/93 (43%), Gaps = 1/93 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
+S L+ +A K + V +++ L E ++A G ++ I G+ + RAAR
Sbjct: 4 NRSELVAEVAGK-AGTSQAAVNSVLDALFEVFETSVAAGEKITIPGWLAVERTDRAARTG 62
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLNSPD 94
R P + I + AG LK +++
Sbjct: 63 RNPQTGETIQIAAGHSVKLTAGSKLKAAVSNKK 95
>gi|218886655|ref|YP_002435976.1| histone family protein DNA-binding protein [Desulfovibrio
vulgaris str. 'Miyazaki F']
gi|218757609|gb|ACL08508.1| histone family protein DNA-binding protein [Desulfovibrio
vulgaris str. 'Miyazaki F']
Length = 97
Score = 76.3 bits (187), Expect = 1e-12, Method: Composition-based stats.
Identities = 26/92 (28%), Positives = 42/92 (45%), Gaps = 1/92 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ ++ I +K N +V+ +V LL M QA+ + I GFG F + AR
Sbjct: 7 TKAEIVDAIYEKT-DRNRAEVKGVVESLLGIMKQAIKKDHALLISGFGKFEAYDKKARKG 65
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLNSP 93
R P + I++ + V FR + + LN
Sbjct: 66 RNPQTDETITLPPRKVVVFRLSRKFRAELNDE 97
>gi|228911465|ref|ZP_04075263.1| DNA-binding protein HU [Bacillus thuringiensis IBL 200]
gi|228848211|gb|EEM93067.1| DNA-binding protein HU [Bacillus thuringiensis IBL 200]
Length = 84
Score = 76.3 bits (187), Expect = 1e-12, Method: Composition-based stats.
Identities = 29/93 (31%), Positives = 48/93 (51%), Gaps = 9/93 (9%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI + ++ +L +V+ +LE + AL N V++ FG+F VR+RAAR
Sbjct: 1 MNKSELIKQVIIQS-ELTKPQASLVVDAVLESIQHALQNREHVQLLSFGTFEVRERAARE 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSP 93
R P + +++ GK+LKE + +
Sbjct: 60 GRNPHTGEALTIPA--------GKSLKEAVKTK 84
>gi|126662500|ref|ZP_01733499.1| DNA-binding protein HU [Flavobacteria bacterium BAL38]
gi|126625879|gb|EAZ96568.1| DNA-binding protein HU [Flavobacteria bacterium BAL38]
Length = 97
Score = 76.3 bits (187), Expect = 1e-12, Method: Composition-based stats.
Identities = 27/95 (28%), Positives = 44/95 (46%), Gaps = 1/95 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ ++ I++K L DV+ V +EE+ +L G V +RGFGSF ++ RA +
Sbjct: 1 MTKADIVAKISEKL-GLEKGDVQATVETFMEEVKNSLETGDNVYLRGFGSFIIKTRAEKT 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDS 95
R I + +P F+ K E +
Sbjct: 60 GRNISKNTTIKIPAHNIPAFKPAKVFVESVKEKTE 94
>gi|94971969|ref|YP_594009.1| histone-like DNA-binding protein [Deinococcus geothermalis DSM
11300]
gi|94554020|gb|ABF43935.1| histone-like protein DNA-binding protein [Deinococcus geothermalis
DSM 11300]
Length = 149
Score = 76.3 bits (187), Expect = 1e-12, Method: Composition-based stats.
Identities = 26/94 (27%), Positives = 41/94 (43%), Gaps = 1/94 (1%)
Query: 3 KSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLAR 62
K+ L+ +A K L + E+ V+ +L + A+ G V + G G+ SV+ AAR
Sbjct: 53 KTQLVDMVADKT-GLTKKQSEEAVSAMLGVVVDAIKQGKSVGLPGLGTLSVKATAARTGV 111
Query: 63 APLAQKVISVEEKMVPFFRAGKNLKERLNSPDST 96
P + I + F+ LK L D T
Sbjct: 112 RPGTSERIQIPAGKKVAFKVASTLKSSLGGTDDT 145
>gi|94499890|ref|ZP_01306426.1| Histone-like DNA-binding protein [Oceanobacter sp. RED65]
gi|94428091|gb|EAT13065.1| Histone-like DNA-binding protein [Oceanobacter sp. RED65]
Length = 91
Score = 76.3 bits (187), Expect = 1e-12, Method: Composition-based stats.
Identities = 24/92 (26%), Positives = 49/92 (53%), Gaps = 1/92 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K L +A+ N ++ + +I+ ++ +++T++L V + GFGSF + R R
Sbjct: 1 MRKPELAAAVAE-NADISKEKASEIITIITDQITESLRKNDSVSLIGFGSFVQKHRPERQ 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
+ P + I+++ F+ GK LK+ +N+
Sbjct: 60 GKNPQTGEAITIKASNSVGFKPGKALKDAVNN 91
>gi|330502968|ref|YP_004379837.1| histone family protein DNA-binding protein [Pseudomonas mendocina
NK-01]
gi|328917254|gb|AEB58085.1| histone family protein DNA-binding protein [Pseudomonas mendocina
NK-01]
Length = 92
Score = 76.3 bits (187), Expect = 1e-12, Method: Composition-based stats.
Identities = 28/91 (30%), Positives = 40/91 (43%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
+ K LI +A+ L V +++ L E + AL N G + + G G V +R AR
Sbjct: 3 ITKDQLISDLAEA-VSLPKATVRTLIDQLGEIVGDALENDGEITLPGIGKLKVSERPART 61
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P K I + K V K L + LN
Sbjct: 62 GRNPQTGKSIEIAAKKVVKLVPAKALTDALN 92
>gi|311742216|ref|ZP_07716026.1| DNA-binding protein HU [Aeromicrobium marinum DSM 15272]
gi|311314709|gb|EFQ84616.1| DNA-binding protein HU [Aeromicrobium marinum DSM 15272]
Length = 92
Score = 76.3 bits (187), Expect = 1e-12, Method: Composition-based stats.
Identities = 21/89 (23%), Positives = 38/89 (42%), Gaps = 1/89 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
+ +S L+ +A+K + + +++ L + + ++ G +V I G S RAAR
Sbjct: 3 ISRSDLVSALAEK-AGTTKTEADAVLSALSDVLLDSVGKGEKVSIPGILSVERVSRAART 61
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKER 89
R P + I + AG LK
Sbjct: 62 GRNPSTGETIEIPAGFGVKVSAGSKLKAA 90
>gi|78355564|ref|YP_387013.1| histone-like DNA-binding protein [Desulfovibrio desulfuricans
subsp. desulfuricans str. G20]
gi|78217969|gb|ABB37318.1| histone-like DNA-binding protein [Desulfovibrio desulfuricans
subsp. desulfuricans str. G20]
Length = 97
Score = 76.3 bits (187), Expect = 1e-12, Method: Composition-based stats.
Identities = 26/92 (28%), Positives = 43/92 (46%), Gaps = 1/92 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ ++ I +K + N +V+ +V LL M QA+ + I GFG F + AR
Sbjct: 7 TKADIVDAIYEKTER-NRAEVKNVVESLLGIMKQAIKKDHALLISGFGKFEAYDKKARKG 65
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLNSP 93
R P + I++ + V FR + + LN
Sbjct: 66 RNPQTDETITLPPRKVVVFRLSRKFRAELNGE 97
>gi|37523114|ref|NP_926491.1| DNA binding protein HU [Gloeobacter violaceus PCC 7421]
gi|35214117|dbj|BAC91486.1| gll3545 [Gloeobacter violaceus PCC 7421]
Length = 105
Score = 76.3 bits (187), Expect = 1e-12, Method: Composition-based stats.
Identities = 27/89 (30%), Positives = 42/89 (47%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
+ L+ +A + L + ++ LE + ALA G V++ GFGSF VR+R AR
Sbjct: 8 NRQQLLQQMASRVDGLTQKTAGAALDAALEVIADALAQGRTVKLSGFGSFQVRRRPARTN 67
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERL 90
P + + V F + L+ERL
Sbjct: 68 IHPRTGQPVLVPAAWNAVFSPAQALRERL 96
>gi|254374459|ref|ZP_04989941.1| hypothetical protein FTDG_00629 [Francisella novicida GA99-3548]
gi|151572179|gb|EDN37833.1| hypothetical protein FTDG_00629 [Francisella novicida GA99-3548]
Length = 66
Score = 76.3 bits (187), Expect = 1e-12, Method: Composition-based stats.
Identities = 24/66 (36%), Positives = 39/66 (59%)
Query: 26 VNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLARAPLAQKVISVEEKMVPFFRAGKN 85
++ + +T+AL NG V + GFG+F V++R+ R R P + I + VP F+AGK
Sbjct: 1 LDATIAAVTKALKNGDSVTLVGFGTFQVKERSPREGRNPKTGETIKIPASKVPSFKAGKG 60
Query: 86 LKERLN 91
LK+ +
Sbjct: 61 LKDAVK 66
>gi|58039587|ref|YP_191551.1| DNA-binding protein HU-beta [Gluconobacter oxydans 621H]
gi|58002001|gb|AAW60895.1| DNA-binding protein HU-beta [Gluconobacter oxydans 621H]
Length = 89
Score = 76.3 bits (187), Expect = 1e-12, Method: Composition-based stats.
Identities = 19/90 (21%), Positives = 40/90 (44%), Gaps = 1/90 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ + + + + ++ VN +++ + + L G + FG+F+V + AR
Sbjct: 1 MSKA-FLAAVLQDSMNCTGVVAQRAVNDMIDAIIEELREEGGFTLPSFGTFTVCETKARQ 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
A P + + V F+A LK+ +
Sbjct: 60 AVNPRTGEPVEVSAGRTVRFKASPGLKQLV 89
>gi|157151424|ref|YP_001450003.1| DNA-binding histone-like protein HU [Streptococcus gordonii str.
Challis substr. CH1]
gi|262282714|ref|ZP_06060482.1| DNA-binding protein HU [Streptococcus sp. 2_1_36FAA]
gi|157076218|gb|ABV10901.1| DNA-binding histone-like protein HU [Streptococcus gordonii str.
Challis substr. CH1]
gi|262262005|gb|EEY80703.1| DNA-binding protein HU [Streptococcus sp. 2_1_36FAA]
Length = 91
Score = 76.3 bits (187), Expect = 1e-12, Method: Composition-based stats.
Identities = 33/90 (36%), Positives = 50/90 (55%), Gaps = 1/90 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K LI +A +L +D V+ + +T+ L+ G +V++ GFG+F VR+RAAR
Sbjct: 3 NKQDLIAKVAAAT-ELTKKDSAAAVDAVFAAVTEYLSKGEKVQLIGFGNFEVRERAARKG 61
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P K I + VP F+AGK LK+ +
Sbjct: 62 RNPQTGKEIKIAASKVPAFKAGKALKDAVK 91
>gi|302343037|ref|YP_003807566.1| histone family protein DNA-binding protein [Desulfarculus baarsii
DSM 2075]
gi|301639650|gb|ADK84972.1| histone family protein DNA-binding protein [Desulfarculus baarsii
DSM 2075]
Length = 93
Score = 76.3 bits (187), Expect = 1e-12, Method: Composition-based stats.
Identities = 31/92 (33%), Positives = 40/92 (43%), Gaps = 1/92 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQ-DVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAAR 59
M K LI +A K ++V E M +AL G +V I GFG + VR R AR
Sbjct: 1 MNKKDLIAAVAGKLGYGPCAPVTGRVVEAAFEAMAEALGRGEQVRINGFGVWRVRGRKAR 60
Query: 60 LARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + I + FR LK R+N
Sbjct: 61 EGRNPRTGESIQIPAASGVIFRPADALKGRVN 92
>gi|313886994|ref|ZP_07820694.1| putative DNA-binding protein HU [Porphyromonas asaccharolytica
PR426713P-I]
gi|332299884|ref|YP_004441805.1| histone family protein DNA-binding protein [Porphyromonas
asaccharolytica DSM 20707]
gi|312923520|gb|EFR34329.1| putative DNA-binding protein HU [Porphyromonas asaccharolytica
PR426713P-I]
gi|332176947|gb|AEE12637.1| histone family protein DNA-binding protein [Porphyromonas
asaccharolytica DSM 20707]
Length = 90
Score = 76.3 bits (187), Expect = 1e-12, Method: Composition-based stats.
Identities = 29/91 (31%), Positives = 49/91 (53%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ ++ +IA L+ Q+V ++V ++ + A++ G V +RGFGSF V++RA +
Sbjct: 1 MTKAEVVKSIAD-TTGLDRQEVLQVVEAFMDTVKNAMSQGDNVYLRGFGSFVVKERAEKT 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
AR Q I V + VP F+ K +
Sbjct: 60 ARNISKQTTIIVPARKVPTFKPSKAFTAIIK 90
>gi|315419713|gb|ADU15826.1| histone-like protein [Streptococcus oralis]
gi|315419715|gb|ADU15827.1| histone-like protein [Streptococcus oralis]
gi|315419721|gb|ADU15830.1| histone-like protein [Streptococcus oralis]
Length = 91
Score = 76.3 bits (187), Expect = 1e-12, Method: Composition-based stats.
Identities = 34/90 (37%), Positives = 51/90 (56%), Gaps = 1/90 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K LI +A+ +L +D V+ + +T+ LA G +V++ GFG+F VR+RAAR
Sbjct: 3 NKQDLIAKVAEAT-ELTKKDSAAAVDAVFAAVTEYLAAGEKVQLIGFGNFEVRERAARKG 61
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P K I + VP F+AGK LK+ +
Sbjct: 62 RNPQTGKEIKIAASKVPAFKAGKALKDVIK 91
>gi|15594577|ref|NP_212366.1| hbbU protein [Borrelia burgdorferi B31]
gi|195941414|ref|ZP_03086796.1| hbbU protein [Borrelia burgdorferi 80a]
gi|216264191|ref|ZP_03436183.1| small DNA-binding protein Hbb [Borrelia burgdorferi 156a]
gi|221217809|ref|ZP_03589277.1| DNA-binding protein HU [Borrelia burgdorferi 72a]
gi|224532651|ref|ZP_03673272.1| DNA-binding protein HU [Borrelia burgdorferi WI91-23]
gi|224533805|ref|ZP_03674393.1| DNA-binding protein HU [Borrelia burgdorferi CA-11.2a]
gi|225549097|ref|ZP_03770072.1| DNA-binding protein HU [Borrelia burgdorferi 94a]
gi|225550199|ref|ZP_03771159.1| DNA-binding protein HU [Borrelia burgdorferi 118a]
gi|225552278|ref|ZP_03773218.1| DNA-binding protein HU [Borrelia sp. SV1]
gi|226321207|ref|ZP_03796744.1| DNA-binding protein HU [Borrelia burgdorferi 29805]
gi|3913407|sp|Q57267|DBH_BORBU RecName: Full=DNA-binding protein HU; AltName: Full=HBbu
gi|1280537|gb|AAC73073.1| histone-like protein HBbu [Borrelia burgdorferi]
gi|1280539|gb|AAC73074.1| histone-like protein HBbu [Borrelia burgdorferi]
gi|1280541|gb|AAC73075.1| histone-like protein HBbu [Borrelia burgdorferi]
gi|1280543|gb|AAC73076.1| histone-like protein HBbu [Borrelia burgdorferi]
gi|2688124|gb|AAC66617.1| hbbU protein [Borrelia burgdorferi B31]
gi|89145710|gb|ABD62044.1| Hbb [Borrelia burgdorferi]
gi|89145712|gb|ABD62045.1| Hbb [Borrelia burgdorferi]
gi|89145714|gb|ABD62046.1| Hbb [Borrelia burgdorferi]
gi|89145716|gb|ABD62047.1| Hbb [Borrelia burgdorferi]
gi|89145718|gb|ABD62048.1| Hbb [Borrelia burgdorferi]
gi|89145720|gb|ABD62049.1| Hbb [Borrelia burgdorferi]
gi|215980664|gb|EEC21471.1| small DNA-binding protein Hbb [Borrelia burgdorferi 156a]
gi|221192486|gb|EEE18705.1| DNA-binding protein HU [Borrelia burgdorferi 72a]
gi|224512431|gb|EEF82811.1| DNA-binding protein HU [Borrelia burgdorferi WI91-23]
gi|224513098|gb|EEF83461.1| DNA-binding protein HU [Borrelia burgdorferi CA-11.2a]
gi|225369311|gb|EEG98764.1| DNA-binding protein HU [Borrelia burgdorferi 118a]
gi|225370323|gb|EEG99761.1| DNA-binding protein HU [Borrelia burgdorferi 94a]
gi|225371276|gb|EEH00706.1| DNA-binding protein HU [Borrelia sp. SV1]
gi|226233404|gb|EEH32148.1| DNA-binding protein HU [Borrelia burgdorferi 29805]
gi|312149663|gb|ADQ29734.1| DNA-binding protein HU [Borrelia burgdorferi N40]
gi|313185151|gb|ADR50140.1| histone-like protein HBbu [Borrelia burgdorferi]
gi|1588686|prf||2209287A hbb gene
Length = 108
Score = 76.0 bits (186), Expect = 1e-12, Method: Composition-based stats.
Identities = 32/94 (34%), Positives = 50/94 (53%), Gaps = 5/94 (5%)
Query: 2 IKSSLIGTIA----KKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRA 57
KS ++ I+ N KL + + +++ EE+ L + +E R FG+F VRKR
Sbjct: 10 TKSDIVDQISLNIKNNNLKLEKKYIRLVIDAFFEELKSNLCSNNVIEFRSFGTFEVRKRK 69
Query: 58 AR-LARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R AR P + + V + V +FR GK+LKER+
Sbjct: 70 GRLNARNPQTGEYVKVLDHHVAYFRPGKDLKERV 103
>gi|312148159|gb|ADQ30818.1| DNA-binding protein HU [Borrelia burgdorferi JD1]
Length = 108
Score = 76.0 bits (186), Expect = 1e-12, Method: Composition-based stats.
Identities = 32/94 (34%), Positives = 50/94 (53%), Gaps = 5/94 (5%)
Query: 2 IKSSLIGTIA----KKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRA 57
KS ++ I+ N KL + + +++ EE+ L + +E R FG+F VRKR
Sbjct: 10 TKSDIVDQISLNIKNNNLKLEKKYIRLVIDAFFEELKSNLCSNNVIEFRSFGTFEVRKRK 69
Query: 58 AR-LARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R AR P + + V + V +FR GK+LKER+
Sbjct: 70 GRLNARNPQTGEYVKVLDHNVAYFRPGKDLKERV 103
>gi|152993465|ref|YP_001359186.1| DNA-binding protein HU [Sulfurovum sp. NBC37-1]
gi|151425326|dbj|BAF72829.1| DNA-binding protein HU [Sulfurovum sp. NBC37-1]
Length = 93
Score = 76.0 bits (186), Expect = 1e-12, Method: Composition-based stats.
Identities = 24/90 (26%), Positives = 40/90 (44%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ + + K + E+ V + +T+AL N V + GFG+FS A +
Sbjct: 1 MTKAEFVELVQKNGEFESKAAAERAVKAFITSVTEALVNKDTVSLVGFGTFSTVDVAEKS 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
+ P K + P F+ GK LK+ +
Sbjct: 61 GKVPGTNKTYTKPAHTAPKFKIGKTLKDAV 90
>gi|86143784|ref|ZP_01062160.1| DNA-binding protein HU [Leeuwenhoekiella blandensis MED217]
gi|85829827|gb|EAQ48289.1| DNA-binding protein HU [Leeuwenhoekiella blandensis MED217]
Length = 98
Score = 76.0 bits (186), Expect = 2e-12, Method: Composition-based stats.
Identities = 26/93 (27%), Positives = 44/93 (47%), Gaps = 1/93 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ ++ I++K + DV+ V + E+ +L G V +RGFGSF ++ RA +
Sbjct: 1 MTKADIVAKISEKL-GIEKNDVQATVETFMTEVKNSLEGGDNVYLRGFGSFIIKTRAEKT 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSP 93
R I + +P F+ K E + S
Sbjct: 60 GRNISKNTTIKIPAHNIPAFKPAKVFVEGVKSN 92
>gi|169630373|ref|YP_001704022.1| DNA-binding protein HU [Mycobacterium abscessus ATCC 19977]
gi|169242340|emb|CAM63368.1| DNA-binding protein HU homolog (Histone-like) [Mycobacterium
abscessus]
Length = 207
Score = 76.0 bits (186), Expect = 2e-12, Method: Composition-based stats.
Identities = 28/90 (31%), Positives = 45/90 (50%), Gaps = 1/90 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI + +K + + V +++ + + + G V I GFG F R+RAAR+
Sbjct: 1 MNKAELIDVLTQKL-GSDRRQATAAVEHVVDTIVRTVHKGESVTITGFGVFEQRRRAARV 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
AR P + + V+ VP FR G K +
Sbjct: 60 ARNPRTGETVKVKPTSVPTFRPGAQFKAVV 89
>gi|3913403|sp|Q45352|DBH_BORPR RecName: Full=DNA-binding protein HBbu
gi|1280569|gb|AAC73077.1| histone-like protein HBbu [Borrelia parkeri]
Length = 108
Score = 76.0 bits (186), Expect = 2e-12, Method: Composition-based stats.
Identities = 30/94 (31%), Positives = 51/94 (54%), Gaps = 5/94 (5%)
Query: 2 IKSSLIGTIA----KKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRA 57
KS ++ I+ N KL + + +V+ EE+ +L +E R FG+F +RKR
Sbjct: 10 TKSDIVNQISLNIKNSNEKLEKKYIRLVVDAFFEELKNSLCLNNVIEFRSFGTFELRKRK 69
Query: 58 AR-LARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R AR P + ++V++ V +FR GK+LK+ +
Sbjct: 70 GRQNARNPQTGEYVNVDDHHVAYFRPGKDLKDGV 103
>gi|89067289|ref|ZP_01154802.1| DNA-binding protein HU [Oceanicola granulosus HTCC2516]
gi|89046858|gb|EAR52912.1| DNA-binding protein HU [Oceanicola granulosus HTCC2516]
Length = 95
Score = 76.0 bits (186), Expect = 2e-12, Method: Composition-based stats.
Identities = 21/91 (23%), Positives = 42/91 (46%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ L+ +A++ + + ++ + +T+ ++ GG V + G G R+R R+
Sbjct: 5 MTKTQLVAALAEEM-GSDKKTASAALDAVTNVITKEVSGGGAVTLPGVGKIYCRERPERM 63
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + I + V K LK+ +N
Sbjct: 64 VRNPATGEQIKKDADKVVKMTIAKALKDSVN 94
>gi|1280553|gb|AAC73078.1| histone-like protein HBbu [Borrelia garinii]
gi|1280555|gb|AAC73079.1| histone-like protein HBbu [Borrelia garinii]
Length = 108
Score = 76.0 bits (186), Expect = 2e-12, Method: Composition-based stats.
Identities = 32/95 (33%), Positives = 49/95 (51%), Gaps = 5/95 (5%)
Query: 1 MIKSSLIGTIA----KKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKR 56
+ KS ++ I N KL + + +++ EE+ L +E R FG+F VRKR
Sbjct: 9 ITKSDIVDQIFFNIRNNNLKLEKKYIRLVIDAFFEELKGNLCLNNVIEFRSFGTFEVRKR 68
Query: 57 AAR-LARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R AR P + + V + V +FR GK+LKER+
Sbjct: 69 KGRLNARNPQTGEYVKVLDHHVAYFRPGKDLKERV 103
>gi|319956531|ref|YP_004167794.1| histone family protein DNA-binding protein [Nitratifractor
salsuginis DSM 16511]
gi|319418935|gb|ADV46045.1| histone family protein DNA-binding protein [Nitratifractor
salsuginis DSM 16511]
Length = 90
Score = 76.0 bits (186), Expect = 2e-12, Method: Composition-based stats.
Identities = 30/90 (33%), Positives = 46/90 (51%), Gaps = 1/90 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ I +A+K+ L+ +D E +++ LE +T+AL V GFGSF K+ R
Sbjct: 1 MKKTDFIAEVAQKS-GLSKKDTEAVIDAALETITEALKRRENVSFLGFGSFQAVKKNERE 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
P + + V K F+ GK LKE +
Sbjct: 60 ITIPGTTRKVKVPAKYSVRFKPGKLLKEAV 89
>gi|238763340|ref|ZP_04624304.1| Integration host factor subunit beta [Yersinia kristensenii ATCC
33638]
gi|238698439|gb|EEP91192.1| Integration host factor subunit beta [Yersinia kristensenii ATCC
33638]
Length = 69
Score = 76.0 bits (186), Expect = 2e-12, Method: Composition-based stats.
Identities = 31/66 (46%), Positives = 41/66 (62%)
Query: 26 VNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLARAPLAQKVISVEEKMVPFFRAGKN 85
+ +LE M LA G R+EIRGFGSFS+ RA R+ R P + +E K VP F+ GK
Sbjct: 1 MKEMLEHMAGTLAEGERIEIRGFGSFSLHYRAPRVGRNPKTGDKVELEGKYVPHFKPGKE 60
Query: 86 LKERLN 91
L++R N
Sbjct: 61 LRDRAN 66
>gi|90423898|ref|YP_532268.1| histone-like DNA-binding protein [Rhodopseudomonas palustris
BisB18]
gi|90105912|gb|ABD87949.1| histone-like DNA-binding protein [Rhodopseudomonas palustris
BisB18]
Length = 104
Score = 76.0 bits (186), Expect = 2e-12, Method: Composition-based stats.
Identities = 30/85 (35%), Positives = 47/85 (55%), Gaps = 1/85 (1%)
Query: 6 LIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLARAPL 65
L +A+++ +L+ + E I+ L+ +T+ L G R+ I G G VRKRAAR+ R P
Sbjct: 21 LAAALAEEH-ELSKKQTETILGDLVGRITKHLKKGERIRIVGLGILQVRKRAARMGRNPA 79
Query: 66 AQKVISVEEKMVPFFRAGKNLKERL 90
+ I ++ FRA K LKE +
Sbjct: 80 TGEAIQIKASKKVAFRAAKELKEAV 104
>gi|312867148|ref|ZP_07727358.1| DNA-binding protein HU-alpha [Streptococcus parasanguinis F0405]
gi|322389040|ref|ZP_08062608.1| DNA-binding protein HU [Streptococcus parasanguinis ATCC 903]
gi|311097277|gb|EFQ55511.1| DNA-binding protein HU-alpha [Streptococcus parasanguinis F0405]
gi|321144263|gb|EFX39673.1| DNA-binding protein HU [Streptococcus parasanguinis ATCC 903]
Length = 91
Score = 76.0 bits (186), Expect = 2e-12, Method: Composition-based stats.
Identities = 33/90 (36%), Positives = 51/90 (56%), Gaps = 1/90 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K LI +A+ +L +D V+ + +++ L+ G +V++ GFG+F VR+RAAR
Sbjct: 3 NKQDLIAKVAEAT-ELTKKDSAAAVDAVFAAVSEYLSKGEKVQLIGFGNFEVRERAARKG 61
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P K I + VP F+AGK LKE +
Sbjct: 62 RNPQTGKEIKIAASKVPAFKAGKALKEAVK 91
>gi|120403129|ref|YP_952958.1| histone family protein DNA-binding protein [Mycobacterium
vanbaalenii PYR-1]
gi|119955947|gb|ABM12952.1| bacterial nucleoid protein Hbs [Mycobacterium vanbaalenii PYR-1]
Length = 212
Score = 76.0 bits (186), Expect = 2e-12, Method: Composition-based stats.
Identities = 29/90 (32%), Positives = 46/90 (51%), Gaps = 1/90 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI + +K + + V +++ + +A+ G V I GFG F R+RAAR+
Sbjct: 1 MNKAELIDVLTEKL-GSDRRQATAAVENVVDTIVRAVHKGESVTITGFGVFEQRRRAARV 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
AR P + + V+ VP FR G K +
Sbjct: 60 ARNPRTGETVKVKPTSVPAFRPGAQFKAVV 89
>gi|145224804|ref|YP_001135482.1| histone family protein DNA-binding protein [Mycobacterium gilvum
PYR-GCK]
gi|315445134|ref|YP_004078013.1| bacterial nucleoid protein Hbs [Mycobacterium sp. Spyr1]
gi|145217290|gb|ABP46694.1| bacterial nucleoid protein Hbs [Mycobacterium gilvum PYR-GCK]
gi|315263437|gb|ADU00179.1| bacterial nucleoid protein Hbs [Mycobacterium sp. Spyr1]
Length = 217
Score = 76.0 bits (186), Expect = 2e-12, Method: Composition-based stats.
Identities = 29/90 (32%), Positives = 46/90 (51%), Gaps = 1/90 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI + +K + + V +++ + +A+ G V I GFG F R+RAAR+
Sbjct: 1 MNKAELIDVLTEKL-GSDRRQATAAVENVVDTIVRAVHKGESVTITGFGVFEQRRRAARV 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
AR P + + V+ VP FR G K +
Sbjct: 60 ARNPRTGETVKVKPTSVPAFRPGAQFKAVV 89
>gi|86134967|ref|ZP_01053549.1| DNA-binding protein [Polaribacter sp. MED152]
gi|85821830|gb|EAQ42977.1| DNA-binding protein [Polaribacter sp. MED152]
Length = 96
Score = 76.0 bits (186), Expect = 2e-12, Method: Composition-based stats.
Identities = 27/93 (29%), Positives = 44/93 (47%), Gaps = 1/93 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ ++ I+ K+ + DV V + E+ AL NG V +RGFGSF ++ RA +
Sbjct: 1 MTKADIVSKISDKS-GIEKTDVLATVEAFMTEVKDALENGDNVYLRGFGSFIIKTRAEKT 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSP 93
R I + +P F+ K E + +
Sbjct: 60 GRNISKNTTIKIPAHNIPAFKPAKTFTEGVKNK 92
>gi|126730363|ref|ZP_01746174.1| histone-like DNA-binding protein [Sagittula stellata E-37]
gi|126709096|gb|EBA08151.1| histone-like DNA-binding protein [Sagittula stellata E-37]
Length = 108
Score = 76.0 bits (186), Expect = 2e-12, Method: Composition-based stats.
Identities = 24/92 (26%), Positives = 43/92 (46%), Gaps = 1/92 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ L+ +A+K + + ++ L+E +T +A+GG V + G G R+R R+
Sbjct: 18 MTKTQLVAALAEKM-DADKKTANAALDSLVEIITSEVADGGAVTLPGVGKIYCRERPERM 76
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P + E K LK+ +N+
Sbjct: 77 VRNPATGEQFKKEADKQVKMTIAKALKDSVNA 108
>gi|14195649|sp|Q9ZDZ2|DBH_RICPR RecName: Full=DNA-binding protein HU
Length = 99
Score = 76.0 bits (186), Expect = 2e-12, Method: Composition-based stats.
Identities = 29/99 (29%), Positives = 45/99 (45%), Gaps = 8/99 (8%)
Query: 1 MIKSSLIGTIAKKNPK--------LNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFS 52
M K+ I + + L D EK +N+++E + A+ + V + GFGSF
Sbjct: 1 MNKTEFIAFMTEHGHNNKHAAHKTLTKADAEKALNLVIESVISAIKSKHNVNLTGFGSFE 60
Query: 53 VRKRAARLARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
+ R R R P + ++ P FRAG+ LKE N
Sbjct: 61 IHHRKEREGRNPKTGAKMKIDAYNQPTFRAGRKLKEACN 99
>gi|260431902|ref|ZP_05785873.1| DNA-binding protein HU [Silicibacter lacuscaerulensis ITI-1157]
gi|260415730|gb|EEX08989.1| DNA-binding protein HU [Silicibacter lacuscaerulensis ITI-1157]
Length = 95
Score = 76.0 bits (186), Expect = 2e-12, Method: Composition-based stats.
Identities = 22/92 (23%), Positives = 41/92 (44%), Gaps = 1/92 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ L+ +A++ + + + + +T+ ++ GG V + G G R+R R
Sbjct: 5 MTKTQLVAALAEEM-GTDKKSANAALEAITNLITREVSAGGAVTLPGVGKIYCRERPERQ 63
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P + + E V K LK+ +NS
Sbjct: 64 VRNPATGETFTKEADKVVKMTIAKALKDSVNS 95
>gi|329960404|ref|ZP_08298814.1| putative DNA-binding protein HU [Bacteroides fluxus YIT 12057]
gi|328532764|gb|EGF59549.1| putative DNA-binding protein HU [Bacteroides fluxus YIT 12057]
Length = 93
Score = 76.0 bits (186), Expect = 2e-12, Method: Composition-based stats.
Identities = 25/94 (26%), Positives = 47/94 (50%), Gaps = 1/94 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ L+ I+K+ ++ +V IV +E + +L+ G V +RGFGSF V++RA +
Sbjct: 1 MTKADLVQEISKQT-GIDRDEVLMIVEAFMETVKCSLSMGKEVYLRGFGSFIVKRRAEKT 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSPD 94
R + + +P F+ K ++ +
Sbjct: 60 GRNIGQNTTLIIPAHDIPAFKPSKEFSNKIKKEE 93
>gi|91205964|ref|YP_538319.1| DNA-binding protein HU [Rickettsia bellii RML369-C]
gi|157826672|ref|YP_001495736.1| DNA-binding protein HU [Rickettsia bellii OSU 85-389]
gi|91069508|gb|ABE05230.1| DNA-binding protein HU [Rickettsia bellii RML369-C]
gi|157801976|gb|ABV78699.1| DNA-binding protein HU [Rickettsia bellii OSU 85-389]
Length = 108
Score = 76.0 bits (186), Expect = 2e-12, Method: Composition-based stats.
Identities = 29/101 (28%), Positives = 44/101 (43%), Gaps = 8/101 (7%)
Query: 1 MIKSSLIGTIAKKNP--------KLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFS 52
M K+ I + + D EK +N +LE + A + V I GFGSF
Sbjct: 8 MNKTEFIAFMTEHGHHHKHQGHKSFTKADAEKALNWVLESIISATKHQHSVNITGFGSFG 67
Query: 53 VRKRAARLARAPLAQKVISVEEKMVPFFRAGKNLKERLNSP 93
++ R +R R P +++ P F+AG LKE N+
Sbjct: 68 IQSRKSREGRNPKTGAKMTIPAYKQPVFKAGSKLKEACNNK 108
>gi|110677982|ref|YP_680989.1| DNA-binding protein HU [Roseobacter denitrificans OCh 114]
gi|163732504|ref|ZP_02139949.1| DNA-binding protein HU [Roseobacter litoralis Och 149]
gi|109454098|gb|ABG30303.1| DNA-binding protein HU [Roseobacter denitrificans OCh 114]
gi|161393864|gb|EDQ18188.1| DNA-binding protein HU [Roseobacter litoralis Och 149]
Length = 95
Score = 76.0 bits (186), Expect = 2e-12, Method: Composition-based stats.
Identities = 20/91 (21%), Positives = 41/91 (45%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ L+ +A++ + + ++ + +T+ ++ GG V + G G R+R R+
Sbjct: 5 MTKTQLVAALAEEM-DTDKKSAGAALDAVCNLITKEVSGGGAVTLPGVGKIYCRERPERM 63
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + + V K LK+ +N
Sbjct: 64 VRNPATGEQFKKDADKVVKMTIAKALKDSVN 94
>gi|15892135|ref|NP_359849.1| DNA-binding protein HU [Rickettsia conorii str. Malish 7]
gi|15619264|gb|AAL02750.1| DNA-binding protein HU [Rickettsia conorii str. Malish 7]
Length = 139
Score = 76.0 bits (186), Expect = 2e-12, Method: Composition-based stats.
Identities = 28/99 (28%), Positives = 46/99 (46%), Gaps = 8/99 (8%)
Query: 1 MIKSSLIGTI--------AKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFS 52
M K+ I + + L + EK +N++L+ + A+ + + I GFGSF
Sbjct: 41 MNKTEFIAFMTDHGHNHKHASHKTLTKAEAEKALNLVLDSVISAIKSHHNINITGFGSFE 100
Query: 53 VRKRAARLARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
+ R AR R P + ++ P FRAG+ +KE N
Sbjct: 101 IHHRKAREGRNPKTGAKMKIDAYNQPTFRAGRKMKEACN 139
>gi|157964238|ref|YP_001499062.1| DNA-binding protein HU [Rickettsia massiliae MTU5]
gi|157844014|gb|ABV84515.1| DNA-binding protein HU [Rickettsia massiliae MTU5]
Length = 139
Score = 75.6 bits (185), Expect = 2e-12, Method: Composition-based stats.
Identities = 28/95 (29%), Positives = 45/95 (47%), Gaps = 4/95 (4%)
Query: 1 MIKSSLIGTIAK----KNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKR 56
M K+ I + L + EK +N++L+ + A+ + + I GFGSF + R
Sbjct: 45 MNKTEFIAFMTDHGHTSYKTLTKAEAEKALNLVLDSVISAIKSHHNINITGFGSFEIHHR 104
Query: 57 AARLARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
AR R P + ++ P FRAG+ +KE N
Sbjct: 105 KAREGRNPKTGAKMKIDAYNQPTFRAGRKMKEACN 139
>gi|261879346|ref|ZP_06005773.1| DNA-binding protein HU [Prevotella bergensis DSM 17361]
gi|270334049|gb|EFA44835.1| DNA-binding protein HU [Prevotella bergensis DSM 17361]
Length = 94
Score = 75.6 bits (185), Expect = 2e-12, Method: Composition-based stats.
Identities = 26/87 (29%), Positives = 40/87 (45%), Gaps = 2/87 (2%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGR-VEIRGFGSFSVRKRAAR 59
M K+ LI +A K +++ + VN LL + L G R V I FG F +++ A R
Sbjct: 1 MNKTQLIAALASKT-EISKANAATYVNTLLGIIADNLCEGDREVAIPDFGRFFIKQLAER 59
Query: 60 LARAPLAQKVISVEEKMVPFFRAGKNL 86
P + I++ + F A NL
Sbjct: 60 QGVNPATGERITIAAREKVAFNASDNL 86
>gi|315419727|gb|ADU15833.1| histone-like protein [Streptococcus parasanguinis]
Length = 91
Score = 75.6 bits (185), Expect = 2e-12, Method: Composition-based stats.
Identities = 32/90 (35%), Positives = 51/90 (56%), Gaps = 1/90 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K LI +A+ +L +D V+ + +++ L+ G +V++ GFG+F VR+RAAR
Sbjct: 3 NKQDLIAKVAEAT-ELTKKDSAAAVDAVFAAVSEYLSKGEKVQLIGFGNFEVRERAARKG 61
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P K I + VP F+AGK LK+ +
Sbjct: 62 RNPQTGKEIKIAASKVPAFKAGKALKDVVK 91
>gi|84685968|ref|ZP_01013864.1| DNA-binding protein HU [Maritimibacter alkaliphilus HTCC2654]
gi|84666061|gb|EAQ12535.1| DNA-binding protein HU [Rhodobacterales bacterium HTCC2654]
Length = 95
Score = 75.6 bits (185), Expect = 2e-12, Method: Composition-based stats.
Identities = 23/92 (25%), Positives = 43/92 (46%), Gaps = 1/92 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ L+ +A++ + + ++ + +T+ ++ GG V + G G R+R R+
Sbjct: 5 MTKTQLVAALAEEM-DTDKKSASAALDAITSIITKEVSGGGAVTLPGVGKIYCRERPERM 63
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P + I E V K LK+ +NS
Sbjct: 64 VRNPATGEQIKKEADKVVKMTIAKALKDSVNS 95
>gi|238795852|ref|ZP_04639365.1| Integration host factor subunit beta [Yersinia mollaretii ATCC
43969]
gi|238720315|gb|EEQ12118.1| Integration host factor subunit beta [Yersinia mollaretii ATCC
43969]
Length = 69
Score = 75.6 bits (185), Expect = 2e-12, Method: Composition-based stats.
Identities = 31/66 (46%), Positives = 41/66 (62%)
Query: 26 VNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLARAPLAQKVISVEEKMVPFFRAGKN 85
+ +LE M LA G R+EIRGFGSFS+ RA R+ R P + +E K VP F+ GK
Sbjct: 1 MKEMLEHMAGTLAEGERIEIRGFGSFSLHYRAPRVGRNPKTGAKVELEGKYVPHFKPGKE 60
Query: 86 LKERLN 91
L++R N
Sbjct: 61 LRDRAN 66
>gi|148274118|ref|YP_001223679.1| putative DNA-binding protein HU [Clavibacter michiganensis subsp.
michiganensis NCPPB 382]
gi|170783357|ref|YP_001711691.1| DNA-binding protein HU [Clavibacter michiganensis subsp.
sepedonicus]
gi|147832048|emb|CAN03021.1| putative DNA-binding protein Hu [Clavibacter michiganensis subsp.
michiganensis NCPPB 382]
gi|169157927|emb|CAQ03137.1| DNA-binding protein HU [Clavibacter michiganensis subsp.
sepedonicus]
Length = 95
Score = 75.6 bits (185), Expect = 2e-12, Method: Composition-based stats.
Identities = 20/90 (22%), Positives = 42/90 (46%), Gaps = 1/90 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
++ L+ +A ++ + + V +++ L + +A+G +V I G+ +F RAAR
Sbjct: 7 NRTELVAAVAAESGQ-SQAAVNGVLDALFSTVATNVADGVKVTIPGWVAFEQTARAARTG 65
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + + ++ AG LK +
Sbjct: 66 RNPQTGEPLEIKASKGVKVSAGSKLKAAVK 95
>gi|87199239|ref|YP_496496.1| histone-like DNA-binding protein [Novosphingobium aromaticivorans
DSM 12444]
gi|87134920|gb|ABD25662.1| histone-like DNA-binding protein [Novosphingobium aromaticivorans
DSM 12444]
Length = 91
Score = 75.6 bits (185), Expect = 2e-12, Method: Composition-based stats.
Identities = 29/91 (31%), Positives = 40/91 (43%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M S L IA + L+ D K V+ + + A A G V + GFG F V+ AR
Sbjct: 1 MNNSDLADIIAANH-GLSKADARKAVDSVFAAIADAAAKGEEVSLNGFGKFKVKNTPARE 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P I + F A K +K++LN
Sbjct: 60 GRNPSTGATIQIAASNKLTFAAAKAVKDKLN 90
>gi|119717520|ref|YP_924485.1| nucleoid protein Hbs [Nocardioides sp. JS614]
gi|119538181|gb|ABL82798.1| bacterial nucleoid protein Hbs [Nocardioides sp. JS614]
Length = 202
Score = 75.6 bits (185), Expect = 2e-12, Method: Composition-based stats.
Identities = 31/90 (34%), Positives = 45/90 (50%), Gaps = 1/90 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS I +A + N + + +L+ +T+ +A G +V I GFGSF R R AR
Sbjct: 1 MNKSEFIDALAARYEG-NRKAAAHALESVLDTITREVAKGEKVAITGFGSFEKRVREARW 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P I ++ VP F AG +LK +
Sbjct: 60 VRNPQTGARIKAKKTAVPKFTAGADLKNVV 89
>gi|1280561|gb|AAC73082.1| histone-like protein HBbu [Borrelia garinii]
Length = 108
Score = 75.6 bits (185), Expect = 2e-12, Method: Composition-based stats.
Identities = 31/95 (32%), Positives = 50/95 (52%), Gaps = 5/95 (5%)
Query: 1 MIKSSLIGTIA----KKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKR 56
+ KS ++ I+ N KL + + +++ EE+ L +E R FG+F VRKR
Sbjct: 9 ITKSDIVDQISLNIRNNNLKLEKKYIRLVIDAFFEELKGNLCLNNVIEFRSFGTFEVRKR 68
Query: 57 AAR-LARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R AR P + + V + + +FR GK+LKER+
Sbjct: 69 KGRLNARNPQTGEYVKVLDHHIAYFRPGKDLKERV 103
>gi|255530044|ref|YP_003090416.1| histone family protein DNA-binding protein [Pedobacter heparinus
DSM 2366]
gi|255343028|gb|ACU02354.1| histone family protein DNA-binding protein [Pedobacter heparinus
DSM 2366]
Length = 100
Score = 75.6 bits (185), Expect = 2e-12, Method: Composition-based stats.
Identities = 30/98 (30%), Positives = 49/98 (50%), Gaps = 1/98 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ +I I+ K + DV++ V + + ++ G V +RGFGSF V+KRA +
Sbjct: 1 MTKADIISEISTKT-GIEKVDVQETVEAFFKVIKNSMIGGENVYVRGFGSFVVKKRAQKT 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDSTLS 98
AR I + E VP F+ K +++ + LS
Sbjct: 60 ARNISKNTAIIIPEHFVPSFKPAKVFVDKVKNNSKKLS 97
>gi|254463816|ref|ZP_05077227.1| DNA-binding protein HU [Rhodobacterales bacterium Y4I]
gi|206684724|gb|EDZ45206.1| DNA-binding protein HU [Rhodobacterales bacterium Y4I]
Length = 95
Score = 75.6 bits (185), Expect = 2e-12, Method: Composition-based stats.
Identities = 21/91 (23%), Positives = 40/91 (43%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ L+ +A++ + + + + +T+ ++ GG V + G G R+R R
Sbjct: 5 MTKTQLVAALAEEM-GSDKKTAGSALEAVCSLITREVSGGGAVTLPGVGKIYCRERPERE 63
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + + E V K LK+ +N
Sbjct: 64 VRNPATGEKFTKEADKVVKMTIAKALKDSVN 94
>gi|254440395|ref|ZP_05053889.1| DNA-binding protein HU [Octadecabacter antarcticus 307]
gi|198255841|gb|EDY80155.1| DNA-binding protein HU [Octadecabacter antarcticus 307]
Length = 96
Score = 75.6 bits (185), Expect = 2e-12, Method: Composition-based stats.
Identities = 21/91 (23%), Positives = 42/91 (46%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ L+ +A+ + + ++ ++ +T+ ++ GG V + G G R+R R+
Sbjct: 6 MTKTQLVAALAEDM-GTDKKSASASLDAIVGLITREVSGGGAVTLPGVGKIYCRERPERM 64
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + I + V K LK+ +N
Sbjct: 65 VRNPATGEQIKKDADKVVKMTIAKALKDSVN 95
>gi|254443383|ref|ZP_05056859.1| DNA-binding protein HU [Verrucomicrobiae bacterium DG1235]
gi|198257691|gb|EDY81999.1| DNA-binding protein HU [Verrucomicrobiae bacterium DG1235]
Length = 104
Score = 75.6 bits (185), Expect = 2e-12, Method: Composition-based stats.
Identities = 31/94 (32%), Positives = 49/94 (52%), Gaps = 1/94 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K ++ I +K + ++ V M L+ + ALA G VE+R FG F V+KR AR+
Sbjct: 6 TKRDIVLRIFEKTKDIPQSKIQDTVQMTLDIILDALAEGRNVELRNFGVFEVQKRKARVG 65
Query: 62 RAPLAQKV-ISVEEKMVPFFRAGKNLKERLNSPD 94
R P + + + + V F+AGK LK ++ D
Sbjct: 66 RNPNRPETDVVIPTRAVVKFKAGKVLKAKIKDID 99
>gi|313185101|gb|ADR50115.1| histone-like protein HBbu [Borrelia burgdorferi]
Length = 108
Score = 75.6 bits (185), Expect = 2e-12, Method: Composition-based stats.
Identities = 32/93 (34%), Positives = 49/93 (52%), Gaps = 5/93 (5%)
Query: 3 KSSLIGTIA----KKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAA 58
KS ++ I+ N KL + + +++ EE+ L +E R FG+F VRKR
Sbjct: 11 KSDIVDQISLNIRNNNLKLEKKYIRLVIDAFFEELKGNLCLNNVIEFRSFGTFEVRKRKG 70
Query: 59 R-LARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R AR P + + V + V +FR GK+LKER+
Sbjct: 71 RLNARNPQTGEYVKVLDHHVAYFRPGKDLKERV 103
>gi|258512944|ref|YP_003189201.1| histone-like DNA-binding protein HU [Acetobacter pasteurianus IFO
3283-01]
gi|256634847|dbj|BAI00822.1| histone-like bacterial DNA-binding protein HU [Acetobacter
pasteurianus IFO 3283-01]
gi|256637902|dbj|BAI03870.1| histone-like bacterial DNA-binding protein HU [Acetobacter
pasteurianus IFO 3283-03]
gi|256640956|dbj|BAI06917.1| histone-like bacterial DNA-binding protein HU [Acetobacter
pasteurianus IFO 3283-07]
gi|256644011|dbj|BAI09965.1| histone-like bacterial DNA-binding protein HU [Acetobacter
pasteurianus IFO 3283-22]
gi|256647066|dbj|BAI13013.1| histone-like bacterial DNA-binding protein HU [Acetobacter
pasteurianus IFO 3283-26]
gi|256650119|dbj|BAI16059.1| histone-like bacterial DNA-binding protein HU [Acetobacter
pasteurianus IFO 3283-32]
gi|256653110|dbj|BAI19043.1| histone-like bacterial DNA-binding protein HU [Acetobacter
pasteurianus IFO 3283-01-42C]
gi|256656163|dbj|BAI22089.1| histone-like bacterial DNA-binding protein HU [Acetobacter
pasteurianus IFO 3283-12]
Length = 92
Score = 75.6 bits (185), Expect = 2e-12, Method: Composition-based stats.
Identities = 22/90 (24%), Positives = 37/90 (41%), Gaps = 1/90 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M LI I ++ +D + ++ + + +A A G I GFG F VR+ + R
Sbjct: 1 MNNHDLIERIVA-TTDISKKDAKTALDTVFAAIIEAAAEGDDTAIPGFGKFVVRQTSERK 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P + + F K +K+ L
Sbjct: 60 GRNPHTGAELVIPASRKLAFTPAKAVKDAL 89
>gi|257451811|ref|ZP_05617110.1| DNA-binding protein HU [Fusobacterium sp. 3_1_5R]
gi|317058367|ref|ZP_07922852.1| DNA-binding protein HU [Fusobacterium sp. 3_1_5R]
gi|313684043|gb|EFS20878.1| DNA-binding protein HU [Fusobacterium sp. 3_1_5R]
Length = 94
Score = 75.6 bits (185), Expect = 2e-12, Method: Composition-based stats.
Identities = 19/90 (21%), Positives = 42/90 (46%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M + + + + + ++ + ++ + + +A+ G IR FG + +RA R+
Sbjct: 1 MTRREFAKVLFQHGIFSSKLEADRNIEIIFQLIEKAIIEDGFFSIRHFGKIKLVERAPRM 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P + I+++ + FR + L ERL
Sbjct: 61 GRNPKTGEEINIDARKSIKFRPSRFLLERL 90
>gi|260206310|ref|ZP_05773801.1| DNA-binding protein HU, HupB [Mycobacterium tuberculosis K85]
gi|289575693|ref|ZP_06455920.1| histone-like DNA-binding protein hupB [Mycobacterium tuberculosis
K85]
gi|289540124|gb|EFD44702.1| histone-like DNA-binding protein hupB [Mycobacterium tuberculosis
K85]
Length = 214
Score = 75.6 bits (185), Expect = 2e-12, Method: Composition-based stats.
Identities = 29/90 (32%), Positives = 46/90 (51%), Gaps = 1/90 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI + +K + + V +++ + +A+ G V I GFG F R+RAAR+
Sbjct: 1 MNKAELIDVLTQKL-GSDRRQATAAVENVVDTIVRAVHKGDSVTITGFGVFEQRRRAARV 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
AR P + + V+ VP FR G K +
Sbjct: 60 ARNPRTGETVKVKPTSVPAFRPGAQFKAVV 89
>gi|227539321|ref|ZP_03969370.1| DNA-binding protein HU [Sphingobacterium spiritivorum ATCC 33300]
gi|227241003|gb|EEI91018.1| DNA-binding protein HU [Sphingobacterium spiritivorum ATCC 33300]
Length = 136
Score = 75.6 bits (185), Expect = 2e-12, Method: Composition-based stats.
Identities = 30/95 (31%), Positives = 48/95 (50%), Gaps = 1/95 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ +I I+ K L DV++ V + + ++ G V +RGFGSF V+KRA +
Sbjct: 43 MTKAEIIAEISNKT-GLEKVDVQETVEAFFKVVKNSMIGGENVYVRGFGSFVVKKRAEKT 101
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDS 95
AR I + E VP F+ K E++ + +
Sbjct: 102 ARNISKNTAIIIPEHFVPSFKPAKVFVEKVKNGNK 136
>gi|121638867|ref|YP_979091.1| putative DNA-binding protein HU homolog hupB [Mycobacterium bovis
BCG str. Pasteur 1173P2]
gi|224991359|ref|YP_002646048.1| putative DNA-binding protein HU homolog [Mycobacterium bovis BCG
str. Tokyo 172]
gi|4996103|dbj|BAA78330.1| MDP1 [Mycobacterium bovis]
gi|121494515|emb|CAL72996.1| Probable DNA-binding protein HU homolog hupB [Mycobacterium bovis
BCG str. Pasteur 1173P2]
gi|224774474|dbj|BAH27280.1| putative DNA-binding protein HU homolog [Mycobacterium bovis BCG
str. Tokyo 172]
gi|264669723|gb|ACY72210.1| laminin-binding histone-like protein [Mycobacterium bovis BCG]
Length = 205
Score = 75.6 bits (185), Expect = 2e-12, Method: Composition-based stats.
Identities = 29/90 (32%), Positives = 46/90 (51%), Gaps = 1/90 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI + +K + + V +++ + +A+ G V I GFG F R+RAAR+
Sbjct: 1 MNKAELIDVLTQKL-GSDRRQATAAVENVVDTIVRAVHKGDSVTITGFGVFEQRRRAARV 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
AR P + + V+ VP FR G K +
Sbjct: 60 ARNPRTGETVKVKPTSVPAFRPGAQFKAVV 89
>gi|15610123|ref|NP_217502.1| DNA-binding protein HU [Mycobacterium tuberculosis H37Rv]
gi|15842542|ref|NP_337579.1| DNA binding protein HU, putative [Mycobacterium tuberculosis
CDC1551]
gi|31794162|ref|NP_856655.1| DNA-binding protein HU [Mycobacterium bovis AF2122/97]
gi|148662836|ref|YP_001284359.1| DNA-binding protein hupB [Mycobacterium tuberculosis H37Ra]
gi|148824176|ref|YP_001288930.1| DNA-binding protein hupB (histone-like protein) [Mycobacterium
tuberculosis F11]
gi|167969993|ref|ZP_02552270.1| DNA-binding protein HU [Mycobacterium tuberculosis H37Ra]
gi|215404970|ref|ZP_03417151.1| DNA-binding protein HU, HupB [Mycobacterium tuberculosis 02_1987]
gi|215412830|ref|ZP_03421542.1| DNA-binding protein HU, HupB [Mycobacterium tuberculosis
94_M4241A]
gi|215428438|ref|ZP_03426357.1| DNA-binding protein HU, HupB [Mycobacterium tuberculosis T92]
gi|215431936|ref|ZP_03429855.1| DNA-binding protein HU, HupB [Mycobacterium tuberculosis EAS054]
gi|215447253|ref|ZP_03434005.1| DNA-binding protein HU, HupB [Mycobacterium tuberculosis T85]
gi|218754746|ref|ZP_03533542.1| DNA-binding protein HU, HupB [Mycobacterium tuberculosis GM 1503]
gi|219559018|ref|ZP_03538094.1| DNA-binding protein HU, HupB [Mycobacterium tuberculosis T17]
gi|253797921|ref|YP_003030922.1| histone-like DNA-binding protein hupB [Mycobacterium tuberculosis
KZN 1435]
gi|254233069|ref|ZP_04926396.1| DNA-binding protein hupB (histone-like protein) [Mycobacterium
tuberculosis C]
gi|254365619|ref|ZP_04981664.1| DNA-binding protein hupB (histone-like protein) [Mycobacterium
tuberculosis str. Haarlem]
gi|254552063|ref|ZP_05142510.1| DNA-binding protein HU, HupB [Mycobacterium tuberculosis '98-R604
INH-RIF-EM']
gi|260188010|ref|ZP_05765484.1| DNA-binding protein HU, HupB [Mycobacterium tuberculosis CPHL_A]
gi|260202128|ref|ZP_05769619.1| DNA-binding protein HU, HupB [Mycobacterium tuberculosis T46]
gi|289444550|ref|ZP_06434294.1| histone-like DNA-binding protein hupB [Mycobacterium tuberculosis
T46]
gi|289448658|ref|ZP_06438402.1| histone-like DNA-binding protein hupB [Mycobacterium tuberculosis
CPHL_A]
gi|289553224|ref|ZP_06442434.1| predicted protein [Mycobacterium tuberculosis KZN 605]
gi|289571185|ref|ZP_06451412.1| histone-like DNA-binding protein hupB [Mycobacterium tuberculosis
T17]
gi|289746790|ref|ZP_06506168.1| DNA-binding protein hupB (histone-like protein) [Mycobacterium
tuberculosis 02_1987]
gi|289751663|ref|ZP_06511041.1| histone-like DNA-binding protein hupB [Mycobacterium tuberculosis
T92]
gi|289755102|ref|ZP_06514480.1| predicted protein [Mycobacterium tuberculosis EAS054]
gi|289759111|ref|ZP_06518489.1| predicted protein [Mycobacterium tuberculosis T85]
gi|289763166|ref|ZP_06522544.1| DNA-binding protein hupB (histone-like protein) [Mycobacterium
tuberculosis GM 1503]
gi|294993927|ref|ZP_06799618.1| DNA-binding protein HU, HupB [Mycobacterium tuberculosis 210]
gi|297635611|ref|ZP_06953391.1| DNA-binding protein HU, HupB [Mycobacterium tuberculosis KZN
4207]
gi|297732609|ref|ZP_06961727.1| DNA-binding protein HU, HupB [Mycobacterium tuberculosis KZN
R506]
gi|298526456|ref|ZP_07013865.1| DNA-binding protein hupB (histone-like protein) [Mycobacterium
tuberculosis 94_M4241A]
gi|306777279|ref|ZP_07415616.1| hypothetical protein TMAG_01192 [Mycobacterium tuberculosis
SUMu001]
gi|306781190|ref|ZP_07419527.1| hypothetical protein TMBG_03136 [Mycobacterium tuberculosis
SUMu002]
gi|306785829|ref|ZP_07424151.1| hypothetical protein TMCG_02241 [Mycobacterium tuberculosis
SUMu003]
gi|306794680|ref|ZP_07432982.1| hypothetical protein TMEG_02256 [Mycobacterium tuberculosis
SUMu005]
gi|306798923|ref|ZP_07437225.1| hypothetical protein TMFG_00187 [Mycobacterium tuberculosis
SUMu006]
gi|306804768|ref|ZP_07441436.1| hypothetical protein TMHG_02196 [Mycobacterium tuberculosis
SUMu008]
gi|306808962|ref|ZP_07445630.1| hypothetical protein TMGG_02527 [Mycobacterium tuberculosis
SUMu007]
gi|306969060|ref|ZP_07481721.1| hypothetical protein TMIG_02492 [Mycobacterium tuberculosis
SUMu009]
gi|306973397|ref|ZP_07486058.1| hypothetical protein TMJG_01980 [Mycobacterium tuberculosis
SUMu010]
gi|307081105|ref|ZP_07490275.1| hypothetical protein TMKG_03422 [Mycobacterium tuberculosis
SUMu011]
gi|307085709|ref|ZP_07494822.1| hypothetical protein TMLG_01487 [Mycobacterium tuberculosis
SUMu012]
gi|313659941|ref|ZP_07816821.1| DNA-binding protein HU, HupB [Mycobacterium tuberculosis KZN
V2475]
gi|6014921|sp|P95109|DBH_MYCTU RecName: Full=DNA-binding protein HU homolog; AltName: Full=21
kDa laminin-2-binding protein; AltName: Full=28 kDa
iron-regulated protein; Short=Irep-28; AltName:
Full=Histone-like protein; Short=Hlp
gi|38605697|sp|Q9XB18|DBH_MYCBO RecName: Full=DNA-binding protein HU homolog; AltName:
Full=Histone-like protein; Short=Hlp
gi|1694845|emb|CAB05427.1| PROBABLE DNA-BINDING PROTEIN HU HOMOLOG HUPB (HISTONE-LIKE
PROTEIN) (HLP) (21-KDA LAMININ-2-BINDING PROTEIN)
[Mycobacterium tuberculosis H37Rv]
gi|13882853|gb|AAK47393.1| DNA binding protein HU, putative [Mycobacterium tuberculosis
CDC1551]
gi|31619757|emb|CAD96697.1| PROBABLE DNA-BINDING PROTEIN HU HOMOLOG HUPB (HISTONE-LIKE
PROTEIN) (HLP) (21-KDA LAMININ-2-BINDING PROTEIN)
[Mycobacterium bovis AF2122/97]
gi|124602128|gb|EAY61138.1| DNA-binding protein hupB (histone-like protein) [Mycobacterium
tuberculosis C]
gi|134151132|gb|EBA43177.1| DNA-binding protein hupB (histone-like protein) [Mycobacterium
tuberculosis str. Haarlem]
gi|148506988|gb|ABQ74797.1| DNA-binding protein hupB [Mycobacterium tuberculosis H37Ra]
gi|148722703|gb|ABR07328.1| DNA-binding protein hupB (histone-like protein) [Mycobacterium
tuberculosis F11]
gi|253319424|gb|ACT24027.1| histone-like DNA-binding protein hupB [Mycobacterium tuberculosis
KZN 1435]
gi|289417469|gb|EFD14709.1| histone-like DNA-binding protein hupB [Mycobacterium tuberculosis
T46]
gi|289421616|gb|EFD18817.1| histone-like DNA-binding protein hupB [Mycobacterium tuberculosis
CPHL_A]
gi|289437856|gb|EFD20349.1| predicted protein [Mycobacterium tuberculosis KZN 605]
gi|289544939|gb|EFD48587.1| histone-like DNA-binding protein hupB [Mycobacterium tuberculosis
T17]
gi|289687318|gb|EFD54806.1| DNA-binding protein hupB (histone-like protein) [Mycobacterium
tuberculosis 02_1987]
gi|289692250|gb|EFD59679.1| histone-like DNA-binding protein hupB [Mycobacterium tuberculosis
T92]
gi|289695689|gb|EFD63118.1| predicted protein [Mycobacterium tuberculosis EAS054]
gi|289710672|gb|EFD74688.1| DNA-binding protein hupB (histone-like protein) [Mycobacterium
tuberculosis GM 1503]
gi|289714675|gb|EFD78687.1| predicted protein [Mycobacterium tuberculosis T85]
gi|298496250|gb|EFI31544.1| DNA-binding protein hupB (histone-like protein) [Mycobacterium
tuberculosis 94_M4241A]
gi|308214329|gb|EFO73728.1| hypothetical protein TMAG_01192 [Mycobacterium tuberculosis
SUMu001]
gi|308325973|gb|EFP14824.1| hypothetical protein TMBG_03136 [Mycobacterium tuberculosis
SUMu002]
gi|308329504|gb|EFP18355.1| hypothetical protein TMCG_02241 [Mycobacterium tuberculosis
SUMu003]
gi|308337000|gb|EFP25851.1| hypothetical protein TMEG_02256 [Mycobacterium tuberculosis
SUMu005]
gi|308340814|gb|EFP29665.1| hypothetical protein TMFG_00187 [Mycobacterium tuberculosis
SUMu006]
gi|308344677|gb|EFP33528.1| hypothetical protein TMGG_02527 [Mycobacterium tuberculosis
SUMu007]
gi|308348627|gb|EFP37478.1| hypothetical protein TMHG_02196 [Mycobacterium tuberculosis
SUMu008]
gi|308353353|gb|EFP42204.1| hypothetical protein TMIG_02492 [Mycobacterium tuberculosis
SUMu009]
gi|308357197|gb|EFP46048.1| hypothetical protein TMJG_01980 [Mycobacterium tuberculosis
SUMu010]
gi|308361151|gb|EFP50002.1| hypothetical protein TMKG_03422 [Mycobacterium tuberculosis
SUMu011]
gi|308364744|gb|EFP53595.1| hypothetical protein TMLG_01487 [Mycobacterium tuberculosis
SUMu012]
gi|323718365|gb|EGB27539.1| histone-like DNA-binding protein hupB [Mycobacterium tuberculosis
CDC1551A]
gi|326904600|gb|EGE51533.1| histone-like DNA-binding protein hupB [Mycobacterium tuberculosis
W-148]
gi|328457696|gb|AEB03119.1| hypothetical protein TBSG_00990 [Mycobacterium tuberculosis KZN
4207]
Length = 214
Score = 75.6 bits (185), Expect = 2e-12, Method: Composition-based stats.
Identities = 29/90 (32%), Positives = 46/90 (51%), Gaps = 1/90 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI + +K + + V +++ + +A+ G V I GFG F R+RAAR+
Sbjct: 1 MNKAELIDVLTQKL-GSDRRQATAAVENVVDTIVRAVHKGDSVTITGFGVFEQRRRAARV 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
AR P + + V+ VP FR G K +
Sbjct: 60 ARNPRTGETVKVKPTSVPAFRPGAQFKAVV 89
>gi|190571020|ref|YP_001975378.1| DNA-binding protein, HU family [Wolbachia endosymbiont of Culex
quinquefasciatus Pel]
gi|213019541|ref|ZP_03335347.1| DNA-binding protein, HU family [Wolbachia endosymbiont of Culex
quinquefasciatus JHB]
gi|190357292|emb|CAQ54720.1| DNA-binding protein, HU family [Wolbachia endosymbiont of Culex
quinquefasciatus Pel]
gi|212994963|gb|EEB55605.1| DNA-binding protein, HU family [Wolbachia endosymbiont of Culex
quinquefasciatus JHB]
Length = 103
Score = 75.6 bits (185), Expect = 2e-12, Method: Composition-based stats.
Identities = 26/102 (25%), Positives = 46/102 (45%), Gaps = 4/102 (3%)
Query: 1 MIKSSLIGTIAK----KNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKR 56
M K +I + + +N + D+ + +M +E + L+ G + + G G+FS
Sbjct: 1 MSKEDIINRLKQDCVSQNIDITKSDLSNVHDMFMEMIKDQLSRKGEIRLHGIGTFSTVIN 60
Query: 57 AARLARAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDSTLS 98
R R P ++++V EK F+ + L LNS LS
Sbjct: 61 KERKCRNPQNGEIMTVPEKTRVKFKISQTLLSILNSKQKVLS 102
>gi|222480977|ref|YP_002567214.1| histone family protein DNA-binding protein [Halorubrum
lacusprofundi ATCC 49239]
gi|222453879|gb|ACM58144.1| histone family protein DNA-binding protein [Halorubrum
lacusprofundi ATCC 49239]
Length = 206
Score = 75.6 bits (185), Expect = 2e-12, Method: Composition-based stats.
Identities = 27/87 (31%), Positives = 41/87 (47%), Gaps = 7/87 (8%)
Query: 12 KKNPKLNYQDVEKIVNMLLEEMTQALANGGR-------VEIRGFGSFSVRKRAARLARAP 64
+ L+ D + + + T+AL G R E +GFG+FS+ KR+AR R P
Sbjct: 120 NSHEGLSEDDAKWALEAFINATTKALKKGDRLSLGEEEDENKGFGTFSISKRSARTGRNP 179
Query: 65 LAQKVISVEEKMVPFFRAGKNLKERLN 91
K I + K V F+AG L + +
Sbjct: 180 QTGKEIQIAAKNVVKFKAGAELSKAVK 206
Score = 64.0 bits (155), Expect = 7e-09, Method: Composition-based stats.
Identities = 23/64 (35%), Positives = 38/64 (59%), Gaps = 1/64 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI ++A ++ L+ D ++ ++ + T+AL G + GFGSFS+ KR+AR
Sbjct: 1 MNKAELIESMASES-GLSKSDAKRALDTFTDATTKALEKGDSAVLVGFGSFSISKRSART 59
Query: 61 ARAP 64
R P
Sbjct: 60 GRNP 63
>gi|163745273|ref|ZP_02152633.1| DNA-binding protein HU [Oceanibulbus indolifex HEL-45]
gi|161382091|gb|EDQ06500.1| DNA-binding protein HU [Oceanibulbus indolifex HEL-45]
Length = 95
Score = 75.6 bits (185), Expect = 2e-12, Method: Composition-based stats.
Identities = 20/92 (21%), Positives = 41/92 (44%), Gaps = 1/92 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ L+ +A++ + + ++ + +T+ ++ GG V + G G R+R R+
Sbjct: 5 MTKTQLVAALAEEM-DTDKKSAGAALDAVCNLITREVSAGGAVTLPGVGKIYCRERPERM 63
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P + + V K LK+ +N
Sbjct: 64 VRNPATGEQFKKDADKVVKMTIAKALKDSVNE 95
>gi|238749769|ref|ZP_04611274.1| Integration host factor subunit beta [Yersinia rohdei ATCC 43380]
gi|238712424|gb|EEQ04637.1| Integration host factor subunit beta [Yersinia rohdei ATCC 43380]
Length = 69
Score = 75.6 bits (185), Expect = 2e-12, Method: Composition-based stats.
Identities = 31/66 (46%), Positives = 41/66 (62%)
Query: 26 VNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLARAPLAQKVISVEEKMVPFFRAGKN 85
+ +LE M LA G R+EIRGFGSFS+ RA R+ R P + +E K VP F+ GK
Sbjct: 1 MKEMLEHMAGTLAEGERIEIRGFGSFSLHYRAPRVGRNPKTGTKVELEGKYVPHFKPGKE 60
Query: 86 LKERLN 91
L++R N
Sbjct: 61 LRDRAN 66
>gi|126738405|ref|ZP_01754110.1| DNA-binding protein HU [Roseobacter sp. SK209-2-6]
gi|126720204|gb|EBA16910.1| DNA-binding protein HU [Roseobacter sp. SK209-2-6]
Length = 97
Score = 75.6 bits (185), Expect = 2e-12, Method: Composition-based stats.
Identities = 22/93 (23%), Positives = 40/93 (43%), Gaps = 1/93 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ L+ T+A++ + + + + +T+ ++ GG V + G G R+R R
Sbjct: 5 MTKTQLVATLAEEM-GADKKTAGAALEAVCALITREVSGGGAVTLPGVGKIYCRERPERE 63
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSP 93
R P + E V K LK+ +N
Sbjct: 64 VRNPATGEKFMKEADKVVKMTIAKALKDSVNGE 96
>gi|319898983|ref|YP_004159076.1| integration host factor alpha subunit [Bartonella clarridgeiae
73]
gi|319402947|emb|CBI76498.1| integration host factor alpha subunit [Bartonella clarridgeiae
73]
Length = 103
Score = 75.6 bits (185), Expect = 2e-12, Method: Composition-based stats.
Identities = 24/89 (26%), Positives = 47/89 (52%), Gaps = 1/89 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
++ L G + +K L++ + +V ++L E+ +L G V++ F +F VR ++ R+
Sbjct: 7 TRADLAGAVCRK-VGLSHTESADLVELVLNEICNSLVKGEMVKLSSFATFQVRNKSERIG 65
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P S+ + V F+A LK+R+
Sbjct: 66 RNPKTGVEASIPPRRVVTFKAANVLKKRI 94
>gi|197294717|ref|YP_001799258.1| DNA-binding protein HU [Candidatus Phytoplasma australiense]
gi|171854044|emb|CAM12017.1| DNA-binding protein HU [Candidatus Phytoplasma australiense]
Length = 94
Score = 75.6 bits (185), Expect = 2e-12, Method: Composition-based stats.
Identities = 20/91 (21%), Positives = 46/91 (50%), Gaps = 4/91 (4%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQAL---ANGGRVEIRGFGSFSVRKRA 57
M + +A+K+ ++ ++ KI++ + + +++ ++ + GFG+F ++R
Sbjct: 1 MNTLDFLKILAEKH-NVSQKEAAKILDSFVAAIYESVQSFEENEKLTLTGFGTFGAKQRT 59
Query: 58 ARLARAPLAQKVISVEEKMVPFFRAGKNLKE 88
R + P + I + K VP F+ KN K+
Sbjct: 60 TRQGKNPRTGETIDIPAKKVPVFKFSKNFKD 90
>gi|317125453|ref|YP_004099565.1| bacterial nucleoid protein Hbs [Intrasporangium calvum DSM 43043]
gi|315589541|gb|ADU48838.1| bacterial nucleoid protein Hbs [Intrasporangium calvum DSM 43043]
Length = 228
Score = 75.6 bits (185), Expect = 2e-12, Method: Composition-based stats.
Identities = 30/100 (30%), Positives = 52/100 (52%), Gaps = 3/100 (3%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LIG + + + + + +L+ + + +A GG+V I GFG+F RAAR
Sbjct: 1 MNKAELIGALEARLG--SRRVASDALEAVLDIVIREVAKGGKVGITGFGTFERANRAART 58
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDSTLSNS 100
R P + +++ +P FRAG N K+ + S L+ +
Sbjct: 59 GRNPKTGDTVKIKKTRIPKFRAGTNFKDIV-SGQKKLAKT 97
>gi|325283874|ref|YP_004256415.1| histone family protein DNA-binding protein [Deinococcus
proteolyticus MRP]
gi|324315683|gb|ADY26798.1| histone family protein DNA-binding protein [Deinococcus
proteolyticus MRP]
Length = 94
Score = 75.6 bits (185), Expect = 2e-12, Method: Composition-based stats.
Identities = 20/95 (21%), Positives = 40/95 (42%), Gaps = 6/95 (6%)
Query: 1 MIK-----SSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRK 55
M K + L I+++ L+ + +V + M AL G V + G+FS+ +
Sbjct: 1 MNKGKVAKAELAARISEQT-GLSRKQAGDVVASAVGLMVDALKQGRTVGLPNLGTFSISQ 59
Query: 56 RAARLARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
+ R P + I++ F+ L+++L
Sbjct: 60 TSQRQGVRPGTTERITIPAGKKVRFKISTGLRDQL 94
>gi|297571677|ref|YP_003697451.1| histone family protein DNA-binding protein [Arcanobacterium
haemolyticum DSM 20595]
gi|296932024|gb|ADH92832.1| histone family protein DNA-binding protein [Arcanobacterium
haemolyticum DSM 20595]
Length = 93
Score = 75.6 bits (185), Expect = 2e-12, Method: Composition-based stats.
Identities = 25/89 (28%), Positives = 42/89 (47%), Gaps = 1/89 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
++ LI IA++ + D +K ++ L + ++LA G V+I G S +RAAR
Sbjct: 4 NRTELIAKIAEE-ASITKTDADKAISALQSVLVESLAKGEAVKITGLMSVERTERAARKG 62
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P + I + AG LK+ +
Sbjct: 63 RNPRTGEEIKIPAGYGVKISAGSTLKKAV 91
>gi|154247521|ref|YP_001418479.1| histone family protein DNA-binding protein [Xanthobacter
autotrophicus Py2]
gi|154161606|gb|ABS68822.1| histone family protein DNA-binding protein [Xanthobacter
autotrophicus Py2]
Length = 92
Score = 75.6 bits (185), Expect = 2e-12, Method: Composition-based stats.
Identities = 30/90 (33%), Positives = 44/90 (48%), Gaps = 1/90 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ LI +A++ + + + +AL G V++ GFGSFSV RAAR
Sbjct: 3 TKNELIAAVAEEAKLTKTAAAAAVDATF-DIIAKALQEGEEVKLIGFGSFSVVTRAAREG 61
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P K + ++ P F GK LKE +N
Sbjct: 62 RNPRTGKPVKIKASKAPKFTPGKGLKEAVN 91
>gi|26987711|ref|NP_743136.1| histone family protein DNA-binding protein [Pseudomonas putida
KT2440]
gi|148546256|ref|YP_001266358.1| histone family protein DNA-binding protein [Pseudomonas putida
F1]
gi|167031996|ref|YP_001667227.1| histone family protein DNA-binding protein [Pseudomonas putida
GB-1]
gi|325278215|ref|ZP_08143708.1| histone family protein DNA-binding protein [Pseudomonas sp.
TJI-51]
gi|14028719|gb|AAK52476.1|AF345629_1 histone-like protein HU form N [Pseudomonas putida]
gi|24982398|gb|AAN66600.1|AE016287_11 DNA-binding protein HU, form N [Pseudomonas putida KT2440]
gi|148510314|gb|ABQ77174.1| histone family protein DNA-binding protein [Pseudomonas putida
F1]
gi|166858484|gb|ABY96891.1| histone family protein DNA-binding protein [Pseudomonas putida
GB-1]
gi|313497342|gb|ADR58708.1| HupN [Pseudomonas putida BIRD-1]
gi|324096655|gb|EGB95008.1| histone family protein DNA-binding protein [Pseudomonas sp.
TJI-51]
Length = 93
Score = 75.6 bits (185), Expect = 2e-12, Method: Composition-based stats.
Identities = 24/91 (26%), Positives = 35/91 (38%), Gaps = 1/91 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K LI IA+ + + L + + L NG + + G G V +R AR
Sbjct: 4 TKDQLIADIAESIAA-PKATAKNALEQLGQIVADQLENGAEITLPGIGKLKVSERPARTG 62
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P I + K V F K L + +N
Sbjct: 63 RNPSTGAAIEIAAKKVVKFVPAKVLTDAINK 93
>gi|296171286|ref|ZP_06852690.1| histone family protein [Mycobacterium parascrofulaceum ATCC
BAA-614]
gi|295894254|gb|EFG74011.1| histone family protein [Mycobacterium parascrofulaceum ATCC
BAA-614]
Length = 211
Score = 75.6 bits (185), Expect = 2e-12, Method: Composition-based stats.
Identities = 29/90 (32%), Positives = 46/90 (51%), Gaps = 1/90 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI + +K + + V +++ + +A+ G V I GFG F R+RAAR+
Sbjct: 1 MNKAELIDVLTQKL-NTDRRQATAAVENVVDTIVRAVHKGDSVTITGFGVFEQRRRAARV 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
AR P + + V+ VP FR G K +
Sbjct: 60 ARNPRTGETVKVKPTSVPAFRPGAQFKAVV 89
>gi|165932789|ref|YP_001649578.1| DNA-binding protein HU [Rickettsia rickettsii str. Iowa]
gi|165907876|gb|ABY72172.1| DNA-binding protein HU [Rickettsia rickettsii str. Iowa]
Length = 139
Score = 75.6 bits (185), Expect = 2e-12, Method: Composition-based stats.
Identities = 28/99 (28%), Positives = 46/99 (46%), Gaps = 8/99 (8%)
Query: 1 MIKSSLIGTI--------AKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFS 52
M K+ I + + L + EK +N++L+ + A+ + + I GFGSF
Sbjct: 41 MNKTEFIAFMTDHGHNHKHASHKTLTKAEAEKALNLVLDSVISAIKSHHNINITGFGSFE 100
Query: 53 VRKRAARLARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
+ R AR R P + ++ P FRAG+ +KE N
Sbjct: 101 IHHRKAREGRNPKTGAKMKIDAYNQPTFRAGRKMKEACN 139
>gi|145351643|ref|XP_001420178.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144580411|gb|ABO98471.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 115
Score = 75.6 bits (185), Expect = 2e-12, Method: Composition-based stats.
Identities = 23/93 (24%), Positives = 45/93 (48%), Gaps = 1/93 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K++LI +AK+ + V +++N L+ ++ + G +V + FG+F+ ++R AR
Sbjct: 24 NKTTLIDHVAKETGE-TKASVGRVLNATLDAISATVRAGDKVALSKFGTFARKQRKARDG 82
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLNSPD 94
R PL + + P F A K+ +
Sbjct: 83 RNPLTGAALKIPAANYPSFSASSTFKDLVKGKK 115
>gi|258651712|ref|YP_003200868.1| histone family protein DNA-binding protein [Nakamurella
multipartita DSM 44233]
gi|258554937|gb|ACV77879.1| histone family protein DNA-binding protein [Nakamurella
multipartita DSM 44233]
Length = 222
Score = 75.6 bits (185), Expect = 2e-12, Method: Composition-based stats.
Identities = 29/90 (32%), Positives = 47/90 (52%), Gaps = 1/90 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI +A++ + + + V +++ + + + G V I GFG F R RAAR
Sbjct: 1 MNKTDLINQLAERLDG-DKKKAQVAVEGVIDLIQREVQKGRSVSISGFGVFEKRARAART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
AR P + + V + VP FR GK K+ +
Sbjct: 60 ARNPRTGEAVKVRKTNVPAFRPGKYFKDVI 89
>gi|20137641|sp|Q92J57|DBH_RICCN RecName: Full=DNA-binding protein HU
Length = 99
Score = 75.6 bits (185), Expect = 2e-12, Method: Composition-based stats.
Identities = 28/99 (28%), Positives = 46/99 (46%), Gaps = 8/99 (8%)
Query: 1 MIKSSLIGTI--------AKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFS 52
M K+ I + + L + EK +N++L+ + A+ + + I GFGSF
Sbjct: 1 MNKTEFIAFMTDHGHNHKHASHKTLTKAEAEKALNLVLDSVISAIKSHHNINITGFGSFE 60
Query: 53 VRKRAARLARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
+ R AR R P + ++ P FRAG+ +KE N
Sbjct: 61 IHHRKAREGRNPKTGAKMKIDAYNQPTFRAGRKMKEACN 99
>gi|255327422|ref|ZP_05368496.1| HU_IHF family transcriptional regulator [Rothia mucilaginosa ATCC
25296]
gi|255295702|gb|EET75045.1| HU_IHF family transcriptional regulator [Rothia mucilaginosa ATCC
25296]
Length = 94
Score = 75.6 bits (185), Expect = 2e-12, Method: Composition-based stats.
Identities = 19/89 (21%), Positives = 41/89 (46%), Gaps = 1/89 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
++ L+ +A+K+ K + V +++ + + +++ G ++ I G+ + RAAR
Sbjct: 4 NRTELVAEVAEKSGK-SQATVNAVLDAVFQVFESSVSKGEKITIPGWMAIERTDRAARTG 62
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P + I + AG LK +
Sbjct: 63 RNPQTGETIQIPAGHGVKLTAGSKLKAAV 91
>gi|255690691|ref|ZP_05414366.1| DNA-binding protein HU [Bacteroides finegoldii DSM 17565]
gi|260623721|gb|EEX46592.1| DNA-binding protein HU [Bacteroides finegoldii DSM 17565]
Length = 93
Score = 75.6 bits (185), Expect = 2e-12, Method: Composition-based stats.
Identities = 22/94 (23%), Positives = 44/94 (46%), Gaps = 1/94 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ ++ +A++ + +V +E + ++ G V +RGFGSF V++RA ++
Sbjct: 1 MTKADIVARVAQQT-GVEKAVAMTVVEAFMETVKDSMIAGNDVFLRGFGSFVVKQRAEKV 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSPD 94
AR I + +P F+ K + +
Sbjct: 60 ARNISKNTTIVIPAHSIPAFKPAKTFLDAVKEGK 93
>gi|301059179|ref|ZP_07200119.1| integration host factor subunit alpha [delta proteobacterium
NaphS2]
gi|300446727|gb|EFK10552.1| integration host factor subunit alpha [delta proteobacterium
NaphS2]
Length = 94
Score = 75.2 bits (184), Expect = 2e-12, Method: Composition-based stats.
Identities = 24/91 (26%), Positives = 45/91 (49%), Gaps = 1/91 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K +I +I + L+ LLE + + L NG + I GFG F V+++A+R
Sbjct: 4 TKEKIIDSIYHQ-VGLSKSQSRAAAEGLLEIIKETLENGEDLLISGFGKFLVKEKASRRG 62
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P + + + + V F+ L++++N+
Sbjct: 63 RNPQTTEDLQLRARRVVVFKTSGVLRDKINA 93
>gi|218667767|ref|YP_002425678.1| DNA-binding protein HU family protein [Acidithiobacillus
ferrooxidans ATCC 23270]
gi|218519980|gb|ACK80566.1| DNA-binding protein HU family protein [Acidithiobacillus
ferrooxidans ATCC 23270]
Length = 91
Score = 75.2 bits (184), Expect = 2e-12, Method: Composition-based stats.
Identities = 24/83 (28%), Positives = 40/83 (48%)
Query: 3 KSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLAR 62
K L ++ + E IV L+E + + ++ G +V I FG+F RAAR+ R
Sbjct: 7 KKDLAKSLVDAGLAPTVRKAEDIVQHLVESIVELVSEGHKVRIHQFGTFQQIHRAARMGR 66
Query: 63 APLAQKVISVEEKMVPFFRAGKN 85
P + + E+ V F+A K+
Sbjct: 67 NPQTGGELEIPERKVLTFKASKS 89
>gi|218264143|ref|ZP_03478035.1| hypothetical protein PRABACTJOHN_03725 [Parabacteroides johnsonii
DSM 18315]
gi|218222261|gb|EEC94911.1| hypothetical protein PRABACTJOHN_03725 [Parabacteroides johnsonii
DSM 18315]
Length = 99
Score = 75.2 bits (184), Expect = 2e-12, Method: Composition-based stats.
Identities = 26/99 (26%), Positives = 47/99 (47%), Gaps = 1/99 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ ++ IAK+ + V +V +E + A+ G V +RGFGSF ++ RA ++
Sbjct: 1 MTKAEIVARIAKQT-GAEKEVVMNVVEAFMESVKGAMIEGNEVFLRGFGSFIIKHRAEKV 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDSTLSN 99
AR I + +P F+ K + +N ++
Sbjct: 60 ARNISQNTTIVIPAHSIPAFKPSKAFADMVNGKNNKDKK 98
>gi|281425612|ref|ZP_06256525.1| DNA-binding protein HU [Prevotella oris F0302]
gi|299140824|ref|ZP_07033962.1| DNA-binding protein HU [Prevotella oris C735]
gi|281400199|gb|EFB31030.1| DNA-binding protein HU [Prevotella oris F0302]
gi|298577790|gb|EFI49658.1| DNA-binding protein HU [Prevotella oris C735]
Length = 97
Score = 75.2 bits (184), Expect = 2e-12, Method: Composition-based stats.
Identities = 28/92 (30%), Positives = 46/92 (50%), Gaps = 1/92 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M I +A ++ D +K+VN L+E M + G V + GFG+F V+KR R+
Sbjct: 1 MNNKEFIAELALRS-GYTQADAQKLVNTLIEGMGDSFEAGENVSLTGFGTFEVKKRMERV 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
P + V K+V F+ ++KE+L +
Sbjct: 60 VVNPSTGMRMLVPPKLVLGFKPNASIKEKLKN 91
>gi|237737338|ref|ZP_04567819.1| DNA-binding protein HU [Fusobacterium mortiferum ATCC 9817]
gi|229421200|gb|EEO36247.1| DNA-binding protein HU [Fusobacterium mortiferum ATCC 9817]
Length = 90
Score = 75.2 bits (184), Expect = 3e-12, Method: Composition-based stats.
Identities = 30/91 (32%), Positives = 50/91 (54%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K I A+K L ++ EK +N+ LE + ++L G V G+G + V +RAAR
Sbjct: 1 MTKKEFIELYAEK-GNLTKKEAEKNINLFLESVEESLVKGDEVTFVGWGKWEVVERAARE 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R+P ++++I V K F+ GK L +++
Sbjct: 60 VRSPQSKEIIKVPAKKAVKFKVGKLLADKIK 90
>gi|150025716|ref|YP_001296542.1| histone-like DNA-binding protein HU-alpha [Flavobacterium
psychrophilum JIP02/86]
gi|149772257|emb|CAL43733.1| Histone-like bacterial DNA-binding protein HU-alpha
[Flavobacterium psychrophilum JIP02/86]
Length = 98
Score = 75.2 bits (184), Expect = 3e-12, Method: Composition-based stats.
Identities = 28/99 (28%), Positives = 47/99 (47%), Gaps = 1/99 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ ++ I++K L DV+ V +EE+ +L G V +RGFGSF V+ RA +
Sbjct: 1 MTKADIVAKISEKL-GLEKGDVQATVETFMEEVKNSLETGDNVYLRGFGSFIVKTRAEKT 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDSTLSN 99
R I + +P F+ K E + + + +
Sbjct: 60 GRNISKNTTIKIPAHNIPAFKPAKVFVEGVKTNNEATTK 98
>gi|225850916|ref|YP_002731150.1| histone family protein DNA-binding protein [Persephonella marina
EX-H1]
gi|225645576|gb|ACO03762.1| histone family protein DNA-binding protein [Persephonella marina
EX-H1]
Length = 96
Score = 75.2 bits (184), Expect = 3e-12, Method: Composition-based stats.
Identities = 34/94 (36%), Positives = 58/94 (61%), Gaps = 4/94 (4%)
Query: 1 MIKSSLIG-TIAKKNPKLNYQDVEKIVNMLLEEMTQALANGG---RVEIRGFGSFSVRKR 56
M K+ ++ + KNP+++ +DV +VN + E++ Q L G +V+I GFG+F V+KR
Sbjct: 1 MTKAEIVEWILKNKNPEVSKKDVSDVVNAIFEKIIQELVTGEDGHKVQISGFGTFIVKKR 60
Query: 57 AARLARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
A ++ R P ++ + E+ F+AGK+LKE L
Sbjct: 61 APKIGRNPKTKEEKLIPERFGISFKAGKHLKESL 94
>gi|154493959|ref|ZP_02033279.1| hypothetical protein PARMER_03303 [Parabacteroides merdae ATCC
43184]
gi|154086219|gb|EDN85264.1| hypothetical protein PARMER_03303 [Parabacteroides merdae ATCC
43184]
Length = 91
Score = 75.2 bits (184), Expect = 3e-12, Method: Composition-based stats.
Identities = 26/92 (28%), Positives = 51/92 (55%), Gaps = 1/92 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M +S LI +A+K LN +DV++ ++ + + + Q + G R+ + GFGSF R +++R
Sbjct: 1 MNRSQLINILAQKT-GLNKKDVKRTIDEMQKLIVQEVKEGQRICLHGFGSFKPRFQSSRP 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
AR + + + + F+ +L E++N
Sbjct: 60 ARNLKNGTAVQLSPRTIIHFKCAPHLLEQMNK 91
>gi|291514301|emb|CBK63511.1| Bacterial nucleoid DNA-binding protein [Alistipes shahii WAL
8301]
Length = 96
Score = 75.2 bits (184), Expect = 3e-12, Method: Composition-based stats.
Identities = 23/96 (23%), Positives = 43/96 (44%), Gaps = 1/96 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ L+ I + + E +V + + + + G V +RGFGSF V++RA ++
Sbjct: 1 MTKAELVALITHQT-GVEKTAAEAVVEAFMRNIKETMIAGEDVFLRGFGSFIVKERAEKV 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDST 96
AR + + +P F+ K E + +
Sbjct: 60 ARNITKNTTMVIPAHSIPAFKPSKVFLEAVKEGNKK 95
>gi|304372872|ref|YP_003856081.1| Histone-like DNA-binding protein [Mycoplasma hyorhinis HUB-1]
gi|304309063|gb|ADM21543.1| Histone-like DNA-binding protein [Mycoplasma hyorhinis HUB-1]
gi|330723543|gb|AEC45913.1| nucleoid DNA-binding protein [Mycoplasma hyorhinis MCLD]
Length = 90
Score = 75.2 bits (184), Expect = 3e-12, Method: Composition-based stats.
Identities = 27/91 (29%), Positives = 47/91 (51%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K L+ I + +L ++D E ++N + +T + G +V I GFG+F +
Sbjct: 1 MNKKELLDLIVDET-QLTHKDTEAVLNSFFDIVTSQIKRGDKVVIAGFGTFQGVFKEQST 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
A P+ + +++ KMV F+ KNLK+ L
Sbjct: 60 AINPITKSEVNIPAKMVAKFKPSKNLKDMLK 90
>gi|300774175|ref|ZP_07084043.1| DNA-binding protein HU [Sphingobacterium spiritivorum ATCC 33861]
gi|300758986|gb|EFK55814.1| DNA-binding protein HU [Sphingobacterium spiritivorum ATCC 33861]
Length = 135
Score = 75.2 bits (184), Expect = 3e-12, Method: Composition-based stats.
Identities = 30/95 (31%), Positives = 48/95 (50%), Gaps = 1/95 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ +I I+ K L DV++ V + + ++ G V +RGFGSF V+KRA +
Sbjct: 42 MTKAEIIAEISNKT-GLEKVDVQETVEAFFKVVKNSMIGGENVYVRGFGSFVVKKRAEKT 100
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDS 95
AR I + E VP F+ K E++ + +
Sbjct: 101 ARNISKNTAIIIPEHFVPSFKPAKVFVEKVKNGNK 135
>gi|221632837|ref|YP_002522059.1| DNA-binding protein HU 1 [Thermomicrobium roseum DSM 5159]
gi|221156064|gb|ACM05191.1| DNA-binding protein HU 1 [Thermomicrobium roseum DSM 5159]
Length = 92
Score = 75.2 bits (184), Expect = 3e-12, Method: Composition-based stats.
Identities = 32/90 (35%), Positives = 45/90 (50%), Gaps = 1/90 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI +A++ V IVN + + + + LA G V I GFG+F V +RA R
Sbjct: 1 MRKSDLIKVVAERT-NARQSQVAPIVNAVFQTIQETLAKGEEVSIAGFGTFRVSERARRR 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P + I + + P FR G LK +
Sbjct: 60 GRNPRTNEPIEIPARRSPSFRPGTQLKRAV 89
>gi|294673496|ref|YP_003574112.1| HU family DNA-binding protein [Prevotella ruminicola 23]
gi|294473143|gb|ADE82532.1| DNA-binding protein, HU family [Prevotella ruminicola 23]
Length = 95
Score = 75.2 bits (184), Expect = 3e-12, Method: Composition-based stats.
Identities = 23/92 (25%), Positives = 44/92 (47%), Gaps = 1/92 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M I +A++ + + ++ VN ++E M + V I FG+F V+K+ R+
Sbjct: 1 MNNKDFITELAQRT-GYSADETQQFVNCVVEAMGDHFQDDDSVLIPTFGTFEVKKKMERI 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
P + + V K+V F+ + KER+ +
Sbjct: 60 MVNPSTGQRMLVPPKLVLTFKPNVSWKERVKN 91
>gi|189218096|ref|YP_001938738.1| nucleoid DNA-binding protein [Methylacidiphilum infernorum V4]
gi|189184954|gb|ACD82139.1| Bacterial nucleoid DNA-binding protein [Methylacidiphilum
infernorum V4]
Length = 109
Score = 75.2 bits (184), Expect = 3e-12, Method: Composition-based stats.
Identities = 29/98 (29%), Positives = 46/98 (46%), Gaps = 2/98 (2%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M + L+ ++ K L Q+V KI +L+ + +E+R FG F V R AR+
Sbjct: 1 MTRRDLVVKVSTKT-GLPQQEVAKIFEEILDVFMEVFKKKETIELRNFGVFEVTLRKARI 59
Query: 61 ARAPLAQKV-ISVEEKMVPFFRAGKNLKERLNSPDSTL 97
R P + I + + V F+ GK +K LN+ L
Sbjct: 60 GRNPRNPEKDILIPPRAVIRFKPGKEVKGILNAITKDL 97
>gi|85860306|ref|YP_462508.1| DNA-binding protein HU [Syntrophus aciditrophicus SB]
gi|85723397|gb|ABC78340.1| DNA-binding protein HU [Syntrophus aciditrophicus SB]
Length = 91
Score = 75.2 bits (184), Expect = 3e-12, Method: Composition-based stats.
Identities = 36/90 (40%), Positives = 50/90 (55%), Gaps = 2/90 (2%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K L+ + K K + ++ V +L+ MT+AL G V + GFG+F V KR+AR
Sbjct: 1 MNKGDLVEAVTKVVGK--KKLAQETVGCVLDTMTEALKKGESVTLIGFGTFKVMKRSART 58
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P K I ++ K VP F AGK LKE +
Sbjct: 59 GRNPQTGKPIKIKAKKVPKFTAGKKLKEAV 88
>gi|149201305|ref|ZP_01878280.1| DNA-binding protein HU [Roseovarius sp. TM1035]
gi|149145638|gb|EDM33664.1| DNA-binding protein HU [Roseovarius sp. TM1035]
Length = 91
Score = 75.2 bits (184), Expect = 3e-12, Method: Composition-based stats.
Identities = 21/91 (23%), Positives = 41/91 (45%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ L+ +A + + ++ ++ +T+ ++ GG V + G G R+R R+
Sbjct: 1 MTKTQLVAALADDM-GSDKKTAGAALDAVIAIITREVSAGGAVTLPGIGKIYCRERPERM 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + + E V K LK+ +N
Sbjct: 60 VRNPATGEQMKKEADKVVKMTIAKALKDSVN 90
>gi|71894500|ref|YP_278608.1| nucleoid DNA-binding protein [Mycoplasma synoviae 53]
gi|71851288|gb|AAZ43897.1| bacterial nucleoid DNA-binding protein [Mycoplasma synoviae 53]
Length = 91
Score = 75.2 bits (184), Expect = 3e-12, Method: Composition-based stats.
Identities = 21/92 (22%), Positives = 40/92 (43%), Gaps = 1/92 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ I ++ K L ++ ++ + + + + L G +V++ G F V RA R
Sbjct: 1 MTKTEFIKAVSDKT-GLTVGELNRVFDGFVYVLQEQLVAGEKVQLSNLGIFDVATRAERT 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
+ K V K V ++ K L + +N
Sbjct: 60 IKNHFTGKEQVVAAKKVVKYKPSKYLTDVVNE 91
>gi|203284151|ref|YP_002221891.1| HbbU protein [Borrelia duttonii Ly]
gi|203287689|ref|YP_002222704.1| HbbU protein [Borrelia recurrentis A1]
gi|201083594|gb|ACH93185.1| HbbU protein [Borrelia duttonii Ly]
gi|201084909|gb|ACH94483.1| HbbU protein [Borrelia recurrentis A1]
Length = 108
Score = 75.2 bits (184), Expect = 3e-12, Method: Composition-based stats.
Identities = 32/94 (34%), Positives = 51/94 (54%), Gaps = 5/94 (5%)
Query: 2 IKSSLIGTI----AKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRA 57
KS ++ I N KL + + +V+ EE+ +L +E R FG+F +RKR
Sbjct: 10 TKSDIVDQIFLNIKNNNEKLEKKYIRLVVDAFFEELKNSLCVNNVIEFRSFGTFELRKRK 69
Query: 58 AR-LARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R AR P + ++V++ V +FR GK+LKER+
Sbjct: 70 GRQNARNPQTGEYVNVDDHHVAYFRPGKDLKERV 103
>gi|46578812|ref|YP_009620.1| DNA-binding protein HU [Desulfovibrio vulgaris str.
Hildenborough]
gi|120603581|ref|YP_967981.1| histone family protein DNA-binding protein [Desulfovibrio
vulgaris DP4]
gi|46448224|gb|AAS94879.1| DNA-binding protein HU [Desulfovibrio vulgaris str.
Hildenborough]
gi|120563810|gb|ABM29554.1| histone family protein DNA-binding protein [Desulfovibrio
vulgaris DP4]
gi|311232675|gb|ADP85529.1| histone family protein DNA-binding protein [Desulfovibrio
vulgaris RCH1]
Length = 95
Score = 75.2 bits (184), Expect = 3e-12, Method: Composition-based stats.
Identities = 26/91 (28%), Positives = 42/91 (46%), Gaps = 1/91 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ ++ I +K N +V+ +V LL M QA+ + I GFG F + AR
Sbjct: 6 TKAEIVDAIYEKT-DRNRAEVKGVVESLLGIMKQAIKKDHALLISGFGKFEAYDKKARKG 64
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P + I++ + V FR + + LN
Sbjct: 65 RNPQTDETITLPPRKVVVFRLSRKFRAELNE 95
>gi|77464964|ref|YP_354468.1| DNA-binding protein HU, form N [Rhodobacter sphaeroides 2.4.1]
gi|126460833|ref|YP_001041947.1| histone family protein DNA-binding protein [Rhodobacter
sphaeroides ATCC 17029]
gi|221640885|ref|YP_002527147.1| Histone family protein DNA-binding protein [Rhodobacter
sphaeroides KD131]
gi|332559863|ref|ZP_08414185.1| DNA-binding protein HU-beta [Rhodobacter sphaeroides WS8N]
gi|77389382|gb|ABA80567.1| DNA-binding protein HU, form N [Rhodobacter sphaeroides 2.4.1]
gi|126102497|gb|ABN75175.1| histone family protein DNA-binding protein [Rhodobacter
sphaeroides ATCC 17029]
gi|221161666|gb|ACM02646.1| Histone family protein DNA-binding protein [Rhodobacter
sphaeroides KD131]
gi|332277575|gb|EGJ22890.1| DNA-binding protein HU-beta [Rhodobacter sphaeroides WS8N]
Length = 95
Score = 75.2 bits (184), Expect = 3e-12, Method: Composition-based stats.
Identities = 21/92 (22%), Positives = 41/92 (44%), Gaps = 1/92 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ L+ T+A + + + ++ + + + +A GG V + G G R+R R
Sbjct: 5 MTKTQLVATLADEM-GSDKKTANAALDAIASIVAREVAAGGAVTLPGLGKVVCRERPERQ 63
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P + ++ F K LK+ +N+
Sbjct: 64 VRNPATGEQVTKAADKQVKFTIAKALKDSVNA 95
>gi|49474169|ref|YP_032211.1| integration host factor subunit alpha [Bartonella quintana str.
Toulouse]
gi|81647096|sp|Q6FZZ9|IHFA_BARQU RecName: Full=Integration host factor subunit alpha;
Short=IHF-alpha
gi|49239673|emb|CAF26044.1| Integration host factor alpha-subunit [Bartonella quintana str.
Toulouse]
Length = 104
Score = 75.2 bits (184), Expect = 3e-12, Method: Composition-based stats.
Identities = 22/89 (24%), Positives = 44/89 (49%), Gaps = 1/89 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
++ L + +K L++ + +V ++L E+ +L G V++ F +F VR + R+
Sbjct: 7 TRADLASVVCRK-VGLSHTESAALVELVLNEICNSLVRGEAVKLSSFATFQVRNKNERIG 65
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P + + V F+A LK+R+
Sbjct: 66 RNPKTGVEAPISPRRVVTFKAANVLKQRI 94
>gi|28493083|ref|NP_787244.1| DNA-binding protein HU [Tropheryma whipplei str. Twist]
gi|28572291|ref|NP_789071.1| DNA-binding protein HU-alpha [Tropheryma whipplei TW08/27]
gi|28410422|emb|CAD66808.1| DNA-binding protein HU-alpha [Tropheryma whipplei TW08/27]
gi|28476123|gb|AAO44213.1| DNA-binding protein HU [Tropheryma whipplei str. Twist]
Length = 93
Score = 75.2 bits (184), Expect = 3e-12, Method: Composition-based stats.
Identities = 19/90 (21%), Positives = 36/90 (40%), Gaps = 1/90 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
++ L+ +A+ ++ V ++ + + GG+V I G+ S + RAAR
Sbjct: 5 NRTELVAKVAE-TSGVSRATVNSVIEETFAVFAETVRAGGKVTIPGWCSVTRSHRAARTG 63
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P K + + G LK +
Sbjct: 64 RNPQTGKTVEIPAGYSVRIAPGSKLKAAVK 93
>gi|116672458|ref|YP_833391.1| histone family protein DNA-binding protein [Arthrobacter sp.
FB24]
gi|116612567|gb|ABK05291.1| histone family protein DNA-binding protein [Arthrobacter sp.
FB24]
Length = 94
Score = 75.2 bits (184), Expect = 3e-12, Method: Composition-based stats.
Identities = 22/92 (23%), Positives = 39/92 (42%), Gaps = 1/92 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
+S L+ +A K + V +++ L E ++A G ++ I G+ + RAAR
Sbjct: 4 NRSELVAEVAGK-AGTSQAAVNSVLDALFEVFETSVAAGEKITIPGWLAVERTDRAARTG 62
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLNSP 93
R P + I + AG LK ++
Sbjct: 63 RNPQTGETIQIAAGHSVKLTAGSKLKAAVSKK 94
>gi|49475535|ref|YP_033576.1| integration host factor subunit alpha [Bartonella henselae str.
Houston-1]
gi|81647942|sp|Q6G3K3|IHFA_BARHE RecName: Full=Integration host factor subunit alpha;
Short=IHF-alpha
gi|49238341|emb|CAF27565.1| Integration host factor alpha-subunit [Bartonella henselae str.
Houston-1]
Length = 108
Score = 75.2 bits (184), Expect = 3e-12, Method: Composition-based stats.
Identities = 23/89 (25%), Positives = 45/89 (50%), Gaps = 1/89 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
++ L + +K L++ + +V ++L E+ +L G V++ F +F VRK+ R+
Sbjct: 7 TRADLASVVCRK-VGLSHTESAALVELVLNEICNSLVRGEAVKLSSFATFQVRKKNERVG 65
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P + + V F+A LK+R+
Sbjct: 66 RNPKTGVEAPILPRRVVTFKAANVLKQRI 94
>gi|149072008|ref|YP_001293578.1| DNA binding protein hu-like protein [Rhodomonas salina]
gi|134302959|gb|ABO70763.1| DNA binding protein hu-like protein [Rhodomonas salina]
Length = 92
Score = 75.2 bits (184), Expect = 3e-12, Method: Composition-based stats.
Identities = 30/92 (32%), Positives = 52/92 (56%), Gaps = 1/92 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K L+ +AKK L ++ E+I+ +LE + + ++ G +V + GFGSF R+R AR
Sbjct: 1 MNKKDLVEIVAKKR-NLTKKESEEIITTILETIIKTVSEGEKVTLVGFGSFEARERQARE 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P + + + VP F GK K+++++
Sbjct: 60 GRNPKTGERLQIPASRVPTFSVGKFFKDKVSN 91
>gi|124516626|gb|EAY58134.1| putative histone-like DNA-binding protein [Leptospirillum
rubarum]
Length = 91
Score = 75.2 bits (184), Expect = 3e-12, Method: Composition-based stats.
Identities = 33/92 (35%), Positives = 45/92 (48%), Gaps = 2/92 (2%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALAN-GGRVEIRGFGSFSVRKRAAR 59
M K+ L+ IA + K+ +N LE + +AL G +V + GFG+FS KR AR
Sbjct: 1 MKKAELVDKIA-SSAKITKSQANDALNAALETIKKALKKDGEKVTLVGFGTFSTVKRKAR 59
Query: 60 LARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P K I + VP F AGK K +
Sbjct: 60 TGRNPRTGKEIKIPAMRVPKFSAGKAFKGAIK 91
>gi|302344202|ref|YP_003808731.1| histone family protein DNA-binding protein [Desulfarculus baarsii
DSM 2075]
gi|301640815|gb|ADK86137.1| histone family protein DNA-binding protein [Desulfarculus baarsii
DSM 2075]
Length = 95
Score = 75.2 bits (184), Expect = 3e-12, Method: Composition-based stats.
Identities = 22/91 (24%), Positives = 43/91 (47%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ +I IA K ++ + + + +E + GG + + G G+FS+++ A R
Sbjct: 6 MTKAEMIDKIASK-ADISKRAAKDALEAFVEICRDEVMAGGTIRVAGLGTFSLKESAPRQ 64
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
P +K I + K F+ +++ LN
Sbjct: 65 GVNPATRKPIEITAKKRMAFKMSAQVRDMLN 95
>gi|104783417|ref|YP_609915.1| DNA-binding protein HU form N [Pseudomonas entomophila L48]
gi|95112404|emb|CAK17131.1| DNA-binding protein HU form N [Pseudomonas entomophila L48]
Length = 93
Score = 75.2 bits (184), Expect = 3e-12, Method: Composition-based stats.
Identities = 24/91 (26%), Positives = 35/91 (38%), Gaps = 1/91 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K LI IA+ + + L + + L NG + + G G V +R AR
Sbjct: 4 TKDQLIADIAE-SIDAPKTTARAALEQLGQIVADQLENGAEITLPGIGKLKVSERPARTG 62
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P I + K V F K L + +N
Sbjct: 63 RNPSTGAAIEIAAKKVVKFVPAKVLTDSINK 93
>gi|149277324|ref|ZP_01883466.1| DNA-binding protein HU [Pedobacter sp. BAL39]
gi|149232201|gb|EDM37578.1| DNA-binding protein HU [Pedobacter sp. BAL39]
Length = 100
Score = 75.2 bits (184), Expect = 3e-12, Method: Composition-based stats.
Identities = 29/98 (29%), Positives = 49/98 (50%), Gaps = 1/98 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ +I I+ K + DV++ V + + ++ G V +RGFGSF V+KRA +
Sbjct: 1 MTKADIISEISTKT-GIEKVDVQETVEAFFKVIKNSMIGGENVYVRGFGSFVVKKRAQKT 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDSTLS 98
AR I + E VP F+ K +++ + +S
Sbjct: 60 ARNISKNTAIIIPEHFVPSFKPAKVFVDKVKNNSKKVS 97
>gi|15607110|ref|NP_214492.1| integration host factor beta subunit [Aquifex aeolicus VF5]
gi|2984363|gb|AAC07882.1| integration host factor beta subunit [Aquifex aeolicus VF5]
Length = 100
Score = 75.2 bits (184), Expect = 3e-12, Method: Composition-based stats.
Identities = 29/95 (30%), Positives = 55/95 (57%), Gaps = 1/95 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS + +A+++ ++Y+ IVNM E + + NG +VE+RG G+F ++++ R
Sbjct: 1 MTKSDIAKELARRH-GISYKKALLIVNMTFEILKAKILNGEKVEVRGLGTFKLKRKPGRF 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDS 95
+ P I V+E+ VP+++ K L+++LN
Sbjct: 60 VKNPKTGIEIYVKERYVPYYKMSKLLRKKLNGDKE 94
>gi|313238132|emb|CBY13230.1| unnamed protein product [Oikopleura dioica]
Length = 91
Score = 74.8 bits (183), Expect = 3e-12, Method: Composition-based stats.
Identities = 26/91 (28%), Positives = 43/91 (47%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTI-AKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAAR 59
M K+ LI I A + ++ + +L + + + +V+I GFG+F V+KRAAR
Sbjct: 1 MNKAELIDAIQAALGKDATKRAADEALEAVLSSIAKGVKKDKKVQIIGFGTFEVKKRAAR 60
Query: 60 LARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P + + + F+A LK L
Sbjct: 61 TGRNPKTGEAMKIAASKSVGFKASSVLKTSL 91
>gi|301167343|emb|CBW26925.1| DNA-binding protein HU-beta [Bacteriovorax marinus SJ]
Length = 92
Score = 74.8 bits (183), Expect = 3e-12, Method: Composition-based stats.
Identities = 29/90 (32%), Positives = 47/90 (52%), Gaps = 2/90 (2%)
Query: 1 MIKSSLIGTI--AKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAA 58
M K L+ TI K+ + +D E +N ++ + + + G V + GFGSFS +RAA
Sbjct: 1 MNKKELLETILKNKELNHMTKKDAELFLNTTIDTIKKTVKKGEDVSLIGFGSFSKVRRAA 60
Query: 59 RLARAPLAQKVISVEEKMVPFFRAGKNLKE 88
R P + I ++ K +P F+ GK K+
Sbjct: 61 RAGVNPATGEKIKIKAKNLPKFKPGKAWKD 90
>gi|332881402|ref|ZP_08449052.1| DNA-binding protein HU-beta [Capnocytophaga sp. oral taxon 329
str. F0087]
gi|332680778|gb|EGJ53725.1| DNA-binding protein HU-beta [Capnocytophaga sp. oral taxon 329
str. F0087]
Length = 107
Score = 74.8 bits (183), Expect = 3e-12, Method: Composition-based stats.
Identities = 25/71 (35%), Positives = 42/71 (59%), Gaps = 1/71 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI IA+ N LN D +K ++ + +++AL G ++ + GFG+FSV +R AR
Sbjct: 18 MNKTELINAIAE-NAGLNKADAKKALDATISAISEALKKGDKIALVGFGTFSVNERPART 76
Query: 61 ARAPLAQKVIS 71
P ++ I+
Sbjct: 77 GINPRTKEQIT 87
>gi|325125586|gb|ADY84916.1| DNA-binding protein HU [Lactobacillus delbrueckii subsp.
bulgaricus 2038]
Length = 80
Score = 74.8 bits (183), Expect = 3e-12, Method: Composition-based stats.
Identities = 24/75 (32%), Positives = 38/75 (50%), Gaps = 1/75 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ L+ +A K KL +DV + V+ + E + + LA G +V++ GFG+F VR AR
Sbjct: 3 NKAELVSEVAAKT-KLTKKDVSEAVDAVFEAIQEDLAKGEKVQLIGFGTFEVRHLGARKG 61
Query: 62 RAPLAQKVISVEEKM 76
R P +
Sbjct: 62 RNPQTGAENEIPASK 76
>gi|91217978|ref|ZP_01254930.1| DNA-binding protein HU [Psychroflexus torquis ATCC 700755]
gi|91183836|gb|EAS70227.1| DNA-binding protein HU [Psychroflexus torquis ATCC 700755]
Length = 96
Score = 74.8 bits (183), Expect = 3e-12, Method: Composition-based stats.
Identities = 26/93 (27%), Positives = 43/93 (46%), Gaps = 1/93 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ ++ I+ K L +V+ V ++E+ +L G V +RGFGSF V+ RA +
Sbjct: 1 MTKADIVANISDKL-GLEKGEVQATVETFMDEVKNSLEGGDNVYLRGFGSFIVKTRAEKT 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSP 93
R I + +P F+ K E +
Sbjct: 60 GRNISKNTTIKIPAHNIPAFKPAKIFVEGVKQN 92
>gi|228473931|ref|ZP_04058672.1| DNA-binding protein HU [Capnocytophaga gingivalis ATCC 33624]
gi|228274445|gb|EEK13286.1| DNA-binding protein HU [Capnocytophaga gingivalis ATCC 33624]
Length = 106
Score = 74.8 bits (183), Expect = 3e-12, Method: Composition-based stats.
Identities = 24/93 (25%), Positives = 46/93 (49%), Gaps = 1/93 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ ++ I++K + +V+ +V +E + +L G V +RGFGSF V+ RA +
Sbjct: 1 MTKAEIVAKISEKL-GIEKTEVQNVVEHFMEGIKDSLEKGDNVYLRGFGSFIVKTRAEKT 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSP 93
R I++ +P F+ K + + +
Sbjct: 60 GRNISKNTTITIPAHNIPAFKPAKVFVQSVKTK 92
>gi|15599135|ref|NP_252629.1| DNA binding protein [Pseudomonas aeruginosa PAO1]
gi|107103457|ref|ZP_01367375.1| hypothetical protein PaerPA_01004527 [Pseudomonas aeruginosa
PACS2]
gi|116051980|ref|YP_789177.1| putative DNA binding protein [Pseudomonas aeruginosa UCBPP-PA14]
gi|218889778|ref|YP_002438642.1| putative DNA binding protein [Pseudomonas aeruginosa LESB58]
gi|254236833|ref|ZP_04930156.1| hypothetical protein PACG_02853 [Pseudomonas aeruginosa C3719]
gi|254242628|ref|ZP_04935950.1| hypothetical protein PA2G_03387 [Pseudomonas aeruginosa 2192]
gi|296387535|ref|ZP_06877010.1| putative DNA binding protein [Pseudomonas aeruginosa PAb1]
gi|313109375|ref|ZP_07795338.1| putative DNA binding protein [Pseudomonas aeruginosa 39016]
gi|9950127|gb|AAG07327.1|AE004812_2 probable DNA binding protein [Pseudomonas aeruginosa PAO1]
gi|14028721|gb|AAK52477.1|AF345630_1 histone-like protein HU form N [Pseudomonas aeruginosa PAO1]
gi|115587201|gb|ABJ13216.1| histone-like protein HU form N [Pseudomonas aeruginosa
UCBPP-PA14]
gi|126168764|gb|EAZ54275.1| hypothetical protein PACG_02853 [Pseudomonas aeruginosa C3719]
gi|126196006|gb|EAZ60069.1| hypothetical protein PA2G_03387 [Pseudomonas aeruginosa 2192]
gi|218770001|emb|CAW25763.1| probable DNA binding protein [Pseudomonas aeruginosa LESB58]
gi|310881840|gb|EFQ40434.1| putative DNA binding protein [Pseudomonas aeruginosa 39016]
Length = 93
Score = 74.8 bits (183), Expect = 3e-12, Method: Composition-based stats.
Identities = 28/90 (31%), Positives = 38/90 (42%), Gaps = 1/90 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K LI IA+ V ++ L E + AL N G + + G G V +R AR
Sbjct: 4 TKDQLIQDIAEAI-DAQKTTVRSALDQLAEIVKDALENDGEITLPGIGKLKVSERPARTG 62
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P K I + K V F K L + +N
Sbjct: 63 RNPQTGKAIEIAAKRVAKFVPAKALTDAIN 92
>gi|85716441|ref|ZP_01047413.1| Histone-like DNA-binding protein [Nitrobacter sp. Nb-311A]
gi|85696798|gb|EAQ34684.1| Histone-like DNA-binding protein [Nitrobacter sp. Nb-311A]
Length = 112
Score = 74.8 bits (183), Expect = 3e-12, Method: Composition-based stats.
Identities = 29/85 (34%), Positives = 45/85 (52%), Gaps = 1/85 (1%)
Query: 6 LIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLARAPL 65
L +A+ + +L+ + E I+ ++ +T+ L G R+ I G G VRKRAAR R P
Sbjct: 29 LAAALAEDH-ELSKKAAEAILTDMVTRITKHLKKGDRIRIVGLGILQVRKRAARKGRNPA 87
Query: 66 AQKVISVEEKMVPFFRAGKNLKERL 90
+ I ++ FRA K LKE +
Sbjct: 88 TGEEIQIKASKKVAFRAAKELKEAI 112
>gi|124514774|gb|EAY56286.1| putative integration host factor, alpha subunit HimA like
[Leptospirillum rubarum]
gi|206602432|gb|EDZ38913.1| putative integration host factor, alpha subunit HimA-like
[Leptospirillum sp. Group II '5-way CG']
Length = 98
Score = 74.8 bits (183), Expect = 3e-12, Method: Composition-based stats.
Identities = 26/98 (26%), Positives = 46/98 (46%), Gaps = 2/98 (2%)
Query: 1 MIKSSLIGTIAKK--NPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAA 58
M + ++ I +K + + V +I + +LEE++ L NG V+I GFG+F VRK
Sbjct: 1 MKRLDIVQRILEKPEYSRYTAKFVGQIFDGILEEISATLENGEDVKITGFGTFIVRKIND 60
Query: 59 RLARAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDST 96
R R P + + + F ++L + P+
Sbjct: 61 RPGRNPKTGEPVLIPAHHTVLFHPSRSLLKASGKPEKK 98
>gi|303326346|ref|ZP_07356789.1| DNA-binding protein HU [Desulfovibrio sp. 3_1_syn3]
gi|302864262|gb|EFL87193.1| DNA-binding protein HU [Desulfovibrio sp. 3_1_syn3]
Length = 122
Score = 74.8 bits (183), Expect = 3e-12, Method: Composition-based stats.
Identities = 27/90 (30%), Positives = 44/90 (48%), Gaps = 1/90 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ ++ I ++ K N DV+ +V LLE M A+ + I GFG F +A+R
Sbjct: 33 TKADIVEAIYEETDK-NRVDVKNVVEQLLEIMKTAIKKDRALLISGFGKFECYDKASRKG 91
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + I++ + V FR + + LN
Sbjct: 92 RNPQTDETITLPPRKVMVFRLSRKFRSELN 121
>gi|224824984|ref|ZP_03698090.1| histone family protein DNA-binding protein [Lutiella nitroferrum
2002]
gi|224602655|gb|EEG08832.1| histone family protein DNA-binding protein [Lutiella nitroferrum
2002]
Length = 62
Score = 74.8 bits (183), Expect = 3e-12, Method: Composition-based stats.
Identities = 25/62 (40%), Positives = 34/62 (54%)
Query: 29 LLEEMTQALANGGRVEIRGFGSFSVRKRAARLARAPLAQKVISVEEKMVPFFRAGKNLKE 88
++ +T AL G V + GFG+F V +RA R R P I++ P FRAGK LK+
Sbjct: 1 MIAAVTGALKQGDTVTLVGFGTFYVGERAERTGRNPKTGDSITIPAARSPKFRAGKALKD 60
Query: 89 RL 90
L
Sbjct: 61 AL 62
>gi|255589015|ref|XP_002534800.1| DNA-binding protein HU-alpha, putative [Ricinus communis]
gi|223524551|gb|EEF27583.1| DNA-binding protein HU-alpha, putative [Ricinus communis]
Length = 348
Score = 74.8 bits (183), Expect = 3e-12, Method: Composition-based stats.
Identities = 22/82 (26%), Positives = 36/82 (43%), Gaps = 3/82 (3%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVE---KIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRA 57
M K LI +A + E + ++ +LE +T A+ G V++ FGSFS R+
Sbjct: 1 MNKQELIDAVAASTGESKASTGEGEGEALDAILEAVTSAVTRGEAVQLIAFGSFSTGARS 60
Query: 58 ARLARAPLAQKVISVEEKMVPF 79
R R P + I++
Sbjct: 61 ERTGRNPSTGETITIPAAKTAK 82
>gi|146278828|ref|YP_001168987.1| histone family protein DNA-binding protein [Rhodobacter
sphaeroides ATCC 17025]
gi|145557069|gb|ABP71682.1| histone family protein DNA-binding protein [Rhodobacter
sphaeroides ATCC 17025]
Length = 95
Score = 74.8 bits (183), Expect = 3e-12, Method: Composition-based stats.
Identities = 21/92 (22%), Positives = 41/92 (44%), Gaps = 1/92 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ L+ T+A + + + ++ + + + +A GG V + G G R+R R
Sbjct: 5 MTKTQLVATLADEM-GADKKTANAALDAIASIVAREVAAGGAVTLPGLGKVVCRERPERQ 63
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P + ++ F K LK+ +N+
Sbjct: 64 VRNPATGEQVTKAADKQVKFTIAKALKDSVNA 95
>gi|315419719|gb|ADU15829.1| histone-like protein [Streptococcus gordonii]
Length = 91
Score = 74.8 bits (183), Expect = 4e-12, Method: Composition-based stats.
Identities = 33/90 (36%), Positives = 50/90 (55%), Gaps = 1/90 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K LI +A +L +D V+ + +T+ L+ G +V++ GFG+F VR+RAAR
Sbjct: 3 NKQDLIAKVAAAT-ELTKKDSAAAVDAVFAAVTEYLSKGEKVQLIGFGNFEVRERAARKG 61
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P K I + VP F+AGK LK+ +
Sbjct: 62 RNPQTGKEIKIAASKVPAFKAGKALKDVIK 91
>gi|78045437|ref|YP_361687.1| histone-like family DNA-binding protein [Xanthomonas campestris
pv. vesicatoria str. 85-10]
gi|78033941|emb|CAJ19940.1| histone-like family DNA-binding protein [Xanthomonas campestris
pv. vesicatoria str. 85-10]
Length = 99
Score = 74.8 bits (183), Expect = 4e-12, Method: Composition-based stats.
Identities = 30/97 (30%), Positives = 47/97 (48%), Gaps = 2/97 (2%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS+L IA ++ + + IV+ + E + L GRV I FG F ++ + R
Sbjct: 1 MNKSALASAIAHRHA-MTQAEASSIVDTVTEVVALMLLEHGRVNINRFGRFRLQHKPPRQ 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKER-LNSPDST 96
AR P + + V E++ F A LK R L+S +
Sbjct: 60 ARNPKTGETVQVGERVAVQFTAADELKRRFLDSKNGN 96
>gi|88854439|ref|ZP_01129106.1| DNA-binding HU protein [marine actinobacterium PHSC20C1]
gi|88816247|gb|EAR26102.1| DNA-binding HU protein [marine actinobacterium PHSC20C1]
Length = 96
Score = 74.8 bits (183), Expect = 4e-12, Method: Composition-based stats.
Identities = 18/88 (20%), Positives = 39/88 (44%), Gaps = 1/88 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
++ + +A ++ + + V +V+ +++++ NG +V I G+ + R AR
Sbjct: 7 NRTEFVAAVAAQSGQ-SQAAVSGVVDAFFAVLSESVGNGVKVSIPGWMAAEQTFREARTG 65
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKER 89
R P + I ++ AG LK
Sbjct: 66 RNPQTGEAIQIKASNGVKLSAGSKLKAA 93
>gi|228469635|ref|ZP_04054615.1| DNA-binding protein HU [Porphyromonas uenonis 60-3]
gi|228308828|gb|EEK17529.1| DNA-binding protein HU [Porphyromonas uenonis 60-3]
Length = 90
Score = 74.8 bits (183), Expect = 4e-12, Method: Composition-based stats.
Identities = 28/91 (30%), Positives = 49/91 (53%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ ++ +IA ++ Q+V ++V ++ + A++ G V +RGFGSF V++RA +
Sbjct: 1 MTKAEVVKSIAD-TTGVDRQEVLQVVEAFMDTVKNAMSQGDNVYLRGFGSFVVKERAEKT 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
AR Q I V + VP F+ K +
Sbjct: 60 ARNISKQTTIIVPARKVPTFKPSKAFTAMIK 90
>gi|114798281|ref|YP_759882.1| putative integration host factor subunit alpha [Hyphomonas
neptunium ATCC 15444]
gi|114738455|gb|ABI76580.1| putative integration host factor, alpha subunit [Hyphomonas
neptunium ATCC 15444]
Length = 98
Score = 74.8 bits (183), Expect = 4e-12, Method: Composition-based stats.
Identities = 21/89 (23%), Positives = 42/89 (47%), Gaps = 1/89 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
++ + I ++ + Q+ +++ L+ + AL V++ FG+F VR +AAR
Sbjct: 7 TRAEVTDAIVRE-VGVTRQESADLLDRTLDLIGAALEQEQEVKLARFGNFVVRSKAAREG 65
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P + + + V FR LK ++
Sbjct: 66 RNPKTGEEAPIAARRVVTFRPSPMLKSQV 94
>gi|295136313|ref|YP_003586989.1| histone-like DNA-binding protein [Zunongwangia profunda SM-A87]
gi|294984328|gb|ADF54793.1| histone-like DNA-binding protein [Zunongwangia profunda SM-A87]
Length = 96
Score = 74.8 bits (183), Expect = 4e-12, Method: Composition-based stats.
Identities = 27/93 (29%), Positives = 46/93 (49%), Gaps = 1/93 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ ++ I++K + DV+ + +EE+ +L +G V +RGFGSF V+ RA +
Sbjct: 1 MTKADIVANISEKL-GMEKGDVQATIETFMEEVKSSLESGDNVYLRGFGSFVVKTRAEKT 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSP 93
R I + +P F+ K E + S
Sbjct: 60 GRNISKNTTIKIPAHNIPAFKPAKIFVEGVKSN 92
>gi|87248001|gb|ABD36054.1| Hbb [Borrelia lusitaniae]
gi|87248003|gb|ABD36055.1| Hbb [Borrelia lusitaniae]
Length = 108
Score = 74.8 bits (183), Expect = 4e-12, Method: Composition-based stats.
Identities = 32/94 (34%), Positives = 50/94 (53%), Gaps = 5/94 (5%)
Query: 2 IKSSLIGTIA----KKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRA 57
KS ++ I+ N KL + + +++ EE+ L + +E R FG+F VRKR
Sbjct: 10 TKSDVVNQISLNIRNNNLKLEKKYIRLVIDAFFEELKSNLCSNNVIEFRSFGTFEVRKRK 69
Query: 58 AR-LARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R AR P + + V + V +FR GK+LKER+
Sbjct: 70 GRLNARNPQTGEYVKVLDHHVAYFRPGKDLKERV 103
>gi|319952649|ref|YP_004163916.1| histone family protein DNA-binding protein [Cellulophaga algicola
DSM 14237]
gi|319421309|gb|ADV48418.1| histone family protein DNA-binding protein [Cellulophaga algicola
DSM 14237]
Length = 96
Score = 74.8 bits (183), Expect = 4e-12, Method: Composition-based stats.
Identities = 28/93 (30%), Positives = 46/93 (49%), Gaps = 1/93 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ ++ I++K + DV+ V +EE+ +L NG V +RGFGSF ++ RA +
Sbjct: 1 MTKADIVTRISEKL-GIEKGDVQATVESFMEEVKYSLENGDNVYLRGFGSFIIKTRAEKT 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSP 93
R I + +P F+ K E + S
Sbjct: 60 GRNISKNTTIKIPAHNIPSFKPAKVFVESVKSN 92
>gi|239904866|ref|YP_002951604.1| HU_IHF family transcriptional regulator [Desulfovibrio magneticus
RS-1]
gi|239794729|dbj|BAH73718.1| HU_IHF family transcriptional regulator [Desulfovibrio magneticus
RS-1]
Length = 100
Score = 74.8 bits (183), Expect = 4e-12, Method: Composition-based stats.
Identities = 25/93 (26%), Positives = 44/93 (47%), Gaps = 1/93 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ ++ I +K + N +V+ +V+ LLE M Q++ + + GFG F + AR
Sbjct: 7 TKADIVDYIYEKTER-NRAEVKVLVDHLLELMKQSIKRDNSLLVSGFGKFESYDKKARKG 65
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLNSPD 94
R P I + + V FR + + LN +
Sbjct: 66 RNPQTNASIMLPPRKVVVFRLSRKFRAELNPDE 98
>gi|332520146|ref|ZP_08396610.1| histone family protein DNA-binding protein [Lacinutrix algicola
5H-3-7-4]
gi|332044705|gb|EGI80899.1| histone family protein DNA-binding protein [Lacinutrix algicola
5H-3-7-4]
Length = 96
Score = 74.8 bits (183), Expect = 4e-12, Method: Composition-based stats.
Identities = 27/93 (29%), Positives = 45/93 (48%), Gaps = 1/93 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ L+ I++K + DV+ V +EE+ +L G V +RGFGSF ++ RA +
Sbjct: 1 MTKADLVAKISEKL-GIEKGDVQATVETFMEEVKTSLEAGDNVYLRGFGSFIIKTRAEKT 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSP 93
R I + +P F+ K E + +
Sbjct: 60 GRNISKNTTIKIPAHNIPAFKPAKVFVEGVKTN 92
>gi|146299294|ref|YP_001193885.1| histone family protein DNA-binding protein [Flavobacterium
johnsoniae UW101]
gi|146153712|gb|ABQ04566.1| histone family protein DNA-binding protein [Flavobacterium
johnsoniae UW101]
Length = 96
Score = 74.8 bits (183), Expect = 4e-12, Method: Composition-based stats.
Identities = 28/95 (29%), Positives = 46/95 (48%), Gaps = 1/95 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ ++ I++K L DV+ V +EE+ +L G V +RGFGSF V+ RA +
Sbjct: 1 MTKADIVAKISEKL-GLEKGDVQATVETFMEEVKTSLETGDNVYLRGFGSFIVKTRAEKT 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDS 95
R I + +P F+ K E + + +
Sbjct: 60 GRNISKNTTIKIPAHNIPAFKPAKVFVEGVKTNNE 94
>gi|187734792|ref|YP_001876904.1| histone family protein DNA-binding protein [Akkermansia
muciniphila ATCC BAA-835]
gi|187424844|gb|ACD04123.1| histone family protein DNA-binding protein [Akkermansia
muciniphila ATCC BAA-835]
Length = 101
Score = 74.8 bits (183), Expect = 4e-12, Method: Composition-based stats.
Identities = 25/90 (27%), Positives = 46/90 (51%), Gaps = 2/90 (2%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K L+ I+ + +V IV ++ ++ LA G RV IR FG+F V++ ++
Sbjct: 6 TKRDLVNKISAET-NFTQIEVFDIVQRAVDIISSTLAEGDRVVIRNFGTFQVKEVKPKVG 64
Query: 62 RAPLA-QKVISVEEKMVPFFRAGKNLKERL 90
R P + + + + V F+ GK LK+++
Sbjct: 65 RNPKNPDQDVPIPARSVVKFKVGKELKDQV 94
>gi|218282536|ref|ZP_03488786.1| hypothetical protein EUBIFOR_01368 [Eubacterium biforme DSM 3989]
gi|218216523|gb|EEC90061.1| hypothetical protein EUBIFOR_01368 [Eubacterium biforme DSM 3989]
Length = 94
Score = 74.8 bits (183), Expect = 4e-12, Method: Composition-based stats.
Identities = 28/91 (30%), Positives = 50/91 (54%), Gaps = 1/91 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K +I IA+ + L +D+ ++V++ L ++ + L+ G V++ GFG F + +R AR
Sbjct: 5 TKKDIISNIAEDS-HLTKKDITEVVDLALTQIFEGLSEGKTVDLAGFGKFEITERKAREG 63
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
PL ++ I +E F+ K LKE +N
Sbjct: 64 INPLTKEKIQIEASKSVKFKIAKALKEAVNK 94
>gi|15827894|ref|NP_302157.1| histone-like protein [Mycobacterium leprae TN]
gi|221230371|ref|YP_002503787.1| putative histone-like protein [Mycobacterium leprae Br4923]
gi|6014920|sp|O33125|DBH_MYCLE RecName: Full=DNA-binding protein HU homolog; AltName: Full=21
kDa laminin-2-binding protein; AltName:
Full=Histone-like protein; Short=Hlp
gi|2414560|emb|CAB16449.1| histone-like DNA binding protein [Mycobacterium leprae]
gi|6009551|dbj|BAA84958.1| 21-kDa laminin-2-binding protein [Mycobacterium leprae]
gi|13093447|emb|CAC30636.1| probable histone-like protein [Mycobacterium leprae]
gi|219933478|emb|CAR71778.1| probable histone-like protein [Mycobacterium leprae Br4923]
Length = 200
Score = 74.8 bits (183), Expect = 4e-12, Method: Composition-based stats.
Identities = 29/90 (32%), Positives = 46/90 (51%), Gaps = 1/90 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI + +K + + V +++ + +A+ G V I GFG F R+RAAR+
Sbjct: 1 MNKAELIDVLTQKL-GSDRRQATAAVENVVDTIVRAVHKGDSVTITGFGVFEQRRRAARV 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
AR P + + V+ VP FR G K +
Sbjct: 60 ARNPRTGETVKVKPTSVPAFRPGAQFKAVV 89
>gi|222102284|ref|YP_002546874.1| integration host factor, alpha subunit [Agrobacterium radiobacter
K84]
gi|221728401|gb|ACM31410.1| integration host factor, alpha subunit [Agrobacterium radiobacter
K84]
Length = 114
Score = 74.8 bits (183), Expect = 4e-12, Method: Composition-based stats.
Identities = 21/95 (22%), Positives = 40/95 (42%), Gaps = 1/95 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
++ L + +K L+ + +V ++L E+ AL G + + F S V + R
Sbjct: 7 TRADLAYAVFQKI-GLSRTESSDLVEVVLGEIGDALVRGEPIGLSSFASLQVNAKTHRPG 65
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDST 96
R P + + + + V F A +K R+ T
Sbjct: 66 RNPRTGEEVLISARRVVKFTASDVMKSRIQKAHKT 100
>gi|257463308|ref|ZP_05627706.1| histone family protein DNA-binding protein [Fusobacterium sp.
D12]
gi|317060887|ref|ZP_07925372.1| DNA-binding protein HU [Fusobacterium sp. D12]
gi|313686563|gb|EFS23398.1| DNA-binding protein HU [Fusobacterium sp. D12]
Length = 93
Score = 74.8 bits (183), Expect = 4e-12, Method: Composition-based stats.
Identities = 26/94 (27%), Positives = 50/94 (53%), Gaps = 1/94 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K + +AKK ++ ++ ++++ LE + ++L G V+ GFG++ +KR AR
Sbjct: 1 MTKKEFVAALAKK-AEVTGKEADRMLKCFLELVEESLVAGNDVKFIGFGTWETKKREARK 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSPD 94
R P K + + K V F+ GK L +++ +
Sbjct: 60 LRNPQTGKEMKIAAKRVVKFKVGKALADKVAAKK 93
>gi|89145734|gb|ABD62056.1| Hbb [Borrelia genomosp. 1]
gi|89145736|gb|ABD62057.1| Hbb [Borrelia genomosp. 1]
Length = 108
Score = 74.8 bits (183), Expect = 4e-12, Method: Composition-based stats.
Identities = 30/94 (31%), Positives = 50/94 (53%), Gaps = 5/94 (5%)
Query: 2 IKSSLIGTIA----KKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRA 57
KS ++ I+ N KL + + +++ E++ L + +E R FG+F VRKR
Sbjct: 10 TKSDIVDQISLHIRNNNLKLEKKYIRLVIDAFFEKLKSNLCSNNVIEFRSFGTFEVRKRK 69
Query: 58 AR-LARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R AR P + + V + V +FR G++LKER+
Sbjct: 70 GRLNARNPQTGEYVKVLDHHVAYFRPGRDLKERV 103
>gi|1280533|gb|AAC73071.1| histone-like protein HBbu [Borrelia burgdorferi]
Length = 108
Score = 74.8 bits (183), Expect = 4e-12, Method: Composition-based stats.
Identities = 33/94 (35%), Positives = 49/94 (52%), Gaps = 5/94 (5%)
Query: 2 IKSSLIGTIA----KKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRA 57
KS ++ IA N KL + + +++ EE+ L + +E R FG+F VRKR
Sbjct: 10 TKSDIVDQIALNIKNNNLKLEKKYIRLVIDAFFEELKSNLCSNNVIEFRSFGTFEVRKRK 69
Query: 58 AR-LARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R AR P + V + V +FR GK+LKER+
Sbjct: 70 GRLNARNPQTGVYVKVLDHHVAYFRPGKDLKERV 103
>gi|296446427|ref|ZP_06888371.1| histone family protein DNA-binding protein [Methylosinus
trichosporium OB3b]
gi|296256062|gb|EFH03145.1| histone family protein DNA-binding protein [Methylosinus
trichosporium OB3b]
Length = 94
Score = 74.4 bits (182), Expect = 4e-12, Method: Composition-based stats.
Identities = 30/93 (32%), Positives = 45/93 (48%), Gaps = 1/93 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K L+ +A+ + ++ +LE +T AL G V + GFG+FSV+KRAA +
Sbjct: 3 NKLELVEHVAEAT-DTSKAAATAAIDAVLEGITMALKKGEEVRLVGFGTFSVKKRAAGVG 61
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLNSPD 94
R P + I + E F+ G LK LN
Sbjct: 62 RNPATGEEIQIPESTSARFKPGATLKAALNKTK 94
>gi|163753443|ref|ZP_02160567.1| DNA-binding protein HU [Kordia algicida OT-1]
gi|161327175|gb|EDP98500.1| DNA-binding protein HU [Kordia algicida OT-1]
Length = 96
Score = 74.4 bits (182), Expect = 4e-12, Method: Composition-based stats.
Identities = 27/93 (29%), Positives = 46/93 (49%), Gaps = 1/93 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ ++ I++K + DV+ V +EE+ +L +G V +RGFGSF ++ RA +
Sbjct: 1 MTKADIVAKISEKL-GMEKGDVQATVETFMEEVKNSLESGDNVYLRGFGSFIIKTRAEKT 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSP 93
R I + +P F+ K E + S
Sbjct: 60 GRNISKNTTIKIPAHNIPAFKPAKVFVEGVKSN 92
>gi|330996516|ref|ZP_08320398.1| DNA-binding protein HU-beta [Paraprevotella xylaniphila YIT
11841]
gi|329573072|gb|EGG54691.1| DNA-binding protein HU-beta [Paraprevotella xylaniphila YIT
11841]
Length = 107
Score = 74.4 bits (182), Expect = 4e-12, Method: Composition-based stats.
Identities = 25/71 (35%), Positives = 42/71 (59%), Gaps = 1/71 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI IA+ N LN D +K ++ + +++AL G ++ + GFG+FSV +R AR
Sbjct: 18 MNKTELINAIAE-NAGLNKTDAKKALDATISAISEALKKGDKIALVGFGTFSVSERPART 76
Query: 61 ARAPLAQKVIS 71
P ++ I+
Sbjct: 77 GINPRTKEQIT 87
>gi|297182787|gb|ADI18941.1| hypothetical protein [uncultured SAR11 cluster bacterium
HF0010_09O16]
Length = 97
Score = 74.4 bits (182), Expect = 5e-12, Method: Composition-based stats.
Identities = 25/94 (26%), Positives = 49/94 (52%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
+KS +I + K P + + KIV+ +L+E+ ++L EIR FG +S + + +
Sbjct: 4 VKSEIIKQLKKSYPNFENKILSKIVDTILKEIKESLKRNESCEIRKFGRWSTKIQKPSIR 63
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDS 95
R P + + + + K V ++ K L +LN+ +
Sbjct: 64 RNPKSGQKVHINAKKVVRWKMSKELFRKLNNDEE 97
>gi|163781827|ref|ZP_02176827.1| hypothetical protein HG1285_03053 [Hydrogenivirga sp. 128-5-R1-1]
gi|159883047|gb|EDP76551.1| hypothetical protein HG1285_03053 [Hydrogenivirga sp. 128-5-R1-1]
Length = 90
Score = 74.4 bits (182), Expect = 5e-12, Method: Composition-based stats.
Identities = 28/91 (30%), Positives = 49/91 (53%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ L+ +A K + ++ + + + + +AL G R+ I G G F+V+KRAAR
Sbjct: 1 MTKAELVAEVA-KQAGITKKEADAALKAAVAAIAKALKKGERIAIPGLGIFTVKKRAARK 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P +VI + + V F+ K+L+E +
Sbjct: 60 GRNPRTGQVIQIPARKVVAFKPAKDLRESIK 90
>gi|328541581|ref|YP_004301691.1| Histone-like DNA-binding protein [Polymorphum gilvum SL003B-26A1]
gi|326415720|gb|ADZ72782.1| Histone-like DNA-binding protein [Polymorphum gilvum SL003B-26A1]
Length = 92
Score = 74.4 bits (182), Expect = 5e-12, Method: Composition-based stats.
Identities = 22/87 (25%), Positives = 33/87 (37%), Gaps = 1/87 (1%)
Query: 5 SLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLARAP 64
+ IA + L + IV + ++ +A G I FG F V+ R R P
Sbjct: 6 EIADKIASEQ-NLTKTQAKAIVESVFNQIAEAAKAGAETSIPSFGKFKVKDTPEREGRNP 64
Query: 65 LAQKVISVEEKMVPFFRAGKNLKERLN 91
I + F GK +K+ LN
Sbjct: 65 ATGATIKIAASKKLTFTPGKAVKDALN 91
>gi|10954922|ref|NP_053342.1| hypothetical protein pTi-SAKURA_p104 [Agrobacterium tumefaciens]
gi|41223342|ref|NP_396642.2| HNS-type DNA binding protein [Agrobacterium tumefaciens str. C58]
gi|6498275|dbj|BAA87727.1| tiorf102 [Agrobacterium tumefaciens]
gi|159141770|gb|AAK91083.2| HNS-type DNA binding protein [Agrobacterium tumefaciens str. C58]
Length = 92
Score = 74.4 bits (182), Expect = 5e-12, Method: Composition-based stats.
Identities = 22/87 (25%), Positives = 34/87 (39%), Gaps = 1/87 (1%)
Query: 5 SLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLARAP 64
+ IA + L + IV + +++T A G I FG F ++ R R P
Sbjct: 6 EIADKIAAEQS-LTKAQAKTIVESVFKQITDAALAGAETSIPSFGKFKLKDTPEREGRNP 64
Query: 65 LAQKVISVEEKMVPFFRAGKNLKERLN 91
I + F GK +K+ LN
Sbjct: 65 ATGATIKIAASKKLTFTPGKAVKDALN 91
>gi|149199234|ref|ZP_01876272.1| probable DNA-binding protein HU [Lentisphaera araneosa HTCC2155]
gi|149137659|gb|EDM26074.1| probable DNA-binding protein HU [Lentisphaera araneosa HTCC2155]
Length = 100
Score = 74.4 bits (182), Expect = 5e-12, Method: Composition-based stats.
Identities = 33/91 (36%), Positives = 54/91 (59%), Gaps = 2/91 (2%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K L+ IA ++ KLN Q+V +V L+ +T LA G VE+R FG F ++ R R+
Sbjct: 1 MTKRDLVVRIADES-KLNQQEVMNVVQKTLDYITNELAAGRNVELRNFGVFELKVRKQRI 59
Query: 61 ARAPLAQK-VISVEEKMVPFFRAGKNLKERL 90
R P + + + E++V F++GK +KE++
Sbjct: 60 GRNPNKPENEVPIPERVVVKFKSGKVMKEKV 90
>gi|330837189|ref|YP_004411830.1| histone family protein DNA-binding protein [Spirochaeta coccoides
DSM 17374]
gi|329749092|gb|AEC02448.1| histone family protein DNA-binding protein [Spirochaeta coccoides
DSM 17374]
Length = 104
Score = 74.4 bits (182), Expect = 5e-12, Method: Composition-based stats.
Identities = 31/90 (34%), Positives = 49/90 (54%), Gaps = 2/90 (2%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAAR-L 60
K+++I + +K LN D+ +++ EE+ L +E+RGFG+F VR R R
Sbjct: 8 TKAAIIENLHQKL-NLNRSDIHMVLDEFFEEIKNGLQEDKIIELRGFGTFEVRTRKGREK 66
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
AR P V++V+ V FR GK LK+ +
Sbjct: 67 ARNPKTGDVVAVDTHGVAIFRPGKELKDYV 96
>gi|238063255|ref|ZP_04607964.1| histone family protein DNA-binding protein [Micromonospora sp. ATCC
39149]
gi|237885066|gb|EEP73894.1| histone family protein DNA-binding protein [Micromonospora sp. ATCC
39149]
Length = 241
Score = 74.4 bits (182), Expect = 5e-12, Method: Composition-based stats.
Identities = 30/89 (33%), Positives = 46/89 (51%), Gaps = 2/89 (2%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ LI +A + + ++ +L E+ A+ G +V I GFG+F R R AR A
Sbjct: 19 NKAELIEALAVRLGD--RRTATAALDAVLAEVQAAVTKGEKVAITGFGAFEKRVRGARTA 76
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P + + V++ VP FRAG KE +
Sbjct: 77 RNPRTGEAVKVKKTSVPTFRAGAGFKEMV 105
>gi|315637348|ref|ZP_07892566.1| DNA-binding protein HU [Arcobacter butzleri JV22]
gi|315478391|gb|EFU69106.1| DNA-binding protein HU [Arcobacter butzleri JV22]
Length = 91
Score = 74.4 bits (182), Expect = 5e-12, Method: Composition-based stats.
Identities = 32/90 (35%), Positives = 48/90 (53%), Gaps = 1/90 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ I +A K L+ +D + V+ +L+ +T+AL V GFG+F+ RAAR
Sbjct: 1 MNKAEFIDAVAAK-AGLSKKDAKGAVDAVLDTITEALVKKESVSFIGFGTFATAARAART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
A+ P K + V V F+ GK LKE +
Sbjct: 60 AKVPGTTKTVDVPATTVAKFKVGKALKEAV 89
>gi|260425403|ref|ZP_05779383.1| DNA-binding protein HU [Citreicella sp. SE45]
gi|260423343|gb|EEX16593.1| DNA-binding protein HU [Citreicella sp. SE45]
Length = 95
Score = 74.4 bits (182), Expect = 5e-12, Method: Composition-based stats.
Identities = 21/91 (23%), Positives = 41/91 (45%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ L+ +A++ + + ++ + +T+ +A+GG V + G G R+R R+
Sbjct: 5 MTKTQLVAALAEEM-GADKKTASAALDAITGIITKEVADGGAVTLPGVGKIYCRERPERM 63
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + E K LK+ +N
Sbjct: 64 VRNPATGEQFKKEADKQVKMTIAKALKDSVN 94
>gi|1280547|gb|AAC73087.1| histone-like protein HBbu [Borrelia burgdorferi]
gi|1280549|gb|AAC73088.1| histone-like protein HBbu [Borrelia burgdorferi]
gi|1280551|gb|AAC73089.1| histone-like protein HBbu [Borrelia burgdorferi]
Length = 108
Score = 74.4 bits (182), Expect = 5e-12, Method: Composition-based stats.
Identities = 32/94 (34%), Positives = 50/94 (53%), Gaps = 5/94 (5%)
Query: 2 IKSSLIGTIA----KKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRA 57
KS ++ I+ N KL + + +++ EE+ L + +E R FG+F VRKR
Sbjct: 10 TKSDVVNQISLNIRNNNLKLEKKYIRLVIDAFFEELKSNLCSNNVIEFRSFGTFEVRKRK 69
Query: 58 AR-LARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R AR P + + V + V +FR GK+LKER+
Sbjct: 70 GRLNARNPQTGEYVKVLDHHVAYFRPGKDLKERV 103
>gi|14194637|sp|Q9XB20|DBH_STRGN RecName: Full=DNA-binding protein HU
gi|5209334|gb|AAD40811.1|L40356_1 histone-like DNA-binding protein [Streptococcus gordonii]
Length = 91
Score = 74.4 bits (182), Expect = 5e-12, Method: Composition-based stats.
Identities = 32/90 (35%), Positives = 49/90 (54%), Gaps = 1/90 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K LI +A +L +D V+ + +T+ L+ G +V++ GFG+F VR+RAAR
Sbjct: 3 NKQDLIAKVAAAT-ELTKKDSAAAVDAVFAAVTEYLSKGEKVQLIGFGNFEVRERAARKG 61
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P K + VP F+AGK LK+ +
Sbjct: 62 RNPQTGKETKIAASKVPAFKAGKALKDAVK 91
>gi|268679600|ref|YP_003304031.1| histone family protein DNA-binding protein [Sulfurospirillum
deleyianum DSM 6946]
gi|268617631|gb|ACZ11996.1| histone family protein DNA-binding protein [Sulfurospirillum
deleyianum DSM 6946]
Length = 92
Score = 74.4 bits (182), Expect = 5e-12, Method: Composition-based stats.
Identities = 33/90 (36%), Positives = 50/90 (55%), Gaps = 1/90 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ I +++K L+ +D +K V+ LE ++ AL G V GFG+FS RAAR
Sbjct: 1 MKKAEFIQAVSEK-AGLSKKDTQKAVDAALEAISDALVAGKEVSFIGFGTFSTATRAARK 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
AR P +V+ V + F+ GK LK+ +
Sbjct: 60 ARVPGTDRVVDVAKTTAVKFKVGKKLKDVV 89
>gi|222083260|ref|YP_002542663.1| HNS-type DNA binding protein [Agrobacterium vitis S4]
gi|221738640|gb|ACM39478.1| HNS-type DNA binding protein [Agrobacterium vitis S4]
Length = 92
Score = 74.4 bits (182), Expect = 5e-12, Method: Composition-based stats.
Identities = 22/87 (25%), Positives = 35/87 (40%), Gaps = 1/87 (1%)
Query: 5 SLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLARAP 64
+ IA + L + IV + +++T+A G I FG F ++ R R P
Sbjct: 6 EIADKIAAEQ-NLPKAQAKTIVESVFKQITEAALAGAETSIPSFGKFKLKDTPEREGRNP 64
Query: 65 LAQKVISVEEKMVPFFRAGKNLKERLN 91
I + F GK +K+ LN
Sbjct: 65 ATGATIKIAASKKLTFTPGKAVKDALN 91
>gi|325285938|ref|YP_004261728.1| histone family protein DNA-binding protein [Cellulophaga lytica
DSM 7489]
gi|324321392|gb|ADY28857.1| histone family protein DNA-binding protein [Cellulophaga lytica
DSM 7489]
Length = 96
Score = 74.4 bits (182), Expect = 5e-12, Method: Composition-based stats.
Identities = 28/93 (30%), Positives = 45/93 (48%), Gaps = 1/93 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ ++ I+ K + DV+ V +EE+ +L NG V +RGFGSF ++ RA +
Sbjct: 1 MTKADIVSKISDKL-GIEKGDVQATVETFMEEVKTSLENGDNVYLRGFGSFIIKTRAEKT 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSP 93
R I + +P F+ K E + S
Sbjct: 60 GRNISKNTTIKIPAHNIPAFKPAKVFVEGVKSN 92
>gi|153007189|ref|YP_001381514.1| histone family protein DNA-binding protein [Anaeromyxobacter sp.
Fw109-5]
gi|152030762|gb|ABS28530.1| histone family protein DNA-binding protein [Anaeromyxobacter sp.
Fw109-5]
Length = 123
Score = 74.4 bits (182), Expect = 5e-12, Method: Composition-based stats.
Identities = 19/96 (19%), Positives = 41/96 (42%), Gaps = 1/96 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M ++ +A+ +L+ V ++ + + +T+ L G++ + G G+ + R AR+
Sbjct: 29 MTQAQFFQAVAE-GAQLSKAQVRQVFQAVEDVVTKKLKGEGKIPLGGLGAVKLVDRKARI 87
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDST 96
R P + I + + K LK+ N
Sbjct: 88 GRNPATGEQIKIPARTAIKITPAKGLKDIFNKKGKK 123
>gi|224025287|ref|ZP_03643653.1| hypothetical protein BACCOPRO_02026 [Bacteroides coprophilus DSM
18228]
gi|224018523|gb|EEF76521.1| hypothetical protein BACCOPRO_02026 [Bacteroides coprophilus DSM
18228]
Length = 93
Score = 74.0 bits (181), Expect = 5e-12, Method: Composition-based stats.
Identities = 28/94 (29%), Positives = 46/94 (48%), Gaps = 1/94 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ ++ IA + L Q V ++V ++ + ++ NG V +RGFGSF ++ RA +
Sbjct: 1 MTKADIVREIATQT-GLEKQVVLQVVEGFMDSVKSSMINGEEVYLRGFGSFIIKHRAEKT 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSPD 94
AR I V +P F+ K R+ S
Sbjct: 60 ARNISRNTTIIVPAHNIPAFKPSKAFAGRMKSDK 93
>gi|198276416|ref|ZP_03208947.1| hypothetical protein BACPLE_02611 [Bacteroides plebeius DSM
17135]
gi|313146782|ref|ZP_07808975.1| DNA-binding protein HU [Bacteroides fragilis 3_1_12]
gi|198270858|gb|EDY95128.1| hypothetical protein BACPLE_02611 [Bacteroides plebeius DSM
17135]
gi|313135549|gb|EFR52909.1| DNA-binding protein HU [Bacteroides fragilis 3_1_12]
Length = 93
Score = 74.0 bits (181), Expect = 5e-12, Method: Composition-based stats.
Identities = 24/94 (25%), Positives = 44/94 (46%), Gaps = 1/94 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ +I IA++ + +V +E + +++ G V +RGFGSF +++RA +
Sbjct: 1 MTKADIIARIAQET-GIEKSVATTVVEAFMESVRESMIAGNEVFLRGFGSFIIKQRAEKK 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSPD 94
AR I + VP F+ K + +
Sbjct: 60 ARNISKNTTIVIPAHSVPAFKPAKTFLDAVKEGK 93
>gi|297564907|ref|YP_003683879.1| histone family protein DNA-binding protein [Meiothermus silvanus
DSM 9946]
gi|296849356|gb|ADH62371.1| histone family protein DNA-binding protein [Meiothermus silvanus
DSM 9946]
Length = 96
Score = 74.0 bits (181), Expect = 6e-12, Method: Composition-based stats.
Identities = 32/91 (35%), Positives = 49/91 (53%), Gaps = 1/91 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ LI IA + + +D + V+ L + ALA+G +V++ GFG+F VRKR AR
Sbjct: 7 TKADLIDMIA-SSSGMKKKDAKTAVDHFLSHLQDALASGNKVQLTGFGTFEVRKRKARTG 65
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
P + I + P F+ GK LKE++
Sbjct: 66 VKPGTTQKIKIPASSYPAFKPGKALKEKVKK 96
>gi|313185029|gb|ADR50079.1| histone-like protein HBbu [Borrelia burgdorferi]
Length = 108
Score = 74.0 bits (181), Expect = 6e-12, Method: Composition-based stats.
Identities = 31/95 (32%), Positives = 49/95 (51%), Gaps = 5/95 (5%)
Query: 1 MIKSSLIGTIA----KKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKR 56
+ KS ++ I+ N KL + + +++ EE+ L +E R FG+F VRKR
Sbjct: 9 ITKSDIVDQISLNIRNNNLKLEKKYIRLVIDAFFEELKGNLCLNNVIEFRSFGTFEVRKR 68
Query: 57 AAR-LARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R AR P + + + V +FR GK+LKER+
Sbjct: 69 KGRLNARNPQTGEYVKGLDHHVAYFRPGKDLKERV 103
>gi|255534616|ref|YP_003094987.1| DNA-binding protein HU [Flavobacteriaceae bacterium 3519-10]
gi|255340812|gb|ACU06925.1| DNA-binding protein HU [Flavobacteriaceae bacterium 3519-10]
Length = 96
Score = 74.0 bits (181), Expect = 6e-12, Method: Composition-based stats.
Identities = 27/93 (29%), Positives = 48/93 (51%), Gaps = 1/93 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ L+ TI+ K + +K+V ++E+ ++ NG V +RGFGSF ++ RAA+
Sbjct: 1 MTKAELVSTISNKL-GTEKNETQKVVEAFMQEIRTSMYNGDNVYLRGFGSFVIKTRAAKT 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSP 93
R I + +P F+ K E++ +
Sbjct: 60 GRNISKNTAIEIPAHNIPAFKPSKTFVEKVKTK 92
>gi|240168953|ref|ZP_04747612.1| hypothetical protein MkanA1_06550 [Mycobacterium kansasii ATCC
12478]
Length = 217
Score = 74.0 bits (181), Expect = 6e-12, Method: Composition-based stats.
Identities = 29/90 (32%), Positives = 46/90 (51%), Gaps = 1/90 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI + +K + + V +++ + +A+ G V I GFG F R+RAAR+
Sbjct: 1 MNKAELIDVLTQKL-GSDRRQATAAVENVVDTIVRAVHKGDSVTITGFGVFEQRRRAARV 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
AR P + + V+ VP FR G K +
Sbjct: 60 ARNPRTGETVKVKPTSVPAFRPGAQFKAVV 89
>gi|114326682|ref|YP_743839.1| DNA-binding protein HU [Granulibacter bethesdensis CGDNIH1]
gi|114314856|gb|ABI60916.1| DNA-binding protein HU [Granulibacter bethesdensis CGDNIH1]
Length = 101
Score = 74.0 bits (181), Expect = 6e-12, Method: Composition-based stats.
Identities = 32/91 (35%), Positives = 44/91 (48%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M + LI IAK + V+ +V+ +E ++ L G V I G G F V +RAAR
Sbjct: 1 MNHADLIDKIAKSTDQ-TKATVDAVVSAAIETISATLKAGEEVRISGLGIFDVSERAARQ 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P I + FRAGK LK+ +N
Sbjct: 60 GRNPQTGATIEIAATRAARFRAGKALKDAVN 90
>gi|120437894|ref|YP_863580.1| histone-like DNA-binding protein [Gramella forsetii KT0803]
gi|117580044|emb|CAL68513.1| histone-like bacterial DNA-binding protein [Gramella forsetii
KT0803]
Length = 96
Score = 74.0 bits (181), Expect = 6e-12, Method: Composition-based stats.
Identities = 26/93 (27%), Positives = 46/93 (49%), Gaps = 1/93 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ ++ I++K + DV+ + ++E+ +L +G V +RGFGSF V+ RA +
Sbjct: 1 MTKADIVANISEKL-GMEKGDVQATIESFMDEVKTSLESGDNVYLRGFGSFVVKTRAEKT 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSP 93
R I + +P F+ K E + S
Sbjct: 60 GRNISKNTTIKIPAHNIPAFKPAKIFVEGVKSN 92
>gi|283769425|ref|ZP_06342323.1| DNA-binding protein HU [Bulleidia extructa W1219]
gi|283103950|gb|EFC05335.1| DNA-binding protein HU [Bulleidia extructa W1219]
Length = 96
Score = 74.0 bits (181), Expect = 6e-12, Method: Composition-based stats.
Identities = 30/92 (32%), Positives = 51/92 (55%), Gaps = 1/92 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K +L IA + +++ +D ++VN + +++T A+ G V I GFG F V ++AAR
Sbjct: 6 TKKTLAEGIAAEY-EVSKKDANELVNFVFDQITTAIKKGEEVSINGFGKFVVVEKAAREG 64
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLNSP 93
P + I ++ P F+A K LK+ +NS
Sbjct: 65 LNPATGEKIKIKASKAPKFKASKTLKDLVNSK 96
>gi|60681456|ref|YP_211600.1| putative histone-like DNA-binding protein [Bacteroides fragilis
NCTC 9343]
gi|60492890|emb|CAH07665.1| putative histone-like DNA-binding protein [Bacteroides fragilis
NCTC 9343]
Length = 91
Score = 74.0 bits (181), Expect = 6e-12, Method: Composition-based stats.
Identities = 25/87 (28%), Positives = 43/87 (49%), Gaps = 1/87 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K LI +A + LN ++ IV +++ M +A+ V + GFG+FS++ R AR
Sbjct: 1 MNKHDLIKKVALR-GNLNAKEASAIVEVVMNAMVEAILREESVTLVGFGTFSIKMRKARN 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLK 87
P + + + + V F G +K
Sbjct: 60 VLNPSTGENMVIPARKVVKFTPGYKMK 86
>gi|222080181|ref|YP_002540044.1| HNS-type DNA binding protein [Agrobacterium vitis S4]
gi|221738826|gb|ACM39605.1| HNS-type DNA binding protein [Agrobacterium vitis S4]
Length = 92
Score = 74.0 bits (181), Expect = 6e-12, Method: Composition-based stats.
Identities = 23/88 (26%), Positives = 34/88 (38%), Gaps = 1/88 (1%)
Query: 5 SLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLARAP 64
+ IA N L + IV + + + A + I GFG F V+ R R P
Sbjct: 6 EIADKIAADN-GLTKVQAKGIVEAVFQAIADAAGSDAETSIPGFGKFKVKASPEREGRNP 64
Query: 65 LAQKVISVEEKMVPFFRAGKNLKERLNS 92
+ ++V F K LK+ LN
Sbjct: 65 ATGEKMTVAASKKLTFAPAKALKDALNK 92
>gi|71083725|ref|YP_266445.1| DNA-binding protein [Candidatus Pelagibacter ubique HTCC1062]
gi|71062838|gb|AAZ21841.1| Bacterial DNA-binding protein [Candidatus Pelagibacter ubique
HTCC1062]
Length = 102
Score = 74.0 bits (181), Expect = 6e-12, Method: Composition-based stats.
Identities = 22/95 (23%), Positives = 48/95 (50%), Gaps = 1/95 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K LI +I + + E +++ L + L ++++ FG+FS+R + +R+
Sbjct: 9 TKKDLINSIYMQI-GFSKNISENLIDDFLITIVDNLKIEKKLKLSKFGTFSIRAKKSRIG 67
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDST 96
R P ++ ++ + V F+A K K+ +NS + +
Sbjct: 68 RNPKTKEQTTISNRDVVLFKASKEFKDLVNSKNDS 102
>gi|167754218|ref|ZP_02426345.1| hypothetical protein ALIPUT_02511 [Alistipes putredinis DSM
17216]
gi|237711927|ref|ZP_04542408.1| DNA-binding protein HU [Bacteroides sp. 9_1_42FAA]
gi|317474934|ref|ZP_07934203.1| bacterial DNA-binding protein [Bacteroides eggerthii 1_2_48FAA]
gi|167658843|gb|EDS02973.1| hypothetical protein ALIPUT_02511 [Alistipes putredinis DSM
17216]
gi|229454622|gb|EEO60343.1| DNA-binding protein HU [Bacteroides sp. 9_1_42FAA]
gi|316908837|gb|EFV30522.1| bacterial DNA-binding protein [Bacteroides eggerthii 1_2_48FAA]
Length = 93
Score = 74.0 bits (181), Expect = 7e-12, Method: Composition-based stats.
Identities = 27/94 (28%), Positives = 46/94 (48%), Gaps = 1/94 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ ++ IA + L Q V ++V ++ + ++ NG V +RGFGSF ++ RA +
Sbjct: 1 MTKADIVREIATQT-GLEKQVVLQVVEGFMDSVKSSMINGEEVYLRGFGSFIIKHRAEKT 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSPD 94
AR + V +P F+ K R+ S
Sbjct: 60 ARNISRNTTVIVPAHNIPAFKPSKAFAGRMKSDK 93
>gi|85859597|ref|YP_461799.1| DNA-binding protein HU [Syntrophus aciditrophicus SB]
gi|85722688|gb|ABC77631.1| DNA-binding protein HU [Syntrophus aciditrophicus SB]
Length = 93
Score = 74.0 bits (181), Expect = 7e-12, Method: Composition-based stats.
Identities = 22/90 (24%), Positives = 42/90 (46%), Gaps = 1/90 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ ++ + + ++ ++ IV E + L G V I GFG ++VR + R
Sbjct: 4 TKNEMMTMLYNQL-NISRKECVDIVESFFEIIKSELEKGNPVMISGFGKWTVRPKRERKG 62
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + +++ + V F+A NL +N
Sbjct: 63 RNPQTGEDLTITARKVVTFKASPNLISSIN 92
>gi|153011966|ref|YP_001373178.1| histone family protein DNA-binding protein [Ochrobactrum anthropi
ATCC 49188]
gi|151563854|gb|ABS17349.1| histone family protein DNA-binding protein [Ochrobactrum anthropi
ATCC 49188]
Length = 92
Score = 74.0 bits (181), Expect = 7e-12, Method: Composition-based stats.
Identities = 22/88 (25%), Positives = 37/88 (42%), Gaps = 1/88 (1%)
Query: 5 SLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLARAP 64
+ IA + L+ + IV + ++T+A G I FG F +++ R R P
Sbjct: 6 EIADKIASEQ-NLSKVQAKAIVESVFRQITEAALAGAETSIPSFGKFKLKETPEREGRNP 64
Query: 65 LAQKVISVEEKMVPFFRAGKNLKERLNS 92
I + F GK +K+ LN+
Sbjct: 65 ATGATIKIAAAKKLAFTPGKAVKDALNA 92
>gi|300775502|ref|ZP_07085363.1| integration host factor subunit alpha [Chryseobacterium gleum
ATCC 35910]
gi|300505529|gb|EFK36666.1| integration host factor subunit alpha [Chryseobacterium gleum
ATCC 35910]
Length = 96
Score = 74.0 bits (181), Expect = 7e-12, Method: Composition-based stats.
Identities = 27/93 (29%), Positives = 49/93 (52%), Gaps = 1/93 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ L+ TI+ K + +K+V ++E+ ++ NG V +RGFGSF ++ RAA+
Sbjct: 1 MTKAELVNTISNKL-GTEKNETQKVVEAFMQEIRTSMYNGDNVYLRGFGSFIIKTRAAKT 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSP 93
R I + +P F+ K+ E++ +
Sbjct: 60 GRNISKNTAIEIPAHNIPAFKPSKSFVEKVKTK 92
>gi|85706119|ref|ZP_01037214.1| DNA-binding protein HU [Roseovarius sp. 217]
gi|85669283|gb|EAQ24149.1| DNA-binding protein HU [Roseovarius sp. 217]
Length = 95
Score = 74.0 bits (181), Expect = 7e-12, Method: Composition-based stats.
Identities = 21/91 (23%), Positives = 42/91 (46%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ L+ +A + + + ++ ++ +T+ ++ GG V + G G R+R R+
Sbjct: 5 MTKTQLVAALADEM-GSDKKTAGAALDSVIAIITREVSAGGAVTLPGIGKIYCRERPERM 63
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + + E V K LK+ +N
Sbjct: 64 VRNPATGEQMKKEADKVVKMTIAKALKDSVN 94
>gi|119477609|ref|ZP_01617759.1| integration host factor, beta subunit [marine gamma
proteobacterium HTCC2143]
gi|119449112|gb|EAW30352.1| integration host factor, beta subunit [marine gamma
proteobacterium HTCC2143]
Length = 68
Score = 74.0 bits (181), Expect = 7e-12, Method: Composition-based stats.
Identities = 26/56 (46%), Positives = 36/56 (64%)
Query: 37 LANGGRVEIRGFGSFSVRKRAARLARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
LA+G R+EIRGFGSFS+ R R R P + + + K VP F+ GK ++ER+N
Sbjct: 7 LASGERIEIRGFGSFSLHYREPRQGRNPKTGEAVELNGKYVPHFKPGKEMRERVNE 62
>gi|209885048|ref|YP_002288905.1| DNA-binding protein HU 1 [Oligotropha carboxidovorans OM5]
gi|209873244|gb|ACI93040.1| DNA-binding protein HU 1 [Oligotropha carboxidovorans OM5]
Length = 99
Score = 74.0 bits (181), Expect = 7e-12, Method: Composition-based stats.
Identities = 30/85 (35%), Positives = 48/85 (56%), Gaps = 1/85 (1%)
Query: 6 LIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLARAPL 65
L +A+++ +L+ + E I+ L+ ++T+ L G R+ I G G VRKRAAR+ R P
Sbjct: 16 LAAALAEEH-ELSKKTAEAILTDLVTKVTKHLKKGDRIRIVGLGILQVRKRAARMGRNPA 74
Query: 66 AQKVISVEEKMVPFFRAGKNLKERL 90
+ I ++ FRA K LKE +
Sbjct: 75 TGEAIHIKASKKVAFRASKELKEAI 99
>gi|27380036|ref|NP_771565.1| DNA-binding protein HU [Bradyrhizobium japonicum USDA 110]
gi|27353190|dbj|BAC50190.1| hup [Bradyrhizobium japonicum USDA 110]
Length = 99
Score = 74.0 bits (181), Expect = 7e-12, Method: Composition-based stats.
Identities = 29/85 (34%), Positives = 43/85 (50%), Gaps = 1/85 (1%)
Query: 6 LIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLARAPL 65
L IA+ + L+ + E ++ ++E + + L G RV I G G VRKRAAR R P
Sbjct: 16 LAADIAE-SQDLSKKHAEAVLTDMVELIAKHLKKGDRVRIVGLGILQVRKRAARTGRNPA 74
Query: 66 AQKVISVEEKMVPFFRAGKNLKERL 90
+ I ++ FR K LKE +
Sbjct: 75 TGEPIHIKASKKVAFRPVKELKEAI 99
>gi|62632025|gb|AAX89117.1| laminin-binding protein [Mycobacterium ulcerans]
Length = 220
Score = 74.0 bits (181), Expect = 7e-12, Method: Composition-based stats.
Identities = 29/90 (32%), Positives = 46/90 (51%), Gaps = 1/90 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI + +K + + V +++ + +A+ G V I GFG F R+RAAR+
Sbjct: 1 MNKAELIDVLTQKL-GSDRRQATAAVENVVDTIVRAVHKGDSVTITGFGVFEQRRRAARV 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
AR P + + V+ VP FR G K +
Sbjct: 60 ARNPRTGETVKVKPTSVPAFRPGAQFKAVV 89
>gi|118617556|ref|YP_905888.1| DNA-binding protein HU HupB-like protein [Mycobacterium ulcerans
Agy99]
gi|62632019|gb|AAX89114.1| laminin-binding protein [Mycobacterium ulcerans]
gi|118569666|gb|ABL04417.1| DNA-binding protein Hu HupB-like protein [Mycobacterium ulcerans
Agy99]
Length = 229
Score = 74.0 bits (181), Expect = 7e-12, Method: Composition-based stats.
Identities = 29/90 (32%), Positives = 46/90 (51%), Gaps = 1/90 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI + +K + + V +++ + +A+ G V I GFG F R+RAAR+
Sbjct: 1 MNKAELIDVLTQKL-GSDRRQATAAVENVVDTIVRAVHKGDSVTITGFGVFEQRRRAARV 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
AR P + + V+ VP FR G K +
Sbjct: 60 ARNPRTGETVKVKPTSVPAFRPGAQFKAVV 89
>gi|62632023|gb|AAX89116.1| laminin-binding protein [Mycobacterium ulcerans]
Length = 229
Score = 74.0 bits (181), Expect = 7e-12, Method: Composition-based stats.
Identities = 29/90 (32%), Positives = 46/90 (51%), Gaps = 1/90 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI + +K + + V +++ + +A+ G V I GFG F R+RAAR+
Sbjct: 1 MNKAELIDVLTQKL-GSDRRQATAAVENVVDTIVRAVHKGDSVTITGFGVFEQRRRAARV 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
AR P + + V+ VP FR G K +
Sbjct: 60 ARNPRTGETVKVKPTSVPAFRPGAQFKAVV 89
>gi|150005930|ref|YP_001300674.1| DNA-binding protein HU [Bacteroides vulgatus ATCC 8482]
gi|149934354|gb|ABR41052.1| DNA-binding protein HU [Bacteroides vulgatus ATCC 8482]
Length = 94
Score = 73.7 bits (180), Expect = 7e-12, Method: Composition-based stats.
Identities = 28/95 (29%), Positives = 47/95 (49%), Gaps = 1/95 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ L I+ K + Q + +V L+ E+ ++L G V +RGFGSF V++RA +
Sbjct: 1 MTKAELCKKISAKT-GCDAQTILAVVESLMVEVKESLEKGENVYLRGFGSFIVKQRAEKT 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDS 95
R I + +P F+ K L + +N +
Sbjct: 60 TRNISKNTTIIIPAHNIPAFKPSKELVKLVNKLED 94
>gi|221128059|ref|XP_002155705.1| PREDICTED: similar to hlpA [Hydra magnipapillata]
gi|260222710|emb|CBA32540.1| DNA-binding protein HU-alpha [Curvibacter putative symbiont of
Hydra magnipapillata]
Length = 94
Score = 73.7 bits (180), Expect = 7e-12, Method: Composition-based stats.
Identities = 26/83 (31%), Positives = 43/83 (51%), Gaps = 1/83 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K LI +A K+ +L+ + ++ L+E +T +A V++ GFG+F KRAAR
Sbjct: 1 MNKGELIEALAAKS-ELSKAAAGRTLDALIEIITAKVAKKEDVQLIGFGTFKAAKRAART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAG 83
+ P + + + VP F G
Sbjct: 60 GKNPRTGEALKITATTVPKFTPG 82
>gi|62632021|gb|AAX89115.1| laminin-binding protein [Mycobacterium ulcerans]
Length = 229
Score = 73.7 bits (180), Expect = 7e-12, Method: Composition-based stats.
Identities = 29/90 (32%), Positives = 46/90 (51%), Gaps = 1/90 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI + +K + + V +++ + +A+ G V I GFG F R+RAAR+
Sbjct: 1 MNKAELIDVLTQKL-GSDRRQATAAVENVVDTIVRAVHKGDSVTITGFGVFEQRRRAARV 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
AR P + + V+ VP FR G K +
Sbjct: 60 ARNPRTGETVKVKPTSVPAFRPGAQFKAVV 89
>gi|196228197|ref|ZP_03127064.1| histone family protein DNA-binding protein [Chthoniobacter flavus
Ellin428]
gi|196227600|gb|EDY22103.1| histone family protein DNA-binding protein [Chthoniobacter flavus
Ellin428]
Length = 92
Score = 73.7 bits (180), Expect = 7e-12, Method: Composition-based stats.
Identities = 27/92 (29%), Positives = 45/92 (48%), Gaps = 1/92 (1%)
Query: 1 MIKSSLIGTIAKKNP-KLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAAR 59
M K+ L+ + K ++ E+ V ++E + L G V++ GFG+F V R AR
Sbjct: 1 MNKAELVEAVQKSLGKDVSKAQAERSVEAVIEGIKSGLKKGKPVQLVGFGTFKVTNRKAR 60
Query: 60 LARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
+ P + I ++ F AGK+LK +L
Sbjct: 61 MGINPKTGEKIKIKASKSVKFAAGKDLKSKLK 92
>gi|163783706|ref|ZP_02178693.1| integration host factor beta subunit [Hydrogenivirga sp.
128-5-R1-1]
gi|159881031|gb|EDP74548.1| integration host factor beta subunit [Hydrogenivirga sp.
128-5-R1-1]
Length = 94
Score = 73.7 bits (180), Expect = 7e-12, Method: Composition-based stats.
Identities = 34/93 (36%), Positives = 54/93 (58%), Gaps = 1/93 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS + IAK+ ++ + IV+ + + M +AL G +VEIRG G+F ++K+ +R
Sbjct: 1 MKKSDITKEIAKRR-GISQRKARIIVDQIFQAMAEALTRGEKVEIRGLGTFKIKKKPSRF 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSP 93
+ P I V+E+ VP F+ GK +K LNS
Sbjct: 60 VKDPRTGVEIFVKERYVPTFKMGKLIKNHLNSK 92
>gi|58979383|gb|AAW83356.1| DNA-binding protein HU [Campylobacter coli]
Length = 96
Score = 73.7 bits (180), Expect = 8e-12, Method: Composition-based stats.
Identities = 32/86 (37%), Positives = 43/86 (50%), Gaps = 1/86 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ I +A + L +D + ++ +T LA G V GFG+FS +RAAR
Sbjct: 1 MTKADFISQVA-QTAGLTKKDAAAATDAVISTITDVLAKGDSVSFIGFGTFSTAERAARE 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNL 86
AR P K I V V F+ GKNL
Sbjct: 60 ARVPSTGKTIKVPATRVAKFKVGKNL 85
>gi|88801872|ref|ZP_01117400.1| DNA-binding protein HU [Polaribacter irgensii 23-P]
gi|88782530|gb|EAR13707.1| DNA-binding protein HU [Polaribacter irgensii 23-P]
Length = 96
Score = 73.7 bits (180), Expect = 8e-12, Method: Composition-based stats.
Identities = 28/93 (30%), Positives = 44/93 (47%), Gaps = 1/93 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ ++ I+ K+ + DV V + E+ AL NG V +RGFGSF ++ RA +
Sbjct: 1 MTKADIVSKISDKS-GIEKTDVLATVEAFMTEVKGALENGDNVYLRGFGSFIIKTRAEKT 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSP 93
R I + +P F+ K E + S
Sbjct: 60 GRNISKNTTIKIPSHNIPAFKPAKTFTEGVKSK 92
>gi|298489534|ref|ZP_07007542.1| DNA-binding protein HU, form N [Pseudomonas savastanoi pv.
savastanoi NCPPB 3335]
gi|298155938|gb|EFH97050.1| DNA-binding protein HU, form N [Pseudomonas savastanoi pv.
savastanoi NCPPB 3335]
Length = 97
Score = 73.7 bits (180), Expect = 8e-12, Method: Composition-based stats.
Identities = 23/91 (25%), Positives = 36/91 (39%), Gaps = 1/91 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K L+ IA+ K + L + + L +G + + G G V +R AR
Sbjct: 4 TKDQLVAGIAEAI-DAPKTTARKALEQLGQIVADQLESGAEITLPGIGKLKVAERPARTG 62
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P I + K V F + K L + +N
Sbjct: 63 RNPSTGAAIEIAAKKVVKFVSAKVLNDAINK 93
>gi|157737565|ref|YP_001490248.1| DNA-binding protein HU [Arcobacter butzleri RM4018]
gi|157699419|gb|ABV67579.1| DNA-binding protein HU [Arcobacter butzleri RM4018]
Length = 91
Score = 73.7 bits (180), Expect = 8e-12, Method: Composition-based stats.
Identities = 32/90 (35%), Positives = 48/90 (53%), Gaps = 1/90 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ I +A K L+ +D + V+ +L+ +T+AL V GFG+F+ RAAR
Sbjct: 1 MNKAEFIDAVATK-AGLSKKDAKGAVDAVLDTITEALVKKESVSFIGFGTFATAARAART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
A+ P K + V V F+ GK LKE +
Sbjct: 60 AKVPGTTKTVDVPATTVAKFKVGKALKEAV 89
>gi|148244734|ref|YP_001219428.1| integration host factor, alpha subunit [Candidatus
Vesicomyosocius okutanii HA]
gi|146326561|dbj|BAF61704.1| integration host factor, alpha subunit [Candidatus
Vesicomyosocius okutanii HA]
Length = 109
Score = 73.7 bits (180), Expect = 8e-12, Method: Composition-based stats.
Identities = 20/87 (22%), Positives = 47/87 (54%), Gaps = 1/87 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
+ K + + K+ + + I + +++ Q LA+G V++ FG+F +R++++R+
Sbjct: 3 ITKKDIANVLV-KSMDITHVQALSITHDFFDQIKQTLASGESVKLSSFGNFIIREKSSRV 61
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLK 87
R P +++ + + V F++G LK
Sbjct: 62 GRNPKTGEMVEISARRVVVFKSGPKLK 88
>gi|293363573|ref|ZP_06610329.1| DNA-binding protein HU [Mycoplasma alligatoris A21JP2]
gi|292552922|gb|EFF41676.1| DNA-binding protein HU [Mycoplasma alligatoris A21JP2]
Length = 92
Score = 73.7 bits (180), Expect = 8e-12, Method: Composition-based stats.
Identities = 22/91 (24%), Positives = 42/91 (46%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K + IA K ++V K + + + + L +V++ G+FS + + R
Sbjct: 1 MTKKEFVMKIANKT-GYTVKEVNKFFDAFVFYLKEELIGEEKVQLSTLGTFSTQIKRKRE 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
+ + IS+ E+ V FR K L+E ++
Sbjct: 60 TKNAFTGENISIPERRVVRFRPSKYLREIVD 90
>gi|118580311|ref|YP_901561.1| histone family protein DNA-binding protein [Pelobacter
propionicus DSM 2379]
gi|118503021|gb|ABK99503.1| histone family protein DNA-binding protein [Pelobacter
propionicus DSM 2379]
Length = 126
Score = 73.7 bits (180), Expect = 8e-12, Method: Composition-based stats.
Identities = 32/88 (36%), Positives = 46/88 (52%), Gaps = 1/88 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ L+ IA+ +L EK++++ + T AL G +V I GFG+FS R AR
Sbjct: 1 MNKTELVAKIAE-GAELTKVQAEKVLDIFIASTTAALKAGDKVAIIGFGAFSAVTRKART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKE 88
R P K + + EK F GK LK+
Sbjct: 60 GRNPQTGKALQIAEKTNGKFTPGKALKD 87
>gi|295098884|emb|CBK87973.1| Bacterial nucleoid DNA-binding protein [Eubacterium cylindroides
T2-87]
Length = 96
Score = 73.7 bits (180), Expect = 8e-12, Method: Composition-based stats.
Identities = 23/79 (29%), Positives = 44/79 (55%)
Query: 14 NPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLARAPLAQKVISVE 73
N ++ +D + ++ EM+++LA+ G V+I GFG F + R R+ P+ ++ I +
Sbjct: 17 NLNISKKDASYAIELIFNEMSESLASDGYVDISGFGKFEIFFRKERMGINPVTKERIMIP 76
Query: 74 EKMVPFFRAGKNLKERLNS 92
+P FR + LK + N+
Sbjct: 77 ATKLPKFRPSQTLKNKCNN 95
>gi|62632033|gb|AAX89121.1| laminin-binding protein [Mycobacterium ulcerans]
Length = 211
Score = 73.7 bits (180), Expect = 8e-12, Method: Composition-based stats.
Identities = 29/90 (32%), Positives = 46/90 (51%), Gaps = 1/90 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI + +K + + V +++ + +A+ G V I GFG F R+RAAR+
Sbjct: 1 MNKAELIDVLTQKL-GSDRRQATAAVENVVDTIVRAVHKGDSVTITGFGVFEQRRRAARV 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
AR P + + V+ VP FR G K +
Sbjct: 60 ARNPRTGETVKVKPTSVPAFRPGAQFKAVV 89
>gi|149921263|ref|ZP_01909719.1| DNA-binding protein HU [Plesiocystis pacifica SIR-1]
gi|149817923|gb|EDM77385.1| DNA-binding protein HU [Plesiocystis pacifica SIR-1]
Length = 241
Score = 73.7 bits (180), Expect = 8e-12, Method: Composition-based stats.
Identities = 21/102 (20%), Positives = 42/102 (41%), Gaps = 10/102 (9%)
Query: 1 MIKSSLIGTIAKKN---PKLNYQDVEKIVNMLLEEMTQALANGG-------RVEIRGFGS 50
M K+ LI IA+ P++ + + +I+++ E++ R FG+
Sbjct: 1 MTKAELIDRIARNRDLPPEVTKKVIAQILDLAFSELSTYFVRTRLTRSSTPRFTFPKFGT 60
Query: 51 FSVRKRAARLARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
++ + R+ R P + + +E F+ LK LN
Sbjct: 61 WTKKTRSGRRGVNPRTLEPMDIEACDTIDFKPSAELKRLLNE 102
>gi|77457211|ref|YP_346716.1| histone-like DNA-binding protein [Pseudomonas fluorescens Pf0-1]
gi|77381214|gb|ABA72727.1| putative DNA-binding protein [Pseudomonas fluorescens Pf0-1]
Length = 93
Score = 73.7 bits (180), Expect = 8e-12, Method: Composition-based stats.
Identities = 24/91 (26%), Positives = 35/91 (38%), Gaps = 1/91 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K LI IA+ ++ L + + L NGG + + G G V +R AR
Sbjct: 4 TKDQLIADIAEAI-DAPKTTARNALDQLGQIVADQLENGGEITLPGIGKLKVTERPARTG 62
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P I + K V K L + +N
Sbjct: 63 RNPSTGAAIEIPAKKVIKLVVAKGLTDAVNK 93
>gi|317476084|ref|ZP_07935336.1| bacterial DNA-binding protein [Bacteroides eggerthii 1_2_48FAA]
gi|316907722|gb|EFV29424.1| bacterial DNA-binding protein [Bacteroides eggerthii 1_2_48FAA]
Length = 93
Score = 73.7 bits (180), Expect = 8e-12, Method: Composition-based stats.
Identities = 23/94 (24%), Positives = 43/94 (45%), Gaps = 1/94 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ +I IA+ + +V +E + +++ G V +RGFGSF ++++A +
Sbjct: 1 MTKADIIARIAQDT-GIEKSVATTVVEAFMESVRESMIAGNEVFLRGFGSFILKQKAEKK 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSPD 94
AR I + VP F+ K + +
Sbjct: 60 ARNFSKNTTIVIPAHHVPAFKPAKTFLDAVKEGK 93
>gi|313678363|ref|YP_004056103.1| DNA-binding protein HU [Mycoplasma bovis PG45]
gi|312950746|gb|ADR25341.1| DNA-binding protein HU [Mycoplasma bovis PG45]
Length = 91
Score = 73.7 bits (180), Expect = 8e-12, Method: Composition-based stats.
Identities = 24/91 (26%), Positives = 40/91 (43%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K I IA K +++ + ++ + + + + L +V++ G F R R R
Sbjct: 1 MTKKEFIKAIANKM-EVSVKKADQFFDAFVFVLKEELIAENKVQLSSLGIFETRIRRGRD 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
P +SV EK V F K L+E +N
Sbjct: 60 TINPFTMNELSVPEKRVIKFTPSKYLRELVN 90
>gi|256419984|ref|YP_003120637.1| histone family protein DNA-binding protein [Chitinophaga pinensis
DSM 2588]
gi|256034892|gb|ACU58436.1| histone family protein DNA-binding protein [Chitinophaga pinensis
DSM 2588]
Length = 95
Score = 73.7 bits (180), Expect = 8e-12, Method: Composition-based stats.
Identities = 32/95 (33%), Positives = 49/95 (51%), Gaps = 1/95 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI IA+K + DV + + +E+ +ALANG + IRGFGSF +KRAA++
Sbjct: 1 MRKADLINNIAEKT-GIPKVDVLVTLEAMFKEVKEALANGEHIYIRGFGSFITKKRAAKI 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDS 95
R + + E +P F+ K + S
Sbjct: 60 GRNIKKNVAVEIPEHFIPAFKPSKEFVAEVKKLKS 94
>gi|225010184|ref|ZP_03700656.1| histone family protein DNA-binding protein [Flavobacteria
bacterium MS024-3C]
gi|225005663|gb|EEG43613.1| histone family protein DNA-binding protein [Flavobacteria
bacterium MS024-3C]
Length = 96
Score = 73.7 bits (180), Expect = 8e-12, Method: Composition-based stats.
Identities = 26/93 (27%), Positives = 46/93 (49%), Gaps = 1/93 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ ++ I++K + D++ V +EE+ +L +G V +RGFGSF ++ RA +
Sbjct: 1 MTKADIVTKISEKL-GIEKGDIQATVEAFMEEVKTSLESGDNVYLRGFGSFIIKTRAEKT 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSP 93
R I + +P F+ K E + S
Sbjct: 60 GRNISKNTTIKIPAHNIPAFKPAKVFVEGVKSN 92
>gi|218666551|ref|YP_002426854.1| DNA-binding protein HU family protein [Acidithiobacillus
ferrooxidans ATCC 23270]
gi|218518764|gb|ACK79350.1| DNA-binding protein HU family protein [Acidithiobacillus
ferrooxidans ATCC 23270]
Length = 192
Score = 73.7 bits (180), Expect = 9e-12, Method: Composition-based stats.
Identities = 13/71 (18%), Positives = 29/71 (40%)
Query: 22 VEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLARAPLAQKVISVEEKMVPFFR 81
+ + + + + ++ I + R+AR R + I + + V F+
Sbjct: 122 AARFLEAFARTIRAEMHSAEKILIPEVDTLHFTNRSARKGRNLATGEKIQIPARRVVTFK 181
Query: 82 AGKNLKERLNS 92
A K ++R+NS
Sbjct: 182 ATKTFQDRVNS 192
>gi|163785054|ref|ZP_02179777.1| Histone-like DNA-binding protein [Hydrogenivirga sp. 128-5-R1-1]
gi|159879681|gb|EDP73462.1| Histone-like DNA-binding protein [Hydrogenivirga sp. 128-5-R1-1]
Length = 97
Score = 73.7 bits (180), Expect = 9e-12, Method: Composition-based stats.
Identities = 31/96 (32%), Positives = 51/96 (53%), Gaps = 4/96 (4%)
Query: 1 MIKSSLIGTIAK-KNPKLNYQDVEKIVNMLLEEMTQALANG---GRVEIRGFGSFSVRKR 56
M K ++ I K+ L +D++ IV+ L + L NG +++I GFG+F V+KR
Sbjct: 1 MTKIDIVEWILDNKDINLTKKDIKIIVDELFSLIENELKNGQDGKKIQISGFGTFFVKKR 60
Query: 57 AARLARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
A++ R P + V E++ F+ GK L +NS
Sbjct: 61 KAKVGRNPRTNEEKIVPERLGVSFKPGKKLINEINS 96
>gi|29346321|ref|NP_809824.1| putative integration host factor IHF subunit alpha [Bacteroides
thetaiotaomicron VPI-5482]
gi|253568258|ref|ZP_04845669.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
gi|29338216|gb|AAO76018.1| putative integration host factor IHF alpha subunit [Bacteroides
thetaiotaomicron VPI-5482]
gi|251842331|gb|EES70411.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
Length = 487
Score = 73.7 bits (180), Expect = 9e-12, Method: Composition-based stats.
Identities = 22/90 (24%), Positives = 39/90 (43%), Gaps = 1/90 (1%)
Query: 4 SSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLARA 63
LI +A K+ + +D E V + QAL N V+I+G G+F + +R +
Sbjct: 8 QDLIDLLAAKHS-MTKKDAEAFVKEFFLLIEQALENEKTVKIKGLGTFKLVDVDSRESVN 66
Query: 64 PLAQKVISVEEKMVPFFRAGKNLKERLNSP 93
+ ++ F NL++ +N P
Sbjct: 67 VNTGERFQIKGHTKVSFTPDTNLRDTINKP 96
>gi|305666098|ref|YP_003862385.1| DNA-binding protein HU [Maribacter sp. HTCC2170]
gi|88707532|gb|EAQ99775.1| DNA-binding protein HU [Maribacter sp. HTCC2170]
Length = 96
Score = 73.7 bits (180), Expect = 9e-12, Method: Composition-based stats.
Identities = 27/93 (29%), Positives = 45/93 (48%), Gaps = 1/93 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ ++ I+ K + DV+ V +EE+ +L +G V +RGFGSF ++ RA +
Sbjct: 1 MTKAEIVSKISDKL-GIEKGDVQATVESFMEEVKTSLESGDNVYLRGFGSFIIKTRAEKT 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSP 93
R I + +P F+ K E + S
Sbjct: 60 GRNISKNTTIKIPAHNIPAFKPAKVFVEGVKSN 92
>gi|288818327|ref|YP_003432675.1| integration host factor alpha subunit [Hydrogenobacter
thermophilus TK-6]
gi|288787727|dbj|BAI69474.1| integration host factor alpha subunit [Hydrogenobacter
thermophilus TK-6]
gi|308751924|gb|ADO45407.1| histone family protein DNA-binding protein [Hydrogenobacter
thermophilus TK-6]
Length = 100
Score = 73.7 bits (180), Expect = 9e-12, Method: Composition-based stats.
Identities = 26/92 (28%), Positives = 44/92 (47%), Gaps = 1/92 (1%)
Query: 1 MIKSSLIGTI-AKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAAR 59
M + S++ + N L+ + + I+N + +++ QAL G V+I GFG+F VR R
Sbjct: 1 MTRKSIVDDLWKDGNSGLSKKTLYSIINYIFDQINQALVEGQEVKISGFGTFRVRHTKGR 60
Query: 60 LARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P ++ + K + K L LN
Sbjct: 61 RGRNPRTGEMRVIHPKRTVQLKPSKKLTTELN 92
>gi|195953183|ref|YP_002121473.1| histone family protein DNA-binding protein [Hydrogenobaculum sp.
Y04AAS1]
gi|195932795|gb|ACG57495.1| histone family protein DNA-binding protein [Hydrogenobaculum sp.
Y04AAS1]
Length = 99
Score = 73.7 bits (180), Expect = 9e-12, Method: Composition-based stats.
Identities = 25/99 (25%), Positives = 50/99 (50%), Gaps = 1/99 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS +I I K + +D++ ++ L+ + + L R+E+R G F ++K+ +++
Sbjct: 1 MKKSDIIKQI-DKYTNYSQKDIKLVIEYFLDAIMEGLIQDERIELRRLGIFLLKKKPSKM 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDSTLSN 99
P V E+ +P+F+ GK +K+ LN +
Sbjct: 60 VINPRTGVQTLVSERYLPYFKMGKYIKKELNKHQANAKK 98
>gi|86131320|ref|ZP_01049919.1| DNA-binding protein HU [Dokdonia donghaensis MED134]
gi|332292027|ref|YP_004430636.1| histone family protein DNA-binding protein [Krokinobacter
diaphorus 4H-3-7-5]
gi|85818731|gb|EAQ39891.1| DNA-binding protein HU [Dokdonia donghaensis MED134]
gi|332170113|gb|AEE19368.1| histone family protein DNA-binding protein [Krokinobacter
diaphorus 4H-3-7-5]
Length = 96
Score = 73.7 bits (180), Expect = 9e-12, Method: Composition-based stats.
Identities = 24/93 (25%), Positives = 45/93 (48%), Gaps = 1/93 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ ++ +++K + DV+ + +EE+ +L G V +RGFGSF ++ RA +
Sbjct: 1 MTKADIVAKVSEKL-GIEKNDVQATIESFMEEVKTSLEGGDNVYLRGFGSFIIKTRAEKT 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSP 93
R I + +P F+ K E + +
Sbjct: 60 GRNISKNTTIKIPAHNIPAFKPAKVFVEGVKTN 92
>gi|298530305|ref|ZP_07017707.1| histone family protein DNA-binding protein [Desulfonatronospira
thiodismutans ASO3-1]
gi|298509679|gb|EFI33583.1| histone family protein DNA-binding protein [Desulfonatronospira
thiodismutans ASO3-1]
Length = 96
Score = 73.7 bits (180), Expect = 9e-12, Method: Composition-based stats.
Identities = 21/91 (23%), Positives = 40/91 (43%), Gaps = 1/91 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
KS L+ + +++ +V+ + LL+ + QA+ + I GFG F + R
Sbjct: 6 TKSDLVDRVYEQS-DRKRAEVKGQIEHLLDIIKQAIKKDHSLLISGFGKFETYDKKPRKG 64
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P + I + + V FR + + +N
Sbjct: 65 RNPQTSEAIILPGRKVVVFRLSRKFRSEINQ 95
>gi|315122317|ref|YP_004062806.1| integration host factor subunit alpha [Candidatus Liberibacter
solanacearum CLso-ZC1]
gi|313495719|gb|ADR52318.1| integration host factor subunit alpha [Candidatus Liberibacter
solanacearum CLso-ZC1]
Length = 110
Score = 73.7 bits (180), Expect = 9e-12, Method: Composition-based stats.
Identities = 25/90 (27%), Positives = 46/90 (51%), Gaps = 1/90 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
+ +S L +I+ KN L+ +D V + E+ + A G ++I F +F VRK+ R+
Sbjct: 5 ITRSDLAKSIS-KNFGLSRKDSTFFVTTVFNEICDSAARGEAIKISSFATFRVRKKGPRV 63
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R + + + + V F+A LK+R+
Sbjct: 64 GRNLQTNQEVMIGSRRVMVFKASDVLKKRI 93
>gi|218666994|ref|YP_002426010.1| integration host factor, alpha subunit, putative
[Acidithiobacillus ferrooxidans ATCC 23270]
gi|218519207|gb|ACK79793.1| integration host factor, alpha subunit, putative
[Acidithiobacillus ferrooxidans ATCC 23270]
Length = 107
Score = 73.7 bits (180), Expect = 9e-12, Method: Composition-based stats.
Identities = 20/92 (21%), Positives = 41/92 (44%), Gaps = 1/92 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
+ K + + + + E+ V+ E M A+ +++ GFG F+VR +++R
Sbjct: 3 ITKKDVANHLWE-VGGWTHPQAEQFVDAFFEHMRAAIITESELKLSGFGRFTVRAKSSRP 61
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P + ++ + V F A L+ + N
Sbjct: 62 GRNPKTGQPYEIKARRVVTFSASALLRAKSNQ 93
>gi|114765808|ref|ZP_01444901.1| DNA-binding protein HU [Pelagibaca bermudensis HTCC2601]
gi|114541807|gb|EAU44844.1| DNA-binding protein HU [Roseovarius sp. HTCC2601]
Length = 95
Score = 73.7 bits (180), Expect = 9e-12, Method: Composition-based stats.
Identities = 21/91 (23%), Positives = 40/91 (43%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ L+ +A++ + + ++ + +T+ +A GG V + G G R+R R+
Sbjct: 5 MTKTQLVAALAEEM-GADKKTASTALDAITGIITKEVAEGGAVTLPGVGKIYCRERPERM 63
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + E K LK+ +N
Sbjct: 64 VRNPATGEQFKKEADKQVKMTIAKALKDSVN 94
>gi|62632027|gb|AAX89118.1| laminin-binding protein [Mycobacterium ulcerans]
Length = 220
Score = 73.3 bits (179), Expect = 9e-12, Method: Composition-based stats.
Identities = 29/90 (32%), Positives = 46/90 (51%), Gaps = 1/90 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI + +K + + V +++ + +A+ G V I GFG F R+RAAR+
Sbjct: 1 MNKAELIDVLTQKL-GSDRRQATAAVENVVDTIVRAVHKGDSVTITGFGVFEQRRRAARV 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
AR P + + V+ VP FR G K +
Sbjct: 60 ARNPRTGETVKVKPTSVPAFRPGAQFKAVV 89
>gi|183981741|ref|YP_001850032.1| DNA-binding protein HU, HupB [Mycobacterium marinum M]
gi|62632029|gb|AAX89119.1| laminin-binding protein [Mycobacterium ulcerans]
gi|183175067|gb|ACC40177.1| DNA-binding protein Hu, HupB [Mycobacterium marinum M]
Length = 220
Score = 73.3 bits (179), Expect = 9e-12, Method: Composition-based stats.
Identities = 29/90 (32%), Positives = 46/90 (51%), Gaps = 1/90 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI + +K + + V +++ + +A+ G V I GFG F R+RAAR+
Sbjct: 1 MNKAELIDVLTQKL-GSDRRQATAAVENVVDTIVRAVHKGDSVTITGFGVFEQRRRAARV 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
AR P + + V+ VP FR G K +
Sbjct: 60 ARNPRTGETVKVKPTSVPAFRPGAQFKAVV 89
>gi|62632031|gb|AAX89120.1| laminin-binding protein [Mycobacterium ulcerans]
Length = 211
Score = 73.3 bits (179), Expect = 9e-12, Method: Composition-based stats.
Identities = 29/90 (32%), Positives = 46/90 (51%), Gaps = 1/90 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI + +K + + V +++ + +A+ G V I GFG F R+RAAR+
Sbjct: 1 MNKAELIDVLTQKL-GSDRRQATAAVENVVDTIVRAVHKGDSVTITGFGVFEQRRRAARV 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
AR P + + V+ VP FR G K +
Sbjct: 60 ARNPRTGETVKVKPTSVPAFRPGAQFKAVV 89
>gi|76798122|ref|ZP_00780376.1| HU like DNA-binding protein [Streptococcus agalactiae 18RS21]
gi|76586530|gb|EAO63034.1| HU like DNA-binding protein [Streptococcus agalactiae 18RS21]
Length = 85
Score = 73.3 bits (179), Expect = 9e-12, Method: Composition-based stats.
Identities = 31/86 (36%), Positives = 47/86 (54%), Gaps = 1/86 (1%)
Query: 6 LIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLARAPL 65
LI +A+ +L +D V+ + + LA G +V++ GFG+F VR+RAAR R P
Sbjct: 1 LIAKVAEAT-ELTKKDSAAAVDAVFAAVADYLAEGEKVQLIGFGNFEVRERAARKGRNPQ 59
Query: 66 AQKVISVEEKMVPFFRAGKNLKERLN 91
I + VP F+AGK LK+ +
Sbjct: 60 TGAEIEIAASKVPAFKAGKALKDAVK 85
>gi|297569210|ref|YP_003690554.1| histone family protein DNA-binding protein [Desulfurivibrio
alkaliphilus AHT2]
gi|296925125|gb|ADH85935.1| histone family protein DNA-binding protein [Desulfurivibrio
alkaliphilus AHT2]
Length = 97
Score = 73.3 bits (179), Expect = 1e-11, Method: Composition-based stats.
Identities = 19/90 (21%), Positives = 46/90 (51%), Gaps = 1/90 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
+ L I +K + + +V+++ + + L +++ FG+F+VR+++ R
Sbjct: 7 TRKDLAKAINEKM-GFSQRSAADLVDIVFDRLKATLLAEEPIKLVQFGTFNVRRKSPRQG 65
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + + ++ + FR K+++ER+N
Sbjct: 66 RNPRTGDPMEISKRSMISFRPSKSVRERIN 95
>gi|114799727|ref|YP_761164.1| DNA-binding protein HU [Hyphomonas neptunium ATCC 15444]
gi|114739901|gb|ABI78026.1| DNA-binding protein HU [Hyphomonas neptunium ATCC 15444]
Length = 91
Score = 73.3 bits (179), Expect = 1e-11, Method: Composition-based stats.
Identities = 24/85 (28%), Positives = 42/85 (49%), Gaps = 1/85 (1%)
Query: 6 LIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLARAPL 65
L +++ + ++ + E +V+ ++ M L G ++ I G G VRK AR R P
Sbjct: 7 LAAELSEAH-EMPKKQAEAVVSDFIDRMGGHLKKGKKLRIAGLGILQVRKSPARKGRNPA 65
Query: 66 AQKVISVEEKMVPFFRAGKNLKERL 90
+ I ++ FR K+LKER+
Sbjct: 66 TGEEIKIKASKKVAFRPSKDLKERV 90
>gi|84503484|ref|ZP_01001539.1| DNA-binding protein HU, form N [Oceanicola batsensis HTCC2597]
gi|84388162|gb|EAQ01115.1| DNA-binding protein HU, form N [Oceanicola batsensis HTCC2597]
Length = 95
Score = 73.3 bits (179), Expect = 1e-11, Method: Composition-based stats.
Identities = 24/91 (26%), Positives = 42/91 (46%), Gaps = 1/91 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ L+ +A + + + ++ L +T+ ++ GG V I G G F R+R R+
Sbjct: 6 TKTQLVAALADEL-GSDKKTAGAALDALANVITKEVSGGGAVAIPGVGKFYCRERPERMV 64
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P + I E V K LK+ +N+
Sbjct: 65 RNPATNEQIKKEADRVVKVTIAKALKDSVNA 95
>gi|257451958|ref|ZP_05617257.1| histone-like DNA-binding protein [Fusobacterium sp. 3_1_5R]
gi|257467237|ref|ZP_05631548.1| histone-like DNA-binding protein [Fusobacterium gonidiaformans
ATCC 25563]
gi|315918366|ref|ZP_07914606.1| DNA-binding protein HU [Fusobacterium gonidiaformans ATCC 25563]
gi|317058507|ref|ZP_07922992.1| DNA-binding protein HU [Fusobacterium sp. 3_1_5R]
gi|313684183|gb|EFS21018.1| DNA-binding protein HU [Fusobacterium sp. 3_1_5R]
gi|313692241|gb|EFS29076.1| DNA-binding protein HU [Fusobacterium gonidiaformans ATCC 25563]
Length = 93
Score = 73.3 bits (179), Expect = 1e-11, Method: Composition-based stats.
Identities = 29/94 (30%), Positives = 50/94 (53%), Gaps = 1/94 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K + +AKK ++ ++ +K+V LE + ++L G V+ GFGS+ +KR AR
Sbjct: 1 MTKKEFVAALAKK-AEVTGKEADKMVKCFLELVEESLVAGNDVKFIGFGSWETKKREARK 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSPD 94
R P K + + K V F+ GK L +++ +
Sbjct: 60 LRNPQTGKEMKIAAKRVVKFKVGKALADKVAAKK 93
>gi|47459316|ref|YP_016178.1| nucleoid DNA-binding protein HU [Mycoplasma mobile 163K]
gi|47458646|gb|AAT27967.1| bacterial nucleoid DNA-binding protein HU [Mycoplasma mobile 163K]
Length = 108
Score = 73.3 bits (179), Expect = 1e-11, Method: Composition-based stats.
Identities = 30/91 (32%), Positives = 52/91 (57%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
+ K LI TIA+ N + ++VE+IVN LEE++ L ++ + FG F + +RAAR
Sbjct: 18 ITKKDLIATIAE-NQNKSKKEVEEIVNAFLEEISSELVADKKINLSSFGIFEISERAARS 76
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
P ++I ++ F+ K+LK+++N
Sbjct: 77 GINPKTSEIIQIKATKSVKFKVSKSLKDQVN 107
>gi|149369658|ref|ZP_01889510.1| DNA-binding protein HU [unidentified eubacterium SCB49]
gi|149357085|gb|EDM45640.1| DNA-binding protein HU [unidentified eubacterium SCB49]
Length = 96
Score = 73.3 bits (179), Expect = 1e-11, Method: Composition-based stats.
Identities = 25/93 (26%), Positives = 45/93 (48%), Gaps = 1/93 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ ++ I++K + DV+ V + E+ +L +G V +RGFGSF ++ RA +
Sbjct: 1 MTKADIVAKISEKL-GMEKGDVQATVETFMAEVKTSLESGDNVYLRGFGSFIIKTRAEKT 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSP 93
R I + +P F+ K E + +
Sbjct: 60 GRNISKNTTIKIPAHNIPAFKPAKVFVEGVKTN 92
>gi|148550580|ref|YP_001260019.1| histone family protein DNA-binding protein [Sphingomonas
wittichii RW1]
gi|148502999|gb|ABQ71252.1| histone family protein DNA-binding protein [Sphingomonas
wittichii RW1]
Length = 92
Score = 73.3 bits (179), Expect = 1e-11, Method: Composition-based stats.
Identities = 28/92 (30%), Positives = 39/92 (42%), Gaps = 1/92 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M S L +A D K V+++ + A A G V + GFG F V+ AR
Sbjct: 2 MNNSDLADHLAGAT-GATKADARKAVDLVFAAIADAAAKGEEVSLNGFGKFKVKDVLARE 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P + I + F K +K+RLNS
Sbjct: 61 GRNPATGETIKIAASKKLSFSVAKAVKDRLNS 92
>gi|228469565|ref|ZP_04054558.1| DNA-binding protein HU [Porphyromonas uenonis 60-3]
gi|228308915|gb|EEK17590.1| DNA-binding protein HU [Porphyromonas uenonis 60-3]
Length = 90
Score = 73.3 bits (179), Expect = 1e-11, Method: Composition-based stats.
Identities = 26/86 (30%), Positives = 44/86 (51%), Gaps = 1/86 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ I T+A K +L +D + + ++E + + + G R+ + GFGSF V +RAAR
Sbjct: 1 MNKTDFIKTVADK-AQLTQKDTKAVYEAIVETIHEEMKKGERLTLVGFGSFYVSQRAARK 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNL 86
P + K I ++ F+ L
Sbjct: 60 GINPRSGKTIDIKASKSIKFKPSTAL 85
>gi|307721611|ref|YP_003892751.1| histone family protein DNA-binding protein [Sulfurimonas
autotrophica DSM 16294]
gi|306979704|gb|ADN09739.1| histone family protein DNA-binding protein [Sulfurimonas
autotrophica DSM 16294]
Length = 94
Score = 73.3 bits (179), Expect = 1e-11, Method: Composition-based stats.
Identities = 26/90 (28%), Positives = 45/90 (50%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ + + + + E + E + +AL G V + GFGSF+ + +
Sbjct: 1 MNKAQFVELVQEHGNYKTKVEAENAIKAFTEAVIEALVKGEDVSLVGFGSFAAALQKGKT 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
+ P K + ++KMVP F+AGK LK+R+
Sbjct: 61 GKVPGTDKTYTTQDKMVPKFKAGKGLKDRV 90
>gi|167725689|ref|ZP_02408925.1| DNA-binding protein Hu-beta [Burkholderia pseudomallei DM98]
Length = 69
Score = 73.3 bits (179), Expect = 1e-11, Method: Composition-based stats.
Identities = 24/70 (34%), Positives = 36/70 (51%), Gaps = 1/70 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI +A K+ +L + V+ +L+ + L G V + GFG+F + RAAR
Sbjct: 1 MNKSQLIDAVA-KHAELTKAQAAQSVDAVLDAIRTGLLEDGDVALSGFGTFGISARAART 59
Query: 61 ARAPLAQKVI 70
R P + I
Sbjct: 60 GRNPATGEAI 69
>gi|163841555|ref|YP_001625960.1| DNA-binding protein HU [Renibacterium salmoninarum ATCC 33209]
gi|162955031|gb|ABY24546.1| DNA-binding protein HU [Renibacterium salmoninarum ATCC 33209]
Length = 107
Score = 73.3 bits (179), Expect = 1e-11, Method: Composition-based stats.
Identities = 20/85 (23%), Positives = 36/85 (42%), Gaps = 1/85 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
+S L+ +A K + + V +++ L ++A G ++ I G+ + RAAR
Sbjct: 4 NRSELVAEVAAK-AETSQAAVNNVLDALFSTFESSVAAGEKITIPGWLAVERTDRAARTG 62
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNL 86
R P + I + AG L
Sbjct: 63 RNPQTGETIQIAAGHSVKLTAGSKL 87
>gi|291320508|ref|YP_003515772.1| DNA binding histone like protein HU [Mycoplasma agalactiae]
gi|268326522|emb|CAL59247.1| DNA binding histone like protein HU [Mycoplasma agalactiae PG2]
gi|290752843|emb|CBH40818.1| DNA binding histone like protein HU [Mycoplasma agalactiae]
Length = 91
Score = 73.3 bits (179), Expect = 1e-11, Method: Composition-based stats.
Identities = 22/91 (24%), Positives = 40/91 (43%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K + IA K +++ + ++ + + + + L +V++ G F + R R
Sbjct: 1 MTKKEFVKAIANKM-EVSVKRADQFFDAFVFVLKEELIAESKVQLSSLGIFETKIRRGRD 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
P +SV EK V F K L+E +N
Sbjct: 60 TINPFTMSELSVPEKRVIKFTPSKYLRELVN 90
>gi|115524524|ref|YP_781435.1| histone family protein DNA-binding protein [Rhodopseudomonas
palustris BisA53]
gi|115518471|gb|ABJ06455.1| histone family protein DNA-binding protein [Rhodopseudomonas
palustris BisA53]
Length = 103
Score = 73.3 bits (179), Expect = 1e-11, Method: Composition-based stats.
Identities = 29/85 (34%), Positives = 47/85 (55%), Gaps = 1/85 (1%)
Query: 6 LIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLARAPL 65
L +A+ + +++ + E+I++ L+ +T+ L G R+ I G G VRKRAAR R P
Sbjct: 20 LAAALAEDH-EMSKKKSEEILSDLVGAITKHLKKGERIRIVGLGILQVRKRAARTGRNPA 78
Query: 66 AQKVISVEEKMVPFFRAGKNLKERL 90
+ I ++ FRA K LKE +
Sbjct: 79 TGEPIQIKASKKVAFRAAKELKEAV 103
>gi|256824922|ref|YP_003148882.1| nucleoid DNA-binding protein [Kytococcus sedentarius DSM 20547]
gi|256688315|gb|ACV06117.1| bacterial nucleoid DNA-binding protein [Kytococcus sedentarius DSM
20547]
Length = 106
Score = 73.3 bits (179), Expect = 1e-11, Method: Composition-based stats.
Identities = 27/100 (27%), Positives = 45/100 (45%), Gaps = 3/100 (3%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ L + + V++L++ M + +A GG V + GFG+F +RA R
Sbjct: 1 MNKADLARILEPIVGG--QGVASQCVDVLVDAMIREVAAGGTVTLTGFGTFERVERAPRT 58
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDSTLSNS 100
R P +V+ + P FR + + + STL S
Sbjct: 59 GRNPRTGEVVRIPGTAGPRFRPSPMFRGFV-ADPSTLPES 97
>gi|222108996|ref|YP_002551262.1| HNS-type DNA binding protein [Agrobacterium radiobacter K84]
gi|221727918|gb|ACM30968.1| HNS-type DNA binding protein [Agrobacterium radiobacter K84]
Length = 92
Score = 73.3 bits (179), Expect = 1e-11, Method: Composition-based stats.
Identities = 23/87 (26%), Positives = 34/87 (39%), Gaps = 1/87 (1%)
Query: 5 SLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLARAP 64
+ IA L + IV + +++T A G I FG F ++ AR R P
Sbjct: 6 EIADKIAADQ-NLTKAQAKTIVESVFKQITDAALAGAETSIPSFGKFKLKDTPAREGRNP 64
Query: 65 LAQKVISVEEKMVPFFRAGKNLKERLN 91
I + F GK +K+ LN
Sbjct: 65 ATGATIKIAASKKLTFAPGKAVKDALN 91
>gi|322387987|ref|ZP_08061594.1| DNA-binding protein HU [Streptococcus infantis ATCC 700779]
gi|322392079|ref|ZP_08065541.1| DNA-binding protein HU [Streptococcus peroris ATCC 700780]
gi|321141260|gb|EFX36758.1| DNA-binding protein HU [Streptococcus infantis ATCC 700779]
gi|321144979|gb|EFX40378.1| DNA-binding protein HU [Streptococcus peroris ATCC 700780]
Length = 91
Score = 73.3 bits (179), Expect = 1e-11, Method: Composition-based stats.
Identities = 35/90 (38%), Positives = 52/90 (57%), Gaps = 1/90 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K LI +A+ +L +D V+ + +T+ L+ G +V++ GFG+F VRKRAAR
Sbjct: 3 NKQDLIAKVAEAT-ELTKKDSAAAVDAVFAAVTEFLSAGEKVQLIGFGNFEVRKRAARKG 61
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P K I ++ VP F+AGK LKE +
Sbjct: 62 RNPQTGKEIKIKASKVPAFKAGKALKEAVK 91
>gi|39936018|ref|NP_948294.1| DNA-binding protein HU-alpha [Rhodopseudomonas palustris CGA009]
gi|192291674|ref|YP_001992279.1| histone family protein DNA-binding protein [Rhodopseudomonas
palustris TIE-1]
gi|316933828|ref|YP_004108810.1| histone family protein DNA-binding protein [Rhodopseudomonas
palustris DX-1]
gi|39649872|emb|CAE28394.1| possible DNA-binding protein hu-alpha (NS2) (HU-2)
[Rhodopseudomonas palustris CGA009]
gi|192285423|gb|ACF01804.1| histone family protein DNA-binding protein [Rhodopseudomonas
palustris TIE-1]
gi|315601542|gb|ADU44077.1| histone family protein DNA-binding protein [Rhodopseudomonas
palustris DX-1]
Length = 103
Score = 73.3 bits (179), Expect = 1e-11, Method: Composition-based stats.
Identities = 29/85 (34%), Positives = 47/85 (55%), Gaps = 1/85 (1%)
Query: 6 LIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLARAPL 65
L +A+++ +L+ + E I+ ++ +T+ L G R+ I G G VRKRAAR+ R P
Sbjct: 20 LAAALAEEH-ELSKKQTEAILGDMVTRITKHLKKGERIRIVGLGILQVRKRAARMGRNPA 78
Query: 66 AQKVISVEEKMVPFFRAGKNLKERL 90
+ I ++ FRA K LKE +
Sbjct: 79 TGEQIQIKASKKVAFRAAKELKEAI 103
>gi|15604046|ref|NP_220561.1| DNA-binding protein HU (hupA) [Rickettsia prowazekii str. Madrid E]
gi|3860737|emb|CAA14638.1| DNA-BINDING PROTEIN HU (hupA) [Rickettsia prowazekii]
gi|292571765|gb|ADE29680.1| DNA-binding protein HU [Rickettsia prowazekii Rp22]
Length = 110
Score = 73.3 bits (179), Expect = 1e-11, Method: Composition-based stats.
Identities = 29/99 (29%), Positives = 45/99 (45%), Gaps = 8/99 (8%)
Query: 1 MIKSSLIGTIAKKNPK--------LNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFS 52
M K+ I + + L D EK +N+++E + A+ + V + GFGSF
Sbjct: 12 MNKTEFIAFMTEHGHNNKHAAHKTLTKADAEKALNLVIESVISAIKSKHNVNLTGFGSFE 71
Query: 53 VRKRAARLARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
+ R R R P + ++ P FRAG+ LKE N
Sbjct: 72 IHHRKEREGRNPKTGAKMKIDAYNQPTFRAGRKLKEACN 110
>gi|332878124|ref|ZP_08445853.1| putative DNA-binding protein HU-alpha [Capnocytophaga sp. oral
taxon 329 str. F0087]
gi|332683862|gb|EGJ56730.1| putative DNA-binding protein HU-alpha [Capnocytophaga sp. oral
taxon 329 str. F0087]
Length = 96
Score = 72.9 bits (178), Expect = 1e-11, Method: Composition-based stats.
Identities = 24/93 (25%), Positives = 47/93 (50%), Gaps = 1/93 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ ++ I+ K+ L+ +V+ IV ++E+ +L +G V +RGFGSF ++ RA +
Sbjct: 1 MTKAEIVSKISDKS-GLDKNEVQLIVENFMDEVINSLKDGQNVYLRGFGSFIIKTRAEKT 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSP 93
R + + +P F+ K + +
Sbjct: 60 GRNISKNTTLKIPAHNIPAFKPAKVFVDTVKDN 92
>gi|260654666|ref|ZP_05860156.1| DNA-binding protein HU [Jonquetella anthropi E3_33 E1]
gi|260630682|gb|EEX48876.1| DNA-binding protein HU [Jonquetella anthropi E3_33 E1]
Length = 131
Score = 72.9 bits (178), Expect = 1e-11, Method: Composition-based stats.
Identities = 31/93 (33%), Positives = 55/93 (59%), Gaps = 2/93 (2%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ L+ + ++N +L D VN ++ ++ AL+ G +V++ GFG+F VR+R+AR
Sbjct: 22 TKTELVEFV-RENAQLKRSDAVAAVNAVVAGISGALSQGSKVQLVGFGTFEVRQRSARTG 80
Query: 62 RAPLAQ-KVISVEEKMVPFFRAGKNLKERLNSP 93
R P K + + K VP F+AGK L+ +++
Sbjct: 81 RNPQDPTKTVHIPAKKVPVFKAGKLLRSAVDTK 113
>gi|28868477|ref|NP_791096.1| DNA-binding protein HU family [Pseudomonas syringae pv. tomato
str. DC3000]
gi|71735134|ref|YP_273418.1| HU family DNA-binding protein [Pseudomonas syringae pv.
phaseolicola 1448A]
gi|213967075|ref|ZP_03395224.1| DNA-binding protein HU family [Pseudomonas syringae pv. tomato
T1]
gi|237799866|ref|ZP_04588327.1| HU family DNA-binding protein [Pseudomonas syringae pv. oryzae
str. 1_6]
gi|257487397|ref|ZP_05641438.1| HU family DNA-binding protein [Pseudomonas syringae pv. tabaci
ATCC 11528]
gi|289651134|ref|ZP_06482477.1| HU family DNA-binding protein [Pseudomonas syringae pv. aesculi
str. 2250]
gi|298485811|ref|ZP_07003890.1| DNA-binding protein HU, form N [Pseudomonas savastanoi pv.
savastanoi NCPPB 3335]
gi|301386379|ref|ZP_07234797.1| HU family DNA-binding protein [Pseudomonas syringae pv. tomato
Max13]
gi|302063942|ref|ZP_07255483.1| HU family DNA-binding protein [Pseudomonas syringae pv. tomato
K40]
gi|302133049|ref|ZP_07259039.1| HU family DNA-binding protein [Pseudomonas syringae pv. tomato
NCPPB 1108]
gi|302188392|ref|ZP_07265065.1| HU family DNA-binding protein [Pseudomonas syringae pv. syringae
642]
gi|28851715|gb|AAO54791.1| DNA-binding protein HU family [Pseudomonas syringae pv. tomato
str. DC3000]
gi|71555687|gb|AAZ34898.1| DNA-binding protein HU family [Pseudomonas syringae pv.
phaseolicola 1448A]
gi|213927917|gb|EEB61463.1| DNA-binding protein HU family [Pseudomonas syringae pv. tomato
T1]
gi|298159837|gb|EFI00879.1| DNA-binding protein HU, form N [Pseudomonas savastanoi pv.
savastanoi NCPPB 3335]
gi|320322895|gb|EFW78986.1| HU family DNA-binding protein [Pseudomonas syringae pv. glycinea
str. B076]
gi|320329796|gb|EFW85784.1| HU family DNA-binding protein [Pseudomonas syringae pv. glycinea
str. race 4]
gi|330873104|gb|EGH07253.1| HU family DNA-binding protein [Pseudomonas syringae pv.
morsprunorum str. M302280PT]
gi|330887716|gb|EGH20377.1| HU family DNA-binding protein [Pseudomonas syringae pv. mori str.
301020]
gi|330899524|gb|EGH30943.1| HU family DNA-binding protein [Pseudomonas syringae pv. japonica
str. M301072PT]
gi|330950952|gb|EGH51212.1| HU family DNA-binding protein [Pseudomonas syringae Cit 7]
gi|330975719|gb|EGH75785.1| HU family DNA-binding protein [Pseudomonas syringae pv. aptata
str. DSM 50252]
gi|331009010|gb|EGH89066.1| HU family DNA-binding protein [Pseudomonas syringae pv. tabaci
ATCC 11528]
gi|331015242|gb|EGH95298.1| HU family DNA-binding protein [Pseudomonas syringae pv.
lachrymans str. M302278PT]
gi|331022721|gb|EGI02778.1| HU family DNA-binding protein [Pseudomonas syringae pv. oryzae
str. 1_6]
Length = 93
Score = 72.9 bits (178), Expect = 1e-11, Method: Composition-based stats.
Identities = 24/91 (26%), Positives = 34/91 (37%), Gaps = 1/91 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K LI IA+ + L + + L NG + + G G V +R AR
Sbjct: 4 TKDQLIADIAEAI-DAPKTTARNALEQLGQIVADQLENGVEITLPGIGKLKVAERPARTG 62
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P I + K V F K L + +N
Sbjct: 63 RNPSTGAAIEIAAKKVIKFVPAKVLTDSINK 93
>gi|330995026|ref|ZP_08318945.1| DNA-binding protein HU-1 [Gluconacetobacter sp. SXCC-1]
gi|329757915|gb|EGG74440.1| DNA-binding protein HU-1 [Gluconacetobacter sp. SXCC-1]
Length = 91
Score = 72.9 bits (178), Expect = 1e-11, Method: Composition-based stats.
Identities = 29/91 (31%), Positives = 41/91 (45%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M + L+ IA + D K+++ L+E MT A G + + FG F VR+ AAR
Sbjct: 1 MKIADLVDHIATTTDT-SKTDTRKVLDALIEAMTAAAKAGDEITLPNFGKFKVREVAARE 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P I + F K LK+ LN
Sbjct: 60 GRNPATGATIQIAASRKLAFTPAKALKDSLN 90
>gi|49188573|ref|YP_025670.1| single-stranded binding protein [Pseudomonas syringae pv.
maculicola]
gi|47525156|gb|AAT35169.1| single-stranded binding protein [Pseudomonas syringae pv.
maculicola]
Length = 97
Score = 72.9 bits (178), Expect = 1e-11, Method: Composition-based stats.
Identities = 22/91 (24%), Positives = 35/91 (38%), Gaps = 1/91 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K L+ IA+ + L + + L +G + + G G V +R AR
Sbjct: 4 TKDQLVAGIAEAI-DAPKTTARNALEQLGQIVADQLESGAEITLPGIGKLKVAERPARTG 62
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P I + K V F + K L + +N
Sbjct: 63 RNPSTGASIDIAAKKVVKFVSAKVLNDAINK 93
>gi|283458729|ref|YP_003363367.1| nucleoid DNA-binding protein [Rothia mucilaginosa DY-18]
gi|283134782|dbj|BAI65547.1| bacterial nucleoid DNA-binding protein [Rothia mucilaginosa
DY-18]
Length = 95
Score = 72.9 bits (178), Expect = 1e-11, Method: Composition-based stats.
Identities = 17/82 (20%), Positives = 38/82 (46%), Gaps = 1/82 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
++ L+ +A+K+ K + V +++ + + +++ G ++ I G+ + RAAR
Sbjct: 4 NRTELVAEVAEKSGK-SQATVNAVLDAVFQVFESSVSKGEKITIPGWMAIERTDRAARTG 62
Query: 62 RAPLAQKVISVEEKMVPFFRAG 83
R P + I + AG
Sbjct: 63 RNPQTGETIQIPAGHGVKLTAG 84
>gi|108798891|ref|YP_639088.1| nucleoid protein Hbs [Mycobacterium sp. MCS]
gi|119868006|ref|YP_937958.1| nucleoid protein Hbs [Mycobacterium sp. KMS]
gi|126434491|ref|YP_001070182.1| nucleoid protein Hbs [Mycobacterium sp. JLS]
gi|108769310|gb|ABG08032.1| bacterial nucleoid protein Hbs [Mycobacterium sp. MCS]
gi|119694095|gb|ABL91168.1| bacterial nucleoid protein Hbs [Mycobacterium sp. KMS]
gi|126234291|gb|ABN97691.1| bacterial nucleoid protein Hbs [Mycobacterium sp. JLS]
Length = 225
Score = 72.9 bits (178), Expect = 1e-11, Method: Composition-based stats.
Identities = 29/90 (32%), Positives = 46/90 (51%), Gaps = 1/90 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI + K + + + V +++ + +A+ G V I GFG F R+RAAR+
Sbjct: 1 MNKAELIDALTTKM-GTDRRQATEAVENVVDTIVRAVHKGDSVTITGFGVFEQRRRAARV 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
AR P + + V+ VP FR G K +
Sbjct: 60 ARNPRTGETVKVKPTSVPAFRPGAQFKAIV 89
>gi|330962165|gb|EGH62425.1| HU family DNA-binding protein [Pseudomonas syringae pv.
maculicola str. ES4326]
Length = 93
Score = 72.9 bits (178), Expect = 1e-11, Method: Composition-based stats.
Identities = 24/91 (26%), Positives = 34/91 (37%), Gaps = 1/91 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K LI IA+ + L + + L NG + + G G V +R AR
Sbjct: 4 TKDQLIADIAEAI-DAPKTTARNALEQLGQIVADQLENGAEITLPGIGKLKVAERPARTG 62
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P I + K V F K L + +N
Sbjct: 63 RNPSTGAAIEIAAKKVIKFVPAKVLTDSINK 93
>gi|289627960|ref|ZP_06460914.1| HU family DNA-binding protein [Pseudomonas syringae pv. aesculi
str. NCPPB3681]
Length = 93
Score = 72.9 bits (178), Expect = 1e-11, Method: Composition-based stats.
Identities = 24/91 (26%), Positives = 34/91 (37%), Gaps = 1/91 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K LI IA+ + L + + L NG + + G G V +R AR
Sbjct: 4 TKDQLIADIAEAI-DAPKTTARNALEQLGQIVADQLENGVEITLPGIGKLKVAERPARTG 62
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P I + K V F K L + +N
Sbjct: 63 RNPSTGASIEIAAKKVIKFVPAKVLTDSINK 93
>gi|255038180|ref|YP_003088801.1| histone family protein DNA-binding protein [Dyadobacter
fermentans DSM 18053]
gi|254950936|gb|ACT95636.1| histone family protein DNA-binding protein [Dyadobacter
fermentans DSM 18053]
Length = 101
Score = 72.9 bits (178), Expect = 1e-11, Method: Composition-based stats.
Identities = 27/95 (28%), Positives = 51/95 (53%), Gaps = 1/95 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ +I I++K ++ DV++ + + +L++G + +RGFGSF +KRA ++
Sbjct: 1 MTKADVIAQISEKT-GVDKGDVQQTLESFFTVVKDSLSDGENLYVRGFGSFINKKRARKV 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDS 95
AR + ++E VP F+ K E++ D
Sbjct: 60 ARNISKGTSMIIDEHFVPSFKPAKVFVEQVKESDK 94
>gi|157803381|ref|YP_001491930.1| DNA-binding protein HU [Rickettsia canadensis str. McKiel]
gi|157784644|gb|ABV73145.1| DNA-binding protein HU [Rickettsia canadensis str. McKiel]
Length = 110
Score = 72.9 bits (178), Expect = 1e-11, Method: Composition-based stats.
Identities = 29/99 (29%), Positives = 45/99 (45%), Gaps = 8/99 (8%)
Query: 1 MIKSSLIGTI--------AKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFS 52
M K+ I + L D EK +N++L+ + A+ + + I GFGSF
Sbjct: 12 MNKTEFIAFMTNHGRNHKHASYKSLTKADAEKALNLVLDSVINAIKSHYNINITGFGSFE 71
Query: 53 VRKRAARLARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
+ R AR R P + ++ P FRAG+ +KE N
Sbjct: 72 IHHRKAREGRNPKTGAKMKIDAYNQPTFRAGRKMKEACN 110
>gi|292490832|ref|YP_003526271.1| histone family protein DNA-binding protein [Nitrosococcus
halophilus Nc4]
gi|291579427|gb|ADE13884.1| histone family protein DNA-binding protein [Nitrosococcus
halophilus Nc4]
Length = 109
Score = 72.9 bits (178), Expect = 1e-11, Method: Composition-based stats.
Identities = 24/79 (30%), Positives = 37/79 (46%), Gaps = 1/79 (1%)
Query: 4 SSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLARA 63
L G IAK+ + VE+I+ +++ L +G V + FG F + AR AR
Sbjct: 23 KELAGRIAKQT-GMTPDQVEEILAAFKKQVIADLTSGQEVRLSHFGKFYAKHMDAREARN 81
Query: 64 PLAQKVISVEEKMVPFFRA 82
P ++I V + FRA
Sbjct: 82 PRTGEIIQVPPRSYLRFRA 100
>gi|237737909|ref|ZP_04568390.1| DNA-binding protein HU [Fusobacterium mortiferum ATCC 9817]
gi|229419789|gb|EEO34836.1| DNA-binding protein HU [Fusobacterium mortiferum ATCC 9817]
Length = 106
Score = 72.9 bits (178), Expect = 1e-11, Method: Composition-based stats.
Identities = 28/91 (30%), Positives = 40/91 (43%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K + K + EK+ LE + + L G V GFG F KRA R
Sbjct: 1 MTKKEFVELFGAKAELKTKVEAEKLTKAFLETLEEVLVKGDSVAFIGFGKFEAAKRAERT 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
P +K + + + V F+ GKNL E++N
Sbjct: 61 CINPQTKKPMKIAARKVAKFKPGKNLLEKMN 91
>gi|159045828|ref|YP_001534622.1| DNA-binding protein HU [Dinoroseobacter shibae DFL 12]
gi|157913588|gb|ABV95021.1| DNA-binding protein HU [Dinoroseobacter shibae DFL 12]
Length = 96
Score = 72.9 bits (178), Expect = 1e-11, Method: Composition-based stats.
Identities = 22/90 (24%), Positives = 42/90 (46%), Gaps = 1/90 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ L+ +A+ +L+ + ++ L +T+ + +GG V + G G R+R R+
Sbjct: 7 TKTQLVAALAE-GAELDKKTAAATLDALTSIVTKEVTDGGAVTLPGIGKIYCRERPERMV 65
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + I + V K LK+ +N
Sbjct: 66 RNPATGEQIKKDADKVVKVTIAKALKDSVN 95
>gi|160871772|ref|ZP_02061904.1| integration host factor subunit alpha (IHF-alpha) [Rickettsiella
grylli]
gi|159120571|gb|EDP45909.1| integration host factor subunit alpha (IHF-alpha) [Rickettsiella
grylli]
Length = 102
Score = 72.9 bits (178), Expect = 1e-11, Method: Composition-based stats.
Identities = 23/82 (28%), Positives = 37/82 (45%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ LI ++ ++ L+ K+V+ E++ AL G V+I G G F R + R
Sbjct: 5 TKADLIHSLRQQESSLSRLVANKLVDAFFEQIMFALEQGESVKISGLGRFRRRLKKERPG 64
Query: 62 RAPLAQKVISVEEKMVPFFRAG 83
R P V + V F+A
Sbjct: 65 RNPQTGVTTQVSSRNVVLFQAS 86
>gi|299135036|ref|ZP_07028227.1| histone family protein DNA-binding protein [Afipia sp. 1NLS2]
gi|298590013|gb|EFI50217.1| histone family protein DNA-binding protein [Afipia sp. 1NLS2]
Length = 99
Score = 72.9 bits (178), Expect = 1e-11, Method: Composition-based stats.
Identities = 29/85 (34%), Positives = 48/85 (56%), Gaps = 1/85 (1%)
Query: 6 LIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLARAPL 65
L +A+++ +L+ + E I+ ++ ++T+ L G R+ I G G VRKRAAR+ R P
Sbjct: 16 LAAALAEEH-ELSKKTAEAILTDMVTKITKHLKKGERIRIVGLGILQVRKRAARMGRNPA 74
Query: 66 AQKVISVEEKMVPFFRAGKNLKERL 90
+ I ++ FRA K LKE +
Sbjct: 75 TGEAIHIKASKKVAFRAAKELKEAV 99
>gi|296115319|ref|ZP_06833958.1| putative DNA binding protein [Gluconacetobacter hansenii ATCC
23769]
gi|295978142|gb|EFG84881.1| putative DNA binding protein [Gluconacetobacter hansenii ATCC
23769]
Length = 91
Score = 72.9 bits (178), Expect = 1e-11, Method: Composition-based stats.
Identities = 27/91 (29%), Positives = 41/91 (45%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M + L+ IA + D K+++ L++ MT A G + + FG F V++ AAR
Sbjct: 1 MKIADLVDHIATTTDT-SKTDTRKVLDALIDTMTAAAKTGDEITLPNFGKFKVKEVAARE 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P I + F K LK+ LN
Sbjct: 60 GRNPATGATIQIAASRKLTFTPAKALKDSLN 90
>gi|299068805|emb|CBJ40046.1| DNA-binding protein HU-beta [Ralstonia solanacearum CMR15]
Length = 91
Score = 72.9 bits (178), Expect = 1e-11, Method: Composition-based stats.
Identities = 21/81 (25%), Positives = 34/81 (41%), Gaps = 1/81 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K LI +A + +++ E ++N L + + G + I G F +RAA+
Sbjct: 1 MNKQELIKHLAAQ-AEVSKGKAEDLLNALTTTVLDTVRAGNELTIPDLGKFGSVERAAKT 59
Query: 61 ARAPLAQKVISVEEKMVPFFR 81
R P I + K P F
Sbjct: 60 GRNPKTGSPIQIAAKRAPKFT 80
>gi|218778638|ref|YP_002429956.1| histone family protein DNA-binding protein [Desulfatibacillum
alkenivorans AK-01]
gi|218760022|gb|ACL02488.1| histone family protein DNA-binding protein [Desulfatibacillum
alkenivorans AK-01]
Length = 90
Score = 72.9 bits (178), Expect = 1e-11, Method: Composition-based stats.
Identities = 27/91 (29%), Positives = 42/91 (46%), Gaps = 2/91 (2%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGG-RVEIRGFGSFSVRKRAAR 59
M K LI +A K+ K+ + E + AL ++ + GFG+FS +R AR
Sbjct: 1 MTKPELIEKMA-KDAKITKAQAAAALKSFTEGVKMALKKKDGKLTLVGFGTFSKVRRKAR 59
Query: 60 LARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P + I ++ F+ GK LKE +
Sbjct: 60 KGRNPQTGEPIKIKASNAVKFKPGKALKESI 90
>gi|326798549|ref|YP_004316368.1| histone family protein DNA-binding protein [Sphingobacterium sp.
21]
gi|326549313|gb|ADZ77698.1| histone family protein DNA-binding protein [Sphingobacterium sp.
21]
Length = 94
Score = 72.9 bits (178), Expect = 2e-11, Method: Composition-based stats.
Identities = 31/95 (32%), Positives = 48/95 (50%), Gaps = 1/95 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ +I I+ K L DV++ V + + A+ G V +RGFGSF V+KRA +
Sbjct: 1 MTKAEIIAEISNKT-GLEKVDVQETVEAFFKVVKGAMVGGENVYVRGFGSFVVKKRAKKT 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDS 95
AR I + E VP F+ K E++ + +
Sbjct: 60 ARNISKNTAIIIPEHFVPSFKPAKVFVEKVKNGNK 94
>gi|326336370|ref|ZP_08202541.1| integration host factor subunit alpha [Capnocytophaga sp. oral
taxon 338 str. F0234]
gi|325691544|gb|EGD33512.1| integration host factor subunit alpha [Capnocytophaga sp. oral
taxon 338 str. F0234]
Length = 105
Score = 72.9 bits (178), Expect = 2e-11, Method: Composition-based stats.
Identities = 25/86 (29%), Positives = 43/86 (50%), Gaps = 1/86 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ ++ I++K + +V+ V +EE+ +L G V +RGFGSF V+ RA +
Sbjct: 1 MTKAEIVAKISEKL-GIEKTEVQNTVEHFMEEIKASLEKGDNVYLRGFGSFIVKARAEKT 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNL 86
R I++ +P F+ K
Sbjct: 60 GRNISKNTTITIPAHNIPAFKPAKVF 85
>gi|71900575|ref|ZP_00682702.1| Histone-like bacterial DNA-binding protein [Xylella fastidiosa
Ann-1]
gi|71729632|gb|EAO31736.1| Histone-like bacterial DNA-binding protein [Xylella fastidiosa
Ann-1]
Length = 69
Score = 72.9 bits (178), Expect = 2e-11, Method: Composition-based stats.
Identities = 23/67 (34%), Positives = 37/67 (55%), Gaps = 1/67 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI +A L+ + + ++ ++ E+T+AL G V + GFG+F VR RA R
Sbjct: 1 MNKTELIDGVAAA-ANLSKVEAGRAIDAVVNEITEALKKGDSVTLVGFGTFQVRPRAERP 59
Query: 61 ARAPLAQ 67
R P +
Sbjct: 60 GRNPKSG 66
>gi|317487172|ref|ZP_07945973.1| bacterial DNA-binding protein [Bilophila wadsworthia 3_1_6]
gi|316921573|gb|EFV42858.1| bacterial DNA-binding protein [Bilophila wadsworthia 3_1_6]
Length = 109
Score = 72.9 bits (178), Expect = 2e-11, Method: Composition-based stats.
Identities = 21/89 (23%), Positives = 45/89 (50%), Gaps = 1/89 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K L+ IA K +++ + E+++ +++ + + L V + G G+ +V + AARL
Sbjct: 6 TKKDLVQHIA-KALEVSPVEAERVMLVVMRYVRRQLLEDTSVILPGIGTLAVTETAARLG 64
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P + + + + + K+LKE +
Sbjct: 65 RNPHTGQPVPIPPRKTIKLKVSKDLKEAM 93
>gi|157825356|ref|YP_001493076.1| DNA-binding protein HU [Rickettsia akari str. Hartford]
gi|157799314|gb|ABV74568.1| DNA-binding protein HU [Rickettsia akari str. Hartford]
Length = 110
Score = 72.9 bits (178), Expect = 2e-11, Method: Composition-based stats.
Identities = 29/99 (29%), Positives = 46/99 (46%), Gaps = 8/99 (8%)
Query: 1 MIKSSLIGTI--------AKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFS 52
M K+ I + + L D EK +N++L+ + A+ + + I GFGSF
Sbjct: 12 MNKTEFIAFMTDHAHNHKHASHKTLTKADAEKALNLVLDSVISAIRSHYNINITGFGSFE 71
Query: 53 VRKRAARLARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
+ R AR R P + ++ P FRAG+ +KE N
Sbjct: 72 IHHRKAREGRNPKTGAKMKIDAYNQPTFRAGRKMKEACN 110
>gi|313886631|ref|ZP_07820343.1| DNA-binding protein HU [Porphyromonas asaccharolytica
PR426713P-I]
gi|332299532|ref|YP_004441453.1| histone family protein DNA-binding protein [Porphyromonas
asaccharolytica DSM 20707]
gi|312923927|gb|EFR34724.1| DNA-binding protein HU [Porphyromonas asaccharolytica
PR426713P-I]
gi|332176595|gb|AEE12285.1| histone family protein DNA-binding protein [Porphyromonas
asaccharolytica DSM 20707]
Length = 91
Score = 72.5 bits (177), Expect = 2e-11, Method: Composition-based stats.
Identities = 27/94 (28%), Positives = 46/94 (48%), Gaps = 3/94 (3%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ I T+A K +L +D + + ++E + + + G R+ + GFGSF V +RAAR
Sbjct: 1 MNKTDFIKTVADK-AQLTQKDTKAVYEAMVETIHEEMKKGERLTLVGFGSFYVSERAARK 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSPD 94
P + K I ++ F+ L +N
Sbjct: 60 GINPQSGKTIQIKASKSIKFKPSTAL--DINKKK 91
>gi|224170258|ref|XP_002192729.1| PREDICTED: similar to DNA-binding protein hu homolog, partial
[Taeniopygia guttata]
Length = 90
Score = 72.5 bits (177), Expect = 2e-11, Method: Composition-based stats.
Identities = 26/90 (28%), Positives = 44/90 (48%), Gaps = 1/90 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ ++ IA K + V +V L+ + +LA+G V +RGFGSF V++R +
Sbjct: 1 MTKAEIVTEIA-KTTGIEKASVLAVVEGLMTSIKDSLAHGENVYLRGFGSFIVKERKEKT 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
AR I + +P F+ K+ +
Sbjct: 60 ARNISKNTTIIIPAHNIPAFKPAAEFKKVV 89
>gi|254434179|ref|ZP_05047687.1| DNA-binding protein HU [Nitrosococcus oceani AFC27]
gi|207090512|gb|EDZ67783.1| DNA-binding protein HU [Nitrosococcus oceani AFC27]
Length = 119
Score = 72.5 bits (177), Expect = 2e-11, Method: Composition-based stats.
Identities = 22/79 (27%), Positives = 37/79 (46%), Gaps = 1/79 (1%)
Query: 4 SSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLARA 63
L G IAK+ + +E+++ +++ LA+G V + FG F + AR AR
Sbjct: 33 KELAGRIAKQT-GMAPDQIEEVLVAFKKQIIADLASGQEVRLSHFGKFYAKHMNAREARN 91
Query: 64 PLAQKVISVEEKMVPFFRA 82
P + I V + F+A
Sbjct: 92 PRTGEAIQVPPRSYLRFKA 110
>gi|167763121|ref|ZP_02435248.1| hypothetical protein BACSTE_01490 [Bacteroides stercoris ATCC
43183]
gi|167699461|gb|EDS16040.1| hypothetical protein BACSTE_01490 [Bacteroides stercoris ATCC
43183]
Length = 376
Score = 72.5 bits (177), Expect = 2e-11, Method: Composition-based stats.
Identities = 18/90 (20%), Positives = 40/90 (44%), Gaps = 1/90 (1%)
Query: 4 SSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLARA 63
LI +A+K+ ++ ++ + V + + +AL V+I+G G+F + +R +
Sbjct: 8 QDLIDLLAEKH-GMSKKNADSFVKEFFQLIEEALEKDKYVKIKGLGAFKLIDVESRESVN 66
Query: 64 PLAQKVISVEEKMVPFFRAGKNLKERLNSP 93
+ ++ F LK+ +N P
Sbjct: 67 VNTGERFEIQGHTKVSFTPEPALKDIINKP 96
>gi|226358227|ref|YP_002787966.1| DNA-binding protein HU (Histone-like protein) [Deinococcus deserti
VCD115]
gi|226319870|gb|ACO47864.1| putative DNA-binding protein HU (Histone-like protein) [Deinococcus
deserti VCD115]
Length = 125
Score = 72.5 bits (177), Expect = 2e-11, Method: Composition-based stats.
Identities = 24/85 (28%), Positives = 40/85 (47%), Gaps = 1/85 (1%)
Query: 3 KSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLAR 62
K+ L+ +A + L + E+ V+ +LE + AL G V + G G+ SV++ AAR
Sbjct: 39 KTQLVEMVADRT-GLTKKQSEEAVSTMLESIVGALREGKSVGMPGLGTLSVKQTAARTGV 97
Query: 63 APLAQKVISVEEKMVPFFRAGKNLK 87
P + I + F+ LK
Sbjct: 98 RPGTSEKIQIPAGKKVAFKVASTLK 122
>gi|67459500|ref|YP_247124.1| DNA-binding protein HU [Rickettsia felis URRWXCal2]
gi|239946853|ref|ZP_04698606.1| DNA-binding protein HU [Rickettsia endosymbiont of Ixodes
scapularis]
gi|67005033|gb|AAY61959.1| DNA-binding protein HU [Rickettsia felis URRWXCal2]
gi|239921129|gb|EER21153.1| DNA-binding protein HU [Rickettsia endosymbiont of Ixodes
scapularis]
Length = 110
Score = 72.5 bits (177), Expect = 2e-11, Method: Composition-based stats.
Identities = 29/99 (29%), Positives = 46/99 (46%), Gaps = 8/99 (8%)
Query: 1 MIKSSLIGTI--------AKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFS 52
M K+ I + + L D EK +N++L+ + A+ + + I GFGSF
Sbjct: 12 MNKTEFIAFMTDHGHNHKHASHKTLTKADAEKALNLVLDSVISAIKSHHNINITGFGSFE 71
Query: 53 VRKRAARLARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
+ R AR R P + ++ P FRAG+ +KE N
Sbjct: 72 IHHRKAREGRNPKTGAKMKIDAYNQPTFRAGRKMKEACN 110
>gi|332882318|ref|ZP_08449946.1| DNA-binding protein HRL53 [Capnocytophaga sp. oral taxon 329 str.
F0087]
gi|332679702|gb|EGJ52671.1| DNA-binding protein HRL53 [Capnocytophaga sp. oral taxon 329 str.
F0087]
Length = 106
Score = 72.5 bits (177), Expect = 2e-11, Method: Composition-based stats.
Identities = 29/94 (30%), Positives = 45/94 (47%), Gaps = 1/94 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K L +A+K L + +K N ++E + + GR+ + GFGSFSV+++AAR
Sbjct: 1 MNKKELCNALAEKT-GLTKTEAQKAFNAVIEIVANEMKKNGRITLIGFGSFSVKQKAARK 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSPD 94
P + I + K V F+ L LN
Sbjct: 60 GMNPTSFAPIDIPAKKVVNFKPSIYLNHLLNVKK 93
>gi|15828558|ref|NP_325918.1| DNA-binding protein HU [Mycoplasma pulmonis UAB CTIP]
gi|14089500|emb|CAC13260.1| DNA-BINDING PROTEIN HU [Mycoplasma pulmonis]
Length = 126
Score = 72.5 bits (177), Expect = 2e-11, Method: Composition-based stats.
Identities = 25/91 (27%), Positives = 48/91 (52%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K + I++ + ++ +DVE I+N ++ + ++L + +V I G+F + +AAR
Sbjct: 36 MTKKEFMQKISE-HSFISQRDVEAIINSMVFVIKESLISEEKVTIPMLGTFETKIKAARE 94
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
+ I + EK V F+ K +KE +N
Sbjct: 95 GIKFTTGEKILIPEKRVVKFKPTKYIKEVVN 125
>gi|222101973|ref|YP_002546563.1| integration host factor alpha-subunit protein [Agrobacterium
radiobacter K84]
gi|221728090|gb|ACM31099.1| integration host factor alpha-subunit protein [Agrobacterium
radiobacter K84]
Length = 117
Score = 72.5 bits (177), Expect = 2e-11, Method: Composition-based stats.
Identities = 21/89 (23%), Positives = 45/89 (50%), Gaps = 1/89 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
++ + +I + L+ + ++V+ +LEE+ AL G V + F +F+VR+++ R
Sbjct: 7 TRADITHSI-IRQIGLSRTESAELVDTILEEICSALIRGENVGLSSFAAFNVREKSRRPG 65
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P + + + V F A +K ++
Sbjct: 66 RNPKTGEDYQIAARRVISFTASDAVKTQI 94
>gi|329889861|ref|ZP_08268204.1| DNA-binding protein HU 1 [Brevundimonas diminuta ATCC 11568]
gi|328845162|gb|EGF94726.1| DNA-binding protein HU 1 [Brevundimonas diminuta ATCC 11568]
Length = 91
Score = 72.5 bits (177), Expect = 2e-11, Method: Composition-based stats.
Identities = 27/91 (29%), Positives = 41/91 (45%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M S L IA ++ + D KIV+ + + A A G + + GFG F V+ AR
Sbjct: 1 MNNSDLADKIAAEH-GTSKADARKIVDAVFAAIADAAAGGSEIALNGFGKFKVKDSPARE 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + I + F K +K++LN
Sbjct: 60 GRNPATGETIKIAASKKLTFSPAKAVKDKLN 90
>gi|75676083|ref|YP_318504.1| histone-like DNA-binding protein [Nitrobacter winogradskyi
Nb-255]
gi|74420953|gb|ABA05152.1| Histone-like DNA-binding protein [Nitrobacter winogradskyi
Nb-255]
Length = 99
Score = 72.5 bits (177), Expect = 2e-11, Method: Composition-based stats.
Identities = 29/85 (34%), Positives = 46/85 (54%), Gaps = 1/85 (1%)
Query: 6 LIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLARAPL 65
L +A+ + +L+ + E I++ ++ +T+ L G R+ I G G VRKRAAR R P
Sbjct: 16 LAAALAEDH-ELSKKAAEAILSDMVTRITKHLKKGDRIRIVGLGILQVRKRAARKGRNPA 74
Query: 66 AQKVISVEEKMVPFFRAGKNLKERL 90
+ I ++ FRA K LKE +
Sbjct: 75 TGEEIQIKASKKVAFRAAKELKEAI 99
>gi|312977270|ref|ZP_07789018.1| DNA-binding protein HU [Lactobacillus crispatus CTV-05]
gi|310895701|gb|EFQ44767.1| DNA-binding protein HU [Lactobacillus crispatus CTV-05]
Length = 59
Score = 72.5 bits (177), Expect = 2e-11, Method: Composition-based stats.
Identities = 25/59 (42%), Positives = 34/59 (57%)
Query: 33 MTQALANGGRVEIRGFGSFSVRKRAARLARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
M + LA G +V++ GFG+F VR RAAR R P I + VP F+ GK LK+ +
Sbjct: 1 MQENLAKGFKVQLIGFGTFEVRHRAARKGRNPQTGDEIEIPASEVPAFKPGKALKDAVK 59
>gi|270296683|ref|ZP_06202882.1| conserved hypothetical protein [Bacteroides sp. D20]
gi|270272670|gb|EFA18533.1| conserved hypothetical protein [Bacteroides sp. D20]
Length = 393
Score = 72.5 bits (177), Expect = 2e-11, Method: Composition-based stats.
Identities = 18/90 (20%), Positives = 41/90 (45%), Gaps = 1/90 (1%)
Query: 4 SSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLARA 63
LI T+A+++ ++ ++ + V + + ++L V+IRG G+F + +R +
Sbjct: 8 QDLIDTLAERH-GMSKKNADSFVKEFFQLIEESLEKDKYVKIRGLGTFKLIDVGSRESVN 66
Query: 64 PLAQKVISVEEKMVPFFRAGKNLKERLNSP 93
+ ++ F LK+ +N P
Sbjct: 67 VNTGERFEIQGHTKVSFTPEPALKDIINRP 96
>gi|34580834|ref|ZP_00142314.1| DNA-binding protein HU [Rickettsia sibirica 246]
gi|157828089|ref|YP_001494331.1| DNA-binding protein HU [Rickettsia rickettsii str. 'Sheila Smith']
gi|238651025|ref|YP_002916882.1| DNA-binding protein HU [Rickettsia peacockii str. Rustic]
gi|28262219|gb|EAA25723.1| DNA-binding protein HU [Rickettsia sibirica 246]
gi|157800570|gb|ABV75823.1| DNA-binding protein HU [Rickettsia rickettsii str. 'Sheila Smith']
gi|238625123|gb|ACR47829.1| DNA-binding protein HU [Rickettsia peacockii str. Rustic]
Length = 110
Score = 72.5 bits (177), Expect = 2e-11, Method: Composition-based stats.
Identities = 28/99 (28%), Positives = 46/99 (46%), Gaps = 8/99 (8%)
Query: 1 MIKSSLIGTI--------AKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFS 52
M K+ I + + L + EK +N++L+ + A+ + + I GFGSF
Sbjct: 12 MNKTEFIAFMTDHGHNHKHASHKTLTKAEAEKALNLVLDSVISAIKSHHNINITGFGSFE 71
Query: 53 VRKRAARLARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
+ R AR R P + ++ P FRAG+ +KE N
Sbjct: 72 IHHRKAREGRNPKTGAKMKIDAYNQPTFRAGRKMKEACN 110
>gi|329963577|ref|ZP_08301056.1| LysM domain protein [Bacteroides fluxus YIT 12057]
gi|328528566|gb|EGF55537.1| LysM domain protein [Bacteroides fluxus YIT 12057]
Length = 379
Score = 72.5 bits (177), Expect = 2e-11, Method: Composition-based stats.
Identities = 20/90 (22%), Positives = 41/90 (45%), Gaps = 1/90 (1%)
Query: 4 SSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLARA 63
LI +A+K+ ++ +D + V + ++L V+I+G G+F + +R +
Sbjct: 8 QDLIDLLAEKH-GMSKKDADSFVKEFFLLVEESLEKDKYVKIKGLGTFKLIDVESRESVN 66
Query: 64 PLAQKVISVEEKMVPFFRAGKNLKERLNSP 93
+ I ++ F +LKE +N P
Sbjct: 67 VNTGERIEIQGHTKVTFTPEPSLKEVINRP 96
>gi|317480051|ref|ZP_07939163.1| bacterial DNA-binding protein [Bacteroides sp. 4_1_36]
gi|316903793|gb|EFV25635.1| bacterial DNA-binding protein [Bacteroides sp. 4_1_36]
Length = 393
Score = 72.5 bits (177), Expect = 2e-11, Method: Composition-based stats.
Identities = 18/90 (20%), Positives = 41/90 (45%), Gaps = 1/90 (1%)
Query: 4 SSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLARA 63
LI T+A+++ ++ ++ + V + + ++L V+IRG G+F + +R +
Sbjct: 8 QDLIDTLAERH-GMSKKNADSFVKEFFQLIEESLEKDKYVKIRGLGTFKLIDVGSRESVN 66
Query: 64 PLAQKVISVEEKMVPFFRAGKNLKERLNSP 93
+ ++ F LK+ +N P
Sbjct: 67 VNTGERFEIQGHTKVSFTPEPALKDIINRP 96
>gi|256379997|ref|YP_003103657.1| histone family protein DNA-binding protein [Actinosynnema mirum
DSM 43827]
gi|255924300|gb|ACU39811.1| histone family protein DNA-binding protein [Actinosynnema mirum
DSM 43827]
Length = 285
Score = 72.5 bits (177), Expect = 2e-11, Method: Composition-based stats.
Identities = 29/90 (32%), Positives = 50/90 (55%), Gaps = 2/90 (2%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI +A++ ++ V+ +++ + +++ G +V I GFG F R RAAR
Sbjct: 1 MNKAQLIEALAERLGD--KKNAAAAVDGIVDVIVRSVHKGEKVNITGFGVFEKRARAART 58
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
AR P + + V++ VP FRAG K+ +
Sbjct: 59 ARNPRTGETVKVKKTNVPAFRAGSTFKDVI 88
>gi|331703408|ref|YP_004400095.1| DNA binding protein HU [Mycoplasma mycoides subsp. capri LC str.
95010]
gi|256383641|gb|ACU78211.1| DNA-binding protein HU [Mycoplasma mycoides subsp. capri str.
GM12]
gi|256384472|gb|ACU79041.1| DNA-binding protein HU [Mycoplasma mycoides subsp. capri str.
GM12]
gi|296455617|gb|ADH21852.1| DNA-binding protein HU [synthetic Mycoplasma mycoides
JCVI-syn1.0]
gi|328801963|emb|CBW54117.1| DNA binding protein HU [Mycoplasma mycoides subsp. capri LC str.
95010]
Length = 90
Score = 72.5 bits (177), Expect = 2e-11, Method: Composition-based stats.
Identities = 28/90 (31%), Positives = 44/90 (48%), Gaps = 1/90 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K LI N ++ D EK+VN + + +++ L +G V + GFG F + +RA+R
Sbjct: 1 MTKKELIEE-IIINENISKVDAEKVVNRIFQTISKHLIDGKEVSVAGFGKFVISERASRE 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
P + I + F+ K LKE L
Sbjct: 60 GVNPSTGEKIVIPASRSARFKPAKQLKESL 89
>gi|226329063|ref|ZP_03804581.1| hypothetical protein PROPEN_02966 [Proteus penneri ATCC 35198]
gi|225202249|gb|EEG84603.1| hypothetical protein PROPEN_02966 [Proteus penneri ATCC 35198]
Length = 66
Score = 72.5 bits (177), Expect = 2e-11, Method: Composition-based stats.
Identities = 27/55 (49%), Positives = 33/55 (60%)
Query: 38 ANGGRVEIRGFGSFSVRKRAARLARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
G V + GFG+F+VR RAAR R P K I +E VP FRAGK LK+ +N
Sbjct: 12 KKGDDVALVGFGTFTVRDRAARTGRNPQTGKEIQIEAAKVPAFRAGKGLKDAVNQ 66
>gi|330811521|ref|YP_004355983.1| DNA-binding protein [Pseudomonas brassicacearum subsp.
brassicacearum NFM421]
gi|327379629|gb|AEA70979.1| putative DNA-binding protein [Pseudomonas brassicacearum subsp.
brassicacearum NFM421]
Length = 93
Score = 72.5 bits (177), Expect = 2e-11, Method: Composition-based stats.
Identities = 24/91 (26%), Positives = 38/91 (41%), Gaps = 1/91 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K LI +A+ + V +++ L + + L NGG + + G G V +R AR
Sbjct: 4 TKDQLIADLAE-SVDAPKATVRSLLDQLGQVVADQLENGGEITLPGVGKLKVTERPARTG 62
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P I + K V K L + +N
Sbjct: 63 RNPSTGAAIEIAAKKVIKLVVAKGLTDAVNK 93
>gi|262067818|ref|ZP_06027430.1| DNA-binding protein HU [Fusobacterium periodonticum ATCC 33693]
gi|291378542|gb|EFE86060.1| DNA-binding protein HU [Fusobacterium periodonticum ATCC 33693]
Length = 90
Score = 72.5 bits (177), Expect = 2e-11, Method: Composition-based stats.
Identities = 23/91 (25%), Positives = 43/91 (47%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M+K L+ +++K + + EK ++ L E +T+ L G + G+F V+ RA +
Sbjct: 1 MLKKELLNVLSEKL-GIKKIETEKFLDTLEEVITEELKKGEDFNLGKLGTFKVKDRAEKN 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
P + I + + F+A KNL +
Sbjct: 60 GVNPKTGEKIVIPARKAVTFKASKNLSTLIK 90
>gi|160889559|ref|ZP_02070562.1| hypothetical protein BACUNI_01983 [Bacteroides uniformis ATCC
8492]
gi|156861076|gb|EDO54507.1| hypothetical protein BACUNI_01983 [Bacteroides uniformis ATCC
8492]
Length = 404
Score = 72.5 bits (177), Expect = 2e-11, Method: Composition-based stats.
Identities = 18/90 (20%), Positives = 41/90 (45%), Gaps = 1/90 (1%)
Query: 4 SSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLARA 63
LI T+A+++ ++ ++ + V + + ++L V+IRG G+F + +R +
Sbjct: 8 QDLIDTLAERH-GMSKKNADSFVKEFFQLIEESLEKDKYVKIRGLGTFKLIDVGSRESVN 66
Query: 64 PLAQKVISVEEKMVPFFRAGKNLKERLNSP 93
+ ++ F LK+ +N P
Sbjct: 67 VNTGERFEIQGHTKVSFTPEPALKDIINRP 96
>gi|300743697|ref|ZP_07072717.1| DNA-binding protein HU [Rothia dentocariosa M567]
gi|311112948|ref|YP_003984170.1| DNA-binding protein HU [Rothia dentocariosa ATCC 17931]
gi|300380058|gb|EFJ76621.1| DNA-binding protein HU [Rothia dentocariosa M567]
gi|310944442|gb|ADP40736.1| DNA-binding protein HU [Rothia dentocariosa ATCC 17931]
Length = 106
Score = 72.5 bits (177), Expect = 2e-11, Method: Composition-based stats.
Identities = 17/82 (20%), Positives = 38/82 (46%), Gaps = 1/82 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
++ L+ +A+K+ K + V +++ + + +++ G ++ I G+ + RAAR
Sbjct: 4 NRTELVAEVAEKSGK-SQATVNAVLDAVFQAFETSVSKGEKITIPGWLAIERTDRAARTG 62
Query: 62 RAPLAQKVISVEEKMVPFFRAG 83
R P + I + AG
Sbjct: 63 RNPQTGETIQIPAGHGVKLTAG 84
>gi|330969241|gb|EGH69307.1| HU family DNA-binding protein [Pseudomonas syringae pv. aceris
str. M302273PT]
Length = 93
Score = 72.5 bits (177), Expect = 2e-11, Method: Composition-based stats.
Identities = 24/91 (26%), Positives = 36/91 (39%), Gaps = 1/91 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K LI IA+ + + + L + + L NG + + G G V +R AR
Sbjct: 4 TKDQLIADIAE-SIEAPKTTARNALEQLGQIVADQLENGVEITLPGIGKLKVAERPARTG 62
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P I + K V F K L + +N
Sbjct: 63 RNPSTGAAIEIAAKKVIKFVPAKVLTDSINK 93
>gi|332664549|ref|YP_004447337.1| histone family protein DNA-binding protein [Haliscomenobacter
hydrossis DSM 1100]
gi|332333363|gb|AEE50464.1| histone family protein DNA-binding protein [Haliscomenobacter
hydrossis DSM 1100]
Length = 108
Score = 72.5 bits (177), Expect = 2e-11, Method: Composition-based stats.
Identities = 29/99 (29%), Positives = 51/99 (51%), Gaps = 1/99 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ L+ I++K + DV + +E+ +LA+G V IRGFGSF +++RA ++
Sbjct: 1 MRKADLVAAISEKT-GVPKVDVLVTLETFFKEVKGSLADGENVYIRGFGSFVIKRRAKKI 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDSTLSN 99
R I + E +P F+ K E++ + +L
Sbjct: 60 GRHIKKNVAIEIPEHFIPSFKPAKIFVEQVKANVDSLPK 98
>gi|119962186|ref|YP_949429.1| DNA-binding protein HU [Arthrobacter aurescens TC1]
gi|119949045|gb|ABM07956.1| DNA-binding protein HU [Arthrobacter aurescens TC1]
Length = 95
Score = 72.1 bits (176), Expect = 2e-11, Method: Composition-based stats.
Identities = 20/82 (24%), Positives = 35/82 (42%), Gaps = 1/82 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
+S L+ +A K + V +++ L E ++A G ++ I G+ + RAAR
Sbjct: 4 NRSELVAEVAGK-AGTSQAAVNSVLDALFEVFETSVAAGEKITIPGWLAVERTDRAARTG 62
Query: 62 RAPLAQKVISVEEKMVPFFRAG 83
R P + I + AG
Sbjct: 63 RNPQTGETIQIAAGHSVKLTAG 84
>gi|66044337|ref|YP_234178.1| histone-like DNA-binding protein [Pseudomonas syringae pv.
syringae B728a]
gi|63255044|gb|AAY36140.1| Histone-like bacterial DNA-binding protein [Pseudomonas syringae
pv. syringae B728a]
Length = 93
Score = 72.1 bits (176), Expect = 2e-11, Method: Composition-based stats.
Identities = 22/91 (24%), Positives = 31/91 (34%), Gaps = 1/91 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K LI IA+ + L + L G + + G V +R AR
Sbjct: 4 TKDQLIADIAEAI-DAPKTTARSALEQLGHIVADQLEKGVEITLPNIGKLKVAERPARTG 62
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P I + K V F K L + +N
Sbjct: 63 RNPSTGAAIEIAAKKVIKFVPAKVLTDSINK 93
>gi|332298535|ref|YP_004440457.1| histone family protein DNA-binding protein [Treponema
brennaborense DSM 12168]
gi|332181638|gb|AEE17326.1| histone family protein DNA-binding protein [Treponema
brennaborense DSM 12168]
Length = 101
Score = 72.1 bits (176), Expect = 2e-11, Method: Composition-based stats.
Identities = 30/90 (33%), Positives = 50/90 (55%), Gaps = 2/90 (2%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL- 60
K LI ++ +N K + V+++ LL+++ ++L +G +E+RGFG+F R R R
Sbjct: 5 TKYDLIESVY-QNTKCEKRVVQEVFESLLDQIKESLKSGATIELRGFGTFEPRLRKGRKK 63
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
AR P +SV + FR+G+ LK L
Sbjct: 64 ARNPKTGDHLSVPPHYIAAFRSGQELKNAL 93
>gi|229588591|ref|YP_002870710.1| putative DNA-binding protein [Pseudomonas fluorescens SBW25]
gi|269864503|ref|XP_002651596.1| DNA-binding protein HU [Enterocytozoon bieneusi H348]
gi|220064232|gb|EED42460.1| DNA-binding protein HU [Enterocytozoon bieneusi H348]
gi|229360457|emb|CAY47314.1| putative DNA-binding protein [Pseudomonas fluorescens SBW25]
Length = 93
Score = 72.1 bits (176), Expect = 2e-11, Method: Composition-based stats.
Identities = 24/92 (26%), Positives = 38/92 (41%), Gaps = 1/92 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
+ K LI +A+ V +++ L + + L NGG + + G G V +R AR
Sbjct: 3 ITKDQLIADLAEA-VDAPKTTVRALLDQLSQVVADQLENGGEITLPGVGKLKVTERPART 61
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P I + K V K L + +N
Sbjct: 62 GRNPSTGAAIEIAAKKVIKLVVAKGLTDAVNK 93
>gi|253582110|ref|ZP_04859334.1| predicted protein [Fusobacterium varium ATCC 27725]
gi|251836459|gb|EES64996.1| predicted protein [Fusobacterium varium ATCC 27725]
Length = 111
Score = 72.1 bits (176), Expect = 2e-11, Method: Composition-based stats.
Identities = 30/91 (32%), Positives = 43/91 (47%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K + K + +K+ ++ + + L G V GFG F +RAAR
Sbjct: 6 MTKKEFVELFGTKAGIKTKVEADKLTKAFIDTLEEILVKGENVSFIGFGKFEAAERAART 65
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
P +K + VE K V FRAGKNL E++N
Sbjct: 66 CVNPQTKKPMKVEAKKVAKFRAGKNLLEKMN 96
>gi|126739059|ref|ZP_01754753.1| DNA-binding protein HU [Roseobacter sp. SK209-2-6]
gi|126719676|gb|EBA16384.1| DNA-binding protein HU [Roseobacter sp. SK209-2-6]
Length = 94
Score = 72.1 bits (176), Expect = 2e-11, Method: Composition-based stats.
Identities = 26/87 (29%), Positives = 43/87 (49%), Gaps = 1/87 (1%)
Query: 6 LIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLARAPL 65
LI IA++ + + + V+ +++ L E++ +A G I G G F +RAAR R P
Sbjct: 9 LIRAIAEETSQ-SQEAVKAVLSALTEQIIKAAEGGSDTTIPGLGVFKRSERAARKGRNPS 67
Query: 66 AQKVISVEEKMVPFFRAGKNLKERLNS 92
I + F+ K K+RLN+
Sbjct: 68 TGVEIEIAASSSLSFKPAKAAKDRLNA 94
>gi|313676682|ref|YP_004054678.1| histone family protein DNA-binding protein [Marivirga tractuosa
DSM 4126]
gi|312943380|gb|ADR22570.1| histone family protein DNA-binding protein [Marivirga tractuosa
DSM 4126]
Length = 99
Score = 72.1 bits (176), Expect = 2e-11, Method: Composition-based stats.
Identities = 29/95 (30%), Positives = 50/95 (52%), Gaps = 1/95 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ +I I++K ++ DV V + ++A+G + +RGFGSF +KRA ++
Sbjct: 1 MTKADVISEISEKT-GIDKADVTATVEAFFSVVKDSMADGENIYVRGFGSFVNKKRAKKI 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDS 95
AR I ++E VP F+ K E++ S +
Sbjct: 60 ARNISKNTAIVIDEHYVPSFKPSKVFVEKIKSSNK 94
>gi|294676551|ref|YP_003577166.1| DNA-binding protein HU [Rhodobacter capsulatus SB 1003]
gi|294475371|gb|ADE84759.1| DNA-binding protein HU-2 [Rhodobacter capsulatus SB 1003]
Length = 91
Score = 72.1 bits (176), Expect = 2e-11, Method: Composition-based stats.
Identities = 21/82 (25%), Positives = 39/82 (47%), Gaps = 1/82 (1%)
Query: 3 KSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLAR 62
KS L+ +A + +V+ +++ L +T G +V + GFGSF R++ AR+ R
Sbjct: 7 KSDLVDAVAAQT-GFAKTNVKDMLDATLGVITAQTEAGSKVTLMGFGSFEQRQKKARMGR 65
Query: 63 APLAQKVISVEEKMVPFFRAGK 84
P + + + F+ K
Sbjct: 66 NPATGEQVEIPASAHLAFKPAK 87
>gi|167041244|gb|ABZ06000.1| putative bacterial DNA-binding protein [uncultured marine
microorganism HF4000_005D21]
gi|167045748|gb|ABZ10394.1| putative bacterial DNA-binding protein [uncultured marine bacterium
HF4000_APKG3108]
Length = 103
Score = 72.1 bits (176), Expect = 2e-11, Method: Composition-based stats.
Identities = 33/102 (32%), Positives = 56/102 (54%), Gaps = 2/102 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M+KS L+ + +P + +D+EKI+++++ E+ +AL VEIRGFG F R AR+
Sbjct: 1 MVKSELMQQLCNIHPNILRKDIEKILDIIIFEIIEALYRNEAVEIRGFGRFKTVIRKARI 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSP--DSTLSNS 100
R P I + K ++ K L +RLN ++ +S +
Sbjct: 61 GRNPKNSTAIQIPAKKAIKWKMSKILFKRLNKNFTENKISTN 102
>gi|92117746|ref|YP_577475.1| histone-like DNA-binding protein [Nitrobacter hamburgensis X14]
gi|91800640|gb|ABE63015.1| histone-like DNA-binding protein [Nitrobacter hamburgensis X14]
Length = 99
Score = 72.1 bits (176), Expect = 2e-11, Method: Composition-based stats.
Identities = 29/85 (34%), Positives = 46/85 (54%), Gaps = 1/85 (1%)
Query: 6 LIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLARAPL 65
L +A+ + +L+ + E I++ ++ +T+ L G R+ I G G VRKRAAR R P
Sbjct: 16 LAAALAEDH-ELSKKAAEAILSDMVTRITKHLKKGERIRIVGLGILQVRKRAARKGRNPA 74
Query: 66 AQKVISVEEKMVPFFRAGKNLKERL 90
+ I ++ FRA K LKE +
Sbjct: 75 TGEEIQIKASKKVAFRAAKELKEAI 99
>gi|288926402|ref|ZP_06420324.1| DNA-binding protein HU [Prevotella buccae D17]
gi|315608690|ref|ZP_07883668.1| DNA-binding protein HU [Prevotella buccae ATCC 33574]
gi|288336855|gb|EFC75219.1| DNA-binding protein HU [Prevotella buccae D17]
gi|315249540|gb|EFU29551.1| DNA-binding protein HU [Prevotella buccae ATCC 33574]
Length = 92
Score = 72.1 bits (176), Expect = 3e-11, Method: Composition-based stats.
Identities = 27/90 (30%), Positives = 47/90 (52%), Gaps = 1/90 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ +I +A L+ ++V +V +E + L V +RGFGSF ++ RAA+
Sbjct: 1 MTKAEIISEVAMAT-GLSKREVTAVVEAFMESVKNHLLKKESVFLRGFGSFIIKHRAAKT 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
AR I++ +P F+ K+L E++
Sbjct: 60 ARNISKNTTITIAAHDLPSFKPAKSLVEQM 89
>gi|332673359|gb|AEE70176.1| DNA-binding protein HU [Helicobacter pylori 83]
Length = 94
Score = 72.1 bits (176), Expect = 3e-11, Method: Composition-based stats.
Identities = 24/90 (26%), Positives = 45/90 (50%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ I + + + ++ E+ + + AL+ G VE+ GFG F ++ +
Sbjct: 1 MNKAEFIDLVKEAGKYNSKREAEEAITAFTLAVQTALSKGESVELVGFGKFETAEQKGKE 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
+ P + K E+K VP F+ GK LK+++
Sbjct: 61 GKVPGSDKTYKTEDKRVPKFKPGKILKQKV 90
>gi|58979381|gb|AAW83355.1| DNA-binding protein HU [Campylobacter jejuni]
Length = 98
Score = 72.1 bits (176), Expect = 3e-11, Method: Composition-based stats.
Identities = 33/90 (36%), Positives = 47/90 (52%), Gaps = 1/90 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ I +A + L +D + ++ +T LA G + GFG+FS ++RAAR
Sbjct: 1 MTKADFISLVA-QTAGLTKKDATTTTDAVISTITDVLAKGDSISFIGFGTFSTQERAARE 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
AR P K I V V F+ GKNLKE +
Sbjct: 60 ARVPSTGKTIKVPATRVAKFKVGKNLKEAV 89
>gi|116254928|ref|YP_770763.1| putative DNA-binding protein HU-alpha [Rhizobium leguminosarum
bv. viciae 3841]
gi|115259576|emb|CAK11544.1| putative DNA-binding protein Hu-alpha [Rhizobium leguminosarum
bv. viciae 3841]
Length = 92
Score = 72.1 bits (176), Expect = 3e-11, Method: Composition-based stats.
Identities = 25/88 (28%), Positives = 36/88 (40%), Gaps = 1/88 (1%)
Query: 5 SLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLARAP 64
+ IA ++ L + IV ++ +T+A G + GFG F V+ R AR P
Sbjct: 6 EIADKIAGEHS-LTKAQGKAIVEAVIASITEAAVAGNETSLPGFGKFKVKATPEREARNP 64
Query: 65 LAQKVISVEEKMVPFFRAGKNLKERLNS 92
I V F K LK+ LN
Sbjct: 65 STGATIKVAAAKKLAFTPAKALKDALNK 92
>gi|294053548|ref|YP_003547206.1| histone family protein DNA-binding protein [Coraliomargarita
akajimensis DSM 45221]
gi|293612881|gb|ADE53036.1| histone family protein DNA-binding protein [Coraliomargarita
akajimensis DSM 45221]
Length = 103
Score = 72.1 bits (176), Expect = 3e-11, Method: Composition-based stats.
Identities = 29/94 (30%), Positives = 47/94 (50%), Gaps = 2/94 (2%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K ++ I +K ++V + V + L+ + AL G VE+R FG F V+ R +R+
Sbjct: 6 TKRDIVLDIYEKT-DFPQKEVRETVQLTLDAIANALRQGRNVELRNFGVFEVQVRKSRIG 64
Query: 62 RAPLAQKV-ISVEEKMVPFFRAGKNLKERLNSPD 94
R P + + + + V F+AGK LK L D
Sbjct: 65 RNPNKPETDVVIPTRAVIKFKAGKELKGALKELD 98
>gi|255603750|ref|XP_002538109.1| DNA-binding protein HU, putative [Ricinus communis]
gi|223513783|gb|EEF24275.1| DNA-binding protein HU, putative [Ricinus communis]
Length = 92
Score = 72.1 bits (176), Expect = 3e-11, Method: Composition-based stats.
Identities = 28/88 (31%), Positives = 36/88 (40%), Gaps = 1/88 (1%)
Query: 5 SLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLARAP 64
+ IA + KL + IV + +T A +G I GFG F V+ AR AR P
Sbjct: 6 EIADKIAADH-KLTKVQSKAIVEAVFAAITGAATSGAETSIPGFGKFKVKDTPAREARNP 64
Query: 65 LAQKVISVEEKMVPFFRAGKNLKERLNS 92
I V F K LK+ LN
Sbjct: 65 GTGATIKVAASKKLAFTPAKALKDALNK 92
>gi|91763239|ref|ZP_01265203.1| Bacterial DNA-binding protein [Candidatus Pelagibacter ubique
HTCC1002]
gi|91717652|gb|EAS84303.1| Bacterial DNA-binding protein [Candidatus Pelagibacter ubique
HTCC1002]
Length = 100
Score = 72.1 bits (176), Expect = 3e-11, Method: Composition-based stats.
Identities = 22/94 (23%), Positives = 47/94 (50%), Gaps = 1/94 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K LI +I + + E +++ L + L ++++ FG+FS+R + +R+
Sbjct: 7 TKKDLINSIYMQI-GFSKNISENLIDDFLITIVDNLKIEKKLKLSKFGTFSIRAKKSRIG 65
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDS 95
R P ++ ++ + V F+A K K+ +NS +
Sbjct: 66 RNPKTKEQTTISNRDVVLFKASKEFKDLVNSKND 99
>gi|330992041|ref|ZP_08315990.1| DNA-binding protein HU-1 [Gluconacetobacter sp. SXCC-1]
gi|329761062|gb|EGG77557.1| DNA-binding protein HU-1 [Gluconacetobacter sp. SXCC-1]
Length = 91
Score = 72.1 bits (176), Expect = 3e-11, Method: Composition-based stats.
Identities = 28/91 (30%), Positives = 41/91 (45%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M + L+ IA + D K+++ L+E MT A G + + FG F V++ AAR
Sbjct: 1 MKIADLVDHIATTTDT-SKTDTRKVLDALVEAMTAAAKAGDEITLPNFGKFKVKEVAARE 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P I + F K LK+ LN
Sbjct: 60 GRNPATGAAIQIAASRKLAFTPAKALKDSLN 90
>gi|329954834|ref|ZP_08295851.1| LysM domain protein [Bacteroides clarus YIT 12056]
gi|328526938|gb|EGF53949.1| LysM domain protein [Bacteroides clarus YIT 12056]
Length = 412
Score = 71.7 bits (175), Expect = 3e-11, Method: Composition-based stats.
Identities = 18/90 (20%), Positives = 40/90 (44%), Gaps = 1/90 (1%)
Query: 4 SSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLARA 63
LI +A+K+ ++ ++ + V + + +AL V+I+G G+F + +R +
Sbjct: 8 QDLIDLLAEKH-GMSKKNADSFVKEFFQLIEEALEKDKYVKIKGLGAFKLIDVESRESVN 66
Query: 64 PLAQKVISVEEKMVPFFRAGKNLKERLNSP 93
+ ++ F LK+ +N P
Sbjct: 67 VNTGERFEIQGHTKVSFTPEPALKDIINKP 96
>gi|182412327|ref|YP_001817393.1| histone family protein DNA-binding protein [Opitutus terrae
PB90-1]
gi|177839541|gb|ACB73793.1| histone family protein DNA-binding protein [Opitutus terrae
PB90-1]
Length = 91
Score = 71.7 bits (175), Expect = 3e-11, Method: Composition-based stats.
Identities = 25/88 (28%), Positives = 45/88 (51%), Gaps = 1/88 (1%)
Query: 1 MIKSSLIGTIAKKN-PKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAAR 59
M K+ L+ + K + + E+ V+ +L +T+ L V++ GFG+F+V RAAR
Sbjct: 1 MNKAELVDEVRKLLGAETSTAAAERAVDAVLAAVTRGLHRDKEVQLVGFGAFAVATRAAR 60
Query: 60 LARAPLAQKVISVEEKMVPFFRAGKNLK 87
P Q+ + + F+AG+ L+
Sbjct: 61 RGFNPHTQQPMKIRAMKTIRFKAGQALR 88
>gi|328953678|ref|YP_004371012.1| histone family protein DNA-binding protein [Desulfobacca
acetoxidans DSM 11109]
gi|328454002|gb|AEB09831.1| histone family protein DNA-binding protein [Desulfobacca
acetoxidans DSM 11109]
Length = 95
Score = 71.7 bits (175), Expect = 3e-11, Method: Composition-based stats.
Identities = 28/92 (30%), Positives = 44/92 (47%), Gaps = 1/92 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K +I I K L+ Q+ V +L + +ALA V I GFG F+VR + R
Sbjct: 4 TKEKVINAINLKL-GLSKQEARSAVERVLHLIKEALAQEEDVLISGFGKFTVRSKNPRRG 62
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLNSP 93
R P ++ + + + V F+ L+ R+N P
Sbjct: 63 RNPQTKEDLILRARKVVVFKTSGVLRHRINQP 94
>gi|320528538|ref|ZP_08029695.1| DNA-binding protein HU [Solobacterium moorei F0204]
gi|320131124|gb|EFW23697.1| DNA-binding protein HU [Solobacterium moorei F0204]
Length = 96
Score = 71.7 bits (175), Expect = 3e-11, Method: Composition-based stats.
Identities = 27/90 (30%), Positives = 45/90 (50%), Gaps = 1/90 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K +L +A+K L + + VN + +E+ + GG V + GFG F+V K+ AR
Sbjct: 8 TKKTLADDLAEKY-GLTKKAAGEAVNYVFDEIATTIKKGGEVSLNGFGKFTVVKKKARTG 66
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
P + I ++ P F+A K LK+ +
Sbjct: 67 LNPATGEKIKIKATKAPKFKASKTLKDLVK 96
>gi|10955033|ref|NP_059689.1| hypothetical protein pTi_017 [Agrobacterium tumefaciens]
gi|1163198|gb|AAC28112.1| hupT [Agrobacterium tumefaciens]
Length = 92
Score = 71.7 bits (175), Expect = 3e-11, Method: Composition-based stats.
Identities = 22/87 (25%), Positives = 34/87 (39%), Gaps = 1/87 (1%)
Query: 5 SLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLARAP 64
+ IA + L + IV + +++T A G I FG F ++ R R P
Sbjct: 6 EIADKIAAEQ-NLTKAQAKTIVESVFKQITDAALAGAETSIPSFGKFKLKDTPEREGRNP 64
Query: 65 LAQKVISVEEKMVPFFRAGKNLKERLN 91
I + F GK +K+ LN
Sbjct: 65 ATGATIKIAASKKLTFTLGKAVKDALN 91
>gi|118602642|ref|YP_903857.1| histone family protein DNA-binding protein [Candidatus Ruthia
magnifica str. Cm (Calyptogena magnifica)]
gi|118567581|gb|ABL02386.1| histone family protein DNA-binding protein [Candidatus Ruthia
magnifica str. Cm (Calyptogena magnifica)]
Length = 95
Score = 71.7 bits (175), Expect = 3e-11, Method: Composition-based stats.
Identities = 20/89 (22%), Positives = 46/89 (51%), Gaps = 1/89 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
+ K + + K+ + + I + +++ Q LA+G V++ FG+F +R++++R
Sbjct: 3 ITKKDIASALV-KSMDITHVQALAITHDFFDQIKQTLASGESVKLSSFGNFVIREKSSRP 61
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKER 89
R P +++ + + V F++G LK
Sbjct: 62 GRNPKTGELVEILARKVVVFKSGLKLKSA 90
>gi|325105835|ref|YP_004275489.1| histone family protein DNA-binding protein [Pedobacter saltans
DSM 12145]
gi|324974683|gb|ADY53667.1| histone family protein DNA-binding protein [Pedobacter saltans
DSM 12145]
Length = 101
Score = 71.7 bits (175), Expect = 3e-11, Method: Composition-based stats.
Identities = 29/96 (30%), Positives = 48/96 (50%), Gaps = 1/96 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ +I IA K + DV++ V + + ++ +G V +RGFGSF V+KRA +
Sbjct: 1 MTKAEIIAEIANKT-GIEKVDVQETVEAFFKVVKNSMISGENVYVRGFGSFVVKKRAEKT 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDST 96
AR I + E VP F+ K +++ +
Sbjct: 60 ARNISKNTAIIIPEHFVPSFKPAKAFVDKVKVGNKK 95
>gi|209552051|ref|YP_002283967.1| histone family protein DNA-binding protein [Rhizobium
leguminosarum bv. trifolii WSM2304]
gi|209539644|gb|ACI59575.1| histone family protein DNA-binding protein [Rhizobium
leguminosarum bv. trifolii WSM2304]
Length = 92
Score = 71.7 bits (175), Expect = 3e-11, Method: Composition-based stats.
Identities = 25/88 (28%), Positives = 37/88 (42%), Gaps = 1/88 (1%)
Query: 5 SLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLARAP 64
+ IA ++ L + IV ++ +T+A G + GFG F V++ R AR P
Sbjct: 6 DIADKIATEHS-LTKTQGKAIVEAVIASITEAAVAGNETSLPGFGKFKVKETPERDARNP 64
Query: 65 LAQKVISVEEKMVPFFRAGKNLKERLNS 92
I V F K LK+ LN
Sbjct: 65 ATGATIKVAAAKKLAFTPAKALKDALNK 92
>gi|332884203|gb|EGK04471.1| hypothetical protein HMPREF9456_00798 [Dysgonomonas mossii DSM
22836]
Length = 445
Score = 71.7 bits (175), Expect = 3e-11, Method: Composition-based stats.
Identities = 23/90 (25%), Positives = 43/90 (47%), Gaps = 1/90 (1%)
Query: 4 SSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLARA 63
LI +AKK ++ ++ E + L+ +++ + + V+I+ FG+F + K AR +
Sbjct: 8 QDLIDLLAKKQ-EITKKEAEVFLRELIAVISETIESNESVKIKDFGTFKLVKVNARKSVD 66
Query: 64 PLAQKVISVEEKMVPFFRAGKNLKERLNSP 93
+ I + F K LKE +N P
Sbjct: 67 VNTGEAIEIAAHYKLSFTPDKLLKEAINRP 96
>gi|320088600|emb|CBY98359.1| DNA-binding protein HU-alpha NS2; HU-2 [Salmonella enterica
subsp. enterica serovar Weltevreden str.
2007-60-3289-1]
Length = 74
Score = 71.7 bits (175), Expect = 3e-11, Method: Composition-based stats.
Identities = 25/75 (33%), Positives = 38/75 (50%), Gaps = 1/75 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI IA K +L+ + + L +T++L G V++ GFG+F V RA R
Sbjct: 1 MNKTQLIDVIADK-AELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERT 59
Query: 61 ARAPLAQKVISVEEK 75
R P K I + +
Sbjct: 60 GRNPQTGKEIKIRRR 74
>gi|289628684|ref|ZP_06461638.1| single-stranded binding protein [Pseudomonas syringae pv. aesculi
str. NCPPB3681]
Length = 95
Score = 71.7 bits (175), Expect = 3e-11, Method: Composition-based stats.
Identities = 21/91 (23%), Positives = 33/91 (36%), Gaps = 1/91 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K L+ IA+ + L + + L +G + + G G V +R AR
Sbjct: 4 TKDQLVAGIAEAI-DAPKTTARNALEQLGQIVADQLESGAEITLPGIGKLKVAERPARTG 62
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P I + K F K L + +N
Sbjct: 63 RNPSTGASIEIAAKKAIKFVPAKVLNDSINK 93
>gi|330891782|gb|EGH24443.1| single-stranded binding protein [Pseudomonas syringae pv. mori
str. 301020]
Length = 104
Score = 71.7 bits (175), Expect = 3e-11, Method: Composition-based stats.
Identities = 24/91 (26%), Positives = 36/91 (39%), Gaps = 1/91 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K I IA+ K ++ L + + L NG + + G G V +R AR
Sbjct: 4 TKDQFIAGIAEAI-DAPKNTTGKALDQLGQIVADQLGNGAEITLPGIGKLKVAERPARTG 62
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P I + K V F K L + +N+
Sbjct: 63 RHPSTGAAIEIAAKKVIKFVPAKRLNDAINN 93
>gi|312889709|ref|ZP_07749257.1| histone family protein DNA-binding protein [Mucilaginibacter
paludis DSM 18603]
gi|311297829|gb|EFQ74950.1| histone family protein DNA-binding protein [Mucilaginibacter
paludis DSM 18603]
Length = 101
Score = 71.7 bits (175), Expect = 3e-11, Method: Composition-based stats.
Identities = 30/92 (32%), Positives = 48/92 (52%), Gaps = 1/92 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ +I I K K + E I++ E + +L NG V +RGFG+F V+KRAA++
Sbjct: 1 MTKADVIAGITAKTGK-GKEATETIIDAFFEVVQSSLTNGEDVFVRGFGTFLVKKRAAKI 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R + + E +P FR G K ++ +
Sbjct: 60 GRNITKNTAVQIPESYIPAFRPGDEFKNKVKA 91
>gi|304415444|ref|ZP_07396093.1| integration host factor (IHF) DNA-binding protein alpha subunit
[Candidatus Regiella insecticola LSR1]
gi|304282708|gb|EFL91222.1| integration host factor (IHF) DNA-binding protein alpha subunit
[Candidatus Regiella insecticola LSR1]
Length = 97
Score = 71.7 bits (175), Expect = 3e-11, Method: Composition-based stats.
Identities = 20/92 (21%), Positives = 45/92 (48%), Gaps = 1/92 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K ++ + +K ++ +++V +E+ L +++ FG+F VR + R
Sbjct: 4 TKDNIAENLTEKL-GIDKPVAKQLVESFFDEICLILKEERELKVSKFGNFVVRDKPQRPG 62
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLNSP 93
R P + I + + V F++G+ LK+ + +P
Sbjct: 63 RNPKTGEGIPISARSVVTFKSGQRLKKEVENP 94
>gi|317503239|ref|ZP_07961297.1| DNA-binding protein HU [Prevotella salivae DSM 15606]
gi|315665652|gb|EFV05261.1| DNA-binding protein HU [Prevotella salivae DSM 15606]
Length = 97
Score = 71.7 bits (175), Expect = 3e-11, Method: Composition-based stats.
Identities = 29/92 (31%), Positives = 47/92 (51%), Gaps = 1/92 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M I +A ++ DV+K+VN L+E M + G V + GFG+F V+KR R+
Sbjct: 1 MNNKEFISEMALRS-GYTQADVQKLVNTLIEGMGNSFEAGENVSLSGFGTFEVKKRMERV 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
P + V K+V F+ ++KE+L +
Sbjct: 60 VVNPSTGLRMLVPPKLVLAFKPNASVKEKLKN 91
>gi|222102443|ref|YP_002539482.1| HNS-type DNA binding protein [Agrobacterium vitis S4]
gi|221739044|gb|ACM39777.1| HNS-type DNA binding protein [Agrobacterium vitis S4]
Length = 92
Score = 71.7 bits (175), Expect = 3e-11, Method: Composition-based stats.
Identities = 23/88 (26%), Positives = 34/88 (38%), Gaps = 1/88 (1%)
Query: 5 SLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLARAP 64
+ IA N L + IV + + + A + I GFG F V+ R R P
Sbjct: 6 EIADKIAANN-GLTKVQAKGIVESVFKAIADAAGSDAETSIPGFGKFKVKTSPEREGRNP 64
Query: 65 LAQKVISVEEKMVPFFRAGKNLKERLNS 92
+ ++V F K LK+ LN
Sbjct: 65 ATGEKMTVAASKKLTFAPAKALKDALNK 92
>gi|254455329|ref|ZP_05068758.1| bacterial DNA-binding protein [Candidatus Pelagibacter sp.
HTCC7211]
gi|207082331|gb|EDZ59757.1| bacterial DNA-binding protein [Candidatus Pelagibacter sp.
HTCC7211]
Length = 99
Score = 71.7 bits (175), Expect = 3e-11, Method: Composition-based stats.
Identities = 19/94 (20%), Positives = 46/94 (48%), Gaps = 1/94 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K L+ + + + Q E ++ L + + + ++++ FG+FS+R++ +R+
Sbjct: 6 TKKDLVNLVYMQL-GFSKQISENLIEDFLSTIIKNIKLEKKLKLSKFGTFSIRQKKSRIG 64
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDS 95
R P ++ + + V F+ K K+ +N D+
Sbjct: 65 RNPKTKESKIISSRDVVLFKPSKEFKDFINLKDN 98
>gi|325300776|ref|YP_004260692.1| histone family protein DNA-binding protein [Bacteroides
salanitronis DSM 18170]
gi|324320329|gb|ADY38219.1| histone family protein DNA-binding protein [Bacteroides
salanitronis DSM 18170]
Length = 176
Score = 71.7 bits (175), Expect = 3e-11, Method: Composition-based stats.
Identities = 29/99 (29%), Positives = 48/99 (48%), Gaps = 1/99 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ L+ IA K ++ +DV I+ L+ E+ +L G + +RGFGSF ++ RA +
Sbjct: 1 MTKAELVNIIAIKT-GIDKKDVMAIMESLMAEVKNSLGKGKHIYLRGFGSFIIKHRAEKT 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDSTLSN 99
AR + V +P F+ ++ P SN
Sbjct: 60 ARNISQNTTVMVPAHNIPAFKPAMEFVNAVSKPQDKNSN 98
>gi|332827119|gb|EGJ99904.1| hypothetical protein HMPREF9455_03777 [Dysgonomonas gadei ATCC
BAA-286]
Length = 420
Score = 71.7 bits (175), Expect = 3e-11, Method: Composition-based stats.
Identities = 23/90 (25%), Positives = 41/90 (45%), Gaps = 1/90 (1%)
Query: 4 SSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLARA 63
LI +AKK + ++ E + L+ ++ ++ + V I+ FG F + K AR +
Sbjct: 8 QDLIDLLAKKQ-GIAKKEAETFLRELIAVISVSIESNDSVRIKDFGVFKLVKVNARKSVD 66
Query: 64 PLAQKVISVEEKMVPFFRAGKNLKERLNSP 93
+ I + F K+LKE +N P
Sbjct: 67 VNTGEAIEIPAHYKLSFTPDKSLKEAINKP 96
>gi|320537407|ref|ZP_08037357.1| putative integration host factor subunit alpha [Treponema
phagedenis F0421]
gi|320145733|gb|EFW37399.1| putative integration host factor subunit alpha [Treponema
phagedenis F0421]
Length = 103
Score = 71.7 bits (175), Expect = 3e-11, Method: Composition-based stats.
Identities = 31/90 (34%), Positives = 49/90 (54%), Gaps = 1/90 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
++SL I +K +Y+ IV+ L+EEM AL G +E+R FG F ++ R + +
Sbjct: 7 TRASLTDLIYRKF-GYDYRITATIVDSLIEEMASALKRGETIELRNFGVFELQHRKSSIG 65
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R A + + E+ V FR GKNL+E +
Sbjct: 66 RNISAGTAVKIPERYVVAFRPGKNLREAVK 95
>gi|256830730|ref|YP_003159458.1| histone family protein DNA-binding protein [Desulfomicrobium
baculatum DSM 4028]
gi|256579906|gb|ACU91042.1| histone family protein DNA-binding protein [Desulfomicrobium
baculatum DSM 4028]
Length = 97
Score = 71.7 bits (175), Expect = 3e-11, Method: Composition-based stats.
Identities = 26/90 (28%), Positives = 47/90 (52%), Gaps = 1/90 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ ++ +I +K+ + N +V+ V +L+ M +A+ + I GFG F ++ AR
Sbjct: 7 TKAEIVDSIYEKSER-NRAEVKAQVETMLDIMKEAVKKDHSLLISGFGKFEAYEKDARKG 65
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + I + E+ V FR + L+ LN
Sbjct: 66 RNPQTSESIILSERKVVVFRISRKLRAELN 95
>gi|312959161|ref|ZP_07773680.1| DNA-binding protein HU, nu subunit [Pseudomonas fluorescens WH6]
gi|311286931|gb|EFQ65493.1| DNA-binding protein HU, nu subunit [Pseudomonas fluorescens WH6]
Length = 93
Score = 71.7 bits (175), Expect = 3e-11, Method: Composition-based stats.
Identities = 24/92 (26%), Positives = 38/92 (41%), Gaps = 1/92 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
+ K LI +A+ V +++ L + + L NGG + + G G V +R AR
Sbjct: 3 ITKDQLIADLAEA-VDAPKTTVRALLDQLSQVVADQLENGGEITLPGIGKLKVTERPART 61
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P I + K V K L + +N
Sbjct: 62 GRNPSTGAAIEIAAKKVIKLVVAKGLTDAVNK 93
>gi|296114688|ref|ZP_06833340.1| putative DNA binding protein [Gluconacetobacter hansenii ATCC
23769]
gi|295978784|gb|EFG85510.1| putative DNA binding protein [Gluconacetobacter hansenii ATCC
23769]
Length = 91
Score = 71.7 bits (175), Expect = 3e-11, Method: Composition-based stats.
Identities = 27/91 (29%), Positives = 41/91 (45%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M + L+ IA + + K+++ L+E MT A G + + FG F V++ AAR
Sbjct: 1 MKIADLVDHIATTTDT-SKTETRKVLDALIETMTVAAKAGDEITLPNFGKFKVKEVAARE 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P I + F K LK+ LN
Sbjct: 60 GRNPATGATIQIAASRKLAFTPAKALKDSLN 90
>gi|317178804|dbj|BAJ56592.1| dna-binding protein hu [Helicobacter pylori F30]
Length = 94
Score = 71.7 bits (175), Expect = 3e-11, Method: Composition-based stats.
Identities = 24/90 (26%), Positives = 46/90 (51%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ I + + + ++ E+ ++ + AL+ G VE+ GFG F ++ +
Sbjct: 1 MNKAEFIDLVKEAGKYNSKREAEEAISAFTLAVQTALSKGESVELVGFGKFETAEQKGKE 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
+ P + K E+K VP F+ GK LK+++
Sbjct: 61 GKVPGSDKTYKTEDKRVPKFKPGKILKQKV 90
>gi|298292191|ref|YP_003694130.1| histone family protein DNA-binding protein [Starkeya novella DSM
506]
gi|296928702|gb|ADH89511.1| histone family protein DNA-binding protein [Starkeya novella DSM
506]
Length = 92
Score = 71.7 bits (175), Expect = 3e-11, Method: Composition-based stats.
Identities = 29/90 (32%), Positives = 43/90 (47%), Gaps = 1/90 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ L+ +A++ + + + +L G V++ GFGSFSV RAAR
Sbjct: 3 TKNELVAAVAEQAKLTKAAAAAAVDAT-FDAIAASLKAGEEVKLIGFGSFSVVTRAAREG 61
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P K + +E P F GK LKE +N
Sbjct: 62 RNPRTGKPVKIEASKAPKFTPGKGLKETVN 91
>gi|260061540|ref|YP_003194620.1| DNA-binding protein HU [Robiginitalea biformata HTCC2501]
gi|88785672|gb|EAR16841.1| DNA-binding protein HU [Robiginitalea biformata HTCC2501]
Length = 96
Score = 71.7 bits (175), Expect = 3e-11, Method: Composition-based stats.
Identities = 26/93 (27%), Positives = 45/93 (48%), Gaps = 1/93 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ ++ I+++ + DV+ V +E + +L NG V +RGFGSF ++ RA +
Sbjct: 1 MTKADIVSIISEEL-GMEKGDVQATVEKFMEAVKSSLENGDNVYLRGFGSFIIKTRAEKT 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSP 93
R I + +P F+ K E + S
Sbjct: 60 GRNISKNTTIKIPAHNIPAFKPAKVFVEGVKSN 92
>gi|255011482|ref|ZP_05283608.1| putative DNA-binding protein HU [Bacteroides fragilis 3_1_12]
gi|313149304|ref|ZP_07811497.1| DNA-binding protein HU [Bacteroides fragilis 3_1_12]
gi|313138071|gb|EFR55431.1| DNA-binding protein HU [Bacteroides fragilis 3_1_12]
Length = 95
Score = 71.7 bits (175), Expect = 3e-11, Method: Composition-based stats.
Identities = 24/86 (27%), Positives = 48/86 (55%), Gaps = 1/86 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ +I I+++ ++ + V ++ ++ + AL G V +RGFG+FS++KRAA+
Sbjct: 1 MTKADIINRISEEQ-GIDRKTVALVIEGFMKCVKDALGRGRSVFLRGFGTFSLKKRAAKK 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNL 86
A+ I + + VP F+ ++
Sbjct: 60 AQNIQQHITICIPTRKVPHFKPSESF 85
>gi|213963105|ref|ZP_03391363.1| DNA-binding protein HU [Capnocytophaga sputigena Capno]
gi|213954189|gb|EEB65513.1| DNA-binding protein HU [Capnocytophaga sputigena Capno]
Length = 116
Score = 71.7 bits (175), Expect = 3e-11, Method: Composition-based stats.
Identities = 26/88 (29%), Positives = 44/88 (50%), Gaps = 1/88 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ ++ I+ K L+ DV+ V ++E+ +L +G V +RGFGSF ++ RA +
Sbjct: 20 MTKAEIVSKISDKL-GLDRNDVQLTVENFMDEVINSLESGQNVYLRGFGSFIIKTRAEKT 78
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKE 88
R I + +P F+ K E
Sbjct: 79 GRNISKNTTIKIPAHNIPAFKPAKVFVE 106
>gi|311068519|ref|YP_003973442.1| putative HU-related DNA-binding protein; phage SPbeta [Bacillus
atrophaeus 1942]
gi|310869036|gb|ADP32511.1| putative HU-related DNA-binding protein; phage SPbeta [Bacillus
atrophaeus 1942]
Length = 91
Score = 71.7 bits (175), Expect = 3e-11, Method: Composition-based stats.
Identities = 23/73 (31%), Positives = 42/73 (57%), Gaps = 1/73 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ L+G +A+K + ++ V + E + + L+ G +++ GFG+F VR+RAAR
Sbjct: 1 MNKAELVGAVAEKL-GVTKKEATPKVEAVFEVLAETLSKGEEIKVSGFGTFEVRERAARK 59
Query: 61 ARAPLAQKVISVE 73
R P + + I +
Sbjct: 60 GRNPQSGEEIDIP 72
>gi|251771308|gb|EES51889.1| putative integration host factor, alpha subunit HimA like protein
[Leptospirillum ferrodiazotrophum]
Length = 104
Score = 71.7 bits (175), Expect = 4e-11, Method: Composition-based stats.
Identities = 23/84 (27%), Positives = 43/84 (51%), Gaps = 2/84 (2%)
Query: 1 MIKSSLIGTIAKKNPK--LNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAA 58
M ++ ++ L + V + ++ ++EE+T ++ G V++ GFG+F VRKR
Sbjct: 1 MNRTDIVEYTRNNGGGIGLPRKAVREALDFVIEEITNSVLAGESVKLTGFGTFEVRKRED 60
Query: 59 RLARAPLAQKVISVEEKMVPFFRA 82
RL R P + + ++ V FR
Sbjct: 61 RLGRNPKTGEPLLIKSHKVVVFRP 84
>gi|58698152|ref|ZP_00373074.1| DNA-binding protein, HU family [Wolbachia endosymbiont of
Drosophila ananassae]
gi|225629919|ref|YP_002726710.1| DNA-binding protein, HU family [Wolbachia sp. wRi]
gi|225677271|ref|ZP_03788254.1| DNA-binding protein, HU family [Wolbachia endosymbiont of
Muscidifurax uniraptor]
gi|58535302|gb|EAL59379.1| DNA-binding protein, HU family [Wolbachia endosymbiont of
Drosophila ananassae]
gi|225590691|gb|EEH11935.1| DNA-binding protein, HU family [Wolbachia endosymbiont of
Muscidifurax uniraptor]
gi|225591900|gb|ACN94919.1| DNA-binding protein, HU family [Wolbachia sp. wRi]
Length = 103
Score = 71.3 bits (174), Expect = 4e-11, Method: Composition-based stats.
Identities = 22/99 (22%), Positives = 45/99 (45%), Gaps = 4/99 (4%)
Query: 1 MIKSSLIGTIAK----KNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKR 56
M K +I + + +N + D+ KI + ++ + L G + + G G+FS
Sbjct: 1 MSKEDIIKQLKEDCSSQNIDITKSDLSKIHDAFIKIIKNELHGKGEIRLHGIGTFSTAIS 60
Query: 57 AARLARAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDS 95
+ R P + ++++V +K F+A + L LN +
Sbjct: 61 QEKQCRNPQSGEIMTVPKKTRVKFKASQTLLSILNEKEK 99
>gi|300113361|ref|YP_003759936.1| histone family protein DNA-binding protein [Nitrosococcus watsonii
C-113]
gi|299539298|gb|ADJ27615.1| histone family protein DNA-binding protein [Nitrosococcus watsonii
C-113]
Length = 109
Score = 71.3 bits (174), Expect = 4e-11, Method: Composition-based stats.
Identities = 22/79 (27%), Positives = 34/79 (43%), Gaps = 1/79 (1%)
Query: 4 SSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLARA 63
L G IA + + VE ++ +++ L +G V + FG F R AR AR
Sbjct: 23 KELAGRIAAQT-GMETDQVEVVLAAFKKQVIADLTSGQEVRLSHFGKFYARHMEAREARN 81
Query: 64 PLAQKVISVEEKMVPFFRA 82
P + I V + F+A
Sbjct: 82 PRTGEAIQVPPRSYLRFKA 100
>gi|329956611|ref|ZP_08297184.1| DNA-binding protein HU-beta [Bacteroides clarus YIT 12056]
gi|328523983|gb|EGF51059.1| DNA-binding protein HU-beta [Bacteroides clarus YIT 12056]
Length = 88
Score = 71.3 bits (174), Expect = 4e-11, Method: Composition-based stats.
Identities = 25/72 (34%), Positives = 42/72 (58%), Gaps = 1/72 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI +A + L+ D ++ ++ + +T+AL G +V + GFG+FSV +RA R+
Sbjct: 1 MNKSELISAMAAE-AGLSKADSKRALDAFIASVTKALKAGDKVALVGFGTFSVMERAGRV 59
Query: 61 ARAPLAQKVISV 72
P +K I +
Sbjct: 60 GINPATKKPIQI 71
>gi|257456676|ref|ZP_05621869.1| DNA-binding protein, HU family [Treponema vincentii ATCC 35580]
gi|257445943|gb|EEV20993.1| DNA-binding protein, HU family [Treponema vincentii ATCC 35580]
Length = 112
Score = 71.3 bits (174), Expect = 4e-11, Method: Composition-based stats.
Identities = 31/90 (34%), Positives = 48/90 (53%), Gaps = 2/90 (2%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+S++ I KK+ + D+ + ++ EM QAL G +EIRGFG+FSV+ R R
Sbjct: 11 TKTSIVDAIYKKSDHMLK-DIHSVSDLFFAEMFQALERGETIEIRGFGTFSVQFRKGRKG 69
Query: 62 -RAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P +++ + V FR GK L +
Sbjct: 70 MRNPKTGELVDTADHSVVVFRPGKILSAAV 99
>gi|32266292|ref|NP_860324.1| histone-like DNA-binding protein HU (HupB) [Helicobacter
hepaticus ATCC 51449]
gi|32262342|gb|AAP77390.1| Histone-like DNA-binding protein HU (HupB) [Helicobacter
hepaticus ATCC 51449]
Length = 95
Score = 71.3 bits (174), Expect = 4e-11, Method: Composition-based stats.
Identities = 28/90 (31%), Positives = 48/90 (53%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ + + K +D E+ VN ++ +++AL+ VE+ GFG F + A+
Sbjct: 1 MNKAEFVDLVKKVGEYNTKKDAEQAVNSFVDAISKALSKKQSVELVGFGKFETAIQKAKT 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
+ P K + +EK VP FR GK LK+++
Sbjct: 61 GKVPGTNKTYTTKEKSVPKFRPGKGLKDQV 90
>gi|270158045|ref|ZP_06186702.1| integration host factor alpha subunit [Legionella longbeachae
D-4968]
gi|289163687|ref|YP_003453825.1| integration host factor, alpha subunit [Legionella longbeachae
NSW150]
gi|269990070|gb|EEZ96324.1| integration host factor alpha subunit [Legionella longbeachae
D-4968]
gi|288856860|emb|CBJ10671.1| putative integration host factor, alpha subunit [Legionella
longbeachae NSW150]
Length = 97
Score = 71.3 bits (174), Expect = 4e-11, Method: Composition-based stats.
Identities = 27/95 (28%), Positives = 48/95 (50%), Gaps = 4/95 (4%)
Query: 1 MI---KSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRA 57
M K+ + T+ + L+ +++V EE+ AL +G V++ GFG+F++R +
Sbjct: 1 MNALSKAIMAETLCDEL-NLSKPASKEMVENFFEELRHALEHGHHVKLSGFGNFTLRDKP 59
Query: 58 ARLARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R R P + I V + V F+ G LK ++ S
Sbjct: 60 QRPGRNPKTGEEIPVVARRVVTFKPGLKLKSKIES 94
>gi|282880537|ref|ZP_06289244.1| DNA-binding protein HU [Prevotella timonensis CRIS 5C-B1]
gi|281305640|gb|EFA97693.1| DNA-binding protein HU [Prevotella timonensis CRIS 5C-B1]
Length = 90
Score = 71.3 bits (174), Expect = 4e-11, Method: Composition-based stats.
Identities = 31/91 (34%), Positives = 51/91 (56%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI IA+ ++ +K ++ + + +AL G +V++ GFG+FSV +RAAR
Sbjct: 1 MNKTELIDRIAEA-AGISKIAAKKALDGTTDAIKEALVKGEKVQLIGFGTFSVSERAARE 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
P ++ I +E K V F+AG L + L
Sbjct: 60 GINPSTKEKIKIEAKKVAKFKAGAELADALK 90
>gi|301166851|emb|CBW26428.1| integration host factor beta-subunit [Bacteriovorax marinus SJ]
Length = 108
Score = 71.3 bits (174), Expect = 4e-11, Method: Composition-based stats.
Identities = 38/96 (39%), Positives = 55/96 (57%), Gaps = 1/96 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI I +K L ++ E I+N+ + M ++L N R+EIRGFGSF+ R A
Sbjct: 8 MTKADLIAAI-EKQANLTHKQAESIINICFDSMIKSLYNDERIEIRGFGSFANRNYKAYE 66
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDST 96
R P KV+ V K VPFF+ GK L+E +++
Sbjct: 67 GRNPKTGKVVKVPPKKVPFFKVGKELREMVDAGKDK 102
>gi|320353542|ref|YP_004194881.1| histone family protein DNA-binding protein [Desulfobulbus
propionicus DSM 2032]
gi|320122044|gb|ADW17590.1| histone family protein DNA-binding protein [Desulfobulbus
propionicus DSM 2032]
Length = 96
Score = 71.3 bits (174), Expect = 4e-11, Method: Composition-based stats.
Identities = 21/91 (23%), Positives = 48/91 (52%), Gaps = 1/91 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
+ L ++ +K ++ ++ +IV+ + M + G +++ FG+ +VR ++ R
Sbjct: 7 TRKELAISVNEKL-GVSQRNAAEIVDTVFAIMKTTMVAGESIKLVQFGTLTVRDKSPRRG 65
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P + +++ ++ + FR K L+ERLN
Sbjct: 66 RNPRTGESMTITKRQMVSFRPSKRLRERLNK 96
>gi|317014245|gb|ADU81681.1| DNA-binding protein HU [Helicobacter pylori Gambia94/24]
Length = 96
Score = 71.3 bits (174), Expect = 4e-11, Method: Composition-based stats.
Identities = 25/90 (27%), Positives = 46/90 (51%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ I + + + ++ E+ +N + AL+ G VE+ GFG F ++ +
Sbjct: 1 MNKAEFIDLVKEAGKYNSKREAEEAINAFTLAVETALSKGESVELIGFGKFETAEQKGKE 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
+ P + K E+K VP F+ GK LK+++
Sbjct: 61 GKVPGSDKTYKTEDKRVPKFKPGKILKQKV 90
>gi|224369803|ref|YP_002603967.1| IhfA [Desulfobacterium autotrophicum HRM2]
gi|223692520|gb|ACN15803.1| IhfA [Desulfobacterium autotrophicum HRM2]
Length = 108
Score = 71.3 bits (174), Expect = 4e-11, Method: Composition-based stats.
Identities = 22/99 (22%), Positives = 43/99 (43%), Gaps = 1/99 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ + +K ++ I+ LE + + L G V I GFG F V ++ AR
Sbjct: 4 TKTEITER-FQKALDISRNTSYDIMEDFLEIIKETLEQGEDVMISGFGKFCVNEKKARKG 62
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDSTLSNS 100
R P + + + + V F+ L+ +N+ + ++
Sbjct: 63 RNPATSEEMILPARRVITFKCSGKLRNLINTSEQKQGST 101
>gi|114769939|ref|ZP_01447549.1| DNA-binding protein HU, form N [alpha proteobacterium HTCC2255]
gi|114549644|gb|EAU52526.1| DNA-binding protein HU, form N [alpha proteobacterium HTCC2255]
Length = 96
Score = 71.3 bits (174), Expect = 4e-11, Method: Composition-based stats.
Identities = 22/91 (24%), Positives = 39/91 (42%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ L+ +A+ + + + L + +++ +A GG V + G G F R R R+
Sbjct: 6 MTKTQLVANLAEAT-GSDKVTANRALEALADIVSKEVAAGGAVTLPGLGKFQCRARPERM 64
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + V K LK+ +N
Sbjct: 65 VRNPATGEQFMKAADRVAKVTIAKALKDVIN 95
>gi|323342075|ref|ZP_08082308.1| integration host factor subunit alpha [Erysipelothrix
rhusiopathiae ATCC 19414]
gi|322464500|gb|EFY09693.1| integration host factor subunit alpha [Erysipelothrix
rhusiopathiae ATCC 19414]
Length = 94
Score = 71.3 bits (174), Expect = 4e-11, Method: Composition-based stats.
Identities = 26/90 (28%), Positives = 43/90 (47%), Gaps = 1/90 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K L +IA K ++ + + + L+E+ + L N G V++ GFG F VR RA R
Sbjct: 6 NKKLLSESIAGKL-DISKKQANEFIETFLDEVKEILENKGTVDLAGFGKFEVRHRAERDG 64
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
P ++ I + F+ K LK+ +
Sbjct: 65 FNPQTKEKIRIAASHSVGFKPAKALKDAVK 94
>gi|317476992|ref|ZP_07936234.1| bacterial DNA-binding protein [Bacteroides eggerthii 1_2_48FAA]
gi|316906785|gb|EFV28497.1| bacterial DNA-binding protein [Bacteroides eggerthii 1_2_48FAA]
Length = 389
Score = 71.3 bits (174), Expect = 4e-11, Method: Composition-based stats.
Identities = 17/90 (18%), Positives = 40/90 (44%), Gaps = 1/90 (1%)
Query: 4 SSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLARA 63
LI +A+K+ ++ ++ + V + + +AL V+++G G+F + +R +
Sbjct: 8 QDLIDLLAEKH-GMSKKNADSFVKEFFQLIEEALEKDKYVKVKGLGAFKLIDVESRESVN 66
Query: 64 PLAQKVISVEEKMVPFFRAGKNLKERLNSP 93
+ ++ F LK+ +N P
Sbjct: 67 VNTGERFEIQGHTKVSFTPEPALKDLINKP 96
>gi|222080139|ref|YP_002540002.1| HNS-type DNA binding protein [Agrobacterium vitis S4]
gi|221738784|gb|ACM39563.1| HNS-type DNA binding protein [Agrobacterium vitis S4]
Length = 92
Score = 71.3 bits (174), Expect = 4e-11, Method: Composition-based stats.
Identities = 21/88 (23%), Positives = 33/88 (37%), Gaps = 1/88 (1%)
Query: 5 SLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLARAP 64
+ IA + L + IV + + +T A I FG F ++ R R P
Sbjct: 6 EIADKIASEQS-LTRAQAKTIVESVFKHITDAALACAETSIPSFGKFKIKDTPERQGRNP 64
Query: 65 LAQKVISVEEKMVPFFRAGKNLKERLNS 92
I + F GK +K+ LN+
Sbjct: 65 ATGATIKIAASKKLTFTPGKAVKDALNA 92
>gi|217034118|ref|ZP_03439538.1| hypothetical protein HP9810_868g11 [Helicobacter pylori 98-10]
gi|216943402|gb|EEC22858.1| hypothetical protein HP9810_868g11 [Helicobacter pylori 98-10]
Length = 94
Score = 71.3 bits (174), Expect = 4e-11, Method: Composition-based stats.
Identities = 24/90 (26%), Positives = 45/90 (50%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ I + + + ++ E+ + + AL+ G VE+ GFG F ++ +
Sbjct: 1 MNKAEFIDLVKEAGKYNSKREAEEAITAFTLAVQTALSKGESVELVGFGKFETAEQKGKE 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
+ P + K E+K VP F+ GK LK+++
Sbjct: 61 GKVPGSDKTYKTEDKRVPKFKPGKILKQKV 90
>gi|241518439|ref|YP_002979067.1| histone family protein DNA-binding protein [Rhizobium
leguminosarum bv. trifolii WSM1325]
gi|240862852|gb|ACS60516.1| histone family protein DNA-binding protein [Rhizobium
leguminosarum bv. trifolii WSM1325]
Length = 92
Score = 71.3 bits (174), Expect = 4e-11, Method: Composition-based stats.
Identities = 26/88 (29%), Positives = 36/88 (40%), Gaps = 1/88 (1%)
Query: 5 SLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLARAP 64
+ IA + L + IV ++ +TQA +G + GFG F V+ R AR P
Sbjct: 6 EIADKIAGDHS-LTKAQGKAIVEAVIASITQAAMDGNETSLPGFGKFKVKATPEREARNP 64
Query: 65 LAQKVISVEEKMVPFFRAGKNLKERLNS 92
I V F K LK+ LN
Sbjct: 65 ATGATIKVAAAKKLAFTPAKALKDALNK 92
>gi|167836518|ref|ZP_02463401.1| histone family protein DNA-binding protein [Burkholderia
thailandensis MSMB43]
Length = 64
Score = 71.3 bits (174), Expect = 4e-11, Method: Composition-based stats.
Identities = 21/62 (33%), Positives = 36/62 (58%)
Query: 30 LEEMTQALANGGRVEIRGFGSFSVRKRAARLARAPLAQKVISVEEKMVPFFRAGKNLKER 89
++ +T A++ V++ GFG+FS +R+AR R P + I++ F AGK LK+
Sbjct: 1 MDAITGAVSRDEAVQLVGFGAFSRGQRSARTGRNPTTGEEIAIAAANTVRFAAGKALKDA 60
Query: 90 LN 91
+N
Sbjct: 61 VN 62
>gi|77165933|ref|YP_344458.1| histone-like DNA-binding protein [Nitrosococcus oceani ATCC 19707]
gi|76884247|gb|ABA58928.1| Histone-like DNA-binding protein [Nitrosococcus oceani ATCC 19707]
Length = 109
Score = 71.3 bits (174), Expect = 4e-11, Method: Composition-based stats.
Identities = 22/79 (27%), Positives = 37/79 (46%), Gaps = 1/79 (1%)
Query: 4 SSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLARA 63
L G IAK+ + +E+++ +++ LA+G V + FG F + AR AR
Sbjct: 23 KELAGRIAKQT-GMAPDQIEEVLVAFKKQIIADLASGQEVRLSHFGKFYAKHMNAREARN 81
Query: 64 PLAQKVISVEEKMVPFFRA 82
P + I V + F+A
Sbjct: 82 PRTGEAIQVPPRSYLRFKA 100
>gi|296273437|ref|YP_003656068.1| histone family protein DNA-binding protein [Arcobacter
nitrofigilis DSM 7299]
gi|296097611|gb|ADG93561.1| histone family protein DNA-binding protein [Arcobacter
nitrofigilis DSM 7299]
Length = 91
Score = 71.3 bits (174), Expect = 5e-11, Method: Composition-based stats.
Identities = 32/90 (35%), Positives = 48/90 (53%), Gaps = 1/90 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ I +A K L+ +D + V+ +LE +T+ L V GFG+FS RAAR
Sbjct: 1 MNKAEFIDAVATK-AGLSKKDAKCAVDSVLETITETLVKNESVSFIGFGTFSTAARAART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
A+ P + + V+ V F+ GK LKE +
Sbjct: 60 AKVPGTDRTVDVKATTVAKFKVGKALKEAV 89
>gi|242281191|ref|YP_002993320.1| histone family protein DNA-binding protein [Desulfovibrio
salexigens DSM 2638]
gi|242124085|gb|ACS81781.1| histone family protein DNA-binding protein [Desulfovibrio
salexigens DSM 2638]
Length = 97
Score = 71.0 bits (173), Expect = 5e-11, Method: Composition-based stats.
Identities = 25/90 (27%), Positives = 45/90 (50%), Gaps = 1/90 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+S++ I +K N +++++V +L+ M QA+ + I GFG F + AR
Sbjct: 8 TKASVVDYIYEKT-DRNRAEIKELVESILDIMKQAVKKDHAMLISGFGKFEAYDKNARKG 66
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + I++ + V FR + + LN
Sbjct: 67 RNPQTNEAITLPARKVVVFRLSRKFRAELN 96
>gi|218131130|ref|ZP_03459934.1| hypothetical protein BACEGG_02735 [Bacteroides eggerthii DSM
20697]
gi|217986650|gb|EEC52984.1| hypothetical protein BACEGG_02735 [Bacteroides eggerthii DSM
20697]
Length = 397
Score = 71.0 bits (173), Expect = 5e-11, Method: Composition-based stats.
Identities = 17/90 (18%), Positives = 40/90 (44%), Gaps = 1/90 (1%)
Query: 4 SSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLARA 63
LI +A+K+ ++ ++ + V + + +AL V+++G G+F + +R +
Sbjct: 8 QDLIDLLAEKH-GMSKKNADSFVKEFFQLIEEALEKDKYVKVKGLGAFKLIDVESRESVN 66
Query: 64 PLAQKVISVEEKMVPFFRAGKNLKERLNSP 93
+ ++ F LK+ +N P
Sbjct: 67 VNTGERFEIQGHTKVSFTPEPALKDLINKP 96
>gi|323343529|ref|ZP_08083756.1| DNA-binding protein HU [Prevotella oralis ATCC 33269]
gi|323095348|gb|EFZ37922.1| DNA-binding protein HU [Prevotella oralis ATCC 33269]
Length = 114
Score = 71.0 bits (173), Expect = 5e-11, Method: Composition-based stats.
Identities = 29/92 (31%), Positives = 47/92 (51%), Gaps = 2/92 (2%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI IA L+ +K ++ E + AL G +V++ GFG+FSV +R AR+
Sbjct: 24 MNKTELIEKIAA-GSGLSKAAAKKALDATTEAIKAALVAGDKVQLIGFGTFSVTERPARV 82
Query: 61 ARAP-LAQKVISVEEKMVPFFRAGKNLKERLN 91
P + I++ K V F+ G L + +
Sbjct: 83 GVNPAKKGQKINIPAKKVAKFKVGAELADAVK 114
>gi|196232747|ref|ZP_03131598.1| histone family protein DNA-binding protein [Chthoniobacter flavus
Ellin428]
gi|196223207|gb|EDY17726.1| histone family protein DNA-binding protein [Chthoniobacter flavus
Ellin428]
Length = 107
Score = 71.0 bits (173), Expect = 5e-11, Method: Composition-based stats.
Identities = 24/90 (26%), Positives = 42/90 (46%), Gaps = 2/90 (2%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K L+ I+ + L V +V L+ +T ALA G VE+R FG V+ R+
Sbjct: 5 TKRELVVKISNET-GLVQHQVFDVVQRTLDHITDALAQGDTVELRNFGILEVKLTKPRVG 63
Query: 62 RAP-LAQKVISVEEKMVPFFRAGKNLKERL 90
R P + + F++GK +++++
Sbjct: 64 RNPNQPGSSFVIPARATVKFKSGKIMRQKV 93
>gi|301061082|ref|ZP_07201879.1| putative integration host factor subunit alpha [delta
proteobacterium NaphS2]
gi|300444876|gb|EFK08844.1| putative integration host factor subunit alpha [delta
proteobacterium NaphS2]
Length = 93
Score = 71.0 bits (173), Expect = 5e-11, Method: Composition-based stats.
Identities = 29/91 (31%), Positives = 48/91 (52%), Gaps = 1/91 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K +I I K + ++++ L+E M Q LA+G + I GFG F VR++ AR
Sbjct: 4 TKERIIERIWKDTDQ-KKAEIQRTFESLVEIMKQTLASGEDIMISGFGKFCVREKKARRG 62
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P + + ++ + V F+ L+E+LNS
Sbjct: 63 RNPQTGEAMDLDGRKVVTFKCSGKLREKLNS 93
>gi|257469123|ref|ZP_05633217.1| hypothetical protein FulcA4_07245 [Fusobacterium ulcerans ATCC
49185]
gi|317063369|ref|ZP_07927854.1| DNA-binding protein HU [Fusobacterium ulcerans ATCC 49185]
gi|313689045|gb|EFS25880.1| DNA-binding protein HU [Fusobacterium ulcerans ATCC 49185]
Length = 106
Score = 71.0 bits (173), Expect = 5e-11, Method: Composition-based stats.
Identities = 30/91 (32%), Positives = 43/91 (47%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K + K + +K+ ++ + + L G V GFG F +RAAR
Sbjct: 1 MTKKEFVELFGTKAGIKTKVEADKLTKAFIDTLEEILVKGENVSFIGFGKFEAAERAART 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
P +K + VE K V FRAGKNL E++N
Sbjct: 61 CVNPQTKKPMKVEAKKVAKFRAGKNLLEKMN 91
>gi|42560949|ref|NP_975400.1| DNA-binding protein HU (HB) [Mycoplasma mycoides subsp. mycoides
SC str. PG1]
gi|83320061|ref|YP_424544.1| DNA-binding protein HU 1 [Mycoplasma capricolum subsp. capricolum
ATCC 27343]
gi|42492446|emb|CAE77042.1| DNA-binding protein HU (HB) [Mycoplasma mycoides subsp. mycoides
SC str. PG1]
gi|83283947|gb|ABC01879.1| DNA-binding protein HU 1 [Mycoplasma capricolum subsp. capricolum
ATCC 27343]
gi|301321355|gb|ADK69998.1| DNA-binding protein HU [Mycoplasma mycoides subsp. mycoides SC
str. Gladysdale]
Length = 90
Score = 71.0 bits (173), Expect = 5e-11, Method: Composition-based stats.
Identities = 27/90 (30%), Positives = 43/90 (47%), Gaps = 1/90 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K LI N ++ D EK+VN + + +++ L G V + GFG F + +R++R
Sbjct: 1 MTKKELIEE-IIINENISKVDAEKVVNRIFQTISKHLIEGKEVSVAGFGKFVISERSSRE 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
P + I + F+ K LKE L
Sbjct: 60 GVNPSTGEKIIIPASRSARFKPAKQLKESL 89
>gi|83747725|ref|ZP_00944760.1| DNA-binding protein HU [Ralstonia solanacearum UW551]
gi|207743976|ref|YP_002260368.1| dna-binding protein hu-beta (ns1) (hu-1) [Ralstonia solanacearum
IPO1609]
gi|83725635|gb|EAP72778.1| DNA-binding protein HU [Ralstonia solanacearum UW551]
gi|206595378|emb|CAQ62305.1| dna-binding protein hu-beta (ns1) (hu-1) [Ralstonia solanacearum
IPO1609]
Length = 91
Score = 71.0 bits (173), Expect = 5e-11, Method: Composition-based stats.
Identities = 24/80 (30%), Positives = 36/80 (45%), Gaps = 1/80 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K LI +A K ++ E ++N L E + + G + I G F +RAA+
Sbjct: 1 MTKQELIKHLADK-AEVTKGKAEDLLNALTETILDTVRAGNELTITDLGKFGSVERAAKT 59
Query: 61 ARAPLAQKVISVEEKMVPFF 80
R P VI++ K P F
Sbjct: 60 GRNPKTGDVIAIAAKRAPKF 79
>gi|94984283|ref|YP_603647.1| histone-like protein DNA-binding protein [Deinococcus geothermalis
DSM 11300]
gi|94554564|gb|ABF44478.1| histone-like protein DNA-binding protein [Deinococcus geothermalis
DSM 11300]
Length = 116
Score = 71.0 bits (173), Expect = 5e-11, Method: Composition-based stats.
Identities = 23/85 (27%), Positives = 40/85 (47%), Gaps = 1/85 (1%)
Query: 3 KSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLAR 62
K+ ++ IA++ L+ + + V +L+ + QAL G V + G G+ SV + AAR
Sbjct: 30 KTQIVDQIAERTS-LSRKQASEAVATILDTIAQALREGKTVGLPGLGTLSVTETAARTGV 88
Query: 63 APLAQKVISVEEKMVPFFRAGKNLK 87
P + I + F+ LK
Sbjct: 89 RPGTSERIQIPAGKKIRFKVATTLK 113
>gi|312116028|ref|YP_004013624.1| histone family protein DNA-binding protein [Rhodomicrobium
vannielii ATCC 17100]
gi|311221157|gb|ADP72525.1| histone family protein DNA-binding protein [Rhodomicrobium
vannielii ATCC 17100]
Length = 126
Score = 71.0 bits (173), Expect = 5e-11, Method: Composition-based stats.
Identities = 25/86 (29%), Positives = 44/86 (51%), Gaps = 1/86 (1%)
Query: 5 SLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLARAP 64
L +A+ + L+ + ++++ + + + L G R+ I G G+ VRKRAAR R P
Sbjct: 42 QLATEVAEAH-GLSQKQANEVLSEAVSSIGKHLKKGARIRIAGLGTLEVRKRAARTGRNP 100
Query: 65 LAQKVISVEEKMVPFFRAGKNLKERL 90
+ I ++ FRA K+L E +
Sbjct: 101 ATGEAIEIKASKKVAFRAAKDLSESI 126
>gi|238898892|ref|YP_002924574.1| integration host factor (IHF), DNA-binding protein, alpha subunit
[Candidatus Hamiltonella defensa 5AT (Acyrthosiphon
pisum)]
gi|229466652|gb|ACQ68426.1| integration host factor (IHF), DNA-binding protein, alpha subunit
[Candidatus Hamiltonella defensa 5AT (Acyrthosiphon
pisum)]
Length = 107
Score = 71.0 bits (173), Expect = 5e-11, Method: Composition-based stats.
Identities = 23/101 (22%), Positives = 51/101 (50%), Gaps = 3/101 (2%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVE--IRGFGSFSVRKRAA 58
+ K+ ++ +++K L ++ + ++ + EE+ L + E GFG+F++R + A
Sbjct: 3 ITKADILDDVSEKF-GLEPKESKDLLELFFEEIRCILGDEECSELKFSGFGNFNLRDKKA 61
Query: 59 RLARAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDSTLSN 99
R R P + + ++++ V F AG LK + + + S
Sbjct: 62 RPGRNPKTGEDVLIKKRRVVTFHAGLKLKTLIENGNEKCSK 102
>gi|257125480|ref|YP_003163594.1| histone family protein DNA-binding protein [Leptotrichia buccalis
C-1013-b]
gi|257049419|gb|ACV38603.1| histone family protein DNA-binding protein [Leptotrichia buccalis
C-1013-b]
Length = 93
Score = 71.0 bits (173), Expect = 5e-11, Method: Composition-based stats.
Identities = 22/74 (29%), Positives = 39/74 (52%), Gaps = 1/74 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K + AK + + E++VN L+ + ++L G V+ G+G+F V++RAAR
Sbjct: 1 MSKKEFVDAYAKATGE-TKKRAEELVNQFLDTVEESLLKGDSVQFVGWGTFEVKERAART 59
Query: 61 ARAPLAQKVISVEE 74
P ++ I + E
Sbjct: 60 GINPQTKEEIQIPE 73
>gi|224436626|ref|ZP_03657635.1| histone-like DNA-binding protein HU (HupB) [Helicobacter cinaedi
CCUG 18818]
gi|313143126|ref|ZP_07805319.1| conserved hypothetical protein [Helicobacter cinaedi CCUG 18818]
gi|313128157|gb|EFR45774.1| conserved hypothetical protein [Helicobacter cinaedi CCUG 18818]
Length = 95
Score = 71.0 bits (173), Expect = 5e-11, Method: Composition-based stats.
Identities = 30/90 (33%), Positives = 45/90 (50%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ + + K +D EK VN ++ ++QAL VE+ GFG F + A+
Sbjct: 1 MNKAEFVELVKKVGEYDTKKDAEKAVNSFVDAISQALTKKQSVELVGFGKFETAVQKAKT 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
+ P K EK VP FR GK LK+++
Sbjct: 61 GKVPGTNKTYKTSEKAVPKFRPGKGLKDQV 90
>gi|308272437|emb|CBX29041.1| DNA-binding protein HU-beta [uncultured Desulfobacterium sp.]
Length = 90
Score = 71.0 bits (173), Expect = 5e-11, Method: Composition-based stats.
Identities = 30/91 (32%), Positives = 47/91 (51%), Gaps = 2/91 (2%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALA-NGGRVEIRGFGSFSVRKRAAR 59
M K+ L+ IA + K+ ++ + +T+AL G+V + GFG+FS KR AR
Sbjct: 1 MTKAELVDAIAA-DAKITKTAAVAALDSFTKNVTKALKSKDGKVTLVGFGTFSKAKRVAR 59
Query: 60 LARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P I ++ + V +AGK LKE +
Sbjct: 60 KGRNPQTGAEIKIKARNVVKIKAGKKLKEAV 90
>gi|188527318|ref|YP_001910005.1| dna-binding protein hu [Helicobacter pylori Shi470]
gi|30060258|gb|AAP13078.1| DNA-binding protein HU [Helicobacter pylori NCTC 11637]
gi|188143558|gb|ACD47975.1| dna-binding protein hu [Helicobacter pylori Shi470]
gi|308062156|gb|ADO04044.1| DNA-binding protein HU [Helicobacter pylori Cuz20]
Length = 94
Score = 71.0 bits (173), Expect = 5e-11, Method: Composition-based stats.
Identities = 25/90 (27%), Positives = 46/90 (51%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ I + + + ++ E+ +N + AL+ G VE+ GFG F ++ +
Sbjct: 1 MNKAEFIDLVKEAGKYNSKREAEEAINAFTLAVETALSKGESVELIGFGKFETAEQKGKE 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
+ P + K E+K VP F+ GK LK+++
Sbjct: 61 GKVPGSDKTYKTEDKRVPKFKPGKILKQKV 90
>gi|294155859|ref|YP_003560243.1| DNA-binding protein HU [Mycoplasma crocodyli MP145]
gi|291600263|gb|ADE19759.1| DNA-binding protein HU [Mycoplasma crocodyli MP145]
Length = 93
Score = 71.0 bits (173), Expect = 5e-11, Method: Composition-based stats.
Identities = 20/94 (21%), Positives = 40/94 (42%), Gaps = 1/94 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K I IA + ++V K + + + + L +V++ G+FS + + R
Sbjct: 1 MTKKEFIMKIANRT-GYTVKEVNKFFDTFVFFLKEELIGEEKVQLSSLGTFSTQIKHKRH 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSPD 94
+ + + + EK V F K L+E ++
Sbjct: 60 TKNAFTGEDLFIPEKRVVKFTPSKYLRELIDLKK 93
>gi|253572936|ref|ZP_04850333.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
gi|251837463|gb|EES65557.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
Length = 92
Score = 71.0 bits (173), Expect = 5e-11, Method: Composition-based stats.
Identities = 28/85 (32%), Positives = 46/85 (54%), Gaps = 2/85 (2%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI +A+K ++V +I++ +E++Q L V I+ FG+F + AR+
Sbjct: 3 MNKTDLIKMVAEK-ANKPTKEVAEIIDSFFKELSQNLREKD-VSIKDFGTFKKIIQPARI 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKN 85
AR P + + V EK V F+ KN
Sbjct: 61 ARNPATGEPVEVPEKEVVKFKPSKN 85
>gi|298373677|ref|ZP_06983666.1| DNA-binding protein HU [Bacteroidetes oral taxon 274 str. F0058]
gi|298274729|gb|EFI16281.1| DNA-binding protein HU [Bacteroidetes oral taxon 274 str. F0058]
Length = 93
Score = 71.0 bits (173), Expect = 5e-11, Method: Composition-based stats.
Identities = 22/94 (23%), Positives = 45/94 (47%), Gaps = 1/94 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ ++ +++K ++ +V + + ++ + +L G V +R FGSF V++RAA+
Sbjct: 1 MTKADIVNEVSRKT-GISRDEVLRTLESFMDTVKNSLGKGENVYMRTFGSFIVKQRAAKT 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSPD 94
AR I + +P F+ K +
Sbjct: 60 ARNITKNTTIKIPAHKIPAFKPSKEFSAMVKKLK 93
>gi|68171301|ref|ZP_00544701.1| Histone-like bacterial DNA-binding protein [Ehrlichia chaffeensis
str. Sapulpa]
gi|88657660|ref|YP_506989.1| integration host factor, alpha subunit [Ehrlichia chaffeensis
str. Arkansas]
gi|67999282|gb|EAM85931.1| Histone-like bacterial DNA-binding protein [Ehrlichia chaffeensis
str. Sapulpa]
gi|88599117|gb|ABD44586.1| integration host factor, alpha subunit [Ehrlichia chaffeensis
str. Arkansas]
Length = 100
Score = 71.0 bits (173), Expect = 5e-11, Method: Composition-based stats.
Identities = 28/95 (29%), Positives = 47/95 (49%), Gaps = 1/95 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
KS + I ++ L+ +D +V +L+EM AL ++I FG+F K+ AR+
Sbjct: 6 TKSKIAEVI-NRDVGLSREDASSVVGEILDEMLNALVKDRILKISSFGTFKSYKKKARMG 64
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDST 96
R P + ++E+ F +K +NS DST
Sbjct: 65 RNPKTSEEFVIKERYTVSFYPSILIKHSINSDDST 99
>gi|325300201|ref|YP_004260118.1| histone family protein DNA-binding protein [Bacteroides
salanitronis DSM 18170]
gi|324319754|gb|ADY37645.1| histone family protein DNA-binding protein [Bacteroides
salanitronis DSM 18170]
Length = 90
Score = 71.0 bits (173), Expect = 5e-11, Method: Composition-based stats.
Identities = 21/91 (23%), Positives = 43/91 (47%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ L+ I+ + + + ++ + E+ +L G V +R FG+F ++ RA ++
Sbjct: 1 MTKAELVKEIS-QTTGTDSVTILSVIESFMSEVKSSLERGDEVTLRSFGTFCLKHRAEKV 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
AR + + E +P F+ +RL
Sbjct: 60 ARNLSLNTSMVIPEHDIPSFKPSTEFLKRLK 90
>gi|70728443|ref|YP_258192.1| DNA-binding protein HU, nu subunit [Pseudomonas fluorescens Pf-5]
gi|68342742|gb|AAY90348.1| DNA-binding protein HU, nu subunit [Pseudomonas fluorescens Pf-5]
Length = 93
Score = 71.0 bits (173), Expect = 5e-11, Method: Composition-based stats.
Identities = 24/92 (26%), Positives = 36/92 (39%), Gaps = 1/92 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
+ K LI IA+ ++ L + + L NGG + + G G V +R AR
Sbjct: 3 ITKDQLIADIAEAI-DAPKTTARNALDQLAQIVADQLENGGEITLPGIGKLKVTERPART 61
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P I + K V K L + +N
Sbjct: 62 GRNPSTGAAIEIAAKKVIKLVVAKGLTDAVNK 93
>gi|224540004|ref|ZP_03680543.1| hypothetical protein BACCELL_04916 [Bacteroides cellulosilyticus
DSM 14838]
gi|224518371|gb|EEF87476.1| hypothetical protein BACCELL_04916 [Bacteroides cellulosilyticus
DSM 14838]
Length = 471
Score = 71.0 bits (173), Expect = 6e-11, Method: Composition-based stats.
Identities = 21/88 (23%), Positives = 40/88 (45%), Gaps = 1/88 (1%)
Query: 6 LIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLARAPL 65
LI +A+K+ ++ D E V + + ++L N V+IRG G+F + +R +
Sbjct: 10 LIELLAEKH-GMDKADAESFVKEFFQLIEESLENDKYVKIRGLGTFKLIDVESRESVNIN 68
Query: 66 AQKVISVEEKMVPFFRAGKNLKERLNSP 93
+ ++ F LK+ +N P
Sbjct: 69 TGERFEIQGHTKVSFAPEPALKDLINKP 96
>gi|107101236|ref|ZP_01365154.1| hypothetical protein PaerPA_01002269 [Pseudomonas aeruginosa
PACS2]
Length = 63
Score = 71.0 bits (173), Expect = 6e-11, Method: Composition-based stats.
Identities = 27/63 (42%), Positives = 40/63 (63%)
Query: 29 LLEEMTQALANGGRVEIRGFGSFSVRKRAARLARAPLAQKVISVEEKMVPFFRAGKNLKE 88
++E +T AL G V + GFG+F+V++RAAR R P K I + +P F+AGK LK+
Sbjct: 1 MIESVTGALKAGDSVVLVGFGTFAVKERAARTGRNPQTGKPIKIAAAKIPGFKAGKALKD 60
Query: 89 RLN 91
+N
Sbjct: 61 AVN 63
>gi|298207122|ref|YP_003715301.1| DNA-binding protein HU [Croceibacter atlanticus HTCC2559]
gi|83849756|gb|EAP87624.1| DNA-binding protein HU [Croceibacter atlanticus HTCC2559]
Length = 97
Score = 71.0 bits (173), Expect = 6e-11, Method: Composition-based stats.
Identities = 25/93 (26%), Positives = 44/93 (47%), Gaps = 1/93 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ ++ IA + + +V+ V +EE+ +L G V +RGFGSF +++RA +
Sbjct: 1 MTKADIVAKIADRI-GMEKNEVQATVETFMEEVKTSLEGGENVYLRGFGSFIIKERAEKT 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSP 93
R I + +P F+ K E +
Sbjct: 60 GRNISKNTTIKIPAHNIPAFKPAKVFMEGVKEN 92
>gi|307637527|gb|ADN79977.1| DNA-binding protein [Helicobacter pylori 908]
gi|325996116|gb|ADZ51521.1| DNA-binding protein [Helicobacter pylori 2018]
gi|325997712|gb|ADZ49920.1| DNA-binding protein HU [Helicobacter pylori 2017]
Length = 94
Score = 71.0 bits (173), Expect = 6e-11, Method: Composition-based stats.
Identities = 25/94 (26%), Positives = 46/94 (48%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ I + + + ++ E+ +N + AL+ G VE+ GFG F ++ +
Sbjct: 1 MNKAEFIDLVKEAGKYNSKREAEEAINAFTLAVETALSKGESVELVGFGKFETAEQKGKE 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSPD 94
+ P + K E+K VP F+ GK LK+++
Sbjct: 61 GKVPGSDKTYKTEDKRVPKFKPGKILKQKVEESK 94
>gi|189485571|ref|YP_001956512.1| DNA-binding protein HU-1 [uncultured Termite group 1 bacterium
phylotype Rs-D17]
gi|170287530|dbj|BAG14051.1| DNA-binding protein HU-1 [uncultured Termite group 1 bacterium
phylotype Rs-D17]
Length = 89
Score = 71.0 bits (173), Expect = 6e-11, Method: Composition-based stats.
Identities = 22/90 (24%), Positives = 40/90 (44%), Gaps = 1/90 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K ++ ++ L D K + L++ + L N G + + G GSF + R AR
Sbjct: 1 MKKPDIVKQVSD-ISGLTQGDSNKAIKALVKVIQITLKNNGVISLSGLGSFRAKTRKARQ 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P ++VI + F+ L++ +
Sbjct: 60 GRNPKTKEVILIPPGKKVSFKPTTTLRKII 89
>gi|148826039|ref|YP_001290792.1| integration host factor subunit alpha [Haemophilus influenzae
PittEE]
gi|229847462|ref|ZP_04467559.1| 50S ribosomal protein L35 [Haemophilus influenzae 7P49H1]
gi|166918506|sp|A5UCA8|IHFA_HAEIE RecName: Full=Integration host factor subunit alpha;
Short=IHF-alpha
gi|148716199|gb|ABQ98409.1| 50S ribosomal protein L35 [Haemophilus influenzae PittEE]
gi|229809603|gb|EEP45330.1| 50S ribosomal protein L35 [Haemophilus influenzae 7P49H1]
Length = 96
Score = 71.0 bits (173), Expect = 6e-11, Method: Composition-based stats.
Identities = 28/94 (29%), Positives = 52/94 (55%), Gaps = 1/94 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
+ K +I ++ K L+ QD + +V LEE+ +L +G V++ GFG+F +R +++R
Sbjct: 4 ITKLDIIEYLSDKY-HLSKQDTKNVVENFLEEIRLSLESGQDVKLSGFGNFELRDKSSRP 62
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSPD 94
R P V++V + V F+ G+ L+ R+
Sbjct: 63 GRNPKTGDVVAVSARRVVTFKPGQKLRARVEKTK 96
>gi|223940629|ref|ZP_03632472.1| histone family protein DNA-binding protein [bacterium Ellin514]
gi|223890710|gb|EEF57228.1| histone family protein DNA-binding protein [bacterium Ellin514]
Length = 119
Score = 71.0 bits (173), Expect = 6e-11, Method: Composition-based stats.
Identities = 26/91 (28%), Positives = 48/91 (52%), Gaps = 2/91 (2%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K L+ I+ + + Q ++ + L + +AL+ G +VE+R FG F V+ R AR+
Sbjct: 3 MTKRDLVIRISNETGLVQQQVLDVVQKTLDY-IAEALSKGDKVELRNFGVFEVKVRKARI 61
Query: 61 ARAPLAQKV-ISVEEKMVPFFRAGKNLKERL 90
R P A + + ++ V F+ GK ++ +
Sbjct: 62 GRNPNAPATDVPIPQRSVVKFKPGKEMRAEV 92
>gi|325268537|ref|ZP_08135167.1| DNA-binding protein HU-beta [Prevotella multiformis DSM 16608]
gi|324989065|gb|EGC21018.1| DNA-binding protein HU-beta [Prevotella multiformis DSM 16608]
Length = 91
Score = 70.6 bits (172), Expect = 6e-11, Method: Composition-based stats.
Identities = 30/92 (32%), Positives = 50/92 (54%), Gaps = 1/92 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI IA + L+ D +K ++ E + AL G +V++ GFG+F+V +R A
Sbjct: 1 MNKTELIEKIAA-SAGLSKADAKKALDATTEAIKGALVAGDKVQLVGFGTFAVNERPAHE 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
P ++ I + K V F+AG L + +N+
Sbjct: 60 GINPATKEKIQIAAKKVAKFKAGAELADAVNA 91
>gi|110347039|ref|YP_665857.1| histone-like DNA-binding protein [Mesorhizobium sp. BNC1]
gi|110283150|gb|ABG61210.1| histone-like DNA-binding protein [Chelativorans sp. BNC1]
Length = 92
Score = 70.6 bits (172), Expect = 6e-11, Method: Composition-based stats.
Identities = 26/87 (29%), Positives = 35/87 (40%), Gaps = 1/87 (1%)
Query: 5 SLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLARAP 64
+ IA + L + IV + +E+ A A G I FG F +K AAR R P
Sbjct: 6 EIADKIAGAH-GLTKAQAKTIVESVFKEIAGAAAAGAETSIPAFGKFKPKKTAAREGRNP 64
Query: 65 LAQKVISVEEKMVPFFRAGKNLKERLN 91
I + F K LK+ LN
Sbjct: 65 STGATIRIAASTKLTFTPAKALKDALN 91
>gi|108563246|ref|YP_627562.1| DNA-binding protein HU [Helicobacter pylori HPAG1]
gi|107837019|gb|ABF84888.1| DNA-binding protein HU [Helicobacter pylori HPAG1]
Length = 94
Score = 70.6 bits (172), Expect = 6e-11, Method: Composition-based stats.
Identities = 24/90 (26%), Positives = 46/90 (51%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ I + + + ++ E+ ++ + AL+ G VE+ GFG F ++ +
Sbjct: 1 MNKAEFIDLVKEAGKYSSKREAEEAISAFTLAVETALSKGESVELVGFGKFETAEQKGKE 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
+ P + K E+K VP F+ GK LK+++
Sbjct: 61 GKVPGSDKTYKTEDKRVPKFKPGKILKQKV 90
>gi|189464081|ref|ZP_03012866.1| hypothetical protein BACINT_00416 [Bacteroides intestinalis DSM
17393]
gi|198275171|ref|ZP_03207702.1| hypothetical protein BACPLE_01329 [Bacteroides plebeius DSM
17135]
gi|255010947|ref|ZP_05283073.1| putative HU-like DNA binding protein [Bacteroides fragilis
3_1_12]
gi|298482410|ref|ZP_07000596.1| DNA-binding protein HU [Bacteroides sp. D22]
gi|313148752|ref|ZP_07810945.1| predicted protein [Bacteroides fragilis 3_1_12]
gi|317477426|ref|ZP_07936654.1| bacterial DNA-binding protein [Bacteroides eggerthii 1_2_48FAA]
gi|189438415|gb|EDV07400.1| hypothetical protein BACINT_00416 [Bacteroides intestinalis DSM
17393]
gi|198271991|gb|EDY96261.1| hypothetical protein BACPLE_01329 [Bacteroides plebeius DSM
17135]
gi|298271389|gb|EFI12964.1| DNA-binding protein HU [Bacteroides sp. D22]
gi|313137519|gb|EFR54879.1| predicted protein [Bacteroides fragilis 3_1_12]
gi|316906408|gb|EFV28134.1| bacterial DNA-binding protein [Bacteroides eggerthii 1_2_48FAA]
Length = 92
Score = 70.6 bits (172), Expect = 6e-11, Method: Composition-based stats.
Identities = 28/86 (32%), Positives = 47/86 (54%), Gaps = 2/86 (2%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI +A+K ++V +I++ +E++Q L V I+ FG+F + AR+
Sbjct: 3 MNKTDLIKMVAEK-ANKPTKEVAEIIDSFFKELSQNLREKD-VSIKDFGTFKKIIQPARI 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNL 86
AR P + + V EK V F+ KN+
Sbjct: 61 ARNPATGEPVEVPEKEVVKFKPSKNI 86
>gi|308273400|emb|CBX30002.1| Integration host factor subunit alpha [uncultured
Desulfobacterium sp.]
Length = 94
Score = 70.6 bits (172), Expect = 6e-11, Method: Composition-based stats.
Identities = 22/92 (23%), Positives = 42/92 (45%), Gaps = 2/92 (2%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ ++ + + + I+ LL + L NG V I GFG F V+K++ R
Sbjct: 4 TKNDIVARVHE--LGFTKKKSVDIIESLLMIIKNNLENGDDVLISGFGKFCVKKKSQRRG 61
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLNSP 93
R P + + ++ V F+ L++++N
Sbjct: 62 RNPATGSDLILRQRRVVTFKCSGKLRDKINKN 93
>gi|46446802|ref|YP_008167.1| putative integration host factor [Candidatus Protochlamydia
amoebophila UWE25]
gi|46400443|emb|CAF23892.1| putative integration host factor [Candidatus Protochlamydia
amoebophila UWE25]
Length = 120
Score = 70.6 bits (172), Expect = 6e-11, Method: Composition-based stats.
Identities = 25/95 (26%), Positives = 49/95 (51%), Gaps = 2/95 (2%)
Query: 6 LIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLARAPL 65
LI +I+ ++ ++ DV ++ L+++T L+ G R+E R FG F V +R ++ R P
Sbjct: 24 LINSIS-QDKGIHPNDVRHVIQAFLDKITDCLSQGERLEFREFGVFEVVERKQKIGRNPK 82
Query: 66 AQK-VISVEEKMVPFFRAGKNLKERLNSPDSTLSN 99
I + + F GK +++ + +S L+
Sbjct: 83 NAAVPIVIPARQAVKFTPGKKMRQVVEMEESYLAE 117
>gi|317182148|dbj|BAJ59932.1| dna-binding protein hu [Helicobacter pylori F57]
Length = 94
Score = 70.6 bits (172), Expect = 6e-11, Method: Composition-based stats.
Identities = 24/90 (26%), Positives = 46/90 (51%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ I + + + ++ E+ ++ + AL+ G VE+ GFG F ++ +
Sbjct: 1 MNKAEFINLVKEAGKYNSKREAEEAISAFTLAVQTALSKGESVELVGFGKFETAEQKGKE 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
+ P + K E+K VP F+ GK LK+++
Sbjct: 61 GKVPGSDKTYKTEDKRVPKFKPGKILKQKV 90
>gi|288926971|ref|ZP_06420867.1| DNA-binding protein HU [Prevotella buccae D17]
gi|288336254|gb|EFC74639.1| DNA-binding protein HU [Prevotella buccae D17]
Length = 493
Score = 70.6 bits (172), Expect = 6e-11, Method: Composition-based stats.
Identities = 20/96 (20%), Positives = 41/96 (42%), Gaps = 4/96 (4%)
Query: 1 MIK---SSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRA 57
M + + L T++ K+ ++ D E V ++ + L V+I+ FG+F +
Sbjct: 6 MNRIGITELARTLSSKH-NMSQADAENFVRLMFAVVGDGLEQEKLVKIKSFGTFKMGSVK 64
Query: 58 ARLARAPLAQKVISVEEKMVPFFRAGKNLKERLNSP 93
R + + I +E + F L++ +N P
Sbjct: 65 DRESVDVNTGERIVIEGRNKINFTPDNALRDFVNRP 100
>gi|189463459|ref|ZP_03012244.1| hypothetical protein BACCOP_04178 [Bacteroides coprocola DSM
17136]
gi|265753811|ref|ZP_06089166.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
gi|189429888|gb|EDU98872.1| hypothetical protein BACCOP_04178 [Bacteroides coprocola DSM
17136]
gi|263235525|gb|EEZ21049.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
Length = 93
Score = 70.6 bits (172), Expect = 7e-11, Method: Composition-based stats.
Identities = 24/94 (25%), Positives = 45/94 (47%), Gaps = 1/94 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ ++ IA++ + + V +V +E + A+ G V +RGFGSF +++RA ++
Sbjct: 1 MTKAEIVSRIAQQT-GIEKEVVMTVVEAFMENVKDAMIAGNEVFLRGFGSFIIKQRAEKV 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSPD 94
AR I + +P F+ K +
Sbjct: 60 ARNISKNTTIVIPAHSIPAFKPAKVFLNAVKEGK 93
>gi|289650209|ref|ZP_06481552.1| single-stranded binding protein [Pseudomonas syringae pv. aesculi
str. 2250]
Length = 97
Score = 70.6 bits (172), Expect = 7e-11, Method: Composition-based stats.
Identities = 23/91 (25%), Positives = 36/91 (39%), Gaps = 1/91 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K L+ IA+ K + L + + L +G + + G G V +R AR
Sbjct: 4 TKDQLVVGIAEAI-DAPKTTARKTLEQLGQIVADQLESGAEITLPGIGKLKVAERPARTG 62
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P I + K V F + K L + +N
Sbjct: 63 RNPSTGAAIEIAAKKVVKFVSAKVLNDAINK 93
>gi|60650162|ref|YP_209715.1| putative HU-like DNA binding protein [Bacteroides fragilis NCTC
9343]
gi|60495242|emb|CAH05736.1| putative HU-like DNA binding protein [Bacteroides fragilis NCTC
9343]
Length = 90
Score = 70.6 bits (172), Expect = 7e-11, Method: Composition-based stats.
Identities = 28/85 (32%), Positives = 46/85 (54%), Gaps = 2/85 (2%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI +A+K ++V +I++ +E++Q L V I+ FG+F + AR+
Sbjct: 1 MNKTDLIKMVAEK-ANKPTKEVAEIIDSFFKELSQNLREKD-VSIKDFGTFKKIIQPARI 58
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKN 85
AR P + + V EK V F+ KN
Sbjct: 59 ARNPATGEPVEVPEKEVVKFKPSKN 83
>gi|225847908|ref|YP_002728071.1| DNA-binding protein HU 1 (DNA-binding protein II) (HB)
[Sulfurihydrogenibium azorense Az-Fu1]
gi|225643424|gb|ACN98474.1| DNA-binding protein HU 1 (DNA-binding protein II) (HB)
[Sulfurihydrogenibium azorense Az-Fu1]
Length = 91
Score = 70.6 bits (172), Expect = 7e-11, Method: Composition-based stats.
Identities = 31/92 (33%), Positives = 46/92 (50%), Gaps = 1/92 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K LI +A+K + + + E + +A++ G RV I GFG F++R+R R
Sbjct: 1 MTKKELISAVAQKAGLKKAAAEKAVNAAI-ETVVEAISKGERVAIPGFGIFNIRERKERK 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P K I + + V F A K LKE +N
Sbjct: 60 GRNPRTGKEIKIPARKVVAFTAAKALKEAVNK 91
>gi|52421248|ref|YP_087160.1| DNA binding protein HU [Bacteroides fragilis YCH46]
gi|52218769|dbj|BAD51361.1| DNA binding protein HU [Bacteroides fragilis YCH46]
Length = 90
Score = 70.6 bits (172), Expect = 7e-11, Method: Composition-based stats.
Identities = 27/85 (31%), Positives = 46/85 (54%), Gaps = 2/85 (2%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K LI +A + +DV+K ++ L+E+++ + V I+ FG+F + AR+
Sbjct: 1 MNKKDLIKVVATET-GFPMKDVQKTIDTFLKELSEEVNKED-VAIKDFGTFKTVIQKARI 58
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKN 85
AR P +++ V EK V F+ KN
Sbjct: 59 ARNPATGELVEVPEKKVLKFKPSKN 83
>gi|317180599|dbj|BAJ58385.1| dna-binding protein hu [Helicobacter pylori F32]
Length = 94
Score = 70.6 bits (172), Expect = 7e-11, Method: Composition-based stats.
Identities = 24/90 (26%), Positives = 47/90 (52%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ I + + + ++ E+ ++ + + AL+ G VE+ GFG F ++ +
Sbjct: 1 MNKAEFIDLVKEAGKYNSKREAEEAISAFILAVETALSRGESVELVGFGKFETAEQKGKE 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
+ P + K E+K VP F+ GK LK+++
Sbjct: 61 GKVPGSDKTYKTEDKRVPKFKPGKILKQKV 90
>gi|53715708|ref|YP_101700.1| HU family DNA-binding protein [Bacteroides fragilis YCH46]
gi|60683646|ref|YP_213790.1| putative histone-like DNA-binding protein HU4 [Bacteroides
fragilis NCTC 9343]
gi|253566476|ref|ZP_04843929.1| HU family DNA-binding protein [Bacteroides sp. 3_2_5]
gi|265767345|ref|ZP_06095011.1| integration host factor, alpha subunit [Bacteroides sp. 2_1_16]
gi|52218573|dbj|BAD51166.1| DNA binding protein HU family [Bacteroides fragilis YCH46]
gi|60495080|emb|CAH09899.1| putative histone-like DNA-binding protein HU4 [Bacteroides
fragilis NCTC 9343]
gi|251944648|gb|EES85123.1| HU family DNA-binding protein [Bacteroides sp. 3_2_5]
gi|263252650|gb|EEZ24162.1| integration host factor, alpha subunit [Bacteroides sp. 2_1_16]
gi|301165158|emb|CBW24728.1| putative histone-like DNA-binding protein HU4 [Bacteroides
fragilis 638R]
Length = 96
Score = 70.6 bits (172), Expect = 7e-11, Method: Composition-based stats.
Identities = 25/86 (29%), Positives = 45/86 (52%), Gaps = 1/86 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K LI +IA K+ L + + +V ++E + +AL G V + GFG+F V++R AR
Sbjct: 1 MKKIDLIRSIAVKS-NLKKEQIAIVVEGVMEAIAEALHQGESVTLVGFGTFEVKERKARK 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNL 86
+++++ K F+ G +
Sbjct: 60 GYNLSTGEIMTIPGKKTVRFKPGAKM 85
>gi|148244693|ref|YP_001219387.1| integration host factor, beta subunit [Candidatus Vesicomyosocius
okutanii HA]
gi|146326520|dbj|BAF61663.1| integration host factor, beta subunit [Candidatus Vesicomyosocius
okutanii HA]
Length = 92
Score = 70.6 bits (172), Expect = 7e-11, Method: Composition-based stats.
Identities = 38/92 (41%), Positives = 50/92 (54%), Gaps = 1/92 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K LI + L+ D + V ++LEE+TQ + +G VEIRGFG F + R AR
Sbjct: 1 MKKPDLILN-LSNSSNLSKTDAKIAVEVILEELTQGIVSGEGVEIRGFGGFYKKYRKARQ 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
P + V EK VPFF+ GK LKE +N
Sbjct: 60 GINPKTSERTEVSEKFVPFFKPGKFLKEIINK 91
>gi|144898899|emb|CAM75763.1| Bacterial nucleoid DNA-binding protein [Magnetospirillum
gryphiswaldense MSR-1]
Length = 87
Score = 70.6 bits (172), Expect = 8e-11, Method: Composition-based stats.
Identities = 23/88 (26%), Positives = 40/88 (45%), Gaps = 1/88 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+++ I ++ V+ L+ + + + GR + GFG+FS +R AR
Sbjct: 1 MSKTAISKAIRTATS-CTAAQADEAVDALVATILDGVKSEGRFRMIGFGTFSKSERPARQ 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKE 88
R P K I + F+A +LK+
Sbjct: 60 GRNPQTGKTIEIAASSTIKFKASSSLKK 87
>gi|317154852|ref|YP_004122900.1| histone family protein DNA-binding protein [Desulfovibrio
aespoeensis Aspo-2]
gi|316945103|gb|ADU64154.1| histone family protein DNA-binding protein [Desulfovibrio
aespoeensis Aspo-2]
Length = 95
Score = 70.6 bits (172), Expect = 8e-11, Method: Composition-based stats.
Identities = 21/90 (23%), Positives = 42/90 (46%), Gaps = 1/90 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ ++ I ++ N +++ +V +LE M ++ + + GFG F + AR
Sbjct: 5 TKAGIVDYIYERTES-NRAEIKDLVETILEIMKTSIKKDHALLVSGFGKFEAYDKRARKG 63
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + I++ + V FR + + LN
Sbjct: 64 RNPQTSQTITLPPRKVVVFRLSRKFRSELN 93
>gi|42519978|ref|NP_965893.1| HU family DNA-binding protein [Wolbachia endosymbiont of
Drosophila melanogaster]
gi|99034834|ref|ZP_01314748.1| hypothetical protein Wendoof_01000424 [Wolbachia endosymbiont of
Drosophila willistoni TSC#14030-0811.24]
gi|42409715|gb|AAS13827.1| DNA-binding protein, HU family [Wolbachia endosymbiont of
Drosophila melanogaster]
Length = 103
Score = 70.6 bits (172), Expect = 8e-11, Method: Composition-based stats.
Identities = 22/99 (22%), Positives = 45/99 (45%), Gaps = 4/99 (4%)
Query: 1 MIKSSLIGTIAK----KNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKR 56
M K +I + + +N + D+ KI + ++ + L G + + G G+FS
Sbjct: 1 MSKEDIIKQLKEDCSSQNIDITKSDLSKIHDAFIKIIKNELHGKGEIRLHGIGTFSTAIS 60
Query: 57 AARLARAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDS 95
+ R P + ++++V +K F+A + L LN +
Sbjct: 61 QEKQCRNPQSGQIMTVPKKTRVKFKASQTLLSILNEKEK 99
>gi|261837934|gb|ACX97700.1| histone-like DNA-binding protein HU [Helicobacter pylori 51]
gi|317177333|dbj|BAJ55122.1| dna-binding protein hu [Helicobacter pylori F16]
Length = 94
Score = 70.6 bits (172), Expect = 8e-11, Method: Composition-based stats.
Identities = 24/90 (26%), Positives = 45/90 (50%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ I + + + ++ E+ + + AL+ G VE+ GFG F ++ +
Sbjct: 1 MNKAEFIDLVKEAGKYNSKREAEEAITAFTLAVQTALSKGESVELVGFGKFETAEQKGKE 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
+ P + K E+K VP F+ GK LK+++
Sbjct: 61 GKVPGSDKTYKTEDKRVPKFKPGKILKQKV 90
>gi|257459443|ref|ZP_05624552.1| DNA-binding protein HU 1 [Campylobacter gracilis RM3268]
gi|257442868|gb|EEV18002.1| DNA-binding protein HU 1 [Campylobacter gracilis RM3268]
Length = 98
Score = 70.6 bits (172), Expect = 8e-11, Method: Composition-based stats.
Identities = 27/86 (31%), Positives = 41/86 (47%), Gaps = 1/86 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ I +A K L+ +D +V+ LE + + L G + GFGSF + +RAAR
Sbjct: 1 MKKADFIQVVADK-AGLSKKDTVNVVDSALEAIKELLVKGDDISFIGFGSFGIAERAARE 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNL 86
+ P + V F+ GK L
Sbjct: 60 GKVPGTNRTYKSPATKVVKFKVGKQL 85
>gi|11514467|pdb|1EXE|A Chain A, Solution Structure Of A Mutant Of Transcription Factor
1.
gi|11514468|pdb|1EXE|B Chain B, Solution Structure Of A Mutant Of Transcription Factor 1
Length = 99
Score = 70.6 bits (172), Expect = 8e-11, Method: Composition-based stats.
Identities = 23/89 (25%), Positives = 43/89 (48%), Gaps = 1/89 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI IA+ L V K++ + +T+ +A G +V++ GF + R AR
Sbjct: 1 MNKTELIKAIAQDT-GLTQVSVSKMLASFEKIITETVAKGDKVQLTGFLNIKPVARQARK 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKER 89
P Q+ + + + + G++LK+
Sbjct: 60 GFNPQTQEALEIAPSVGVSVKPGESLKKA 88
>gi|46201151|ref|ZP_00055681.2| COG0776: Bacterial nucleoid DNA-binding protein [Magnetospirillum
magnetotacticum MS-1]
Length = 87
Score = 70.6 bits (172), Expect = 8e-11, Method: Composition-based stats.
Identities = 22/88 (25%), Positives = 39/88 (44%), Gaps = 1/88 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+++ I ++ V+ ++ + + GR + GFG+FS +R AR
Sbjct: 1 MSKTAISKAIRTAT-GCTVAQADEAVDAVIATILDGVKTEGRFGLIGFGTFSKSERPARQ 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKE 88
R P K I ++ F+A LK+
Sbjct: 60 GRNPRTGKTIEIKASSTIKFKASSALKK 87
>gi|94986874|ref|YP_594807.1| nucleoid DNA-binding protein [Lawsonia intracellularis
PHE/MN1-00]
gi|94731123|emb|CAJ54485.1| Bacterial nucleoid DNA-binding protein [Lawsonia intracellularis
PHE/MN1-00]
Length = 96
Score = 70.2 bits (171), Expect = 8e-11, Method: Composition-based stats.
Identities = 28/91 (30%), Positives = 40/91 (43%), Gaps = 1/91 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K +I I +K N D++ IV LL M QA+ + I GFG F + R
Sbjct: 6 TKVDIIDAIYEKINN-NKADIKNIVETLLSIMKQAIKTDNTLLISGFGKFEAYSKHTRKG 64
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P + I++ + V FR K + LN
Sbjct: 65 RNPQTDEAITLPSRKVIVFRLSKKFRTELNK 95
>gi|255263938|ref|ZP_05343280.1| DNA-binding protein HU [Thalassiobium sp. R2A62]
gi|255106273|gb|EET48947.1| DNA-binding protein HU [Thalassiobium sp. R2A62]
Length = 95
Score = 70.2 bits (171), Expect = 8e-11, Method: Composition-based stats.
Identities = 21/91 (23%), Positives = 41/91 (45%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ L+ +A++ + + ++ + +T ++ GG V + G G R+R R+
Sbjct: 5 MTKTQLVAALAEEMGA-DKKAAGAALDAVCNLITTEVSGGGAVTLPGVGKIYCRERPERM 63
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + I + V K LK+ +N
Sbjct: 64 VRNPATGEQIKKDADKVVKMTIAKALKDSVN 94
>gi|291276956|ref|YP_003516728.1| DNA-binding HU-like protein [Helicobacter mustelae 12198]
gi|290964150|emb|CBG39995.1| DNA-binding protein HU homolog [Helicobacter mustelae 12198]
Length = 93
Score = 70.2 bits (171), Expect = 8e-11, Method: Composition-based stats.
Identities = 21/93 (22%), Positives = 42/93 (45%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ + + + +D E ++ ++ + AL VE+ GFG F + +
Sbjct: 1 MNKAQFVDLVKEAGAYATKKDAEVAIDAFVKAVENALTKKESVELVGFGKFETVLQKGKE 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSP 93
+ P + K ++ VP F+ GK LK+ ++
Sbjct: 61 GKVPGSDKSYKTADRFVPKFKPGKGLKDLVSKK 93
>gi|254779192|ref|YP_003057297.1| Histone-like DNA-binding protein HU [Helicobacter pylori B38]
gi|308184622|ref|YP_003928755.1| DNA-binding protein HU [Helicobacter pylori SJM180]
gi|254001103|emb|CAX29058.1| Histone-like DNA-binding protein HU [Helicobacter pylori B38]
gi|308060542|gb|ADO02438.1| DNA-binding protein HU [Helicobacter pylori SJM180]
Length = 94
Score = 70.2 bits (171), Expect = 8e-11, Method: Composition-based stats.
Identities = 24/90 (26%), Positives = 46/90 (51%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ I + + + ++ E+ ++ + AL+ G VE+ GFG F ++ +
Sbjct: 1 MNKAEFIDLVKEAGKYSSKREAEEAISAFTLAVETALSKGESVELIGFGKFETAEQKGKE 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
+ P + K E+K VP F+ GK LK+++
Sbjct: 61 GKVPGSDKTYKTEDKRVPKFKPGKILKQKV 90
>gi|254885106|ref|ZP_05257816.1| DNA binding protein HU [Bacteroides sp. 4_3_47FAA]
gi|254837899|gb|EET18208.1| DNA binding protein HU [Bacteroides sp. 4_3_47FAA]
Length = 90
Score = 70.2 bits (171), Expect = 8e-11, Method: Composition-based stats.
Identities = 28/86 (32%), Positives = 47/86 (54%), Gaps = 2/86 (2%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI +A+K ++V +I++ +E++Q L V I+ FG+F + AR+
Sbjct: 1 MNKTDLIKMVAEK-ANKPTKEVAEIIDSFFKELSQNLREKD-VSIKDFGTFKKIIQPARI 58
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNL 86
AR P + + V EK V F+ KN+
Sbjct: 59 ARNPATGEPVEVPEKEVVKFKPSKNI 84
>gi|325269256|ref|ZP_08135875.1| SPBc2 prophage-derived DNA-binding protein HU 2 [Prevotella
multiformis DSM 16608]
gi|324988485|gb|EGC20449.1| SPBc2 prophage-derived DNA-binding protein HU 2 [Prevotella
multiformis DSM 16608]
Length = 97
Score = 70.2 bits (171), Expect = 8e-11, Method: Composition-based stats.
Identities = 23/90 (25%), Positives = 44/90 (48%), Gaps = 1/90 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M I +A + + +++V ++E M ++ G V + GFG+F V+KR R+
Sbjct: 1 MNNKEFIAELASRT-GYTQDESQRMVKSVIELMGKSFEAGDPVSVSGFGTFEVKKRLERV 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
P + + V K+V F+ N+K ++
Sbjct: 60 MVNPSTGQRMLVPPKLVLNFKPAANIKGQV 89
>gi|304321185|ref|YP_003854828.1| DNA-binding protein HU [Parvularcula bermudensis HTCC2503]
gi|303300087|gb|ADM09686.1| DNA-binding protein HU [Parvularcula bermudensis HTCC2503]
Length = 95
Score = 70.2 bits (171), Expect = 9e-11, Method: Composition-based stats.
Identities = 24/92 (26%), Positives = 42/92 (45%), Gaps = 4/92 (4%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALA---NGGRVEIRGFGSFSVRKRA 57
M K+ I +A ++ + +++V ++ E+ L G+ I FG+F++ KR
Sbjct: 1 MSKAEFISNVAAA-GDMSNAEAKRMVELVFGEIEAGLKRAKKDGKYTIGTFGTFTITKRP 59
Query: 58 ARLARAPLAQKVISVEEKMVPFFRAGKNLKER 89
AR R P + I ++ FR NLK
Sbjct: 60 ARKGRNPRTGEEIKIKASKSLRFRPSSNLKAA 91
>gi|15807733|ref|NP_285388.1| DNA-binding protein HB [Deinococcus radiodurans R1]
gi|6460544|gb|AAF12250.1|AE001862_76 DNA-binding protein HB [Deinococcus radiodurans R1]
Length = 137
Score = 70.2 bits (171), Expect = 9e-11, Method: Composition-based stats.
Identities = 23/85 (27%), Positives = 41/85 (48%), Gaps = 1/85 (1%)
Query: 3 KSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLAR 62
K+ L+ +A + L + E+ ++ +LE + AL +G V + G G+ SV++ AAR
Sbjct: 51 KTQLVEMVADQT-GLTKKQSEEAISSMLECVVSALQSGKSVGLPGLGTLSVKETAARTGV 109
Query: 63 APLAQKVISVEEKMVPFFRAGKNLK 87
P + I + F+ LK
Sbjct: 110 RPGTSEKIQIPAGKKVAFKVASTLK 134
>gi|32035258|ref|ZP_00135276.1| COG0776: Bacterial nucleoid DNA-binding protein [Actinobacillus
pleuropneumoniae serovar 1 str. 4074]
gi|126208092|ref|YP_001053317.1| integration host factor subunit alpha [Actinobacillus
pleuropneumoniae L20]
gi|165976025|ref|YP_001651618.1| integration host factor subunit alpha [Actinobacillus
pleuropneumoniae serovar 3 str. JL03]
gi|190149925|ref|YP_001968450.1| integration host factor, alpha chain [Actinobacillus
pleuropneumoniae serovar 7 str. AP76]
gi|303251009|ref|ZP_07337196.1| integration host factor, alpha chain [Actinobacillus
pleuropneumoniae serovar 6 str. Femo]
gi|303252240|ref|ZP_07338408.1| integration host factor, alpha chain [Actinobacillus
pleuropneumoniae serovar 2 str. 4226]
gi|307245471|ref|ZP_07527559.1| Integration host factor subunit alpha [Actinobacillus
pleuropneumoniae serovar 1 str. 4074]
gi|307247585|ref|ZP_07529629.1| Integration host factor subunit alpha [Actinobacillus
pleuropneumoniae serovar 2 str. S1536]
gi|307249814|ref|ZP_07531791.1| Integration host factor subunit alpha [Actinobacillus
pleuropneumoniae serovar 4 str. M62]
gi|307252164|ref|ZP_07534063.1| Integration host factor subunit alpha [Actinobacillus
pleuropneumoniae serovar 6 str. Femo]
gi|307254425|ref|ZP_07536263.1| Integration host factor subunit alpha [Actinobacillus
pleuropneumoniae serovar 9 str. CVJ13261]
gi|307256636|ref|ZP_07538416.1| Integration host factor subunit alpha [Actinobacillus
pleuropneumoniae serovar 10 str. D13039]
gi|307258884|ref|ZP_07540616.1| Integration host factor subunit alpha [Actinobacillus
pleuropneumoniae serovar 11 str. 56153]
gi|307261070|ref|ZP_07542750.1| Integration host factor subunit alpha [Actinobacillus
pleuropneumoniae serovar 12 str. 1096]
gi|307263249|ref|ZP_07544869.1| Integration host factor subunit alpha [Actinobacillus
pleuropneumoniae serovar 13 str. N273]
gi|322514396|ref|ZP_08067442.1| integration host factor subunit alpha [Actinobacillus ureae ATCC
25976]
gi|166918495|sp|A3MZX6|IHFA_ACTP2 RecName: Full=Integration host factor subunit alpha;
Short=IHF-alpha
gi|226707365|sp|B3H139|IHFA_ACTP7 RecName: Full=Integration host factor subunit alpha;
Short=IHF-alpha
gi|226707366|sp|B0BNN9|IHFA_ACTPJ RecName: Full=Integration host factor subunit alpha;
Short=IHF-alpha
gi|126096884|gb|ABN73712.1| integration host factor, alpha chain [Actinobacillus
pleuropneumoniae serovar 5b str. L20]
gi|165876126|gb|ABY69174.1| integration host factor, alpha chain [Actinobacillus
pleuropneumoniae serovar 3 str. JL03]
gi|189915056|gb|ACE61308.1| integration host factor, alpha chain [Actinobacillus
pleuropneumoniae serovar 7 str. AP76]
gi|302649023|gb|EFL79211.1| integration host factor, alpha chain [Actinobacillus
pleuropneumoniae serovar 2 str. 4226]
gi|302650140|gb|EFL80309.1| integration host factor, alpha chain [Actinobacillus
pleuropneumoniae serovar 6 str. Femo]
gi|306853812|gb|EFM86029.1| Integration host factor subunit alpha [Actinobacillus
pleuropneumoniae serovar 1 str. 4074]
gi|306855950|gb|EFM88109.1| Integration host factor subunit alpha [Actinobacillus
pleuropneumoniae serovar 2 str. S1536]
gi|306858164|gb|EFM90243.1| Integration host factor subunit alpha [Actinobacillus
pleuropneumoniae serovar 4 str. M62]
gi|306860464|gb|EFM92478.1| Integration host factor subunit alpha [Actinobacillus
pleuropneumoniae serovar 6 str. Femo]
gi|306862724|gb|EFM94680.1| Integration host factor subunit alpha [Actinobacillus
pleuropneumoniae serovar 9 str. CVJ13261]
gi|306864884|gb|EFM96787.1| Integration host factor subunit alpha [Actinobacillus
pleuropneumoniae serovar 10 str. D13039]
gi|306867235|gb|EFM99091.1| Integration host factor subunit alpha [Actinobacillus
pleuropneumoniae serovar 11 str. 56153]
gi|306869247|gb|EFN01044.1| Integration host factor subunit alpha [Actinobacillus
pleuropneumoniae serovar 12 str. 1096]
gi|306871466|gb|EFN03190.1| Integration host factor subunit alpha [Actinobacillus
pleuropneumoniae serovar 13 str. N273]
gi|322119712|gb|EFX91762.1| integration host factor subunit alpha [Actinobacillus ureae ATCC
25976]
Length = 98
Score = 70.2 bits (171), Expect = 9e-11, Method: Composition-based stats.
Identities = 25/95 (26%), Positives = 49/95 (51%), Gaps = 1/95 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K L ++ +K + + + V EE+ +L G V++ GFG+FS+R++ AR
Sbjct: 4 TKIELAESLVEK-CGFDKRIAKLFVEQFFEEIRSSLEKGEEVKLSGFGNFSLREKNARPG 62
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDST 96
R P + ++V + V F+ G+ L++R+ +
Sbjct: 63 RNPKTGETVAVTARRVVVFKPGQKLRDRVENVKVK 97
>gi|317011056|gb|ADU84803.1| DNA-binding protein HU [Helicobacter pylori SouthAfrica7]
Length = 94
Score = 70.2 bits (171), Expect = 9e-11, Method: Composition-based stats.
Identities = 26/90 (28%), Positives = 47/90 (52%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ I + + + ++ E+ +N + AL+ G VE+ GFG F ++ +
Sbjct: 1 MNKAEFIDLVKEAGKYNSKREAEEAINAFTLAVETALSKGESVELIGFGKFETVEQKGKE 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
+ P + K E+K VP F+AGK LK+++
Sbjct: 61 GKVPGSDKTYKTEDKRVPKFKAGKILKQKV 90
>gi|56416375|ref|YP_153449.1| hypothetical protein AM006 [Anaplasma marginale str. St. Maries]
gi|222474746|ref|YP_002563161.1| presumptive integration host factor alpha-subunit (ihfA)
[Anaplasma marginale str. Florida]
gi|254994605|ref|ZP_05276795.1| presumptive integration host factor alpha-subunit (ihfA)
[Anaplasma marginale str. Mississippi]
gi|255002715|ref|ZP_05277679.1| presumptive integration host factor alpha-subunit (ihfA)
[Anaplasma marginale str. Puerto Rico]
gi|255003844|ref|ZP_05278645.1| presumptive integration host factor alpha-subunit (ihfA)
[Anaplasma marginale str. Virginia]
gi|56387607|gb|AAV86194.1| hypothetical protein AM006 [Anaplasma marginale str. St. Maries]
gi|222418882|gb|ACM48905.1| presumptive integration host factor alpha-subunit (ihfA)
[Anaplasma marginale str. Florida]
Length = 98
Score = 70.2 bits (171), Expect = 9e-11, Method: Composition-based stats.
Identities = 24/94 (25%), Positives = 45/94 (47%), Gaps = 1/94 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
++ L I + ++ +D +V +L+EM +L GG ++I FG+F V ++ R+
Sbjct: 6 TRARLADEI-NREIGISREDALVLVGEILDEMVSSLVRGGLLKISSFGTFKVIRKKERIG 64
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDS 95
R P + V+E F +K +N +S
Sbjct: 65 RNPKTLEQFIVKEHNTVTFCPSVTMKRLINGEES 98
>gi|73666740|ref|YP_302756.1| histone-like DNA-binding protein [Ehrlichia canis str. Jake]
gi|72393881|gb|AAZ68158.1| Histone-like bacterial DNA-binding protein [Ehrlichia canis str.
Jake]
Length = 100
Score = 70.2 bits (171), Expect = 9e-11, Method: Composition-based stats.
Identities = 27/94 (28%), Positives = 45/94 (47%), Gaps = 1/94 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
KS + I K+ L+ +D IV +L+EM AL ++I FG+F K+ AR+
Sbjct: 6 TKSKIAEVI-NKDVGLSREDAASIVGEVLDEMINALVRDHILKISSFGTFKSYKKKARMG 64
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDS 95
R P + ++E+ F +K +N+ D
Sbjct: 65 RNPKTSEAFVIKERNTVSFYPSILVKHSINNDDG 98
>gi|304382113|ref|ZP_07364624.1| DNA-binding protein HU [Prevotella marshii DSM 16973]
gi|304336711|gb|EFM02936.1| DNA-binding protein HU [Prevotella marshii DSM 16973]
Length = 99
Score = 70.2 bits (171), Expect = 9e-11, Method: Composition-based stats.
Identities = 29/100 (29%), Positives = 48/100 (48%), Gaps = 2/100 (2%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQA-LANGGRVEIRGFGSFSVRKRAAR 59
M K+ +I IA L +DV V +E + Q+ L V +RGFGSF V+ RA +
Sbjct: 1 MTKADIINEIAA-TTGLPKKDVSTTVEAFMETIKQSLLDKRENVYLRGFGSFIVKHRAEK 59
Query: 60 LARAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDSTLSN 99
AR I++ P F+ K+ +++ + T ++
Sbjct: 60 TARNISKNTTITIAAHDFPGFKPAKSFIQKMKGEEITEND 99
>gi|289548636|ref|YP_003473624.1| histone family protein DNA-binding protein [Thermocrinis albus
DSM 14484]
gi|289182253|gb|ADC89497.1| histone family protein DNA-binding protein [Thermocrinis albus
DSM 14484]
Length = 95
Score = 70.2 bits (171), Expect = 9e-11, Method: Composition-based stats.
Identities = 22/95 (23%), Positives = 48/95 (50%), Gaps = 1/95 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M + +LI ++++ K++ +D K+V ++E M + L ++E+R FG F + K R
Sbjct: 1 MNRENLIRRVSEEL-KVSREDARKLVRGIVESMVEVLIQHRKLELRNFGVFRIGKIRGRF 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDS 95
+ P + V E F+ +++ ++N +
Sbjct: 60 VKNPRTGVEMYVAESYTVRFKPSRHVIRKINGENQ 94
>gi|208434749|ref|YP_002266415.1| DNA-binding protein HU [Helicobacter pylori G27]
gi|208432678|gb|ACI27549.1| DNA-binding protein HU [Helicobacter pylori G27]
gi|261839347|gb|ACX99112.1| histone-like DNA-binding protein HU (hup) [Helicobacter pylori
52]
Length = 94
Score = 70.2 bits (171), Expect = 9e-11, Method: Composition-based stats.
Identities = 24/90 (26%), Positives = 46/90 (51%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ I + + + ++ E+ ++ + AL+ G VE+ GFG F ++ +
Sbjct: 1 MNKAEFIDLVKEAGKYNSKREAEEAISAFTLAVQTALSKGESVELVGFGKFETAEQKGKE 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
+ P + K E+K VP F+ GK LK+++
Sbjct: 61 GKVPGSDKTYKTEDKRVPKFKPGKILKQKV 90
>gi|298480649|ref|ZP_06998845.1| DNA-binding protein HU [Bacteroides sp. D22]
gi|298273083|gb|EFI14648.1| DNA-binding protein HU [Bacteroides sp. D22]
Length = 93
Score = 70.2 bits (171), Expect = 1e-10, Method: Composition-based stats.
Identities = 27/94 (28%), Positives = 45/94 (47%), Gaps = 1/94 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI IA+++ + V +V +E + +++ G V +RGFGSF +++RA R+
Sbjct: 1 MTKAELITRIAQQS-GIEKTIVMTVVEAFMENVKESMVAGNDVFLRGFGSFVIKRRAKRV 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSPD 94
AR I V P F+ K +
Sbjct: 60 ARNISENTTIVVPAHFFPAFKPAKTFLNAVKEGK 93
>gi|237707812|ref|ZP_04538293.1| DNA binding protein HU [Bacteroides sp. 9_1_42FAA]
gi|229458140|gb|EEO63861.1| DNA binding protein HU [Bacteroides sp. 9_1_42FAA]
Length = 90
Score = 70.2 bits (171), Expect = 1e-10, Method: Composition-based stats.
Identities = 28/86 (32%), Positives = 47/86 (54%), Gaps = 2/86 (2%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI +A+K ++V +I++ +E++Q L V I+ FG+F + AR+
Sbjct: 1 MNKTDLIKMVAEK-ANKPTKEVTEIIDSFFKELSQNLREKD-VSIKDFGTFKKIIQPARI 58
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNL 86
AR P + + V EK V F+ KN+
Sbjct: 59 ARNPATGEPVEVPEKEVVKFKPSKNI 84
>gi|332827120|gb|EGJ99905.1| hypothetical protein HMPREF9455_03778 [Dysgonomonas gadei ATCC
BAA-286]
Length = 96
Score = 70.2 bits (171), Expect = 1e-10, Method: Composition-based stats.
Identities = 22/94 (23%), Positives = 47/94 (50%), Gaps = 1/94 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M LI +AK+ + +++ + + L +G + I+GFG F +K+ R+
Sbjct: 1 MTNQELIAALAKRL-GWTQRQTSEVLEATVSIINSNLEDGNSINIQGFGLFETKKKGERI 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSPD 94
+ P++++ V K+ FR G+ +K+ L + +
Sbjct: 60 SVNPVSKQRFLVPPKISLAFRPGQTIKDNLKNLE 93
>gi|325168608|ref|YP_004280398.1| DNA binding protein [Agrobacterium sp. H13-3]
gi|325064331|gb|ADY68020.1| DNA binding protein [Agrobacterium sp. H13-3]
Length = 92
Score = 69.8 bits (170), Expect = 1e-10, Method: Composition-based stats.
Identities = 25/88 (28%), Positives = 36/88 (40%), Gaps = 1/88 (1%)
Query: 5 SLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLARAP 64
++ IA + L + IV + +T A +G I GFG F ++ R AR P
Sbjct: 6 EIVEKIASEQ-NLTKAQAKSIVETVFASITTAATSGAETSIPGFGKFKIKDTPEREARNP 64
Query: 65 LAQKVISVEEKMVPFFRAGKNLKERLNS 92
I V F+ K LK+ LN
Sbjct: 65 ATGATIKVAAAKKLTFQPAKALKDVLNK 92
>gi|109947731|ref|YP_664959.1| histon like DNA-binding protein HU [Helicobacter acinonychis str.
Sheeba]
gi|109714952|emb|CAJ99960.1| histon like DNA-binding protein HU [Helicobacter acinonychis str.
Sheeba]
Length = 94
Score = 69.8 bits (170), Expect = 1e-10, Method: Composition-based stats.
Identities = 25/94 (26%), Positives = 48/94 (51%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ I + + + ++ E+++N + AL+ G VE+ GFG F ++ +
Sbjct: 1 MNKAEFIDLVKEVGEFNSKREAEEVINAFTLAVETALSKGESVELIGFGKFETAEQKGKE 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSPD 94
+ P + K ++K VP F+AGK LK+++
Sbjct: 61 GKVPGSGKTYKTKDKRVPKFKAGKILKQKVEKGK 94
>gi|83309465|ref|YP_419729.1| nucleoid DNA-binding protein [Magnetospirillum magneticum AMB-1]
gi|82944306|dbj|BAE49170.1| Bacterial nucleoid DNA-binding protein [Magnetospirillum
magneticum AMB-1]
Length = 89
Score = 69.8 bits (170), Expect = 1e-10, Method: Composition-based stats.
Identities = 25/90 (27%), Positives = 38/90 (42%), Gaps = 1/90 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS++ I ++ + V +L + + + GR + GFGSFS +R AR
Sbjct: 1 MSKSAMSKAI-RQAAGCTVAQADAAVEAVLATIVEGVKTEGRFSLIGFGSFSKSERPARQ 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P K I + F LK+ L
Sbjct: 60 GRNPRTGKTIDIAASTSIKFSTSAALKKSL 89
>gi|254293751|ref|YP_003059774.1| histone family protein DNA-binding protein [Hirschia baltica ATCC
49814]
gi|254042282|gb|ACT59077.1| histone family protein DNA-binding protein [Hirschia baltica ATCC
49814]
Length = 103
Score = 69.8 bits (170), Expect = 1e-10, Method: Composition-based stats.
Identities = 20/90 (22%), Positives = 43/90 (47%), Gaps = 1/90 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
+ ++ ++ + + L QD + +LE + + L V++ FG+F VR++ AR+
Sbjct: 6 ITRADIVDKLVSE-VGLTRQDSSDYLERVLEMVCEELVADNSVKLARFGNFVVRRKNARV 64
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P K + + V F+ ++ R+
Sbjct: 65 GRNPKTGKEAPITARRVVTFKPSPLMRRRV 94
>gi|315586499|gb|ADU40880.1| DNA-binding protein HU [Helicobacter pylori 35A]
Length = 94
Score = 69.8 bits (170), Expect = 1e-10, Method: Composition-based stats.
Identities = 24/90 (26%), Positives = 47/90 (52%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ I + + + ++ E+ ++ + + AL+ G VE+ GFG F ++ +
Sbjct: 1 MNKAEFIDLVKEAGKYNSKREAEEAISAFILAVETALSKGESVELVGFGKFETAEQKGKE 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
+ P + K E+K VP F+ GK LK+++
Sbjct: 61 GKVPGSDKTYKTEDKRVPKFKPGKILKQKV 90
>gi|15645454|ref|NP_207628.1| histone-like DNA-binding protein HU (hup) [Helicobacter pylori
26695]
gi|3913400|sp|O25506|DBH_HELPY RecName: Full=DNA-binding protein HU
gi|2313970|gb|AAD07885.1| histone-like DNA-binding protein HU (hup) [Helicobacter pylori
26695]
Length = 94
Score = 69.8 bits (170), Expect = 1e-10, Method: Composition-based stats.
Identities = 24/90 (26%), Positives = 46/90 (51%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ I + + + ++ E+ ++ + AL+ G VE+ GFG F ++ +
Sbjct: 1 MNKAEFIDLVKEAGKYNSKREAEEAISAFTLAVETALSKGESVELIGFGKFETAEQKGKE 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
+ P + K E+K VP F+ GK LK+++
Sbjct: 61 GKVPGSDKTYKTEDKRVPKFKPGKTLKQKV 90
>gi|282890554|ref|ZP_06299077.1| hypothetical protein pah_c022o145 [Parachlamydia acanthamoebae str.
Hall's coccus]
gi|281499551|gb|EFB41847.1| hypothetical protein pah_c022o145 [Parachlamydia acanthamoebae str.
Hall's coccus]
Length = 102
Score = 69.8 bits (170), Expect = 1e-10, Method: Composition-based stats.
Identities = 29/91 (31%), Positives = 49/91 (53%), Gaps = 2/91 (2%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K LI +IA++ +++ DV ++ L+ MT+ALA G R+E R FG F V +R ++
Sbjct: 11 MTKKKLINSIAQE-KQIHPNDVRNVIQAFLDRMTEALAEGERLEFRDFGVFEVVERKQKI 69
Query: 61 ARAPLAQK-VISVEEKMVPFFRAGKNLKERL 90
R P I + + F GK +++ +
Sbjct: 70 GRNPKNAAVPIIIPARSAVKFTPGKKMRKLI 100
>gi|325989776|ref|YP_004249475.1| Histone-like DNA-binding superfamily protein HimA [Mycoplasma
suis KI3806]
gi|323574861|emb|CBZ40521.1| Histone-like DNA-binding superfamily protein HimA/HU/Integration
host factor (himA/hup_1) [Mycoplasma suis]
Length = 102
Score = 69.8 bits (170), Expect = 1e-10, Method: Composition-based stats.
Identities = 28/88 (31%), Positives = 41/88 (46%), Gaps = 1/88 (1%)
Query: 3 KSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLAR 62
K LI +A K +V ++ + + L G+V + FGSF V KR+AR
Sbjct: 4 KDELIKHLADK-CGCTQNNVASVLREYQYLILENLKKEGKVNVLEFGSFEVVKRSARTGV 62
Query: 63 APLAQKVISVEEKMVPFFRAGKNLKERL 90
P + I + EK VP +A K KE +
Sbjct: 63 NPQTKAKIDIPEKEVPRLKASKKFKEFV 90
>gi|295085994|emb|CBK67517.1| Bacterial nucleoid DNA-binding protein [Bacteroides xylanisolvens
XB1A]
Length = 95
Score = 69.8 bits (170), Expect = 1e-10, Method: Composition-based stats.
Identities = 22/86 (25%), Positives = 47/86 (54%), Gaps = 1/86 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ +I ++++ ++ + V ++ ++ + AL V +RGFG+FS++KRAA+
Sbjct: 1 MTKADIINRVSEEL-GIDRRTVGLVIESFMKCVKDALGRERSVFLRGFGTFSLKKRAAKK 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNL 86
A+ I + + VP F+ ++
Sbjct: 60 AQNIQQHTTICIPARKVPHFKPSESF 85
>gi|15611841|ref|NP_223492.1| DNA-binding protein HU [Helicobacter pylori J99]
gi|9789720|sp|Q9ZL08|DBH_HELPJ RecName: Full=DNA-binding protein HU
gi|4155341|gb|AAD06354.1| DNA-BINDING PROTEIN HU [Helicobacter pylori J99]
Length = 94
Score = 69.8 bits (170), Expect = 1e-10, Method: Composition-based stats.
Identities = 26/90 (28%), Positives = 46/90 (51%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ I + K + ++ E+ +N + AL+ G VE+ GFG F ++ +
Sbjct: 1 MNKAEFIDLVKKAGKYNSKREAEEAINAFTLAVETALSKGESVELVGFGKFETAEQKGKE 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
+ P + K E+K VP F+ GK LK+++
Sbjct: 61 GKVPGSDKTYKTEDKRVPKFKPGKILKQKV 90
>gi|297621554|ref|YP_003709691.1| Integration host factor subunit alpha (IHF- alpha) [Waddlia
chondrophila WSU 86-1044]
gi|297376855|gb|ADI38685.1| Integration host factor subunit alpha (IHF- alpha) [Waddlia
chondrophila WSU 86-1044]
Length = 110
Score = 69.8 bits (170), Expect = 1e-10, Method: Composition-based stats.
Identities = 27/99 (27%), Positives = 48/99 (48%), Gaps = 2/99 (2%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K LI I+ ++ ++ DV ++ L++MT L NG R+E R FG F V +R ++
Sbjct: 11 TKKKLINAIS-QDKGIHPNDVRHVIQAFLDKMTDCLTNGERLEFRDFGVFEVVERKQKIG 69
Query: 62 RAPLA-QKVISVEEKMVPFFRAGKNLKERLNSPDSTLSN 99
R P I + + F GK +++ + L++
Sbjct: 70 RNPKNASVPIVIPARPAVKFTPGKRMRKLIEKTPEELAS 108
>gi|34540963|ref|NP_905442.1| DNA-binding protein HU [Porphyromonas gingivalis W83]
gi|188995257|ref|YP_001929509.1| putative DNA-binding protein HU [Porphyromonas gingivalis ATCC
33277]
gi|34397278|gb|AAQ66341.1| DNA-binding protein HU [Porphyromonas gingivalis W83]
gi|188594937|dbj|BAG33912.1| putative DNA-binding protein HU [Porphyromonas gingivalis ATCC
33277]
Length = 92
Score = 69.8 bits (170), Expect = 1e-10, Method: Composition-based stats.
Identities = 26/86 (30%), Positives = 48/86 (55%), Gaps = 1/86 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ ++ IA K+ ++ + K+V ++ + +L+ G V +RGFGSF V++RA +
Sbjct: 1 MTKADVVNAIA-KSTGIDKETTLKVVESFMDTIKDSLSEGDNVYLRGFGSFIVKERAEKT 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNL 86
AR Q I + ++ +P F+ K
Sbjct: 60 ARNISKQTTIIIPKRNIPAFKPSKIF 85
>gi|313665448|ref|YP_004047319.1| DNA-binding protein HU [Mycoplasma leachii PG50]
gi|312949333|gb|ADR23929.1| DNA-binding protein HU [Mycoplasma leachii PG50]
Length = 90
Score = 69.8 bits (170), Expect = 1e-10, Method: Composition-based stats.
Identities = 27/90 (30%), Positives = 44/90 (48%), Gaps = 1/90 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K LI N ++ D EK+VN + + +++ L G V + GFG F + +R++R
Sbjct: 1 MTKKELIEE-IIINENISKVDAEKVVNRIFQTISKHLIEGKEVSVAGFGKFVISERSSRE 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
P + I + + F+ K LKE L
Sbjct: 60 GVNPSTGEKIIIPDSRSARFKPAKQLKESL 89
>gi|217032526|ref|ZP_03438017.1| hypothetical protein HPB128_180g25 [Helicobacter pylori B128]
gi|298736540|ref|YP_003729066.1| DNA-binding protein HU-beta [Helicobacter pylori B8]
gi|216945804|gb|EEC24427.1| hypothetical protein HPB128_180g25 [Helicobacter pylori B128]
gi|298355730|emb|CBI66602.1| DNA-binding protein HU-beta [Helicobacter pylori B8]
Length = 94
Score = 69.8 bits (170), Expect = 1e-10, Method: Composition-based stats.
Identities = 24/90 (26%), Positives = 46/90 (51%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ I + + + ++ E+ ++ + AL+ G VE+ GFG F ++ +
Sbjct: 1 MNKAEFIDLVKEAGKYNSKREAEEAISAFTLAVQTALSKGESVELIGFGKFETAEQKGKE 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
+ P + K E+K VP F+ GK LK+++
Sbjct: 61 GKVPGSDKTYKTEDKRVPKFKPGKILKQKV 90
>gi|302343276|ref|YP_003807805.1| histone family protein DNA-binding protein [Desulfarculus baarsii
DSM 2075]
gi|301639889|gb|ADK85211.1| histone family protein DNA-binding protein [Desulfarculus baarsii
DSM 2075]
Length = 101
Score = 69.8 bits (170), Expect = 1e-10, Method: Composition-based stats.
Identities = 23/94 (24%), Positives = 44/94 (46%), Gaps = 1/94 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K +I + ++ +L ++V LE + +LA+ + I GFG F V+ + AR
Sbjct: 4 TKDHIISEVFERT-QLPKSRSREVVETTLEIIKNSLADSDDLLISGFGKFLVKDKRARRG 62
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDS 95
R P + + + + V F+ L++ LN +
Sbjct: 63 RNPQTKADMKLRARKVVVFKTSGVLRKHLNGEED 96
>gi|313202747|ref|YP_004041404.1| histone family protein DNA-binding protein [Paludibacter
propionicigenes WB4]
gi|312442063|gb|ADQ78419.1| histone family protein DNA-binding protein [Paludibacter
propionicigenes WB4]
Length = 90
Score = 69.8 bits (170), Expect = 1e-10, Method: Composition-based stats.
Identities = 25/86 (29%), Positives = 42/86 (48%), Gaps = 1/86 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ ++ IA KN ++ V V +E + +L+ V +RGFGSF +++RA +
Sbjct: 1 MTKADIVNEIA-KNTGIDKVTVLTTVEAFMETVKDSLSKNENVYLRGFGSFVIKQRAEKT 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNL 86
AR I + +P F+ K
Sbjct: 60 ARNISKNTTIIIPAHNIPSFKPAKTF 85
>gi|147678837|ref|YP_001213052.1| nucleoid DNA-binding protein [Pelotomaculum thermopropionicum SI]
gi|146274934|dbj|BAF60683.1| bacterial nucleoid DNA-binding protein [Pelotomaculum
thermopropionicum SI]
Length = 89
Score = 69.8 bits (170), Expect = 1e-10, Method: Composition-based stats.
Identities = 18/90 (20%), Positives = 38/90 (42%), Gaps = 1/90 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K L+ +A + + + +++ L + + + G V G G+F R R
Sbjct: 1 MRKYELVRLLAAET-GVTQGQAKAVLDALPDVVLSLVQAGHPVRFAGLGTFQAVTRQPRK 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
AR + + V + + FRA + ++ +
Sbjct: 60 ARNLQTGEPVMVPARRMLSFRAERKYRKGV 89
>gi|94967113|ref|YP_589161.1| histone-like DNA-binding protein [Candidatus Koribacter
versatilis Ellin345]
gi|94549163|gb|ABF39087.1| histone-like DNA-binding protein [Candidatus Koribacter
versatilis Ellin345]
Length = 98
Score = 69.8 bits (170), Expect = 1e-10, Method: Composition-based stats.
Identities = 22/90 (24%), Positives = 38/90 (42%), Gaps = 1/90 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ L+ +A+ + +++ + + L E + G I G G R AR+
Sbjct: 5 MTKTQLVRHMAESH-EISNKTAAAFLESLAEVAIKETKKNGVFVIPGLGRLVKSNRKARV 63
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P + I + K V FR K K+ +
Sbjct: 64 GRNPQTGEPIKIPAKTVVKFRVAKAAKDSI 93
>gi|207092268|ref|ZP_03240055.1| dna-binding protein hu [Helicobacter pylori HPKX_438_AG0C1]
gi|210135035|ref|YP_002301474.1| histone-like DNA-binding protein hu [Helicobacter pylori P12]
gi|308182995|ref|YP_003927122.1| DNA-binding protein HU [Helicobacter pylori PeCan4]
gi|210133003|gb|ACJ07994.1| histone-like DNA-binding protein hu [Helicobacter pylori P12]
gi|297380038|gb|ADI34925.1| DNA-binding protein HU [Helicobacter pylori v225d]
gi|308063375|gb|ADO05262.1| DNA-binding protein HU [Helicobacter pylori Sat464]
gi|308065180|gb|ADO07072.1| DNA-binding protein HU [Helicobacter pylori PeCan4]
gi|317009154|gb|ADU79734.1| DNA-binding protein HU [Helicobacter pylori India7]
gi|317012646|gb|ADU83254.1| DNA-binding protein HU [Helicobacter pylori Lithuania75]
Length = 94
Score = 69.8 bits (170), Expect = 1e-10, Method: Composition-based stats.
Identities = 24/90 (26%), Positives = 46/90 (51%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ I + + + ++ E+ ++ + AL+ G VE+ GFG F ++ +
Sbjct: 1 MNKAEFIDLVKEAGKYNSKREAEEAISAFTLAVETALSKGESVELIGFGKFETAEQKGKE 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
+ P + K E+K VP F+ GK LK+++
Sbjct: 61 GKVPGSDKTYKTEDKRVPKFKPGKILKQKV 90
>gi|198284191|ref|YP_002220512.1| histone family protein DNA-binding protein [Acidithiobacillus
ferrooxidans ATCC 53993]
gi|198248712|gb|ACH84305.1| histone family protein DNA-binding protein [Acidithiobacillus
ferrooxidans ATCC 53993]
Length = 93
Score = 69.8 bits (170), Expect = 1e-10, Method: Composition-based stats.
Identities = 13/71 (18%), Positives = 29/71 (40%)
Query: 22 VEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLARAPLAQKVISVEEKMVPFFR 81
+ + + + + ++ I + R+AR R + I + + V F+
Sbjct: 23 AARFLEAFARTIRAEMHSAEKILIPEVDTLHFTNRSARKGRNLATGEKIQIPARRVVTFK 82
Query: 82 AGKNLKERLNS 92
A K ++R+NS
Sbjct: 83 ATKTFQDRVNS 93
>gi|254457259|ref|ZP_05070687.1| DNA-binding protein HU [Campylobacterales bacterium GD 1]
gi|207086051|gb|EDZ63335.1| DNA-binding protein HU [Campylobacterales bacterium GD 1]
Length = 94
Score = 69.4 bits (169), Expect = 1e-10, Method: Composition-based stats.
Identities = 26/90 (28%), Positives = 43/90 (47%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ + + + E + E +T AL V + GFGSF+ + +
Sbjct: 1 MNKAQFVELVQANGGYKTKVEAELAIKAFTEAVTAALVKKEDVSLVGFGSFAANLQKGKS 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
+ P K + ++KMVP F+AGK LK+R+
Sbjct: 61 GKVPGTDKTYTTQDKMVPKFKAGKGLKDRV 90
>gi|70724874|ref|YP_257083.1| hypothetical protein pSG2GP_12 [Sodalis glossinidius]
gi|85060469|ref|YP_456169.1| DNA-binding protein [Sodalis glossinidius str. 'morsitans']
gi|68697091|emb|CAI59372.1| hypothetical protein pSG2.12 [Sodalis glossinidius]
gi|68697121|emb|CAI59586.1| hypothetical protein pSG2.12 [Sodalis glossinidius]
gi|84780989|dbj|BAE75764.1| DNA-binding protein [Sodalis glossinidius str. 'morsitans']
Length = 78
Score = 69.4 bits (169), Expect = 1e-10, Method: Composition-based stats.
Identities = 23/67 (34%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI + +K+ + +V+ + +T+ALA G V + GFG F V++RA R
Sbjct: 1 MNKSDLINAVIEKS-DITQVKAGYVVSAFVAAITEALAAGESVALSGFGVFGVKERAERS 59
Query: 61 ARAPLAQ 67
R P
Sbjct: 60 GRNPQTG 66
>gi|327312706|ref|YP_004328143.1| DNA-binding protein HU-beta [Prevotella denticola F0289]
gi|326945003|gb|AEA20888.1| DNA-binding protein HU-beta [Prevotella denticola F0289]
Length = 91
Score = 69.4 bits (169), Expect = 1e-10, Method: Composition-based stats.
Identities = 30/92 (32%), Positives = 49/92 (53%), Gaps = 1/92 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI IA L+ D +K ++ E + AL G +V++ GFG+F+V +R A
Sbjct: 1 MNKTELIEKIAA-GAGLSKADAKKALDATTEAIKGALVAGDKVQLVGFGTFAVNERPAHE 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
P ++ I + K V F+AG L + +N+
Sbjct: 60 GINPATKQKIQIAAKKVAKFKAGAELADAVNA 91
>gi|261879549|ref|ZP_06005976.1| DNA-binding protein HU [Prevotella bergensis DSM 17361]
gi|270333775|gb|EFA44561.1| DNA-binding protein HU [Prevotella bergensis DSM 17361]
Length = 92
Score = 69.4 bits (169), Expect = 1e-10, Method: Composition-based stats.
Identities = 30/92 (32%), Positives = 45/92 (48%), Gaps = 1/92 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M I +A + D +K+V L+EEM NG V+I FG+F V+KR R+
Sbjct: 1 MNNKEFIAELALR-AGYTQADTQKMVTYLVEEMGDRFENGDCVQIANFGTFEVKKRLERI 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
P Q+ + V K+V F+ +KE L +
Sbjct: 60 IVNPGTQQRMLVPPKLVLNFKPVAAIKEELKN 91
>gi|253582555|ref|ZP_04859776.1| predicted protein [Fusobacterium varium ATCC 27725]
gi|251835425|gb|EES63965.1| predicted protein [Fusobacterium varium ATCC 27725]
Length = 91
Score = 69.4 bits (169), Expect = 1e-10, Method: Composition-based stats.
Identities = 25/91 (27%), Positives = 36/91 (39%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K I K D E+ L + + L + GFG F V +RA +
Sbjct: 1 MTKKEFINLYFTKGEFKTKTDAERKAAAFLNLIEEVLLKEEEITFLGFGKFKVIERAPKT 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P K + +E K V F+ K L E++
Sbjct: 61 CRNPQTGKKMKIEAKKVVKFKPSKTLSEKIK 91
>gi|54295550|ref|YP_127965.1| hypothetical protein lpl2637 [Legionella pneumophila str. Lens]
gi|54298700|ref|YP_125069.1| integration host factor subunit alpha [Legionella pneumophila
str. Paris]
gi|148358554|ref|YP_001249761.1| integration host factor subunit alpha [Legionella pneumophila
str. Corby]
gi|296108357|ref|YP_003620058.1| integration host factor (IHF) alpha subunit [Legionella
pneumophila 2300/99 Alcoy]
gi|81679131|sp|Q5WT88|IHFA_LEGPL RecName: Full=Integration host factor subunit alpha;
Short=IHF-alpha
gi|81679385|sp|Q5X1H9|IHFA_LEGPA RecName: Full=Integration host factor subunit alpha;
Short=IHF-alpha
gi|172047871|sp|A5IAL5|IHFA_LEGPC RecName: Full=Integration host factor subunit alpha;
Short=IHF-alpha
gi|53752485|emb|CAH13917.1| hypothetical protein lpp2764 [Legionella pneumophila str. Paris]
gi|53755382|emb|CAH16878.1| hypothetical protein lpl2637 [Legionella pneumophila str. Lens]
gi|148280327|gb|ABQ54415.1| integration host factor (IHF) alpha subunit [Legionella
pneumophila str. Corby]
gi|295650259|gb|ADG26106.1| integration host factor (IHF) alpha subunit [Legionella
pneumophila 2300/99 Alcoy]
gi|307611586|emb|CBX01268.1| hypothetical protein LPW_29661 [Legionella pneumophila 130b]
Length = 97
Score = 69.4 bits (169), Expect = 1e-10, Method: Composition-based stats.
Identities = 30/93 (32%), Positives = 49/93 (52%), Gaps = 4/93 (4%)
Query: 1 MI---KSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRA 57
M K+ + T+ + KLN +++V EE+ AL NG V++ GFG+F++R +
Sbjct: 1 MNALSKAIMAETLCDEL-KLNKPVAKEMVENFFEELRHALENGQHVKLSGFGNFTLRDKP 59
Query: 58 ARLARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R R P + I VE + V F+ G LK ++
Sbjct: 60 QRPGRNPKTGEEIPVEARRVVTFKPGLKLKTKI 92
>gi|300727620|ref|ZP_07061009.1| HimA protein [Prevotella bryantii B14]
gi|299775140|gb|EFI71743.1| HimA protein [Prevotella bryantii B14]
Length = 103
Score = 69.4 bits (169), Expect = 1e-10, Method: Composition-based stats.
Identities = 28/92 (30%), Positives = 51/92 (55%), Gaps = 1/92 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M I +A+++ N +D +K+V +++EMT A + I FG+F V+KR R+
Sbjct: 1 MNNKEFITELAQRS-GYNQRDTQKLVRTVIDEMTDHFAETDIISIPSFGTFEVKKRLERI 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
P +K + V K+V F+ +++KE+L +
Sbjct: 60 VVNPATKKRMLVPPKLVLGFKPVQSIKEQLKN 91
>gi|167950382|ref|ZP_02537456.1| integration host factor, beta subunit [Endoriftia persephone
'Hot96_1+Hot96_2']
Length = 122
Score = 69.4 bits (169), Expect = 1e-10, Method: Composition-based stats.
Identities = 30/67 (44%), Positives = 43/67 (64%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI + K L Y+D+E + ++E+M+QAL++G R+EIRGFGSFS+ R R+
Sbjct: 1 MTKSELIEIVRKDQSHLAYRDIELAIKCMIEQMSQALSSGERIEIRGFGSFSLHYRPPRM 60
Query: 61 ARAPLAQ 67
R P
Sbjct: 61 GRNPKNG 67
>gi|328948273|ref|YP_004365610.1| histone family protein DNA-binding protein [Treponema
succinifaciens DSM 2489]
gi|328448597|gb|AEB14313.1| histone family protein DNA-binding protein [Treponema
succinifaciens DSM 2489]
Length = 108
Score = 69.4 bits (169), Expect = 1e-10, Method: Composition-based stats.
Identities = 31/90 (34%), Positives = 49/90 (54%), Gaps = 2/90 (2%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAAR-L 60
K+ L+ + +N K V+ I+ L ++M + L +G +E+RGFG+F R R R
Sbjct: 7 TKNDLLEAVY-QNTKYEKLAVQTIMENLFDQMKEVLKDGNTIELRGFGTFEARLRKGRQN 65
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
AR P + +SV V FR+G+ LK+ L
Sbjct: 66 ARNPKTGQQLSVAPHYVVAFRSGQELKKAL 95
>gi|254525351|ref|ZP_05137404.1| DNA-binding protein HU-beta [Stenotrophomonas sp. SKA14]
gi|219718467|gb|EED36994.1| DNA-binding protein HU-beta [Stenotrophomonas sp. SKA14]
Length = 71
Score = 69.4 bits (169), Expect = 2e-10, Method: Composition-based stats.
Identities = 26/58 (44%), Positives = 34/58 (58%)
Query: 34 TQALANGGRVEIRGFGSFSVRKRAARLARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
T+AL +G V + GFG+F VR RAAR R P I + P F+AGK LK+ +N
Sbjct: 14 TKALKDGDAVTLVGFGTFQVRDRAARTGRNPKTGDTIKIAASKNPSFKAGKALKDAVN 71
>gi|255534852|ref|YP_003095223.1| DNA-binding protein HU-beta [Flavobacteriaceae bacterium 3519-10]
gi|255341048|gb|ACU07161.1| DNA-binding protein HU-beta [Flavobacteriaceae bacterium 3519-10]
Length = 96
Score = 69.4 bits (169), Expect = 2e-10, Method: Composition-based stats.
Identities = 29/87 (33%), Positives = 45/87 (51%), Gaps = 2/87 (2%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALA-NGGRVEIRGFGSFSVRKRAAR 59
M KS LI +A + + + + + +T L+ G+V + GFG+FSV +RAAR
Sbjct: 1 MNKSELIDAMAN-DAGITKVAAKAALESFISNVTATLSQKDGKVSLVGFGTFSVAERAAR 59
Query: 60 LARAPLAQKVISVEEKMVPFFRAGKNL 86
P +K I + K V F+AG +L
Sbjct: 60 QGINPATKKPIKIAAKTVAKFKAGADL 86
>gi|212704733|ref|ZP_03312861.1| hypothetical protein DESPIG_02796 [Desulfovibrio piger ATCC
29098]
gi|212671860|gb|EEB32343.1| hypothetical protein DESPIG_02796 [Desulfovibrio piger ATCC
29098]
Length = 95
Score = 69.4 bits (169), Expect = 2e-10, Method: Composition-based stats.
Identities = 28/91 (30%), Positives = 44/91 (48%), Gaps = 1/91 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ ++ I + K N DV+ +V LLE M A+ + I GFG F +A+R
Sbjct: 6 TKADIVERIYESTDK-NRVDVKNVVEKLLEIMKSAIKKDNALLISGFGKFEAYDKASRKG 64
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P + I++ + V FR + + LNS
Sbjct: 65 RNPQTDEAITLPPRKVVVFRLSRKFRAELNS 95
>gi|213609081|ref|ZP_03368907.1| integration host factor subunit beta [Salmonella enterica subsp.
enterica serovar Typhi str. E98-2068]
Length = 54
Score = 69.4 bits (169), Expect = 2e-10, Method: Composition-based stats.
Identities = 25/51 (49%), Positives = 32/51 (62%)
Query: 41 GRVEIRGFGSFSVRKRAARLARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R+EIRGFGSFS+ RA R R P + +E K VP F+ GK L++R N
Sbjct: 1 ERIEIRGFGSFSLHYRAPRTGRNPKTGDKVELEGKYVPHFKPGKELRDRAN 51
>gi|86160619|ref|YP_467404.1| histone-like DNA-binding protein [Anaeromyxobacter dehalogenans
2CP-C]
gi|197124716|ref|YP_002136667.1| histone family protein DNA-binding protein [Anaeromyxobacter sp.
K]
gi|220919437|ref|YP_002494741.1| histone family protein DNA-binding protein [Anaeromyxobacter
dehalogenans 2CP-1]
gi|85777130|gb|ABC83967.1| Histone-like DNA-binding protein [Anaeromyxobacter dehalogenans
2CP-C]
gi|196174565|gb|ACG75538.1| histone family protein DNA-binding protein [Anaeromyxobacter sp.
K]
gi|219957291|gb|ACL67675.1| histone family protein DNA-binding protein [Anaeromyxobacter
dehalogenans 2CP-1]
Length = 95
Score = 69.4 bits (169), Expect = 2e-10, Method: Composition-based stats.
Identities = 19/96 (19%), Positives = 40/96 (41%), Gaps = 1/96 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M ++ +A+ +++ V + + E +T+ L G++ + G G+ + R AR+
Sbjct: 1 MTQAQFFQAVAE-GSQVSKAQVRAVFEAVEEVVTKRLKAEGKIPLGGLGAVKLVDRKARI 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDST 96
R P + I + + K LK+ N
Sbjct: 60 GRNPATGEQIKIPARTAIKLTPAKALKDIFNKKAKK 95
>gi|299145604|ref|ZP_07038672.1| putative integration host factor IHF alpha subunit [Bacteroides
sp. 3_1_23]
gi|298516095|gb|EFI39976.1| putative integration host factor IHF alpha subunit [Bacteroides
sp. 3_1_23]
Length = 471
Score = 69.4 bits (169), Expect = 2e-10, Method: Composition-based stats.
Identities = 21/90 (23%), Positives = 38/90 (42%), Gaps = 1/90 (1%)
Query: 4 SSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLARA 63
L +A K+ + +D E V + QAL N V+I+G G+F + +R +
Sbjct: 8 QDLTDLLAAKHS-MTKKDAEAFVKEFFLLIEQALENEKTVKIKGLGTFKLIDVDSRESVN 66
Query: 64 PLAQKVISVEEKMVPFFRAGKNLKERLNSP 93
+ ++ F NL++ +N P
Sbjct: 67 VNTGERFQIKGHTKVSFSPDANLRDTINKP 96
>gi|262276735|ref|ZP_06054528.1| integration host factor subunit beta (IHF-beta) [alpha
proteobacterium HIMB114]
gi|262223838|gb|EEY74297.1| integration host factor subunit beta (IHF-beta) [alpha
proteobacterium HIMB114]
Length = 103
Score = 69.4 bits (169), Expect = 2e-10, Method: Composition-based stats.
Identities = 30/94 (31%), Positives = 51/94 (54%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
+KS ++ + K+ +VE I+ + + ++ AL+ G +EIRG G+F V+K AR A
Sbjct: 7 VKSDIVKDLQGHFQKIPNNNVEHIIESIFKYLSNALSEGRNIEIRGLGTFKVKKMPARNA 66
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDS 95
R P + I +EEK +++ K L R+N
Sbjct: 67 RNPKTGETIQIEEKNKVKWKSSKLLNYRINKDKK 100
>gi|297194088|ref|ZP_06911486.1| DNA-binding protein HU 1 [Streptomyces pristinaespiralis ATCC
25486]
gi|197720925|gb|EDY64833.1| DNA-binding protein HU 1 [Streptomyces pristinaespiralis ATCC
25486]
Length = 93
Score = 69.4 bits (169), Expect = 2e-10, Method: Composition-based stats.
Identities = 27/94 (28%), Positives = 43/94 (45%), Gaps = 2/94 (2%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGG-RVEIRGFGSFSVRKRAAR 59
M +S L+ +A + ++ +D + ++ L E + + +A G +V I GF +F RAAR
Sbjct: 1 MNRSELVAALADR-AEVTRKDADAVLAALAETVGEVVAKGDEKVTIPGFLTFERTHRAAR 59
Query: 60 LARAPLAQKVISVEEKMVPFFRAGKNLKERLNSP 93
AR P I + AG LKE
Sbjct: 60 TARNPQTGDPIQIPAGYSVKVSAGSKLKEAAKGK 93
>gi|325973340|ref|YP_004250404.1| DNA-binding protein [Mycoplasma suis str. Illinois]
gi|323651942|gb|ADX98024.1| DNA-binding protein [Mycoplasma suis str. Illinois]
Length = 102
Score = 69.4 bits (169), Expect = 2e-10, Method: Composition-based stats.
Identities = 28/88 (31%), Positives = 41/88 (46%), Gaps = 1/88 (1%)
Query: 3 KSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLAR 62
K LI +A K +V ++ + + L G+V + FGSF V KR+AR
Sbjct: 4 KDELIKHLADK-CGCTQNNVASVLREYQYLILENLKKEGKVNVLEFGSFEVVKRSARTGI 62
Query: 63 APLAQKVISVEEKMVPFFRAGKNLKERL 90
P + I + EK VP +A K KE +
Sbjct: 63 NPQTKAKIDIPEKEVPRLKASKKFKEFV 90
>gi|52842915|ref|YP_096714.1| integration host factor subunit alpha [Legionella pneumophila
subsp. pneumophila str. Philadelphia 1]
gi|81680386|sp|Q5ZS10|IHFA_LEGPH RecName: Full=Integration host factor subunit alpha;
Short=IHF-alpha
gi|52630026|gb|AAU28767.1| integration host factor (IHF) alpha subunit [Legionella
pneumophila subsp. pneumophila str. Philadelphia 1]
Length = 99
Score = 69.4 bits (169), Expect = 2e-10, Method: Composition-based stats.
Identities = 27/75 (36%), Positives = 42/75 (56%)
Query: 16 KLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLARAPLAQKVISVEEK 75
KLN +++V EE+ AL NG V++ GFG+F++R + R R P + I VE +
Sbjct: 20 KLNKPVAKEMVENFFEELRHALENGQHVKLSGFGNFTLRDKPQRPGRNPKTGEEIPVEAR 79
Query: 76 MVPFFRAGKNLKERL 90
V F+ G LK ++
Sbjct: 80 RVVTFKPGLKLKTKI 94
>gi|303235684|ref|ZP_07322291.1| DNA-binding protein HU [Prevotella disiens FB035-09AN]
gi|302484131|gb|EFL47119.1| DNA-binding protein HU [Prevotella disiens FB035-09AN]
Length = 95
Score = 69.4 bits (169), Expect = 2e-10, Method: Composition-based stats.
Identities = 28/92 (30%), Positives = 44/92 (47%), Gaps = 1/92 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M I +A K + EK+V L+ M +G + GFG+F V+KR R+
Sbjct: 1 MNNKEFIAALANKT-GRTQDETEKLVKTALQAMGDNFESGEPFLVSGFGAFEVKKRMERI 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
P + + V K+V FRA +++KE+L
Sbjct: 60 MVNPGTGQRMLVPPKLVLGFRATQSVKEKLKK 91
>gi|325284314|ref|YP_004256854.1| histone family protein DNA-binding protein [Deinococcus
proteolyticus MRP]
gi|324316378|gb|ADY27491.1| histone family protein DNA-binding protein [Deinococcus
proteolyticus MRP]
Length = 128
Score = 69.4 bits (169), Expect = 2e-10, Method: Composition-based stats.
Identities = 25/87 (28%), Positives = 41/87 (47%), Gaps = 1/87 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K++LI ++ K L Q + + LL + +AL G V + G G+FS+++ AAR
Sbjct: 40 MGKTALIAELSSKT-GLTRQQASGVTDSLLSTVVEALQAGQTVSLPGLGTFSIKETAART 98
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLK 87
P + I + F+ LK
Sbjct: 99 GVKPGTTEKIQIPAGKKVAFKVATGLK 125
>gi|313205318|ref|YP_004043975.1| bacterial nucleoid protein hbs [Paludibacter propionicigenes WB4]
gi|312444634|gb|ADQ80990.1| bacterial nucleoid protein Hbs [Paludibacter propionicigenes WB4]
Length = 90
Score = 69.4 bits (169), Expect = 2e-10, Method: Composition-based stats.
Identities = 24/70 (34%), Positives = 42/70 (60%), Gaps = 1/70 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI IA + L+ D +K ++ +++ ++ AL G +V + GFG+FSV +R+AR
Sbjct: 1 MNKAELINAIAAE-AGLSKADAKKALDAVVKSVSDALVAGDKVSLVGFGTFSVSERSARS 59
Query: 61 ARAPLAQKVI 70
P ++ I
Sbjct: 60 GINPATKQPI 69
>gi|218261010|ref|ZP_03476021.1| hypothetical protein PRABACTJOHN_01685 [Parabacteroides johnsonii
DSM 18315]
gi|218224259|gb|EEC96909.1| hypothetical protein PRABACTJOHN_01685 [Parabacteroides johnsonii
DSM 18315]
Length = 136
Score = 69.4 bits (169), Expect = 2e-10, Method: Composition-based stats.
Identities = 21/93 (22%), Positives = 41/93 (44%), Gaps = 1/93 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K +LI +A++ + +K +N +E +T+ L+ G V I FG + R
Sbjct: 45 TKRALIKELAQRM-ECTDVAAKKFLNSYIELITEKLSEGEGVSIHYFGKLVPHYQTERPG 103
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLNSPD 94
R + + + F+A + L ++LN+
Sbjct: 104 RNLRTGEECKIRARTSVKFKASEILIQKLNTGK 136
>gi|225158968|ref|ZP_03725280.1| histone family protein DNA-binding protein [Opitutaceae bacterium
TAV2]
gi|224802463|gb|EEG20723.1| histone family protein DNA-binding protein [Opitutaceae bacterium
TAV2]
Length = 102
Score = 69.4 bits (169), Expect = 2e-10, Method: Composition-based stats.
Identities = 28/97 (28%), Positives = 50/97 (51%), Gaps = 2/97 (2%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K ++ I +K +++ V M L+ + +AL+ G VE+R FG V++R +R+
Sbjct: 6 TKREIVLEIYEKT-GFPQKEIVTSVQMTLDIIMRALSEGRNVELRNFGVLEVQRRKSRIG 64
Query: 62 RAPLAQK-VISVEEKMVPFFRAGKNLKERLNSPDSTL 97
R P + + + E+ V F++GK LK+ L D
Sbjct: 65 RNPNKPEAEVVIPERAVVKFKSGKILKQLLKKIDIKD 101
>gi|46581589|ref|YP_012397.1| DNA-binding protein HU [Desulfovibrio vulgaris str.
Hildenborough]
gi|120601251|ref|YP_965651.1| histone family protein DNA-binding protein [Desulfovibrio
vulgaris DP4]
gi|46451012|gb|AAS97657.1| DNA-binding protein HU [Desulfovibrio vulgaris str.
Hildenborough]
gi|120561480|gb|ABM27224.1| histone family protein DNA-binding protein [Desulfovibrio
vulgaris DP4]
gi|311235232|gb|ADP88086.1| histone family protein DNA-binding protein [Desulfovibrio
vulgaris RCH1]
Length = 95
Score = 69.4 bits (169), Expect = 2e-10, Method: Composition-based stats.
Identities = 19/74 (25%), Positives = 33/74 (44%), Gaps = 2/74 (2%)
Query: 2 IKSSLIGTIAKKNPKL--NYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAAR 59
K+ + + P + EK + + M +ANG V + G G+ +V +RAAR
Sbjct: 3 TKAEFVAALKDSLPDVFETKVSAEKAYDTFCKIMADGVANGQGVRLPGVGALTVTERAAR 62
Query: 60 LARAPLAQKVISVE 73
R P + I++
Sbjct: 63 TGRNPQTGQTITIP 76
>gi|282601029|ref|ZP_05980488.2| integration host factor, beta subunit [Subdoligranulum variabile
DSM 15176]
gi|282570392|gb|EFB75927.1| integration host factor, beta subunit [Subdoligranulum variabile
DSM 15176]
Length = 91
Score = 69.0 bits (168), Expect = 2e-10, Method: Composition-based stats.
Identities = 26/90 (28%), Positives = 45/90 (50%), Gaps = 1/90 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M +S LI +A + +VEK+++ + + L G +V I GFG F +R+R +
Sbjct: 1 MTRSQLITKVANDT-GMTSGEVEKVMDCIFGTIGDVLKGGDKVTIAGFGRFEMRERQTKN 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
P + +E +P F+A LKE++
Sbjct: 60 FTNPKTKVTSKLEPTAIPGFKASGRLKEKV 89
>gi|301061080|ref|ZP_07201877.1| putative DNA-binding protein HRL53 [delta proteobacterium NaphS2]
gi|300444874|gb|EFK08842.1| putative DNA-binding protein HRL53 [delta proteobacterium NaphS2]
Length = 95
Score = 69.0 bits (168), Expect = 2e-10, Method: Composition-based stats.
Identities = 24/91 (26%), Positives = 45/91 (49%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
+ K+ LI + +K +L + V L E + + L +G V I GFG F V+ + R
Sbjct: 3 ITKNKLIDAVDEKT-ELPKKTATSAVESLFEIIKRTLVSGEDVLISGFGKFVVKDKKKRK 61
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P K + ++ + + F+ L++++N
Sbjct: 62 GRNPETGKGLILDARRIVSFKCSNKLRDKMN 92
>gi|282878889|ref|ZP_06287653.1| DNA-binding protein HU [Prevotella buccalis ATCC 35310]
gi|281298888|gb|EFA91293.1| DNA-binding protein HU [Prevotella buccalis ATCC 35310]
Length = 95
Score = 69.0 bits (168), Expect = 2e-10, Method: Composition-based stats.
Identities = 28/92 (30%), Positives = 44/92 (47%), Gaps = 1/92 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M I ++++ + + V L+EEMT L G + I FG+F V+KR R+
Sbjct: 1 MNNKEFIAELSRR-AGYTQEQTQNYVRTLVEEMTNILGEGESIAIPSFGTFEVKKRMERI 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
P K + V K+V FR ++KE+L
Sbjct: 60 LTNPSTGKKMLVPPKLVLSFRPMPSVKEQLKK 91
>gi|58584829|ref|YP_198402.1| nucleoid DNA-binding protein [Wolbachia endosymbiont strain TRS of
Brugia malayi]
gi|58419145|gb|AAW71160.1| Bacterial nucleoid DNA-binding protein, HupA family [Wolbachia
endosymbiont strain TRS of Brugia malayi]
Length = 103
Score = 69.0 bits (168), Expect = 2e-10, Method: Composition-based stats.
Identities = 22/101 (21%), Positives = 46/101 (45%), Gaps = 4/101 (3%)
Query: 1 MIKSSLIGTI----AKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKR 56
M K +I + + ++ ++ D+ KI + L++ + L G + + G G+FS
Sbjct: 1 MSKEDIINKLKQACSSQDVEITKSDLSKIFDALMKIIKGKLDEEGEIRLHGIGTFSTAIS 60
Query: 57 AARLARAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDSTL 97
+ R P ++++V +K F+A + L LN +
Sbjct: 61 QEKQCRNPQNGEIMTVPQKTRVKFKASQTLLSILNKEKEEV 101
>gi|293373986|ref|ZP_06620327.1| DNA-binding protein HU [Bacteroides ovatus SD CMC 3f]
gi|292631062|gb|EFF49699.1| DNA-binding protein HU [Bacteroides ovatus SD CMC 3f]
Length = 471
Score = 69.0 bits (168), Expect = 2e-10, Method: Composition-based stats.
Identities = 21/90 (23%), Positives = 38/90 (42%), Gaps = 1/90 (1%)
Query: 4 SSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLARA 63
L +A K+ + +D E V + QAL N V+I+G G+F + +R +
Sbjct: 8 QDLTDLLAAKHS-MTKKDAEAFVKEFFLLIEQALENEKTVKIKGLGTFKLIDVDSRESVN 66
Query: 64 PLAQKVISVEEKMVPFFRAGKNLKERLNSP 93
+ ++ F NL++ +N P
Sbjct: 67 VNTGERFQIKGHTKVSFSPDANLRDTINKP 96
>gi|91201933|emb|CAJ74993.1| strongly similar to DNA binding protein HU [Candidatus Kuenenia
stuttgartiensis]
Length = 103
Score = 69.0 bits (168), Expect = 2e-10, Method: Composition-based stats.
Identities = 27/90 (30%), Positives = 46/90 (51%), Gaps = 1/90 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K L+ +A + ++ EK VN +L + Q + V + GFG+FSV++R AR
Sbjct: 1 MNKQELVEYVANECS-VSKTCGEKAVNAVLNGIKQGVKKSNEVRLIGFGTFSVKERKARK 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P VI+++ F G++ K+ +
Sbjct: 60 GRNPQTGAVINIKASKTVKFSVGQDFKKVV 89
>gi|218282473|ref|ZP_03488732.1| hypothetical protein EUBIFOR_01314 [Eubacterium biforme DSM 3989]
gi|218216569|gb|EEC90107.1| hypothetical protein EUBIFOR_01314 [Eubacterium biforme DSM 3989]
Length = 95
Score = 69.0 bits (168), Expect = 2e-10, Method: Composition-based stats.
Identities = 26/91 (28%), Positives = 50/91 (54%), Gaps = 1/91 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K SL T++ + ++ +D V+++ EM+ ALA+ G V+I FG F + R +R+
Sbjct: 6 NKESLTQTLSIQL-NMSKKDAAYAVDLIFNEMSDALASDGHVDITAFGKFEIFDRKSRMG 64
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
P+ ++ + ++ +P FR + LK + N
Sbjct: 65 INPVTKERMMIQATKLPKFRPSQTLKNKCNK 95
>gi|15604988|ref|NP_219772.1| integration host factor alpha-subunit [Chlamydia trachomatis
D/UW-3/CX]
gi|15835156|ref|NP_296915.1| integration host factor beta subunit, putative [Chlamydia
muridarum Nigg]
gi|76788989|ref|YP_328075.1| integration host factor alpha-subunit [Chlamydia trachomatis
A/HAR-13]
gi|166154478|ref|YP_001654596.1| integration host factor alpha-subunit [Chlamydia trachomatis
434/Bu]
gi|166155353|ref|YP_001653608.1| integration host factor alpha-subunit [Chlamydia trachomatis
L2b/UCH-1/proctitis]
gi|237802690|ref|YP_002887884.1| integration host factor alpha-subunit [Chlamydia trachomatis
B/Jali20/OT]
gi|237804612|ref|YP_002888766.1| integration host factor alpha-subunit [Chlamydia trachomatis
B/TZ1A828/OT]
gi|255311068|ref|ZP_05353638.1| integration host factor alpha-subunit [Chlamydia trachomatis
6276]
gi|255317369|ref|ZP_05358615.1| integration host factor alpha-subunit [Chlamydia trachomatis
6276s]
gi|255348627|ref|ZP_05380634.1| integration host factor alpha-subunit [Chlamydia trachomatis 70]
gi|255503167|ref|ZP_05381557.1| integration host factor alpha-subunit [Chlamydia trachomatis 70s]
gi|255506845|ref|ZP_05382484.1| integration host factor alpha-subunit [Chlamydia trachomatis
D(s)2923]
gi|270285328|ref|ZP_06194722.1| integration host factor alpha-subunit [Chlamydia muridarum Nigg]
gi|270289344|ref|ZP_06195646.1| integration host factor alpha-subunit [Chlamydia muridarum Weiss]
gi|301335738|ref|ZP_07223982.1| integration host factor alpha-subunit [Chlamydia trachomatis
L2tet1]
gi|301336725|ref|ZP_07224927.1| integration host factor alpha-subunit [Chlamydia muridarum
MopnTet14]
gi|54036943|sp|P64387|DBH_CHLMU RecName: Full=Probable DNA-binding protein HU
gi|54040776|sp|P64386|DBH_CHLTR RecName: Full=Probable DNA-binding protein HU
gi|3328679|gb|AAC67860.1| Integration Host Factor Alpha [Chlamydia trachomatis D/UW-3/CX]
gi|7190578|gb|AAF39378.1| integration host factor beta subunit, putative [Chlamydia
muridarum Nigg]
gi|76167519|gb|AAX50527.1| integration host factor alpha-subunit [Chlamydia trachomatis
A/HAR-13]
gi|165930466|emb|CAP03959.1| integration host factor alpha-subunit [Chlamydia trachomatis
434/Bu]
gi|165931341|emb|CAP06913.1| integration host factor alpha-subunit [Chlamydia trachomatis
L2b/UCH-1/proctitis]
gi|231272912|emb|CAX09823.1| integration host factor alpha-subunit [Chlamydia trachomatis
B/TZ1A828/OT]
gi|231273924|emb|CAX10716.1| integration host factor alpha-subunit [Chlamydia trachomatis
B/Jali20/OT]
gi|289525306|emb|CBJ14782.1| integration host factor alpha-subunit [Chlamydia trachomatis
Sweden2]
gi|296434856|gb|ADH17034.1| integration host factor alpha-subunit [Chlamydia trachomatis
E/150]
gi|296435783|gb|ADH17957.1| integration host factor alpha-subunit [Chlamydia trachomatis
G/9768]
gi|296436708|gb|ADH18878.1| integration host factor alpha-subunit [Chlamydia trachomatis
G/11222]
gi|296437643|gb|ADH19804.1| integration host factor alpha-subunit [Chlamydia trachomatis
G/11074]
gi|296438576|gb|ADH20729.1| integration host factor alpha-subunit [Chlamydia trachomatis
E/11023]
gi|297140142|gb|ADH96900.1| integration host factor alpha-subunit [Chlamydia trachomatis
G/9301]
gi|297748397|gb|ADI50943.1| Integration host factor beta-subunit [Chlamydia trachomatis D-EC]
gi|297749277|gb|ADI51955.1| Integration host factor beta-subunit [Chlamydia trachomatis D-LC]
Length = 100
Score = 69.0 bits (168), Expect = 2e-10, Method: Composition-based stats.
Identities = 29/97 (29%), Positives = 48/97 (49%), Gaps = 2/97 (2%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K LI TI++ + K++ V ++ L++MT AL G R+E R FG V +R ++
Sbjct: 4 MTKKKLISTISQDH-KIHPNHVRTVIQNFLDKMTDALVQGDRLEFRDFGVLQVVERKPKV 62
Query: 61 ARAPLAQK-VISVEEKMVPFFRAGKNLKERLNSPDST 96
R P I + + F GK +K + +P +
Sbjct: 63 GRNPKNAAVPIHIPARRAVKFTPGKRMKRLIETPTKS 99
>gi|298384211|ref|ZP_06993771.1| DNA-binding protein HU [Bacteroides sp. 1_1_14]
gi|298482997|ref|ZP_07001178.1| DNA-binding protein HU [Bacteroides sp. D22]
gi|298262490|gb|EFI05354.1| DNA-binding protein HU [Bacteroides sp. 1_1_14]
gi|298270741|gb|EFI12321.1| DNA-binding protein HU [Bacteroides sp. D22]
gi|301165255|emb|CBW24826.1| Putative histone-like DNA-binding protein [Bacteroides fragilis
638R]
Length = 95
Score = 69.0 bits (168), Expect = 2e-10, Method: Composition-based stats.
Identities = 22/86 (25%), Positives = 47/86 (54%), Gaps = 1/86 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ +I ++++ ++ + V ++ ++ + AL V +RGFG+FS++KRAA+
Sbjct: 1 MTKADIINRVSEEL-GIDRRTVGLVIESFMKCVKDALGRERIVFLRGFGTFSLKKRAAKK 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNL 86
A+ I + + VP F+ ++
Sbjct: 60 AQNIQQHTTICIPARKVPHFKPSESF 85
>gi|294776170|ref|ZP_06741659.1| DNA-binding protein HU [Bacteroides vulgatus PC510]
gi|294449993|gb|EFG18504.1| DNA-binding protein HU [Bacteroides vulgatus PC510]
Length = 476
Score = 69.0 bits (168), Expect = 2e-10, Method: Composition-based stats.
Identities = 19/90 (21%), Positives = 43/90 (47%), Gaps = 1/90 (1%)
Query: 4 SSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLARA 63
+I +A+K+ + +D E V + E + +AL V+++G G+F + + +R +
Sbjct: 8 QDIIELLAEKHS-MTKKDAEIFVKGMFELIEEALVTEKYVKVKGLGTFKLTEVESRESVN 66
Query: 64 PLAQKVISVEEKMVPFFRAGKNLKERLNSP 93
+ I ++ F ++K+ +N P
Sbjct: 67 VNTGERIEIQGHTKISFTPDSSMKDLINKP 96
>gi|254882027|ref|ZP_05254737.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA]
gi|319640965|ref|ZP_07995673.1| integration host factor IHF alpha subunit [Bacteroides sp.
3_1_40A]
gi|254834820|gb|EET15129.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA]
gi|317387410|gb|EFV68281.1| integration host factor IHF alpha subunit [Bacteroides sp.
3_1_40A]
Length = 476
Score = 69.0 bits (168), Expect = 2e-10, Method: Composition-based stats.
Identities = 19/90 (21%), Positives = 43/90 (47%), Gaps = 1/90 (1%)
Query: 4 SSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLARA 63
+I +A+K+ + +D E V + E + +AL V+++G G+F + + +R +
Sbjct: 8 QDIIELLAEKHS-MTKKDAEIFVKGMFELIEEALVTEKYVKVKGLGTFKLTEVESRESVN 66
Query: 64 PLAQKVISVEEKMVPFFRAGKNLKERLNSP 93
+ I ++ F ++K+ +N P
Sbjct: 67 VNTGERIEIQGHTKISFTPDSSMKDLINKP 96
>gi|15618331|ref|NP_224616.1| integration host factor Alpha [Chlamydophila pneumoniae CWL029]
gi|15835949|ref|NP_300473.1| integration host factor alpha [Chlamydophila pneumoniae J138]
gi|16752623|ref|NP_444887.1| integration host factor beta-subunit, putative [Chlamydophila
pneumoniae AR39]
gi|33241765|ref|NP_876706.1| integration host factor beta chain [Chlamydophila pneumoniae
TW-183]
gi|9789718|sp|Q9Z8C7|DBH_CHLPN RecName: Full=Probable DNA-binding protein HU
gi|4376697|gb|AAD18560.1| Integration Host Factor Alpha [Chlamydophila pneumoniae CWL029]
gi|7189266|gb|AAF38192.1| integration host factor beta-subunit, putative [Chlamydophila
pneumoniae AR39]
gi|8978788|dbj|BAA98624.1| integration host factor alpha [Chlamydophila pneumoniae J138]
gi|33236274|gb|AAP98363.1| integration host factor beta chain [Chlamydophila pneumoniae
TW-183]
gi|269303292|gb|ACZ33392.1| DNA-binding protein HU [Chlamydophila pneumoniae LPCoLN]
Length = 100
Score = 69.0 bits (168), Expect = 2e-10, Method: Composition-based stats.
Identities = 29/96 (30%), Positives = 48/96 (50%), Gaps = 2/96 (2%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K LI TI++ + K++ V ++ L++MT AL G R+E R FG V +R ++
Sbjct: 4 MTKKKLISTISQDH-KIHPNHVRTVIQNFLDKMTDALVKGDRLEFRDFGVLQVVERKPKV 62
Query: 61 ARAPLAQK-VISVEEKMVPFFRAGKNLKERLNSPDS 95
R P I + + F GK +K + +P+
Sbjct: 63 GRNPKNAAVPIHIPARRAVKFTPGKRMKRLIETPNK 98
>gi|189912884|ref|YP_001964773.1| DNA-binding protein, IHF-related [Leptospira biflexa serovar
Patoc strain 'Patoc 1 (Ames)']
gi|189913209|ref|YP_001964438.1| Putative DNA-binding protein (HU-like protein) [Leptospira
biflexa serovar Patoc strain 'Patoc 1 (Paris)']
gi|167777560|gb|ABZ95860.1| DNA-binding protein, IHF-related [Leptospira biflexa serovar
Patoc strain 'Patoc 1 (Ames)']
gi|167781277|gb|ABZ99574.1| Putative DNA-binding protein (HU-like protein) [Leptospira
biflexa serovar Patoc strain 'Patoc 1 (Paris)']
Length = 101
Score = 69.0 bits (168), Expect = 2e-10, Method: Composition-based stats.
Identities = 21/90 (23%), Positives = 36/90 (40%), Gaps = 1/90 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS ++ +A+ + ++V ++ +E + G I G G R R R
Sbjct: 8 MKKSEMLSELAE-TTGMTKKNVAAFLDSFVELAYKETKKNGAFVIPGLGKLVKRNRPKRK 66
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P + I + K V F K K+ +
Sbjct: 67 GRNPATGEAIVIPAKTVVKFTLSKTCKDAV 96
>gi|1580711|dbj|BAA11644.1| HupB, beta-subunit of HU [Escherichia coli W3110]
Length = 54
Score = 69.0 bits (168), Expect = 2e-10, Method: Composition-based stats.
Identities = 25/54 (46%), Positives = 34/54 (62%)
Query: 38 ANGGRVEIRGFGSFSVRKRAARLARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
G V + GFG+F+V++RAAR R P K I++ VP FRAGK LK+ +N
Sbjct: 1 KEGDDVALVGFGTFAVKERAARTGRNPQTGKEITIAAAKVPSFRAGKALKDAVN 54
>gi|154492585|ref|ZP_02032211.1| hypothetical protein PARMER_02219 [Parabacteroides merdae ATCC
43184]
gi|154087810|gb|EDN86855.1| hypothetical protein PARMER_02219 [Parabacteroides merdae ATCC
43184]
Length = 94
Score = 69.0 bits (168), Expect = 2e-10, Method: Composition-based stats.
Identities = 21/90 (23%), Positives = 40/90 (44%), Gaps = 1/90 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K +LI +A++ + +K +N +E +T+ L+ G V I FG + R
Sbjct: 3 TKRALIKELAQRM-ECTDVAAKKFLNSYIELITEKLSEGEGVSIHYFGKLVPHYQTERPG 61
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R + + + F+A + L ++LN
Sbjct: 62 RNLRTGEECKIRARTSVKFKASEILIQKLN 91
>gi|254389768|ref|ZP_05004992.1| DNA-binding protein HU [Streptomyces clavuligerus ATCC 27064]
gi|294812896|ref|ZP_06771539.1| DNA-binding protein HU 1 [Streptomyces clavuligerus ATCC 27064]
gi|326441327|ref|ZP_08216061.1| DNA-binding protein HU 1 [Streptomyces clavuligerus ATCC 27064]
gi|197703479|gb|EDY49291.1| DNA-binding protein HU [Streptomyces clavuligerus ATCC 27064]
gi|294325495|gb|EFG07138.1| DNA-binding protein HU 1 [Streptomyces clavuligerus ATCC 27064]
Length = 93
Score = 69.0 bits (168), Expect = 2e-10, Method: Composition-based stats.
Identities = 27/94 (28%), Positives = 43/94 (45%), Gaps = 2/94 (2%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGG-RVEIRGFGSFSVRKRAAR 59
M +S L+ +A + ++ +D + ++ L E + + +A G +V I GF +F RAAR
Sbjct: 1 MNRSELVAALADR-AEVTRKDADAVLAALAETVGEIVAKGDEKVTIPGFLTFERTHRAAR 59
Query: 60 LARAPLAQKVISVEEKMVPFFRAGKNLKERLNSP 93
AR P I + AG LKE
Sbjct: 60 TARNPQTGDPIQIPAGYSVKVSAGSKLKEAAKGK 93
>gi|14194634|sp|Q9RZ89|DBH_DEIRA RecName: Full=DNA-binding protein HU
Length = 122
Score = 69.0 bits (168), Expect = 2e-10, Method: Composition-based stats.
Identities = 23/85 (27%), Positives = 41/85 (48%), Gaps = 1/85 (1%)
Query: 3 KSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLAR 62
K+ L+ +A + L + E+ ++ +LE + AL +G V + G G+ SV++ AAR
Sbjct: 36 KTQLVEMVADQT-GLTKKQSEEAISSMLECVVSALQSGKSVGLPGLGTLSVKETAARTGV 94
Query: 63 APLAQKVISVEEKMVPFFRAGKNLK 87
P + I + F+ LK
Sbjct: 95 RPGTSEKIQIPAGKKVAFKVASTLK 119
>gi|325860232|ref|ZP_08173357.1| DNA-binding protein HU-beta [Prevotella denticola CRIS 18C-A]
gi|325482319|gb|EGC85327.1| DNA-binding protein HU-beta [Prevotella denticola CRIS 18C-A]
Length = 91
Score = 69.0 bits (168), Expect = 2e-10, Method: Composition-based stats.
Identities = 30/92 (32%), Positives = 49/92 (53%), Gaps = 1/92 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI IA L+ D +K ++ E + AL G +V++ GFG+F+V +R A
Sbjct: 1 MNKTELIEKIAA-GAGLSKADAKKALDATTEAIKGALVVGDKVQLVGFGTFAVNERPAHE 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
P ++ I + K V F+AG L + +N+
Sbjct: 60 GINPATKQKIQIAAKKVAKFKAGAELADAVNA 91
>gi|220903465|ref|YP_002478777.1| histone family protein DNA-binding protein [Desulfovibrio
desulfuricans subsp. desulfuricans str. ATCC 27774]
gi|219867764|gb|ACL48099.1| histone family protein DNA-binding protein [Desulfovibrio
desulfuricans subsp. desulfuricans str. ATCC 27774]
Length = 95
Score = 69.0 bits (168), Expect = 2e-10, Method: Composition-based stats.
Identities = 27/90 (30%), Positives = 44/90 (48%), Gaps = 1/90 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ ++ I ++ K N DV+ +V LLE M A+ + I GFG F +A+R
Sbjct: 6 TKADIVEAIYEETDK-NRVDVKNVVEKLLEIMKTAIKKDRALLISGFGKFECYDKASRKG 64
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + I++ + V FR + + LN
Sbjct: 65 RNPKTDETITLPPRKVMVFRLSRKFRSELN 94
>gi|333030022|ref|ZP_08458083.1| histone family protein DNA-binding protein [Bacteroides coprosuis
DSM 18011]
gi|332740619|gb|EGJ71101.1| histone family protein DNA-binding protein [Bacteroides coprosuis
DSM 18011]
Length = 94
Score = 68.6 bits (167), Expect = 2e-10, Method: Composition-based stats.
Identities = 26/95 (27%), Positives = 44/95 (46%), Gaps = 1/95 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ ++ I KK ++ + ++ + +L N V +RGFGSF V+KRA +
Sbjct: 1 MTKADIVNEITKKT-GIDKVTALNTIEAFMDVVKDSLVNDENVYLRGFGSFIVKKRAQKT 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDS 95
AR I + E +P F+ K E + +
Sbjct: 60 ARNISKNTTIIIPEHNIPAFKPSKTFTEAVKKHNK 94
>gi|328882764|emb|CCA56003.1| Non-specific DNA-binding protein HBsu [Streptomyces venezuelae
ATCC 10712]
Length = 93
Score = 68.6 bits (167), Expect = 2e-10, Method: Composition-based stats.
Identities = 27/94 (28%), Positives = 43/94 (45%), Gaps = 2/94 (2%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGG-RVEIRGFGSFSVRKRAAR 59
M +S L+ +A + ++ +D + ++ L E + + +A G +V I GF +F RAAR
Sbjct: 1 MNRSELVAALADR-AEVTRKDADAVLAALAETVGEVVAKGDEKVTIPGFLTFERTHRAAR 59
Query: 60 LARAPLAQKVISVEEKMVPFFRAGKNLKERLNSP 93
AR P I + AG LKE
Sbjct: 60 TARNPQTGDPIDIPAGYSVKVSAGSKLKEAAKGK 93
>gi|288928985|ref|ZP_06422831.1| DNA-binding protein HU [Prevotella sp. oral taxon 317 str. F0108]
gi|288329969|gb|EFC68554.1| DNA-binding protein HU [Prevotella sp. oral taxon 317 str. F0108]
Length = 90
Score = 68.6 bits (167), Expect = 2e-10, Method: Composition-based stats.
Identities = 22/72 (30%), Positives = 39/72 (54%), Gaps = 1/72 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI IA L+ D +K ++ + + + L G +V++ GFG+FSV +R A
Sbjct: 1 MNKTDLIDKIAA-GSGLSKADSKKALDATVAAIKETLVKGDKVQLVGFGTFSVNERPAHG 59
Query: 61 ARAPLAQKVISV 72
P ++ I++
Sbjct: 60 GVNPATKEKITI 71
>gi|258648339|ref|ZP_05735808.1| putative integration host factor IHF alpha subunit [Prevotella
tannerae ATCC 51259]
gi|260851504|gb|EEX71373.1| putative integration host factor IHF alpha subunit [Prevotella
tannerae ATCC 51259]
Length = 423
Score = 68.6 bits (167), Expect = 2e-10, Method: Composition-based stats.
Identities = 19/96 (19%), Positives = 39/96 (40%), Gaps = 3/96 (3%)
Query: 1 MIKSSLIGTIAK---KNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRA 57
M + L+ +A + ++ + E + + + L + V+I+GFG+F V
Sbjct: 1 MNRKLLLQEVADAFAQRANISKKKAEAFCRAFFDLIEEELTHESFVKIKGFGTFKVITVN 60
Query: 58 ARLARAPLAQKVISVEEKMVPFFRAGKNLKERLNSP 93
R + + I ++ F LK+ +N P
Sbjct: 61 ERESININTGERIRIDSHAKLSFVPDSQLKDLINKP 96
>gi|323699317|ref|ZP_08111229.1| histone family protein DNA-binding protein [Desulfovibrio sp.
ND132]
gi|323459249|gb|EGB15114.1| histone family protein DNA-binding protein [Desulfovibrio
desulfuricans ND132]
Length = 94
Score = 68.6 bits (167), Expect = 2e-10, Method: Composition-based stats.
Identities = 23/90 (25%), Positives = 45/90 (50%), Gaps = 1/90 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ ++ I ++ K N +++ +V ++LE M +++ + I GFG F + AR
Sbjct: 5 TKAGIVDYIYERTDK-NRAEIKDLVEIILEIMKKSIKKDHALLISGFGKFEAYDKRARKG 63
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + I++ + V FR + + LN
Sbjct: 64 RNPQTTQTITLPPRKVVVFRLSRKFRAELN 93
>gi|134102579|ref|YP_001108240.1| histone-like DNA binding protein [Saccharopolyspora erythraea
NRRL 2338]
gi|291004735|ref|ZP_06562708.1| histone-like DNA binding protein [Saccharopolyspora erythraea
NRRL 2338]
gi|133915202|emb|CAM05315.1| histone-like DNA binding protein [Saccharopolyspora erythraea
NRRL 2338]
Length = 215
Score = 68.6 bits (167), Expect = 2e-10, Method: Composition-based stats.
Identities = 31/90 (34%), Positives = 48/90 (53%), Gaps = 2/90 (2%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI +A++ + K V +++ + + + G +V I GFG F R RAAR
Sbjct: 1 MNKAQLIEALAERLGD--KKTASKAVEDVVDIIVRQVNKGEKVNITGFGVFEKRARAART 58
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
AR P + + V++ VP FRAG KE +
Sbjct: 59 ARNPRTGEAVKVKKTNVPAFRAGTQFKEVI 88
>gi|116511709|ref|YP_808925.1| HU-like DNA-binding protein [Lactococcus lactis subsp. cremoris
SK11]
gi|116107363|gb|ABJ72503.1| nucleoid DNA-binding protein [Lactococcus lactis subsp. cremoris
SK11]
Length = 120
Score = 68.6 bits (167), Expect = 2e-10, Method: Composition-based stats.
Identities = 32/85 (37%), Positives = 50/85 (58%), Gaps = 1/85 (1%)
Query: 3 KSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLAR 62
K LI +A + +L+ + K +N +E +T ++ G V I FG+F VRK AAR++
Sbjct: 4 KQELIDYVADRT-ELSKVNAAKAINAFVEAITYYISEGATVHISNFGTFEVRKHAARISH 62
Query: 63 APLAQKVISVEEKMVPFFRAGKNLK 87
+++ I V E+ +P FRAGK LK
Sbjct: 63 DVHSREKILVGEQNIPVFRAGKALK 87
>gi|163782099|ref|ZP_02177098.1| DNA binding protein HU [Hydrogenivirga sp. 128-5-R1-1]
gi|159882631|gb|EDP76136.1| DNA binding protein HU [Hydrogenivirga sp. 128-5-R1-1]
Length = 100
Score = 68.6 bits (167), Expect = 2e-10, Method: Composition-based stats.
Identities = 22/86 (25%), Positives = 44/86 (51%), Gaps = 3/86 (3%)
Query: 1 MIKSSLIGTIAKK---NPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRA 57
M K + I + + +++ +IV+ + E + + L NG +V+I GFG+F V+ R
Sbjct: 1 MTKKDIASLIYGRCEEEFETTKKEIYQIVSEVFEIIEETLKNGEKVQISGFGTFLVKTRK 60
Query: 58 ARLARAPLAQKVISVEEKMVPFFRAG 83
++ R P + + V ++ V F+
Sbjct: 61 GKIGRNPRTGEEVPVPDRKVIVFKPS 86
>gi|262198187|ref|YP_003269396.1| histone family protein DNA-binding protein [Haliangium ochraceum
DSM 14365]
gi|262081534|gb|ACY17503.1| histone family protein DNA-binding protein [Haliangium ochraceum
DSM 14365]
Length = 105
Score = 68.6 bits (167), Expect = 2e-10, Method: Composition-based stats.
Identities = 27/105 (25%), Positives = 40/105 (38%), Gaps = 10/105 (9%)
Query: 1 MIKSSLIGTIAKKN---PKLNYQDVEKIVNMLLEEMTQALANGG-------RVEIRGFGS 50
M K LI + K L + V I+ + EE++ R GFG+
Sbjct: 1 MTKQELIDRVYAKYGKPANLTKKAVGDIIGGVFEELSDYFVKEKVTKKLTPRFTFPGFGT 60
Query: 51 FSVRKRAARLARAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDS 95
F+ + R AR R P I++ F G +LK +N S
Sbjct: 61 FTKKHREARKGRHPQTGAEITIGATDTLTFSIGSDLKATMNERSS 105
>gi|15672862|ref|NP_267036.1| HU-like DNA-binding protein [Lactococcus lactis subsp. lactis
Il1403]
gi|12723810|gb|AAK04978.1|AE006322_6 HU-like DNA-binding protein [Lactococcus lactis subsp. lactis
Il1403]
gi|12830842|gb|AAK08215.1|AF320914_2 HllB [Lactococcus lactis]
gi|326406426|gb|ADZ63497.1| DNA-binding protein HU-beta [Lactococcus lactis subsp. lactis
CV56]
Length = 115
Score = 68.6 bits (167), Expect = 2e-10, Method: Composition-based stats.
Identities = 33/85 (38%), Positives = 51/85 (60%), Gaps = 1/85 (1%)
Query: 3 KSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLAR 62
K LI +A + +L+ + K +N +E +T ++ G V I FG+F VRKRAAR++
Sbjct: 4 KQELIDYVADRT-ELSKVNAAKAINAFVEAITYYISEGTPVHISNFGTFEVRKRAARVSH 62
Query: 63 APLAQKVISVEEKMVPFFRAGKNLK 87
+++ I V E+ +P FRAGK LK
Sbjct: 63 DVHSREKILVGEQNIPVFRAGKALK 87
>gi|256419934|ref|YP_003120587.1| histone family protein DNA-binding protein [Chitinophaga pinensis
DSM 2588]
gi|256034842|gb|ACU58386.1| histone family protein DNA-binding protein [Chitinophaga pinensis
DSM 2588]
Length = 89
Score = 68.6 bits (167), Expect = 2e-10, Method: Composition-based stats.
Identities = 23/68 (33%), Positives = 36/68 (52%), Gaps = 1/68 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI +A K+ + + ++ + + L GG+V + GFG+FSV KRAAR
Sbjct: 1 MNKAELIDKLA-KDAGITKTQANEALDSFTKAVADTLKKGGKVTLVGFGTFSVSKRAARN 59
Query: 61 ARAPLAQK 68
R P +
Sbjct: 60 GRNPQTGQ 67
>gi|167854637|ref|ZP_02477417.1| integration host factor, alpha chain [Haemophilus parasuis 29755]
gi|219870912|ref|YP_002475287.1| integration host factor subunit alpha [Haemophilus parasuis
SH0165]
gi|254803517|sp|B8F4T7|IHFA_HAEPS RecName: Full=Integration host factor subunit alpha;
Short=IHF-alpha
gi|167854174|gb|EDS25408.1| integration host factor, alpha chain [Haemophilus parasuis 29755]
gi|219691116|gb|ACL32339.1| integration host factor, alpha chain/bacterial nucleoid
DNA-binding protein [Haemophilus parasuis SH0165]
Length = 98
Score = 68.6 bits (167), Expect = 3e-10, Method: Composition-based stats.
Identities = 26/95 (27%), Positives = 52/95 (54%), Gaps = 1/95 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K + + ++ L+ + ++ V EE+ ++L +G V++ GFG+F+VR + AR
Sbjct: 4 TKIEIAENLVER-CGLDKRIAKQFVEDFFEEIRRSLESGEEVKLSGFGNFTVRDKKARPG 62
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDST 96
R P + ++V + V F+AG+ L+ER+ +
Sbjct: 63 RNPKTGEDVAVSARRVVVFKAGQKLRERVENAKVK 97
>gi|295104398|emb|CBL01942.1| Bacterial nucleoid DNA-binding protein [Faecalibacterium
prausnitzii SL3/3]
Length = 100
Score = 68.6 bits (167), Expect = 3e-10, Method: Composition-based stats.
Identities = 24/100 (24%), Positives = 47/100 (47%), Gaps = 1/100 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M +S +I T+A+K VE ++ + +++ L +V I GFG F +R R +
Sbjct: 1 MTRSQMIETVARKT-GFTEAQVETTMDAMFDQIADCLRADEKVTIAGFGRFEMRPRKPKA 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDSTLSNS 100
P + +E +P F+A K++L + ++ +
Sbjct: 60 YTNPKTKVSSQLESTSIPGFKASGRFKQKLEAGKKSVEET 99
>gi|225012358|ref|ZP_03702794.1| histone family protein DNA-binding protein [Flavobacteria
bacterium MS024-2A]
gi|225003335|gb|EEG41309.1| histone family protein DNA-binding protein [Flavobacteria
bacterium MS024-2A]
Length = 97
Score = 68.6 bits (167), Expect = 3e-10, Method: Composition-based stats.
Identities = 23/93 (24%), Positives = 45/93 (48%), Gaps = 1/93 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ ++ I+ + ++ DV+ V ++E+ +L G V +RGFGSF ++ RA +
Sbjct: 1 MTKADIVSNISDQL-GIDRADVQATVEKFMKEVKGSLEKGENVYLRGFGSFIIKTRAEKT 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSP 93
R + + +P F+ K + + S
Sbjct: 60 GRNISKNIALKIPAHNIPSFKPAKIFVKGVKSK 92
>gi|330897792|gb|EGH29211.1| nucleoid protein HU beta subunit [Pseudomonas syringae pv.
japonica str. M301072PT]
Length = 63
Score = 68.6 bits (167), Expect = 3e-10, Method: Composition-based stats.
Identities = 24/64 (37%), Positives = 35/64 (54%), Gaps = 1/64 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI IA + + + ++ ++E +T AL G V + GFG+FSV R AR+
Sbjct: 1 MNKSELIDAIAA-SADIPKAAAGRALDAVIESVTGALKAGDSVVLVGFGTFSVTDRPARI 59
Query: 61 ARAP 64
R P
Sbjct: 60 GRNP 63
>gi|320321166|gb|EFW77307.1| single-stranded binding protein [Pseudomonas syringae pv.
glycinea str. B076]
Length = 104
Score = 68.6 bits (167), Expect = 3e-10, Method: Composition-based stats.
Identities = 25/95 (26%), Positives = 36/95 (37%), Gaps = 1/95 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K L IA+ K + L + + L NG + + G G V +R AR
Sbjct: 4 TKDQLAAGIAEAI-DAPNTTGRKALEQLGQIVADQLGNGAEITLPGIGKLKVAERPARTG 62
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDST 96
R P I + K V F K L + +N+ S
Sbjct: 63 RNPSTGAAIEIAAKKVVKFVPAKVLNDVINNGASQ 97
>gi|195952487|ref|YP_002120777.1| histone family protein DNA-binding protein [Hydrogenobaculum sp.
Y04AAS1]
gi|195932099|gb|ACG56799.1| histone family protein DNA-binding protein [Hydrogenobaculum sp.
Y04AAS1]
Length = 102
Score = 68.6 bits (167), Expect = 3e-10, Method: Composition-based stats.
Identities = 25/101 (24%), Positives = 49/101 (48%), Gaps = 6/101 (5%)
Query: 1 MIKSSLIG----TIAKKNPKLNYQDVEKIVNMLLEEMTQAL--ANGGRVEIRGFGSFSVR 54
M K L+ + K+N KL +DV +I+NM L + A+ ++++ GFG+F ++
Sbjct: 1 MRKKDLLDQVMIKLQKQNTKLKKRDVSRIINMFLNALEDAIISKKENKIQLSGFGTFYIK 60
Query: 55 KRAARLARAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDS 95
+R R+ R P + + + F+ +N ++N
Sbjct: 61 ERKPRIGRNPKTGDLYKIPPRYNLTFKPSQNFVLQVNHKKK 101
>gi|150005791|ref|YP_001300535.1| putative integration host factor IHF alpha subunit [Bacteroides
vulgatus ATCC 8482]
gi|149934215|gb|ABR40913.1| putative integration host factor IHF alpha subunit [Bacteroides
vulgatus ATCC 8482]
Length = 476
Score = 68.6 bits (167), Expect = 3e-10, Method: Composition-based stats.
Identities = 19/90 (21%), Positives = 43/90 (47%), Gaps = 1/90 (1%)
Query: 4 SSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLARA 63
+I +A+K+ + +D E V + E + +AL V+++G G+F + + +R +
Sbjct: 8 QDIIELLAEKHS-MTKKDAEIFVKGMFELIEEALVTEKYVKVKGLGTFKLTEVESRESVN 66
Query: 64 PLAQKVISVEEKMVPFFRAGKNLKERLNSP 93
+ I ++ F ++K+ +N P
Sbjct: 67 VNTGERIEIQGHTKISFTPDSSMKDLINKP 96
>gi|154250962|ref|YP_001411786.1| histone family DNA-binding protein [Parvibaculum lavamentivorans
DS-1]
gi|154154912|gb|ABS62129.1| histone family protein DNA-binding protein [Parvibaculum
lavamentivorans DS-1]
Length = 113
Score = 68.6 bits (167), Expect = 3e-10, Method: Composition-based stats.
Identities = 29/87 (33%), Positives = 46/87 (52%), Gaps = 1/87 (1%)
Query: 4 SSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLARA 63
S LI IA+K+ L+ + ++ + +E + L G +V + G G VRKRAAR+ R
Sbjct: 28 SKLIAEIAEKH-DLSKKAATELFSDFVELTVKNLKKGNKVRLTGLGILQVRKRAARMGRN 86
Query: 64 PLAQKVISVEEKMVPFFRAGKNLKERL 90
P + I ++ FR K+LKE +
Sbjct: 87 PATGEAIKIKASKKVAFRVAKDLKEAI 113
>gi|325278965|ref|YP_004251507.1| histone family protein DNA-binding protein [Odoribacter
splanchnicus DSM 20712]
gi|324310774|gb|ADY31327.1| histone family protein DNA-binding protein [Odoribacter
splanchnicus DSM 20712]
Length = 95
Score = 68.6 bits (167), Expect = 3e-10, Method: Composition-based stats.
Identities = 25/96 (26%), Positives = 44/96 (45%), Gaps = 1/96 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ ++ I+ + + V+ V +E + ++ G V +RGFGSF V+KRA +
Sbjct: 1 MTKADIVNEIS-RTTGIEKVAVQATVEAFMESIKNSVVEGKNVYLRGFGSFVVKKRAEKT 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDST 96
AR I + E +P F+ K+ +
Sbjct: 60 ARNISKNVTIKIPEHFIPSFKPSKSFVNDVKGNVKK 95
>gi|190014828|ref|YP_001967592.1| orf_Bo196 [Agrobacterium tumefaciens]
gi|71849631|gb|AAZ50579.1| orf_Bo196 [Agrobacterium tumefaciens]
Length = 92
Score = 68.6 bits (167), Expect = 3e-10, Method: Composition-based stats.
Identities = 25/88 (28%), Positives = 35/88 (39%), Gaps = 1/88 (1%)
Query: 5 SLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLARAP 64
+ IA + L + IV + +T A +G I GFG F ++ R AR P
Sbjct: 6 EIAEKIASEQ-NLTKAQAKSIVETVFASITTAATSGAETSIPGFGKFKIKDTPEREARNP 64
Query: 65 LAQKVISVEEKMVPFFRAGKNLKERLNS 92
I V F+ K LK+ LN
Sbjct: 65 ATGATIKVAAAKKLTFQPAKALKDVLNK 92
>gi|254386635|ref|ZP_05001932.1| histone-like DNA-binding protein [Streptomyces sp. Mg1]
gi|194345477|gb|EDX26443.1| histone-like DNA-binding protein [Streptomyces sp. Mg1]
Length = 93
Score = 68.6 bits (167), Expect = 3e-10, Method: Composition-based stats.
Identities = 26/94 (27%), Positives = 44/94 (46%), Gaps = 2/94 (2%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGG-RVEIRGFGSFSVRKRAAR 59
M +S L+ ++++ ++ +D + ++ L E + + +A G +V I GF +F RAAR
Sbjct: 1 MNRSELVAALSER-AEVTRKDADAVLAALAETIGEVVAKGDEKVTIPGFLTFERTHRAAR 59
Query: 60 LARAPLAQKVISVEEKMVPFFRAGKNLKERLNSP 93
AR P I + AG LKE
Sbjct: 60 TARNPQTGDPIQIPAGFSVKVSAGSKLKEAAKGK 93
>gi|29840141|ref|NP_829247.1| integration host factor beta-subunit, putative [Chlamydophila
caviae GPIC]
gi|62184997|ref|YP_219782.1| integration host factor alpha-subunit [Chlamydophila abortus
S26/3]
gi|89898437|ref|YP_515547.1| DNA-binding protein HU [Chlamydophila felis Fe/C-56]
gi|332287322|ref|YP_004422223.1| integration host factor alpha-subunit [Chlamydophila psittaci
6BC]
gi|29834489|gb|AAP05125.1| integration host factor beta-subunit, putative [Chlamydophila
caviae GPIC]
gi|62148064|emb|CAH63818.1| integration host factor alpha-subunit [Chlamydophila abortus
S26/3]
gi|89331809|dbj|BAE81402.1| DNA-binding protein HU [Chlamydophila felis Fe/C-56]
gi|313847906|emb|CBY16901.1| integration host factor alpha-subunit [Chlamydophila psittaci
RD1]
gi|325507160|gb|ADZ18798.1| integration host factor alpha-subunit [Chlamydophila psittaci
6BC]
gi|328914565|gb|AEB55398.1| integration host factor, beta subunit, putative [Chlamydophila
psittaci 6BC]
Length = 100
Score = 68.6 bits (167), Expect = 3e-10, Method: Composition-based stats.
Identities = 29/96 (30%), Positives = 47/96 (48%), Gaps = 2/96 (2%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K LI TI++ + K++ V ++ L++MT AL G R+E R FG V +R ++
Sbjct: 4 MTKKKLISTISQDH-KIHPNHVRTVIQNFLDKMTDALVKGDRLEFRDFGVLQVVERKPKV 62
Query: 61 ARAPLAQK-VISVEEKMVPFFRAGKNLKERLNSPDS 95
R P I + + F GK +K + +P
Sbjct: 63 GRNPKNATVPIHIPARRAVKFTPGKRMKRLIETPSK 98
>gi|160944593|ref|ZP_02091820.1| hypothetical protein FAEPRAM212_02106 [Faecalibacterium prausnitzii
M21/2]
gi|158443777|gb|EDP20781.1| hypothetical protein FAEPRAM212_02106 [Faecalibacterium prausnitzii
M21/2]
Length = 100
Score = 68.6 bits (167), Expect = 3e-10, Method: Composition-based stats.
Identities = 24/100 (24%), Positives = 47/100 (47%), Gaps = 1/100 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M +S +I T+A+K VE ++ + +++ L +V I GFG F +R R +
Sbjct: 1 MTRSQMIETVARKT-GFTEAQVETTMDAMFDQIADCLRADEKVTIAGFGRFEMRPRKPKA 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDSTLSNS 100
P + +E +P F+A K++L + ++ +
Sbjct: 60 YTNPKTKVSSQLESTSIPGFKASGRFKQKLEAGKKSVEET 99
>gi|212693202|ref|ZP_03301330.1| hypothetical protein BACDOR_02712 [Bacteroides dorei DSM 17855]
gi|212664307|gb|EEB24879.1| hypothetical protein BACDOR_02712 [Bacteroides dorei DSM 17855]
Length = 439
Score = 68.6 bits (167), Expect = 3e-10, Method: Composition-based stats.
Identities = 20/90 (22%), Positives = 44/90 (48%), Gaps = 1/90 (1%)
Query: 4 SSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLARA 63
+I +A+K+ + +D E V + E + +ALA V+++G G+F + + +R +
Sbjct: 8 QDIIELLAEKHS-MTKKDAEIFVKGMFELIEEALATEKYVKVKGLGTFKLTEVESRESVN 66
Query: 64 PLAQKVISVEEKMVPFFRAGKNLKERLNSP 93
+ I ++ F ++K+ +N P
Sbjct: 67 VNTGERIEIQGHTKISFTPDSSMKDLINKP 96
>gi|330444386|ref|YP_004377372.1| histone-like DNA-binding protein [Chlamydophila pecorum E58]
gi|328807496|gb|AEB41669.1| Bacterial histone-like DNA-binding protein [Chlamydophila pecorum
E58]
Length = 100
Score = 68.6 bits (167), Expect = 3e-10, Method: Composition-based stats.
Identities = 29/97 (29%), Positives = 48/97 (49%), Gaps = 2/97 (2%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K LI TI++ + K++ V ++ L++MT AL G R+E R FG V +R ++
Sbjct: 4 MTKKKLISTISQDH-KIHPNHVRTVIQNFLDKMTDALVKGDRLEFRDFGVLQVVERKPKV 62
Query: 61 ARAPLAQK-VISVEEKMVPFFRAGKNLKERLNSPDST 96
R P I + + F GK +K + +P+
Sbjct: 63 GRNPKNAAVPIHIPARKAVKFTPGKRMKRLIETPNKQ 99
>gi|160882774|ref|ZP_02063777.1| hypothetical protein BACOVA_00735 [Bacteroides ovatus ATCC 8483]
gi|156111798|gb|EDO13543.1| hypothetical protein BACOVA_00735 [Bacteroides ovatus ATCC 8483]
Length = 471
Score = 68.6 bits (167), Expect = 3e-10, Method: Composition-based stats.
Identities = 21/90 (23%), Positives = 38/90 (42%), Gaps = 1/90 (1%)
Query: 4 SSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLARA 63
L +A K+ + +D E V + QAL N V+I+G G+F + +R +
Sbjct: 8 QDLTDLLAAKHS-MTKKDAEAFVKEFFLLIEQALENEKTVKIKGLGTFKLIDVDSRESVN 66
Query: 64 PLAQKVISVEEKMVPFFRAGKNLKERLNSP 93
+ ++ F NL++ +N P
Sbjct: 67 VNTGERFQIKGHTKVSFSPDANLRDTINKP 96
>gi|260910484|ref|ZP_05917153.1| DNA-binding protein HU [Prevotella sp. oral taxon 472 str. F0295]
gi|260635430|gb|EEX53451.1| DNA-binding protein HU [Prevotella sp. oral taxon 472 str. F0295]
Length = 90
Score = 68.3 bits (166), Expect = 3e-10, Method: Composition-based stats.
Identities = 23/72 (31%), Positives = 40/72 (55%), Gaps = 1/72 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI IA L+ D +K ++ + + AL G +V++ GFG+FSV +R A +
Sbjct: 1 MNKTDLIDKIAA-GSGLSKADSKKALDATVAAIKGALVKGDKVQLVGFGTFSVNERPAHV 59
Query: 61 ARAPLAQKVISV 72
P ++ I++
Sbjct: 60 GVNPATKQKITI 71
>gi|312601041|gb|ADQ90296.1| Bacterial nucleoid DNA-binding protein [Mycoplasma hyopneumoniae
168]
Length = 90
Score = 68.3 bits (166), Expect = 3e-10, Method: Composition-based stats.
Identities = 25/90 (27%), Positives = 41/90 (45%), Gaps = 1/90 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K LI IA K L +++E ++N + G++ I FG+F + A
Sbjct: 1 MNKKELIEQIATKT-NLPIKNIELVLNEFFGITADVVKKQGKLVINSFGTFQGVFKPASS 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
+ PL + I+V K F+ K LK+ +
Sbjct: 60 SFNPLTKTQITVNAKTTVRFKPSKVLKDFI 89
>gi|284032739|ref|YP_003382670.1| histone family protein DNA-binding protein [Kribbella flavida DSM
17836]
gi|283812032|gb|ADB33871.1| histone family protein DNA-binding protein [Kribbella flavida DSM
17836]
Length = 197
Score = 68.3 bits (166), Expect = 3e-10, Method: Composition-based stats.
Identities = 28/91 (30%), Positives = 47/91 (51%), Gaps = 2/91 (2%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQAL-ANGGRVEIRGFGSFSVRKRAAR 59
M KS L+ +A N + + + +++ + + L GG+V I GFG+F +R AR
Sbjct: 1 MNKSQLVEALAVHFDG-NRRSAQHALESVIDTVQRELTKKGGKVAITGFGAFEAIERGAR 59
Query: 60 LARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
+ R P + ++ +VP FRAG LK +
Sbjct: 60 MVRNPRTGETKRAKKTVVPKFRAGAELKAVV 90
>gi|150009221|ref|YP_001303964.1| putative histone-like protein [Parabacteroides distasonis ATCC
8503]
gi|149937645|gb|ABR44342.1| putative histone-like protein [Parabacteroides distasonis ATCC
8503]
Length = 91
Score = 68.3 bits (166), Expect = 3e-10, Method: Composition-based stats.
Identities = 24/92 (26%), Positives = 48/92 (52%), Gaps = 1/92 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI ++K+ + ++ I+ L + + G +V I+GFG ++ R + +RL
Sbjct: 1 MNKSQLIEELSKRVGN-DKAEIRYILEELNNIILEKTRAGEKVCIQGFGVYTPRLQTSRL 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
AR P + + + + + + F+ NL + +N
Sbjct: 60 ARNPKSGETLMLIPRTIVHFKCAPNLLKEINK 91
>gi|150008609|ref|YP_001303352.1| DNA-binding protein HU [Parabacteroides distasonis ATCC 8503]
gi|255014407|ref|ZP_05286533.1| DNA-binding protein HU [Bacteroides sp. 2_1_7]
gi|256841374|ref|ZP_05546881.1| integration host factor, beta subunit [Parabacteroides sp. D13]
gi|262383459|ref|ZP_06076595.1| DNA-binding protein HU [Bacteroides sp. 2_1_33B]
gi|298376095|ref|ZP_06986051.1| DNA-binding protein HU [Bacteroides sp. 3_1_19]
gi|301309507|ref|ZP_07215449.1| DNA-binding protein HU [Bacteroides sp. 20_3]
gi|149937033|gb|ABR43730.1| DNA-binding protein HU [Parabacteroides distasonis ATCC 8503]
gi|256737217|gb|EEU50544.1| integration host factor, beta subunit [Parabacteroides sp. D13]
gi|262294357|gb|EEY82289.1| DNA-binding protein HU [Bacteroides sp. 2_1_33B]
gi|298267132|gb|EFI08789.1| DNA-binding protein HU [Bacteroides sp. 3_1_19]
gi|300832596|gb|EFK63224.1| DNA-binding protein HU [Bacteroides sp. 20_3]
Length = 90
Score = 68.3 bits (166), Expect = 3e-10, Method: Composition-based stats.
Identities = 27/91 (29%), Positives = 46/91 (50%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ ++ I+ K+ ++ Q V V ++ + +LA G V +RGFGSF ++KRA +
Sbjct: 1 MTKADIVSEIS-KSTGIDKQTVLASVESFMDIVKSSLAQGENVYLRGFGSFVIKKRAQKT 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
AR I + E +P F+ K +
Sbjct: 60 ARNISKNTTIIIPEHNIPSFKPAKTFIGEVK 90
>gi|42527215|ref|NP_972313.1| HU family DNA-binding protein [Treponema denticola ATCC 35405]
gi|41817639|gb|AAS12224.1| DNA-binding protein, HU family [Treponema denticola ATCC 35405]
gi|325474261|gb|EGC77449.1| HU family DNA-binding protein [Treponema denticola F0402]
Length = 106
Score = 68.3 bits (166), Expect = 3e-10, Method: Composition-based stats.
Identities = 30/95 (31%), Positives = 48/95 (50%), Gaps = 1/95 (1%)
Query: 3 KSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL-A 61
K +I ++ + NP+ + + I N+ L+E++ L G VEIRG GSF R A
Sbjct: 7 KIDIIDSVYRNNPQYQLKQINAIANLFLDELSVLLQQGIPVEIRGLGSFDFAVLHGRKNA 66
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDST 96
R P + + ++ F+ GK LKE L+ D+
Sbjct: 67 RNPKTGEAVLTADRCKVRFKPGKELKEALHKIDTQ 101
>gi|255603677|ref|XP_002538095.1| DNA-binding protein HU, putative [Ricinus communis]
gi|223513840|gb|EEF24287.1| DNA-binding protein HU, putative [Ricinus communis]
Length = 101
Score = 68.3 bits (166), Expect = 3e-10, Method: Composition-based stats.
Identities = 26/96 (27%), Positives = 44/96 (45%), Gaps = 1/96 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M + L+ IA K+ L +I++ + + +T + G V+I GFG+F + R AR
Sbjct: 1 MNRVQLVEIIADKH-GLTKVVAAEILDTITQTITTTVKKNGVVQILGFGTFKQQVRVART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDST 96
P+ K I + VP F G K ++ +
Sbjct: 60 GYNPVEGKKIKLPATKVPKFVPGTKFKAAVDPKAAK 95
>gi|254362042|ref|ZP_04978168.1| integration host factor alpha subunit [Mannheimia haemolytica
PHL213]
gi|261495203|ref|ZP_05991665.1| integration host factor alpha subunit [Mannheimia haemolytica
serotype A2 str. OVINE]
gi|153093596|gb|EDN74564.1| integration host factor alpha subunit [Mannheimia haemolytica
PHL213]
gi|261309128|gb|EEY10369.1| integration host factor alpha subunit [Mannheimia haemolytica
serotype A2 str. OVINE]
Length = 98
Score = 68.3 bits (166), Expect = 3e-10, Method: Composition-based stats.
Identities = 28/89 (31%), Positives = 51/89 (57%), Gaps = 1/89 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K + + +K L + ++ V + EE+ +L NG V++ GFG+FS+R++ AR
Sbjct: 4 TKIEIAENLIEKF-GLEKRVAKQFVELFFEEIRSSLENGEEVKLSGFGNFSLREKKARPG 62
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P + ++V + V F+AG+ L+ER+
Sbjct: 63 RNPKTGENVAVSARRVVVFKAGQKLRERV 91
>gi|237709944|ref|ZP_04540425.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA]
gi|237725390|ref|ZP_04555871.1| conserved hypothetical protein [Bacteroides sp. D4]
gi|229436077|gb|EEO46154.1| conserved hypothetical protein [Bacteroides dorei 5_1_36/D4]
gi|229456037|gb|EEO61758.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA]
Length = 474
Score = 68.3 bits (166), Expect = 3e-10, Method: Composition-based stats.
Identities = 20/90 (22%), Positives = 44/90 (48%), Gaps = 1/90 (1%)
Query: 4 SSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLARA 63
+I +A+K+ + +D E V + E + +ALA V+++G G+F + + +R +
Sbjct: 8 QDIIELLAEKHS-MTKKDAEIFVKGMFELIEEALATEKYVKVKGLGTFKLTEVESRESVN 66
Query: 64 PLAQKVISVEEKMVPFFRAGKNLKERLNSP 93
+ I ++ F ++K+ +N P
Sbjct: 67 VNTGERIEIQGHTKISFTPDSSMKDLINKP 96
>gi|312131596|ref|YP_003998936.1| histone family protein DNA-binding protein [Leadbetterella
byssophila DSM 17132]
gi|311908142|gb|ADQ18583.1| histone family protein DNA-binding protein [Leadbetterella
byssophila DSM 17132]
Length = 96
Score = 68.3 bits (166), Expect = 3e-10, Method: Composition-based stats.
Identities = 24/93 (25%), Positives = 44/93 (47%), Gaps = 1/93 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ +I I++K ++ + E + + L+ G + +RGFGSF +KRA +
Sbjct: 1 MTKAEVISIISEKT-GVDKAATSATIEAFFETVKEQLSGGEAIYVRGFGSFVNKKRAEKK 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSP 93
AR + ++V +P F+ K E +
Sbjct: 60 ARNISKKTTVTVPAHYIPSFKPSKEFVEEVKKN 92
>gi|261492544|ref|ZP_05989097.1| integration host factor alpha subunit [Mannheimia haemolytica
serotype A2 str. BOVINE]
gi|261311703|gb|EEY12853.1| integration host factor alpha subunit [Mannheimia haemolytica
serotype A2 str. BOVINE]
Length = 99
Score = 68.3 bits (166), Expect = 3e-10, Method: Composition-based stats.
Identities = 28/89 (31%), Positives = 51/89 (57%), Gaps = 1/89 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K + + +K L + ++ V + EE+ +L NG V++ GFG+FS+R++ AR
Sbjct: 5 TKIEIAENLIEKF-GLEKRVAKQFVELFFEEIRSSLENGEEVKLSGFGNFSLREKKARPG 63
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P + ++V + V F+AG+ L+ER+
Sbjct: 64 RNPKTGENVAVSARRVVVFKAGQKLRERV 92
>gi|253570783|ref|ZP_04848191.1| DNA-binding protein HU [Bacteroides sp. 1_1_6]
gi|251839732|gb|EES67815.1| DNA-binding protein HU [Bacteroides sp. 1_1_6]
Length = 95
Score = 68.3 bits (166), Expect = 3e-10, Method: Composition-based stats.
Identities = 21/86 (24%), Positives = 47/86 (54%), Gaps = 1/86 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ +I ++++ ++ + V ++ ++ + AL V +RGFG+FS++KRAA+
Sbjct: 1 MTKADIINRVSEEL-GIDRRTVGLVIESFMKCVKDALGRERSVFLRGFGTFSLKKRAAKK 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNL 86
A+ I + + +P F+ ++
Sbjct: 60 AQNIQQHTTICIPARKIPHFKPSESF 85
>gi|237716501|ref|ZP_04546982.1| conserved hypothetical protein [Bacteroides sp. D1]
gi|262408099|ref|ZP_06084647.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
gi|294645093|ref|ZP_06722819.1| DNA-binding protein HU [Bacteroides ovatus SD CC 2a]
gi|229444148|gb|EEO49939.1| conserved hypothetical protein [Bacteroides sp. D1]
gi|262354907|gb|EEZ03999.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
gi|292639599|gb|EFF57891.1| DNA-binding protein HU [Bacteroides ovatus SD CC 2a]
Length = 472
Score = 68.3 bits (166), Expect = 3e-10, Method: Composition-based stats.
Identities = 21/90 (23%), Positives = 38/90 (42%), Gaps = 1/90 (1%)
Query: 4 SSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLARA 63
L +A K+ + +D E V + QAL N V+I+G G+F + +R +
Sbjct: 8 QDLTDLLAAKHS-MTKKDAEAFVKEFFLLIEQALENEKTVKIKGLGTFKLIDVDSRESVN 66
Query: 64 PLAQKVISVEEKMVPFFRAGKNLKERLNSP 93
+ ++ F NL++ +N P
Sbjct: 67 VNTGERFQIKGHTKVSFSPDANLRDTINKP 96
>gi|302534743|ref|ZP_07287085.1| integration host factor, beta subunit [Streptomyces sp. C]
gi|302443638|gb|EFL15454.1| integration host factor, beta subunit [Streptomyces sp. C]
Length = 93
Score = 68.3 bits (166), Expect = 3e-10, Method: Composition-based stats.
Identities = 26/94 (27%), Positives = 44/94 (46%), Gaps = 2/94 (2%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGG-RVEIRGFGSFSVRKRAAR 59
M +S L+ ++++ ++ +D + ++ L E + + +A G +V I GF +F RAAR
Sbjct: 1 MNRSELVAALSER-AEVTRKDADAVLAALAETVGEIVAKGDEKVTIPGFLTFERTHRAAR 59
Query: 60 LARAPLAQKVISVEEKMVPFFRAGKNLKERLNSP 93
AR P I + AG LKE
Sbjct: 60 TARNPQTGDPIQIPAGYSVKVSAGSKLKEAAKGK 93
>gi|269958260|ref|YP_003328047.1| integration host factor, alpha subunit [Anaplasma centrale str.
Israel]
gi|269848089|gb|ACZ48733.1| integration host factor, alpha subunit [Anaplasma centrale str.
Israel]
Length = 98
Score = 68.3 bits (166), Expect = 4e-10, Method: Composition-based stats.
Identities = 24/94 (25%), Positives = 45/94 (47%), Gaps = 1/94 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
++ L TI + ++ +D +V +L+EM +L G ++I FG+F V ++ R+
Sbjct: 6 TRAQLADTI-NREIGISREDALVLVGEMLDEMVSSLVRDGLLKISSFGTFKVIRKKERVC 64
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDS 95
R P + V+E F +K +N +S
Sbjct: 65 RNPKTLEQFIVKEHNTVTFCPSVTMKRLINGEES 98
>gi|3334235|sp|P95516|IHFA_PASHA RecName: Full=Integration host factor subunit alpha;
Short=IHF-alpha
gi|1842235|gb|AAC44843.1| integration host factor Alpha subunit [Mannheimia haemolytica]
Length = 99
Score = 68.3 bits (166), Expect = 4e-10, Method: Composition-based stats.
Identities = 28/89 (31%), Positives = 50/89 (56%), Gaps = 1/89 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K + + +K L + + V + EE+ +L NG V++ GFG+FS+R++ AR
Sbjct: 5 TKIEIAENLIEKF-GLEKRVANEFVELFFEEIRSSLENGEEVKLSGFGNFSLREKKARPG 63
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P + ++V + V F+AG+ L+ER+
Sbjct: 64 RNPKTGENVAVSARRVVVFKAGQKLRERV 92
>gi|320333649|ref|YP_004170360.1| histone family protein DNA-binding protein [Deinococcus
maricopensis DSM 21211]
gi|319754938|gb|ADV66695.1| histone family protein DNA-binding protein [Deinococcus
maricopensis DSM 21211]
Length = 122
Score = 68.3 bits (166), Expect = 4e-10, Method: Composition-based stats.
Identities = 25/85 (29%), Positives = 42/85 (49%), Gaps = 1/85 (1%)
Query: 3 KSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLAR 62
K+ +I +A + LN + + V +L+ + +AL +G V + G G+FSV K AAR
Sbjct: 36 KTQIIDLVADQTS-LNKKQAAEAVATMLDVVVEALRDGKSVGLPGLGTFSVAKTAARTGV 94
Query: 63 APLAQKVISVEEKMVPFFRAGKNLK 87
P + I++ F+ LK
Sbjct: 95 KPGTSERITIPAGKKVRFKVASTLK 119
>gi|255080644|ref|XP_002503895.1| predicted protein [Micromonas sp. RCC299]
gi|226519162|gb|ACO65153.1| predicted protein [Micromonas sp. RCC299]
Length = 118
Score = 68.3 bits (166), Expect = 4e-10, Method: Composition-based stats.
Identities = 26/87 (29%), Positives = 40/87 (45%), Gaps = 2/87 (2%)
Query: 7 IGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLARAPLA 66
+ +A + ++ + E + LL + A+ G RV +GFGSF RAAR P
Sbjct: 33 VDLMASE-AGISKKQAEIALKSLLAGIEGAVVAGERVTFQGFGSFESVARAARTGVNPQN 91
Query: 67 Q-KVISVEEKMVPFFRAGKNLKERLNS 92
+ I + M P F+AG K +N
Sbjct: 92 PTQKIKIPASMAPKFKAGSAFKSAVNK 118
>gi|110640053|ref|YP_680263.1| DNA-binding protein HU [Cytophaga hutchinsonii ATCC 33406]
gi|110282734|gb|ABG60920.1| DNA-binding protein HU [Cytophaga hutchinsonii ATCC 33406]
Length = 110
Score = 68.3 bits (166), Expect = 4e-10, Method: Composition-based stats.
Identities = 27/88 (30%), Positives = 46/88 (52%), Gaps = 1/88 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ +I IA+K ++ DV V + + +++ G + +RGFGSF +KRA ++
Sbjct: 1 MTKADVINEIAEKT-GIDKADVTTTVEAFFKVVKDSMSEGHNIYVRGFGSFINKKRARKV 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKE 88
AR I ++E +P F+ K E
Sbjct: 60 ARNISKNTAIIIDEHYIPSFKPAKVFVE 87
>gi|330813566|ref|YP_004357805.1| integration host factor beta subunit [Candidatus Pelagibacter sp.
IMCC9063]
gi|327486661|gb|AEA81066.1| integration host factor beta subunit [Candidatus Pelagibacter sp.
IMCC9063]
Length = 101
Score = 68.3 bits (166), Expect = 4e-10, Method: Composition-based stats.
Identities = 28/85 (32%), Positives = 44/85 (51%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
+K LI + K PK+ D+EK V + + ++ LA+G VEIRGFG + R A
Sbjct: 7 VKKELIQELQSKYPKILNADIEKTVEGIFKYLSNQLASGHNVEIRGFGMLKTKATKPRTA 66
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNL 86
R P + + + V K +++ K L
Sbjct: 67 RNPKSGESVEVPAKRKISWKSSKLL 91
>gi|229182102|ref|ZP_04309394.1| DNA-binding protein HU 1 [Bacillus cereus 172560W]
gi|228601353|gb|EEK58882.1| DNA-binding protein HU 1 [Bacillus cereus 172560W]
Length = 93
Score = 68.3 bits (166), Expect = 4e-10, Method: Composition-based stats.
Identities = 33/91 (36%), Positives = 52/91 (57%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
+ K+ L +A+K +L +D +L+ +T ALANG +V+I GFG+F VR+R+AR
Sbjct: 4 INKTELTKVVAEKT-ELIQKDPVAATQTVLDTITSALANGEKVQILGFGTFEVRERSART 62
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + + + F+AGK LKE +
Sbjct: 63 GRNPQTGEEMQIAASKASAFKAGKELKEAVK 93
>gi|282860074|ref|ZP_06269155.1| DNA-binding protein HU [Prevotella bivia JCVIHMP010]
gi|282587162|gb|EFB92386.1| DNA-binding protein HU [Prevotella bivia JCVIHMP010]
Length = 92
Score = 68.3 bits (166), Expect = 4e-10, Method: Composition-based stats.
Identities = 26/93 (27%), Positives = 44/93 (47%), Gaps = 2/93 (2%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQAL-ANGGRVEIRGFGSFSVRKRAAR 59
M K+ +I IA + ++ +DV +V ++ + +L V +RGFGSF V+ RA +
Sbjct: 1 MTKADIINEIATET-GISKKDVSAVVESFMDAIKDSLLDKKENVYLRGFGSFIVKHRAEK 59
Query: 60 LARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
AR I++ P F+ K E +
Sbjct: 60 TARNISKNTTITIPAHDFPSFKPAKTFIEDMKK 92
>gi|265753596|ref|ZP_06088951.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
gi|263235310|gb|EEZ20834.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
Length = 474
Score = 68.3 bits (166), Expect = 4e-10, Method: Composition-based stats.
Identities = 20/90 (22%), Positives = 44/90 (48%), Gaps = 1/90 (1%)
Query: 4 SSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLARA 63
+I +A+K+ + +D E V + E + +ALA V+++G G+F + + +R +
Sbjct: 8 QDIIELLAEKHS-MTKKDAEIFVKGMFELIEEALATEKYVKVKGLGTFKLTEVESRESVN 66
Query: 64 PLAQKVISVEEKMVPFFRAGKNLKERLNSP 93
+ I ++ F ++K+ +N P
Sbjct: 67 VNTGERIEIQGHTKISFTPDSSMKDLINKP 96
>gi|182414469|ref|YP_001819535.1| histone family protein DNA-binding protein [Opitutus terrae
PB90-1]
gi|177841683|gb|ACB75935.1| histone family protein DNA-binding protein [Opitutus terrae
PB90-1]
Length = 102
Score = 68.3 bits (166), Expect = 4e-10, Method: Composition-based stats.
Identities = 30/94 (31%), Positives = 50/94 (53%), Gaps = 2/94 (2%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K ++ I KK + V + V + L+ + +ALA G VE+R FG V+ R AR+
Sbjct: 6 TKREIVLEIYKKT-GFPQKQVVESVQLTLDIIQKALAEGRNVELRNFGVLEVQVRKARIG 64
Query: 62 RAPLAQK-VISVEEKMVPFFRAGKNLKERLNSPD 94
R P + + + ++ V F++GK LK++L D
Sbjct: 65 RNPNKPEAEVVIPQRAVVKFKSGKILKQQLKKLD 98
>gi|189463294|ref|ZP_03012079.1| hypothetical protein BACCOP_04011 [Bacteroides coprocola DSM
17136]
gi|189430024|gb|EDU99008.1| hypothetical protein BACCOP_04011 [Bacteroides coprocola DSM
17136]
Length = 91
Score = 68.3 bits (166), Expect = 4e-10, Method: Composition-based stats.
Identities = 26/86 (30%), Positives = 45/86 (52%), Gaps = 1/86 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ ++ IA +N ++ V + ++ + ++L+N V +RGFGSF V+KRA +
Sbjct: 1 MTKADIVNEIA-RNTGIDKATVLTTLEAFMDSVKESLSNDENVYLRGFGSFIVKKRAQKT 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNL 86
AR I + E +P F+ K
Sbjct: 60 ARNISKNTTIIIPEHNIPAFKPAKTF 85
>gi|298484175|ref|ZP_07002341.1| integration host factor IHF alpha subunit [Bacteroides sp. D22]
gi|298269679|gb|EFI11274.1| integration host factor IHF alpha subunit [Bacteroides sp. D22]
Length = 472
Score = 67.9 bits (165), Expect = 4e-10, Method: Composition-based stats.
Identities = 21/90 (23%), Positives = 38/90 (42%), Gaps = 1/90 (1%)
Query: 4 SSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLARA 63
L +A K+ + +D E V + QAL N V+I+G G+F + +R +
Sbjct: 8 QDLTDLLAAKHS-MTKKDAEAFVKEFFLLIEQALENEKTVKIKGLGTFKLIDVDSRESVN 66
Query: 64 PLAQKVISVEEKMVPFFRAGKNLKERLNSP 93
+ ++ F NL++ +N P
Sbjct: 67 VNTGERFQIKGHTKVSFSPDANLRDTINKP 96
>gi|218261480|ref|ZP_03476291.1| hypothetical protein PRABACTJOHN_01957 [Parabacteroides johnsonii
DSM 18315]
gi|218223998|gb|EEC96648.1| hypothetical protein PRABACTJOHN_01957 [Parabacteroides johnsonii
DSM 18315]
Length = 90
Score = 67.9 bits (165), Expect = 4e-10, Method: Composition-based stats.
Identities = 26/91 (28%), Positives = 46/91 (50%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ ++ I+ K+ ++ Q V V ++ + +L+ G V +RGFGSF ++KRA +
Sbjct: 1 MTKADIVSEIS-KSTGIDKQTVLSSVESFMDIVKSSLSQGENVYLRGFGSFVIKKRAQKT 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
AR I + E +P F+ K +
Sbjct: 60 ARNISKNTTIIIPEHNIPSFKPAKTFLNEVK 90
>gi|212550692|ref|YP_002309009.1| DNA-binding protein HU [Candidatus Azobacteroides
pseudotrichonymphae genomovar. CFP2]
gi|212548930|dbj|BAG83598.1| DNA-binding protein HU [Candidatus Azobacteroides
pseudotrichonymphae genomovar. CFP2]
Length = 102
Score = 67.9 bits (165), Expect = 4e-10, Method: Composition-based stats.
Identities = 26/90 (28%), Positives = 49/90 (54%), Gaps = 1/90 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K ++ TIA+ ++ + V ++ + E+T +L++G + +R FG+F +KRAA+
Sbjct: 1 MTKKEIVVTIAENT-GIDRESVLAVIEEFMREVTFSLSSGENIYLRFFGTFKAKKRAAKP 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
AR I + E+ VP F+ K ++
Sbjct: 60 ARNIKKNTTIFLPERYVPHFKPSDYFKNKV 89
>gi|207108675|ref|ZP_03242837.1| dna-binding protein hu [Helicobacter pylori HPKX_438_CA4C1]
Length = 89
Score = 67.9 bits (165), Expect = 4e-10, Method: Composition-based stats.
Identities = 24/89 (26%), Positives = 45/89 (50%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ I + + + ++ E+ ++ + AL+ G VE+ GFG F ++ +
Sbjct: 1 MNKAEFIDLVKEAGKYNSKREAEEAISAFTLAVETALSKGESVELIGFGKFETAEQKGKE 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKER 89
+ P + K E+K VP F+ GK LK++
Sbjct: 61 GKVPGSDKTYKTEDKRVPKFKPGKILKQK 89
>gi|189461332|ref|ZP_03010117.1| hypothetical protein BACCOP_01982 [Bacteroides coprocola DSM
17136]
gi|189431861|gb|EDV00846.1| hypothetical protein BACCOP_01982 [Bacteroides coprocola DSM
17136]
Length = 96
Score = 67.9 bits (165), Expect = 4e-10, Method: Composition-based stats.
Identities = 24/92 (26%), Positives = 45/92 (48%), Gaps = 1/92 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M LIG ++++ +D +++ + M + L G + I+ FG+F V+K+ R+
Sbjct: 1 MNNKELIGELSRRL-GYTNKDAARLLTSVTGIMGEELQEGKVIAIQDFGTFEVKKKMERI 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
P+ ++ V K++ FR KERL
Sbjct: 60 TVNPVTKQRFLVPPKLILNFRPSNLWKERLKK 91
>gi|160886673|ref|ZP_02067676.1| hypothetical protein BACOVA_04685 [Bacteroides ovatus ATCC 8483]
gi|298383516|ref|ZP_06993077.1| DNA-binding protein HU [Bacteroides sp. 1_1_14]
gi|156107084|gb|EDO08829.1| hypothetical protein BACOVA_04685 [Bacteroides ovatus ATCC 8483]
gi|298263120|gb|EFI05983.1| DNA-binding protein HU [Bacteroides sp. 1_1_14]
Length = 93
Score = 67.9 bits (165), Expect = 4e-10, Method: Composition-based stats.
Identities = 22/94 (23%), Positives = 43/94 (45%), Gaps = 1/94 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ ++ I+ + + V +V +E + +++ G V +RGFGSF +++RA +
Sbjct: 1 MTKAEIVAQIS-RQSGIEKTVVMTVVESFMENVKESMVAGNEVFLRGFGSFVIKRRAEKT 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSPD 94
AR I + +P F+ K +
Sbjct: 60 ARNISKNTTIKIPAHNIPAFKPAKAFLNAVKENK 93
>gi|331271066|ref|YP_004385777.1| DNA-binding protein HU1 [Clostridium botulinum BKT015925]
gi|329127458|gb|AEB77402.1| DNA-binding protein HU1 [Clostridium botulinum BKT015925]
Length = 95
Score = 67.9 bits (165), Expect = 4e-10, Method: Composition-based stats.
Identities = 27/96 (28%), Positives = 54/96 (56%), Gaps = 4/96 (4%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ L+ ++A+K L +D E + +E + +AL G ++++ GFG+F R++ R
Sbjct: 1 MNKTELVNSMAEK-AVLTKKDAELALKAFIESVKEALKEGKKIQLIGFGTFETREQKGRT 59
Query: 61 ARA---PLAQKVISVEEKMVPFFRAGKNLKERLNSP 93
+ + ++K+VP F+AG+ LKE +++
Sbjct: 60 GTINFGSKKGETYTSKDKIVPVFKAGRQLKEIVDNK 95
>gi|283852590|ref|ZP_06369857.1| histone family protein DNA-binding protein [Desulfovibrio sp.
FW1012B]
gi|283572038|gb|EFC20031.1| histone family protein DNA-binding protein [Desulfovibrio sp.
FW1012B]
Length = 86
Score = 67.9 bits (165), Expect = 4e-10, Method: Composition-based stats.
Identities = 12/83 (14%), Positives = 32/83 (38%), Gaps = 1/83 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M ++ I A ++ + + + + + + + G V+ G+F+ R
Sbjct: 1 MTQTEFIKRFATES-GMTQDAAKNCLALAGQMVEATMRAGESVKFPCLGTFTPVATKERQ 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAG 83
R P + +++ + F+A
Sbjct: 60 GRNPRTGEPLTIPAGVRIKFKAA 82
>gi|300021566|ref|YP_003754177.1| histone family protein DNA-binding protein [Hyphomicrobium
denitrificans ATCC 51888]
gi|299523387|gb|ADJ21856.1| histone family protein DNA-binding protein [Hyphomicrobium
denitrificans ATCC 51888]
Length = 107
Score = 67.9 bits (165), Expect = 4e-10, Method: Composition-based stats.
Identities = 24/85 (28%), Positives = 42/85 (49%), Gaps = 1/85 (1%)
Query: 6 LIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLARAPL 65
+ +A+ + ++ + ++ L+ + + L G R+ I G G VRKR AR+ R P
Sbjct: 24 IAAALAEAH-EIPKKQSIALLEDLVTTIGKHLKKGARIRIGGLGVLQVRKRPARMGRNPA 82
Query: 66 AQKVISVEEKMVPFFRAGKNLKERL 90
+ I ++ FRA K LKE +
Sbjct: 83 TGEAIKIKASKKIAFRAAKELKELV 107
>gi|154490934|ref|ZP_02030875.1| hypothetical protein PARMER_00851 [Parabacteroides merdae ATCC
43184]
gi|154088682|gb|EDN87726.1| hypothetical protein PARMER_00851 [Parabacteroides merdae ATCC
43184]
Length = 90
Score = 67.9 bits (165), Expect = 4e-10, Method: Composition-based stats.
Identities = 26/91 (28%), Positives = 46/91 (50%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ ++ I+ K+ ++ Q V V ++ + +L+ G V +RGFGSF ++KRA +
Sbjct: 1 MTKADIVSEIS-KSTGIDKQTVLNSVESFMDIVKSSLSQGENVYLRGFGSFVIKKRAQKT 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
AR I + E +P F+ K +
Sbjct: 60 ARNISKNTTIIIPEHNIPSFKPAKTFLNEVK 90
>gi|282877163|ref|ZP_06286001.1| DNA-binding protein HU [Prevotella buccalis ATCC 35310]
gi|281300655|gb|EFA92986.1| DNA-binding protein HU [Prevotella buccalis ATCC 35310]
Length = 92
Score = 67.9 bits (165), Expect = 4e-10, Method: Composition-based stats.
Identities = 24/93 (25%), Positives = 45/93 (48%), Gaps = 2/93 (2%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQAL-ANGGRVEIRGFGSFSVRKRAAR 59
M K+ +I I+ L ++V +V + + +L V +RGFGSF ++ RAA+
Sbjct: 1 MTKADIINEISMST-GLQKKEVAAVVECFMSTVKDSLLEKRENVYLRGFGSFIIKHRAAK 59
Query: 60 LARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
AR I+++ +P F+ K+ + +
Sbjct: 60 TARNIQKNTTITIDAHDLPSFKPSKSFINAMKA 92
>gi|260170243|ref|ZP_05756655.1| putative integration host factor IHF alpha subunit [Bacteroides
sp. D2]
gi|315918606|ref|ZP_07914846.1| conserved hypothetical protein [Bacteroides sp. D2]
gi|313692481|gb|EFS29316.1| conserved hypothetical protein [Bacteroides sp. D2]
Length = 470
Score = 67.9 bits (165), Expect = 4e-10, Method: Composition-based stats.
Identities = 21/90 (23%), Positives = 38/90 (42%), Gaps = 1/90 (1%)
Query: 4 SSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLARA 63
L +A K+ + +D E V + QAL N V+I+G G+F + +R +
Sbjct: 8 QDLTDLLAAKHS-MTKKDAEAFVKEFFLLIEQALENEKTVKIKGLGTFKLIDVDSRESVN 66
Query: 64 PLAQKVISVEEKMVPFFRAGKNLKERLNSP 93
+ ++ F NL++ +N P
Sbjct: 67 VNTGERFQIKGHTKVSFSPDANLRDTINKP 96
>gi|78776705|ref|YP_393020.1| histone-like DNA-binding protein [Sulfurimonas denitrificans DSM
1251]
gi|78497245|gb|ABB43785.1| Histone-like DNA-binding protein [Sulfurimonas denitrificans DSM
1251]
Length = 94
Score = 67.9 bits (165), Expect = 5e-10, Method: Composition-based stats.
Identities = 25/90 (27%), Positives = 41/90 (45%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ + + + E + E + AL V + GFGSF + +
Sbjct: 1 MNKAQFVELVQASGNYKTKVEAEAAIKAFTEAVASALVKKEDVSLVGFGSFGASLQKGKS 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
+ P K + ++KMVP F+AGK LK+R+
Sbjct: 61 GKVPGTDKTYTTKDKMVPKFKAGKGLKDRV 90
>gi|281420827|ref|ZP_06251826.1| DNA-binding protein HU [Prevotella copri DSM 18205]
gi|281405119|gb|EFB35799.1| DNA-binding protein HU [Prevotella copri DSM 18205]
Length = 94
Score = 67.9 bits (165), Expect = 5e-10, Method: Composition-based stats.
Identities = 26/93 (27%), Positives = 48/93 (51%), Gaps = 2/93 (2%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALA-NGGRVEIRGFGSFSVRKRAAR 59
M K+ +I +A + ++V +V +EE+ + L V +RGFGSF+++ RAA+
Sbjct: 1 MTKADIINEVAIAT-GMPKKEVGTVVEAFMEEVKKCLIEKKDNVYLRGFGSFNIKHRAAK 59
Query: 60 LARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
AR I++ +P F+ K+ E + +
Sbjct: 60 TARNISKNTTITIPAHDLPSFKPSKSFIEEMQN 92
>gi|251773075|gb|EES53631.1| histone family protein DNA-binding protein [Leptospirillum
ferrodiazotrophum]
Length = 84
Score = 67.9 bits (165), Expect = 5e-10, Method: Composition-based stats.
Identities = 27/80 (33%), Positives = 39/80 (48%), Gaps = 1/80 (1%)
Query: 13 KNPKLNYQDVEKIVNMLLEEMTQALAN-GGRVEIRGFGSFSVRKRAARLARAPLAQKVIS 71
+ K+N +N +E + ++L G RV + GFG+FS KR AR R P + I
Sbjct: 5 QAAKINKTQANDALNAAVEAIKKSLKKDGERVTLPGFGTFSTAKRKARTGRNPRTGQAIK 64
Query: 72 VEEKMVPFFRAGKNLKERLN 91
+ VP F AGK K +
Sbjct: 65 IPAMRVPKFTAGKAFKAAVK 84
>gi|162148370|ref|YP_001602831.1| DNA-binding protein HU-beta [Gluconacetobacter diazotrophicus PAl
5]
gi|209542995|ref|YP_002275224.1| histone family protein DNA-binding protein [Gluconacetobacter
diazotrophicus PAl 5]
gi|161786947|emb|CAP56531.1| putative DNA-binding protein HU-beta [Gluconacetobacter
diazotrophicus PAl 5]
gi|209530672|gb|ACI50609.1| histone family protein DNA-binding protein [Gluconacetobacter
diazotrophicus PAl 5]
Length = 89
Score = 67.9 bits (165), Expect = 5e-10, Method: Composition-based stats.
Identities = 22/90 (24%), Positives = 38/90 (42%), Gaps = 1/90 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ I + + + K + L+ + L G + FG+F+V K AR
Sbjct: 1 MSKA-FIAAVLQDSLACTGVAAGKAADDLITAIVATLQEEGGFTLPSFGTFTVHKTKARK 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
A P + + V+ F+A NLK+ +
Sbjct: 60 ALNPRTGEPVKVKAGKTVRFKASPNLKKAV 89
>gi|189465619|ref|ZP_03014404.1| hypothetical protein BACINT_01977 [Bacteroides intestinalis DSM
17393]
gi|189437893|gb|EDV06878.1| hypothetical protein BACINT_01977 [Bacteroides intestinalis DSM
17393]
Length = 433
Score = 67.9 bits (165), Expect = 5e-10, Method: Composition-based stats.
Identities = 19/88 (21%), Positives = 40/88 (45%), Gaps = 1/88 (1%)
Query: 6 LIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLARAPL 65
LI +A+K+ ++ D E V + + ++L + V+I+G G+F + +R +
Sbjct: 10 LIELLAEKH-GMDKTDAESFVKEFFQLIEESLESDKYVKIKGLGTFKLIDVDSRESVNIN 68
Query: 66 AQKVISVEEKMVPFFRAGKNLKERLNSP 93
+ ++ F LK+ +N P
Sbjct: 69 TGERFEIQGHTKVSFTPEPTLKDLINKP 96
>gi|303237141|ref|ZP_07323711.1| DNA-binding protein HU [Prevotella disiens FB035-09AN]
gi|302482528|gb|EFL45553.1| DNA-binding protein HU [Prevotella disiens FB035-09AN]
Length = 92
Score = 67.9 bits (165), Expect = 5e-10, Method: Composition-based stats.
Identities = 27/93 (29%), Positives = 44/93 (47%), Gaps = 2/93 (2%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQAL-ANGGRVEIRGFGSFSVRKRAAR 59
M K+ +I IA ++ +DV +V +E + +L + V +RGFGSF V+ RA +
Sbjct: 1 MTKADIINEIASST-GISKKDVSAVVESFMEAIKDSLLKSKENVYLRGFGSFIVKHRAEK 59
Query: 60 LARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
AR I++ P F+ K E +
Sbjct: 60 TARNISKNTTITIPAHDFPSFKPAKTFIEDMKK 92
>gi|319758735|gb|ADV70677.1| nucleoid DNA-binding protein [Streptococcus suis JS14]
Length = 89
Score = 67.9 bits (165), Expect = 5e-10, Method: Composition-based stats.
Identities = 23/70 (32%), Positives = 35/70 (50%), Gaps = 1/70 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K LI +A+ L +D V+ + + LA G +V++ GFG+F VR+R+AR
Sbjct: 3 NKQDLIAKVAEATS-LTKKDSAAAVDAVFGAVADYLAAGEKVQLIGFGNFEVRERSARTG 61
Query: 62 RAPLAQKVIS 71
R P I
Sbjct: 62 RNPQTGAEIK 71
>gi|262277180|ref|ZP_06054973.1| integration host factor subunit alpha (IHF-alpha) [alpha
proteobacterium HIMB114]
gi|262224283|gb|EEY74742.1| integration host factor subunit alpha (IHF-alpha) [alpha
proteobacterium HIMB114]
Length = 95
Score = 67.9 bits (165), Expect = 5e-10, Method: Composition-based stats.
Identities = 21/91 (23%), Positives = 45/91 (49%), Gaps = 1/91 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
+ L + K ++ + K V+++ E + + G +V++ FGSF V+ + AR+
Sbjct: 6 TRQDLYD-LTYKELGISKNECIKFVDLVFESILKNFEEGNKVKVSLFGSFDVKDKKARIG 64
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P ++ + + V F+ K L +++N
Sbjct: 65 RNPKTKEEKEISSRRVVTFKPSKFLSKKINK 95
>gi|260592146|ref|ZP_05857604.1| DNA-binding protein HU [Prevotella veroralis F0319]
gi|260535780|gb|EEX18397.1| DNA-binding protein HU [Prevotella veroralis F0319]
Length = 93
Score = 67.9 bits (165), Expect = 5e-10, Method: Composition-based stats.
Identities = 25/94 (26%), Positives = 43/94 (45%), Gaps = 2/94 (2%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQAL-ANGGRVEIRGFGSFSVRKRAAR 59
M K+ +I IA + +DV +V ++ + +L V +RGFGSF ++ RA +
Sbjct: 1 MTKADIINEIATST-GIAKKDVSAVVESFMDSIKDSLLGKKENVYLRGFGSFIIKHRAEK 59
Query: 60 LARAPLAQKVISVEEKMVPFFRAGKNLKERLNSP 93
AR I++ P F+ K E + +
Sbjct: 60 TARNISKNTTITIPAHDFPSFKPAKTFIEDMKNK 93
>gi|162146838|ref|YP_001601299.1| DNA-binding protein HU-beta [Gluconacetobacter diazotrophicus PAl
5]
gi|161785415|emb|CAP54963.1| putative DNA-binding protein HU-beta [Gluconacetobacter
diazotrophicus PAl 5]
Length = 89
Score = 67.9 bits (165), Expect = 5e-10, Method: Composition-based stats.
Identities = 21/90 (23%), Positives = 37/90 (41%), Gaps = 1/90 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ I + + + K + L+ + L G + FG+F+V K AR
Sbjct: 1 MSKA-FIAAVLQDSLACTGVAATKAADDLVGAIVAELKQEGGFTLPSFGTFTVHKTKARK 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
A P + + V+ F+A LK+ +
Sbjct: 60 ALNPRTGEPVKVKAGKTVRFKASPVLKKAV 89
>gi|269102460|ref|ZP_06155157.1| integration host factor alpha subunit [Photobacterium damselae
subsp. damselae CIP 102761]
gi|268162358|gb|EEZ40854.1| integration host factor alpha subunit [Photobacterium damselae
subsp. damselae CIP 102761]
Length = 72
Score = 67.9 bits (165), Expect = 5e-10, Method: Composition-based stats.
Identities = 23/71 (32%), Positives = 39/71 (54%)
Query: 26 VNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLARAPLAQKVISVEEKMVPFFRAGKN 85
+ + EE+ +AL NG +V++ GFG+F +R + R R P + I + + V FR G+
Sbjct: 1 MEVFFEEVRKALENGEQVKLSGFGNFDLRDKNERPGRNPKTGEDIPITARRVVTFRPGQK 60
Query: 86 LKERLNSPDST 96
LK R+ +
Sbjct: 61 LKARVEKLEVK 71
>gi|282859928|ref|ZP_06269016.1| DNA-binding protein HU [Prevotella bivia JCVIHMP010]
gi|282587331|gb|EFB92548.1| DNA-binding protein HU [Prevotella bivia JCVIHMP010]
Length = 91
Score = 67.9 bits (165), Expect = 5e-10, Method: Composition-based stats.
Identities = 32/92 (34%), Positives = 53/92 (57%), Gaps = 1/92 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI IA + L+ D +K ++ ++ + +ALA G ++++ GFG+F+V +R AR
Sbjct: 1 MNKSELIDQIAA-SSDLSKADSKKALDATIKAIKEALAKGDKIQLVGFGTFAVNERPARE 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
P ++ I + K V F+AG L E +N
Sbjct: 60 GINPSTKEKIQIAAKKVAKFKAGAELTEAINK 91
>gi|260889058|ref|ZP_05900321.1| DNA-binding protein HU [Leptotrichia hofstadii F0254]
gi|260861118|gb|EEX75618.1| DNA-binding protein HU [Leptotrichia hofstadii F0254]
Length = 99
Score = 67.9 bits (165), Expect = 5e-10, Method: Composition-based stats.
Identities = 22/74 (29%), Positives = 36/74 (48%), Gaps = 1/74 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K + AK + + E++VN L + L G ++ G+G+F V++RAAR
Sbjct: 7 MSKKEFVDAYAKATGE-TKKRAEELVNAFLGTAEEFLVKGESIQFVGWGTFEVKERAARE 65
Query: 61 ARAPLAQKVISVEE 74
R P K I ++
Sbjct: 66 GRNPSTGKPIKIDA 79
>gi|238752802|ref|ZP_04614270.1| DNA-binding protein HU-alpha [Yersinia rohdei ATCC 43380]
gi|238709000|gb|EEQ01250.1| DNA-binding protein HU-alpha [Yersinia rohdei ATCC 43380]
Length = 67
Score = 67.9 bits (165), Expect = 5e-10, Method: Composition-based stats.
Identities = 24/67 (35%), Positives = 36/67 (53%)
Query: 26 VNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLARAPLAQKVISVEEKMVPFFRAGKN 85
+ L +T++L +G V++ GFG+F V R R R P K I + VP F +GK
Sbjct: 1 MESTLAAITESLKDGDPVQLVGFGTFKVNHRNERTGRNPQTGKEIKIAAANVPAFVSGKA 60
Query: 86 LKERLNS 92
LK+ + S
Sbjct: 61 LKDSVKS 67
>gi|189460994|ref|ZP_03009779.1| hypothetical protein BACCOP_01641 [Bacteroides coprocola DSM
17136]
gi|198277723|ref|ZP_03210254.1| hypothetical protein BACPLE_03946 [Bacteroides plebeius DSM
17135]
gi|265768064|ref|ZP_06095446.1| integration host factor, beta subunit [Bacteroides sp. 2_1_16]
gi|319643873|ref|ZP_07998466.1| hypothetical protein HMPREF9011_04069 [Bacteroides sp. 3_1_40A]
gi|189432333|gb|EDV01318.1| hypothetical protein BACCOP_01641 [Bacteroides coprocola DSM
17136]
gi|198269420|gb|EDY93690.1| hypothetical protein BACPLE_03946 [Bacteroides plebeius DSM
17135]
gi|263252315|gb|EEZ23851.1| integration host factor, beta subunit [Bacteroides sp. 2_1_16]
gi|317384614|gb|EFV65579.1| hypothetical protein HMPREF9011_04069 [Bacteroides sp. 3_1_40A]
Length = 94
Score = 67.5 bits (164), Expect = 5e-10, Method: Composition-based stats.
Identities = 22/95 (23%), Positives = 45/95 (47%), Gaps = 1/95 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS ++ I+ + ++ + V ++ + E+ +L V +RGFGSF V+KRA +
Sbjct: 1 MTKSEIVKEISART-GIDGKAVLAVLEGFMNEVKTSLGKEENVYLRGFGSFIVKKRAQKT 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDS 95
AR + + +P F+ + + ++
Sbjct: 60 ARNISKNTTMIIPAHNIPAFKPSDEFLKMVKQQNA 94
>gi|325142000|gb|EGC64435.1| integration host factor subunit alpha [Neisseria meningitidis
961-5945]
Length = 72
Score = 67.5 bits (164), Expect = 5e-10, Method: Composition-based stats.
Identities = 19/64 (29%), Positives = 33/64 (51%)
Query: 27 NMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLARAPLAQKVISVEEKMVPFFRAGKNL 86
+ EE+ LA+G ++I GFG+F +R + R R P + + + + V F A + L
Sbjct: 1 ELFFEEIRSTLASGEEIKISGFGNFQLRDKPQRPGRNPKTGEEVPITARRVVTFHASQKL 60
Query: 87 KERL 90
K +
Sbjct: 61 KSMV 64
>gi|237720680|ref|ZP_04551161.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
gi|229449515|gb|EEO55306.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
Length = 470
Score = 67.5 bits (164), Expect = 5e-10, Method: Composition-based stats.
Identities = 21/90 (23%), Positives = 38/90 (42%), Gaps = 1/90 (1%)
Query: 4 SSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLARA 63
L +A K+ + +D E V + QAL N V+I+G G+F + +R +
Sbjct: 8 QDLTDLLAAKHS-MTKKDAEAFVKEFFLLIEQALENEKTVKIKGLGTFKLIDVDSRESVN 66
Query: 64 PLAQKVISVEEKMVPFFRAGKNLKERLNSP 93
+ ++ F NL++ +N P
Sbjct: 67 VNTGERFQIKGHTKVSFSPDANLRDTINKP 96
>gi|198277146|ref|ZP_03209677.1| hypothetical protein BACPLE_03354 [Bacteroides plebeius DSM
17135]
gi|198269644|gb|EDY93914.1| hypothetical protein BACPLE_03354 [Bacteroides plebeius DSM
17135]
Length = 91
Score = 67.5 bits (164), Expect = 5e-10, Method: Composition-based stats.
Identities = 26/86 (30%), Positives = 43/86 (50%), Gaps = 1/86 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ ++ IA KN ++ V + + + ++L+ V +RGFGSF V+KRA +
Sbjct: 1 MTKADIVNEIA-KNTGIDKATVLATLEAFMGSVKESLSKDENVYLRGFGSFIVKKRAQKT 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNL 86
AR I + E +P F+ K
Sbjct: 60 ARNISKNTTIIIPEHNIPAFKPAKTF 85
>gi|302544965|ref|ZP_07297307.1| DNA-binding protein HU [Streptomyces hygroscopicus ATCC 53653]
gi|307331132|ref|ZP_07610259.1| histone family protein DNA-binding protein [Streptomyces
violaceusniger Tu 4113]
gi|302462583|gb|EFL25676.1| DNA-binding protein HU [Streptomyces himastatinicus ATCC 53653]
gi|306883212|gb|EFN14271.1| histone family protein DNA-binding protein [Streptomyces
violaceusniger Tu 4113]
Length = 93
Score = 67.5 bits (164), Expect = 5e-10, Method: Composition-based stats.
Identities = 26/94 (27%), Positives = 44/94 (46%), Gaps = 2/94 (2%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGG-RVEIRGFGSFSVRKRAAR 59
M +S L+ ++++ ++ +D + ++ L E + +A G +V I GF +F RAAR
Sbjct: 1 MNRSELVAALSER-AEVTRKDADAVLAALAEVTGEVVAKGDEKVTIPGFLTFERTHRAAR 59
Query: 60 LARAPLAQKVISVEEKMVPFFRAGKNLKERLNSP 93
AR P + I + AG LKE
Sbjct: 60 TARNPQTGEPIEIPAGYSVKVSAGSKLKEAAKGK 93
>gi|188997158|ref|YP_001931409.1| histone family protein DNA-binding protein [Sulfurihydrogenibium
sp. YO3AOP1]
gi|237756500|ref|ZP_04585032.1| DNA-binding protein HU 1 [Sulfurihydrogenibium yellowstonense
SS-5]
gi|188932225|gb|ACD66855.1| histone family protein DNA-binding protein [Sulfurihydrogenibium
sp. YO3AOP1]
gi|237691348|gb|EEP60424.1| DNA-binding protein HU 1 [Sulfurihydrogenibium yellowstonense
SS-5]
Length = 98
Score = 67.5 bits (164), Expect = 5e-10, Method: Composition-based stats.
Identities = 27/98 (27%), Positives = 55/98 (56%), Gaps = 5/98 (5%)
Query: 1 MIKSSLIGTIA-KKNPKLNYQDVEKIVNMLLEEMTQALAN----GGRVEIRGFGSFSVRK 55
M ++ ++ IA + L+ +++ IVN + ++ L N G +V I GFG+F ++K
Sbjct: 1 MKRADIVNKIARNEKITLDKKEIATIVNETFDLISDYLTNDIHEGKKVMISGFGTFVIKK 60
Query: 56 RAARLARAPLAQKVISVEEKMVPFFRAGKNLKERLNSP 93
R +++ R P + + +++ F+ GK LK+++NS
Sbjct: 61 RKSKIGRNPKTGEEKLIPDRLGITFKPGKLLKKKVNSK 98
>gi|294809493|ref|ZP_06768196.1| DNA-binding protein HU [Bacteroides xylanisolvens SD CC 1b]
gi|294443311|gb|EFG12075.1| DNA-binding protein HU [Bacteroides xylanisolvens SD CC 1b]
Length = 144
Score = 67.5 bits (164), Expect = 6e-10, Method: Composition-based stats.
Identities = 21/90 (23%), Positives = 38/90 (42%), Gaps = 1/90 (1%)
Query: 4 SSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLARA 63
L +A K+ + +D E V + QAL N V+I+G G+F + +R +
Sbjct: 8 QDLTDLLAAKHS-MTKKDAEAFVKEFFLLIEQALENEKTVKIKGLGTFKLIDVDSRESVN 66
Query: 64 PLAQKVISVEEKMVPFFRAGKNLKERLNSP 93
+ ++ F NL++ +N P
Sbjct: 67 VNTGERFQIKGHTKVSFSPDANLRDTINKP 96
>gi|182438375|ref|YP_001826094.1| putative DNA-binding protein HU 1 [Streptomyces griseus subsp.
griseus NBRC 13350]
gi|239941634|ref|ZP_04693571.1| putative DNA-binding protein HU 1 [Streptomyces roseosporus NRRL
15998]
gi|239988096|ref|ZP_04708760.1| putative DNA-binding protein HU 1 [Streptomyces roseosporus NRRL
11379]
gi|282865174|ref|ZP_06274227.1| histone family protein DNA-binding protein [Streptomyces sp.
ACTE]
gi|291445076|ref|ZP_06584466.1| DNA-binding protein Hu 1 [Streptomyces roseosporus NRRL 15998]
gi|326779026|ref|ZP_08238291.1| histone family protein DNA-binding protein [Streptomyces cf.
griseus XylebKG-1]
gi|178466891|dbj|BAG21411.1| putative DNA-binding protein Hu 1 [Streptomyces griseus subsp.
griseus NBRC 13350]
gi|282560097|gb|EFB65646.1| histone family protein DNA-binding protein [Streptomyces sp.
ACTE]
gi|291348023|gb|EFE74927.1| DNA-binding protein Hu 1 [Streptomyces roseosporus NRRL 15998]
gi|320010510|gb|ADW05360.1| histone family protein DNA-binding protein [Streptomyces
flavogriseus ATCC 33331]
gi|326659359|gb|EGE44205.1| histone family protein DNA-binding protein [Streptomyces cf.
griseus XylebKG-1]
Length = 93
Score = 67.5 bits (164), Expect = 6e-10, Method: Composition-based stats.
Identities = 27/94 (28%), Positives = 44/94 (46%), Gaps = 2/94 (2%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGG-RVEIRGFGSFSVRKRAAR 59
M +S L+ +A + ++ +D + ++ L E + + +A G +V I GF +F RAAR
Sbjct: 1 MNRSELVAALADR-AEVTRKDADAVLAALAETVGEIVAKGDEKVTIPGFLTFERTHRAAR 59
Query: 60 LARAPLAQKVISVEEKMVPFFRAGKNLKERLNSP 93
AR P I++ AG LKE
Sbjct: 60 TARNPQTGDPINIPAGYSVKVSAGSKLKEAAKGK 93
>gi|4091109|gb|AAC98965.1| unknown [Mycoplasma hyopneumoniae]
Length = 96
Score = 67.5 bits (164), Expect = 6e-10, Method: Composition-based stats.
Identities = 25/90 (27%), Positives = 40/90 (44%), Gaps = 1/90 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K LI IA K L +++E ++N + G++ I FG+F + A
Sbjct: 7 MNKKELIEQIAIKT-NLPIKNIELVLNEFFGITADVVKKQGKLVINSFGTFQGVFKPASS 65
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
+ PL + I V K F+ K LK+ +
Sbjct: 66 SFNPLTKTQIQVNAKTTVRFKPSKVLKDFI 95
>gi|332885920|gb|EGK06164.1| hypothetical protein HMPREF9456_00038 [Dysgonomonas mossii DSM
22836]
Length = 91
Score = 67.5 bits (164), Expect = 6e-10, Method: Composition-based stats.
Identities = 26/90 (28%), Positives = 44/90 (48%), Gaps = 1/90 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ ++ IA KN ++ V K V ++ + +L+ V +RGFGSF V+ RA +
Sbjct: 1 MTKADIVNEIA-KNTGIDKATVLKTVESFMDVVKDSLSKNENVYLRGFGSFIVKTRAQKT 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
AR I + +P F+ K ++
Sbjct: 60 ARNISKNTTIIIPAHSIPAFKPAKTFITQV 89
>gi|257437801|ref|ZP_05613556.1| DNA binding protein HU [Faecalibacterium prausnitzii A2-165]
gi|257199724|gb|EEU98008.1| DNA binding protein HU [Faecalibacterium prausnitzii A2-165]
Length = 103
Score = 67.5 bits (164), Expect = 6e-10, Method: Composition-based stats.
Identities = 25/90 (27%), Positives = 43/90 (47%), Gaps = 1/90 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M +S +I T+A+K VE ++ L +++ L +V I GFG F +R R +
Sbjct: 1 MTRSQMIETVARKT-GFTEAQVETTMDALFDQIADCLRADEKVTIAGFGRFEMRPRKPKA 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
P + +E +P F+A K++L
Sbjct: 60 YTNPKTKVSSRLESTSIPGFKASGRFKQKL 89
>gi|328552929|gb|AEB23421.1| putative HU-related DNA-binding protein; phage SPbeta [Bacillus
amyloliquefaciens TA208]
Length = 91
Score = 67.5 bits (164), Expect = 6e-10, Method: Composition-based stats.
Identities = 21/73 (28%), Positives = 37/73 (50%), Gaps = 1/73 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ G +A+K + ++ V + + + L G ++I G G+F VR+RAAR
Sbjct: 1 MNKTEFAGAVAEKL-GVTKKEATPKVEAVFNVIVETLTKGESIKIPGVGTFEVRERAARK 59
Query: 61 ARAPLAQKVISVE 73
R P + + I +
Sbjct: 60 GRNPKSGEEIDIP 72
>gi|315608921|ref|ZP_07883893.1| conserved hypothetical protein [Prevotella buccae ATCC 33574]
gi|315249301|gb|EFU29318.1| conserved hypothetical protein [Prevotella buccae ATCC 33574]
Length = 493
Score = 67.5 bits (164), Expect = 6e-10, Method: Composition-based stats.
Identities = 18/96 (18%), Positives = 40/96 (41%), Gaps = 4/96 (4%)
Query: 1 MIK---SSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRA 57
M + + L ++ K+ ++ + E V ++ + L V+I+ FG+F +
Sbjct: 6 MNRIGITELARMLSSKH-NMSQANAENFVRLMFAVVGDGLEQEKLVKIKSFGTFKMGSVK 64
Query: 58 ARLARAPLAQKVISVEEKMVPFFRAGKNLKERLNSP 93
R + + I +E + F L++ +N P
Sbjct: 65 DRESVDVNTGERIVIEGRNKINFTPDNALRDFVNRP 100
>gi|85057759|ref|YP_456675.1| DNA-binding protein HU [Aster yellows witches'-broom phytoplasma
AYWB]
gi|84789864|gb|ABC65596.1| DNA-binding protein HU [Aster yellows witches'-broom phytoplasma
AYWB]
Length = 106
Score = 67.5 bits (164), Expect = 6e-10, Method: Composition-based stats.
Identities = 27/90 (30%), Positives = 43/90 (47%), Gaps = 4/90 (4%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGG---RVEIRGFGSFSVRKRA 57
M K + +A+KN + ++ K +N +E + Q +V + GFG+F + R
Sbjct: 1 MNKLKFLRKLAEKN-GITKKEANKFLNNFIELIYQTFEETEEYKKVTLTGFGTFGAKYRN 59
Query: 58 ARLARAPLAQKVISVEEKMVPFFRAGKNLK 87
AR + P K I + K VP F+ K LK
Sbjct: 60 AREGKNPRTGKTIYIPAKKVPTFKFSKLLK 89
>gi|332826704|gb|EGJ99526.1| hypothetical protein HMPREF9455_04122 [Dysgonomonas gadei ATCC
BAA-286]
Length = 91
Score = 67.5 bits (164), Expect = 6e-10, Method: Composition-based stats.
Identities = 26/86 (30%), Positives = 42/86 (48%), Gaps = 1/86 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ ++ IA KN ++ V K V ++ + +L+ V +RGFGSF V+ RA +
Sbjct: 1 MTKADIVNEIA-KNTGIDKATVLKTVESFMDVVKDSLSKNENVYLRGFGSFIVKTRAQKT 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNL 86
AR I + +P F+ K
Sbjct: 60 ARNISKNTTIIIPAHSIPAFKPAKTF 85
>gi|237723843|ref|ZP_04554324.1| DNA-binding protein HU [Bacteroides sp. D4]
gi|229437858|gb|EEO47935.1| DNA-binding protein HU [Bacteroides dorei 5_1_36/D4]
Length = 94
Score = 67.5 bits (164), Expect = 6e-10, Method: Composition-based stats.
Identities = 23/95 (24%), Positives = 45/95 (47%), Gaps = 1/95 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS ++ I+ + ++ + V +V + E+ +L V +RGFGSF V+KRA +
Sbjct: 1 MTKSEIVKEISART-GIDGKAVLAVVEGFMNEVKTSLGKEENVYLRGFGSFIVKKRAQKT 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDS 95
AR + + +P F+ + + ++
Sbjct: 60 ARNISKNTAMIIPAHNIPAFKPSDEFLKMVKQQNA 94
>gi|255015828|ref|ZP_05287954.1| putative histone-like protein [Bacteroides sp. 2_1_7]
gi|256841777|ref|ZP_05547283.1| integration host factor, alpha subunit [Parabacteroides sp. D13]
gi|298376992|ref|ZP_06986946.1| DNA-binding protein HU [Bacteroides sp. 3_1_19]
gi|256736671|gb|EEU49999.1| integration host factor, alpha subunit [Parabacteroides sp. D13]
gi|298265976|gb|EFI07635.1| DNA-binding protein HU [Bacteroides sp. 3_1_19]
Length = 91
Score = 67.5 bits (164), Expect = 6e-10, Method: Composition-based stats.
Identities = 24/92 (26%), Positives = 49/92 (53%), Gaps = 1/92 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI ++K+ + +++ I+ L + + G +V I+GFG ++ R + +RL
Sbjct: 1 MNKSQLIEELSKRVGN-DKEEIRYILEELNNIILEKTRAGEKVCIQGFGVYTPRLQTSRL 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
AR P + + + + + + F+ NL + +N
Sbjct: 60 ARNPKSGETLMLIPRTIVHFKCAPNLLKEINK 91
>gi|282881455|ref|ZP_06290129.1| DNA-binding protein HU [Prevotella timonensis CRIS 5C-B1]
gi|281304681|gb|EFA96767.1| DNA-binding protein HU [Prevotella timonensis CRIS 5C-B1]
Length = 95
Score = 67.5 bits (164), Expect = 6e-10, Method: Composition-based stats.
Identities = 27/96 (28%), Positives = 45/96 (46%), Gaps = 1/96 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M I +A++ + + +VN+L+E M G V I FG+F ++KR R+
Sbjct: 1 MNNKEFIAELAQR-CGYTQEKTQNLVNILVEAMASNFDEGEAVSIPSFGTFEIKKRLERI 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDST 96
P K + V K+V FR +KE+L ++
Sbjct: 60 LVNPSTGKRMMVPPKLVLNFRPTPLVKEQLKKGGNS 95
>gi|325297733|ref|YP_004257650.1| histone family protein DNA-binding protein [Bacteroides
salanitronis DSM 18170]
gi|324317286|gb|ADY35177.1| histone family protein DNA-binding protein [Bacteroides
salanitronis DSM 18170]
Length = 97
Score = 67.5 bits (164), Expect = 6e-10, Method: Composition-based stats.
Identities = 25/92 (27%), Positives = 45/92 (48%), Gaps = 1/92 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M L +A++ QD ++VN ++ M++ L G + + FG+F V+K R+
Sbjct: 1 MNNKELTNELARRL-GYENQDAAQLVNSMVTMMSEQLQEGKTLVLADFGTFEVKKELERI 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
PL ++ V K+V F+ KE+L +
Sbjct: 60 EVNPLTKQRFLVPPKLVLTFKPAAAFKEKLKN 91
>gi|313664931|ref|YP_004046802.1| DNA-binding protein HU [Mycoplasma leachii PG50]
gi|312949541|gb|ADR24137.1| DNA-binding protein HU [Mycoplasma leachii PG50]
Length = 92
Score = 67.5 bits (164), Expect = 6e-10, Method: Composition-based stats.
Identities = 23/90 (25%), Positives = 38/90 (42%), Gaps = 1/90 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K LI I + +++ + V I + E + + L + I FG F V ++ +R
Sbjct: 1 MNKKELISEIVLET-EVSKKTVNSIFDKTFELIAKILIKDKEISIPDFGKFVVLQKDSRK 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
P + I + F+ K LKE L
Sbjct: 60 GINPKTGEQIIIPASKTAKFKPAKKLKELL 89
>gi|282879045|ref|ZP_06287805.1| DNA-binding protein HU [Prevotella buccalis ATCC 35310]
gi|281298779|gb|EFA91188.1| DNA-binding protein HU [Prevotella buccalis ATCC 35310]
Length = 90
Score = 67.5 bits (164), Expect = 6e-10, Method: Composition-based stats.
Identities = 31/91 (34%), Positives = 52/91 (57%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI IA+ ++ +K ++ + + +AL G +V++ GFG+FSV +R+AR
Sbjct: 1 MNKTELIDKIAEA-AGISKVAAKKALDATTDSIKEALKEGDKVQLIGFGTFSVSERSARE 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
PL ++ I + K V F+AG L + LN
Sbjct: 60 GINPLTKEKIQIAAKKVAKFKAGAELADALN 90
>gi|224026370|ref|ZP_03644736.1| hypothetical protein BACCOPRO_03126 [Bacteroides coprophilus DSM
18228]
gi|224019606|gb|EEF77604.1| hypothetical protein BACCOPRO_03126 [Bacteroides coprophilus DSM
18228]
Length = 91
Score = 67.5 bits (164), Expect = 6e-10, Method: Composition-based stats.
Identities = 26/86 (30%), Positives = 43/86 (50%), Gaps = 1/86 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ ++ IA KN ++ V + ++ + +L+ V +RGFGSF V+KRA +
Sbjct: 1 MTKADIVNEIA-KNTGIDKATVLTTLEAFMDSVKDSLSKDENVYLRGFGSFIVKKRAQKT 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNL 86
AR I + E +P F+ K
Sbjct: 60 ARNISKNTTIIIPEHNIPAFKPAKTF 85
>gi|253583859|ref|ZP_04861057.1| predicted protein [Fusobacterium varium ATCC 27725]
gi|251834431|gb|EES62994.1| predicted protein [Fusobacterium varium ATCC 27725]
Length = 97
Score = 67.5 bits (164), Expect = 6e-10, Method: Composition-based stats.
Identities = 21/94 (22%), Positives = 46/94 (48%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M + I ++N +Y++ + V++ + + +AL G+V ++ +G F ++ +R
Sbjct: 1 MTEKEFIKFYKRRNLSRSYKEAKGKVDLFWDTLLKALNEDGKVSLKNWGVFEKKEVKSRK 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSPD 94
P + + + K FR G L++ +NS D
Sbjct: 61 VVLPKTNEAVIIGAKKKIKFRTGAGLQDAINSGD 94
>gi|260592453|ref|ZP_05857911.1| SPBc2 prophage-derived DNA-binding protein HU2 [Prevotella
veroralis F0319]
gi|260535499|gb|EEX18116.1| SPBc2 prophage-derived DNA-binding protein HU2 [Prevotella
veroralis F0319]
Length = 97
Score = 67.5 bits (164), Expect = 7e-10, Method: Composition-based stats.
Identities = 22/90 (24%), Positives = 43/90 (47%), Gaps = 1/90 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M I +A + + +K+V ++++M ++ G V + GFG+F V+KR R+
Sbjct: 1 MNNKEFIAELASRTGH-TQDESQKMVKAVIDQMAKSFETGDAVPVSGFGTFEVKKRLERV 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
P + V K+V F+ +K ++
Sbjct: 60 MVNPSTGLRMLVPPKLVLNFKPAATIKGQV 89
>gi|88607772|ref|YP_505798.1| integration host factor, alpha subunit [Anaplasma phagocytophilum
HZ]
gi|88598835|gb|ABD44305.1| integration host factor, alpha subunit [Anaplasma phagocytophilum
HZ]
Length = 106
Score = 67.1 bits (163), Expect = 7e-10, Method: Composition-based stats.
Identities = 25/93 (26%), Positives = 43/93 (46%), Gaps = 1/93 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ + I + L+ +D IV +L+EM+ +L G ++I FG F V ++ R+
Sbjct: 14 TKARIASMI-NREIGLSREDSLAIVGEILDEMSSSLVRCGSLKISSFGIFKVIRKKERVG 72
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLNSPD 94
R P + VEE F +K +N +
Sbjct: 73 RNPKTLEKFVVEEHNTVTFCPSVTVKRFINGDE 105
>gi|258543687|ref|YP_003189120.1| histone-like DNA-binding protein HU [Acetobacter pasteurianus IFO
3283-01]
gi|329113852|ref|ZP_08242623.1| DNA-binding protein HU-alpha [Acetobacter pomorum DM001]
gi|256634765|dbj|BAI00741.1| histone-like bacterial DNA-binding protein HU [Acetobacter
pasteurianus IFO 3283-01]
gi|256637821|dbj|BAI03790.1| histone-like bacterial DNA-binding protein HU [Acetobacter
pasteurianus IFO 3283-03]
gi|256640875|dbj|BAI06837.1| histone-like bacterial DNA-binding protein HU [Acetobacter
pasteurianus IFO 3283-07]
gi|256643930|dbj|BAI09885.1| histone-like bacterial DNA-binding protein HU [Acetobacter
pasteurianus IFO 3283-22]
gi|256646985|dbj|BAI12933.1| histone-like bacterial DNA-binding protein HU [Acetobacter
pasteurianus IFO 3283-26]
gi|256650038|dbj|BAI15979.1| histone-like bacterial DNA-binding protein HU [Acetobacter
pasteurianus IFO 3283-32]
gi|256653028|dbj|BAI18962.1| histone-like bacterial DNA-binding protein HU [Acetobacter
pasteurianus IFO 3283-01-42C]
gi|256656082|dbj|BAI22009.1| histone-like bacterial DNA-binding protein HU [Acetobacter
pasteurianus IFO 3283-12]
gi|326696862|gb|EGE48532.1| DNA-binding protein HU-alpha [Acetobacter pomorum DM001]
Length = 89
Score = 67.1 bits (163), Expect = 7e-10, Method: Composition-based stats.
Identities = 23/90 (25%), Positives = 41/90 (45%), Gaps = 1/90 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ I + + + + N L++ + + L G + FG+F+VRK AR
Sbjct: 1 MSKA-FIAAVIQDSINCTGVAANQAANDLIDAIVEELKREGGFTLPSFGTFTVRKTKARK 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
A P + + V+ F+A NLK+ +
Sbjct: 60 ALNPRTGEQVKVKAGKTVRFKASPNLKKAV 89
>gi|168187176|ref|ZP_02621811.1| DNA-binding protein HU 1 [Clostridium botulinum C str. Eklund]
gi|169294964|gb|EDS77097.1| DNA-binding protein HU 1 [Clostridium botulinum C str. Eklund]
Length = 95
Score = 67.1 bits (163), Expect = 7e-10, Method: Composition-based stats.
Identities = 28/96 (29%), Positives = 54/96 (56%), Gaps = 4/96 (4%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ L+ ++A+K L +D E + +E + +AL G +V++ GFG+F R++ R
Sbjct: 1 MNKTELLNSMAEK-AVLTKKDAELALKAFIESVKEALKEGKKVQLIGFGTFETREQKGRT 59
Query: 61 ARA---PLAQKVISVEEKMVPFFRAGKNLKERLNSP 93
+ + ++K+VP F+AG+ LKE +++
Sbjct: 60 GTINFGSKKGETYTSKDKIVPVFKAGRQLKEIVDNK 95
>gi|297159968|gb|ADI09680.1| DNA-binding protein HU 1 [Streptomyces bingchenggensis BCW-1]
Length = 93
Score = 67.1 bits (163), Expect = 7e-10, Method: Composition-based stats.
Identities = 26/94 (27%), Positives = 44/94 (46%), Gaps = 2/94 (2%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGG-RVEIRGFGSFSVRKRAAR 59
M +S L+ ++++ ++ +D + ++ L E + +A G +V I GF +F RAAR
Sbjct: 1 MNRSELVAALSER-AEVTRKDADAVLAALAEVTGEIVAKGDEKVTIPGFLTFERTHRAAR 59
Query: 60 LARAPLAQKVISVEEKMVPFFRAGKNLKERLNSP 93
AR P + I + AG LKE
Sbjct: 60 TARNPQTGEPIEIPAGYSVKVSAGSKLKEAAKGK 93
>gi|260911737|ref|ZP_05918313.1| conserved hypothetical protein [Prevotella sp. oral taxon 472
str. F0295]
gi|260634162|gb|EEX52276.1| conserved hypothetical protein [Prevotella sp. oral taxon 472
str. F0295]
Length = 96
Score = 67.1 bits (163), Expect = 7e-10, Method: Composition-based stats.
Identities = 27/92 (29%), Positives = 45/92 (48%), Gaps = 1/92 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M I +A++ + +V +++EM G + I GFG+F V+KR R+
Sbjct: 1 MNNKEFITELAQQT-GYTQSVTQSLVRNIIDEMAVRFDEGDTISIPGFGTFEVKKRLERV 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
P Q+ + V K+V FR ++KERL +
Sbjct: 60 VVNPSTQQRMLVPPKLVLNFRPTASIKERLKN 91
>gi|226354832|ref|YP_002784572.1| DNA-binding protein HU [Deinococcus deserti VCD115]
gi|226316822|gb|ACO44818.1| putative DNA-binding protein HU (Histone-like protein) [Deinococcus
deserti VCD115]
Length = 115
Score = 67.1 bits (163), Expect = 7e-10, Method: Composition-based stats.
Identities = 25/85 (29%), Positives = 38/85 (44%), Gaps = 1/85 (1%)
Query: 3 KSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLAR 62
K+ LI +A + LN + V +LE + AL G V + G G+ SV + AAR
Sbjct: 29 KTQLIEMVADRTS-LNKKQAGDAVATMLECVVGALREGRNVGLPGLGTLSVAQTAARTGV 87
Query: 63 APLAQKVISVEEKMVPFFRAGKNLK 87
P + I++ F+ LK
Sbjct: 88 RPGTSEKITIPAGKKIRFKVASTLK 112
>gi|315500767|ref|YP_004089568.1| histone family protein DNA-binding protein [Asticcacaulis
excentricus CB 48]
gi|315418779|gb|ADU15417.1| histone family protein DNA-binding protein [Asticcacaulis
excentricus CB 48]
Length = 90
Score = 67.1 bits (163), Expect = 7e-10, Method: Composition-based stats.
Identities = 21/68 (30%), Positives = 33/68 (48%)
Query: 25 IVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLARAPLAQKVISVEEKMVPFFRAGK 84
IV+ + +T+A G V + FG F V+ + AR R I + F+ GK
Sbjct: 23 IVDSVFASITEAAVLGQEVNLPAFGKFQVQAKPAREGRNLSTGATIQIAASRKLVFKPGK 82
Query: 85 NLKERLNS 92
+K+RLN+
Sbjct: 83 PVKDRLNA 90
>gi|54020025|ref|YP_115591.1| nucleoid DNA-binding protein [Mycoplasma hyopneumoniae 232]
gi|71893426|ref|YP_278872.1| nucleoid DNA-binding protein [Mycoplasma hyopneumoniae J]
gi|72080413|ref|YP_287471.1| nucleoid DNA-binding protein [Mycoplasma hyopneumoniae 7448]
gi|53987198|gb|AAV27399.1| conserved hypothetical protein [Mycoplasma hyopneumoniae 232]
gi|71851553|gb|AAZ44161.1| bacterial nucleoid DNA-binding protein [Mycoplasma hyopneumoniae
J]
gi|71913537|gb|AAZ53448.1| bacterial nucleoid DNA-binding protein [Mycoplasma hyopneumoniae
7448]
Length = 96
Score = 67.1 bits (163), Expect = 7e-10, Method: Composition-based stats.
Identities = 25/90 (27%), Positives = 41/90 (45%), Gaps = 1/90 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K LI IA K L +++E ++N + G++ I FG+F + A
Sbjct: 7 MNKKELIEQIAIKT-NLPIKNIELVLNEFFGITADVVKKQGKLVINSFGTFQGVFKPASS 65
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
+ PL + I+V K F+ K LK+ +
Sbjct: 66 SFNPLTKTQITVNAKTTVRFKPSKVLKDFI 95
>gi|256820307|ref|YP_003141586.1| histone family protein DNA-binding protein [Capnocytophaga
ochracea DSM 7271]
gi|315223334|ref|ZP_07865193.1| integration host factor subunit alpha [Capnocytophaga ochracea
F0287]
gi|256581890|gb|ACU93025.1| histone family protein DNA-binding protein [Capnocytophaga
ochracea DSM 7271]
gi|314946665|gb|EFS98654.1| integration host factor subunit alpha [Capnocytophaga ochracea
F0287]
Length = 104
Score = 67.1 bits (163), Expect = 7e-10, Method: Composition-based stats.
Identities = 25/93 (26%), Positives = 44/93 (47%), Gaps = 1/93 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ ++ I+ K L+ DV+ V + E+ L +G V +RGFGSF ++ RA +
Sbjct: 1 MTKAEIVSKISDKL-GLDKNDVQLTVENFMNEVINTLESGQNVYLRGFGSFIIKTRAEKT 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSP 93
R + + +P F+ K E + +
Sbjct: 60 GRNISKNTTLKIPAHNIPAFKPAKVFVEGVKAK 92
>gi|319789020|ref|YP_004150653.1| histone family protein DNA-binding protein [Thermovibrio
ammonificans HB-1]
gi|317113522|gb|ADU96012.1| histone family protein DNA-binding protein [Thermovibrio
ammonificans HB-1]
Length = 97
Score = 67.1 bits (163), Expect = 8e-10, Method: Composition-based stats.
Identities = 24/92 (26%), Positives = 48/92 (52%), Gaps = 5/92 (5%)
Query: 1 MIKSSLIGTIAKK-----NPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRK 55
M K L+ + ++ ++ + +E V LL+ + + G V+IRGFG F +++
Sbjct: 1 MTKYELVNELRQRVSRKLGKQVRKELIETTVEELLDLIVFKVFGGEEVKIRGFGKFYLKE 60
Query: 56 RAARLARAPLAQKVISVEEKMVPFFRAGKNLK 87
+ R AR P +V++V + V F+ K+++
Sbjct: 61 ASPRRARNPKTGEVVNVPPRKVFAFKPSKDIR 92
>gi|254883542|ref|ZP_05256252.1| DNA-binding protein HU [Bacteroides sp. 4_3_47FAA]
gi|254836335|gb|EET16644.1| DNA-binding protein HU [Bacteroides sp. 4_3_47FAA]
Length = 93
Score = 67.1 bits (163), Expect = 8e-10, Method: Composition-based stats.
Identities = 22/94 (23%), Positives = 44/94 (46%), Gaps = 1/94 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ ++ I+ + + V +V +E + +++ G V +RGFGSF +++RA ++
Sbjct: 1 MTKAEIVAQIS-RQSGIEKTVVMTVVESFMENVKESMVAGNEVFLRGFGSFIIKRRAEKM 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSPD 94
AR I + +P F+ K +
Sbjct: 60 ARNISKNTTIKIPAHNIPAFKPAKAFLNAVKENK 93
>gi|228982427|ref|ZP_04142686.1| DNA-binding protein HU [Bacillus thuringiensis Bt407]
gi|228776610|gb|EEM24918.1| DNA-binding protein HU [Bacillus thuringiensis Bt407]
Length = 94
Score = 67.1 bits (163), Expect = 8e-10, Method: Composition-based stats.
Identities = 26/90 (28%), Positives = 51/90 (56%), Gaps = 1/90 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ L+ + ++N L+ + + V+ + + +AL NG +V ++GFG F ++R +R
Sbjct: 1 MNKNELLEKMKERNR-LSKSENQLAVDTFINIIYEALQNGEKVSLKGFGQFVTKERKSRN 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P ++K + V K +P F G+ K ++
Sbjct: 60 IRIPSSEKEVRVPAKEIPAFEPGEEFKNKV 89
>gi|53712845|ref|YP_098837.1| DNA-binding protein HU [Bacteroides fragilis YCH46]
gi|60681069|ref|YP_211213.1| putative histone-like DNA-binding protein HU1 [Bacteroides
fragilis NCTC 9343]
gi|253563170|ref|ZP_04840627.1| DNA-binding protein HU [Bacteroides sp. 3_2_5]
gi|255008357|ref|ZP_05280483.1| putative histone-like DNA-binding protein HU1 [Bacteroides
fragilis 3_1_12]
gi|265762946|ref|ZP_06091514.1| integration host factor, beta subunit [Bacteroides sp. 2_1_16]
gi|313146081|ref|ZP_07808274.1| DNA-binding protein HU [Bacteroides fragilis 3_1_12]
gi|52215710|dbj|BAD48303.1| DNA-binding protein HU [Bacteroides fragilis YCH46]
gi|60492503|emb|CAH07273.1| putative histone-like DNA-binding protein HU1 [Bacteroides
fragilis NCTC 9343]
gi|251946946|gb|EES87228.1| DNA-binding protein HU [Bacteroides sp. 3_2_5]
gi|263255554|gb|EEZ26900.1| integration host factor, beta subunit [Bacteroides sp. 2_1_16]
gi|301162554|emb|CBW22101.1| putative histone-like DNA-binding protein HU1 [Bacteroides
fragilis 638R]
gi|313134848|gb|EFR52208.1| DNA-binding protein HU [Bacteroides fragilis 3_1_12]
Length = 91
Score = 67.1 bits (163), Expect = 8e-10, Method: Composition-based stats.
Identities = 27/86 (31%), Positives = 43/86 (50%), Gaps = 1/86 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ ++ IA KN ++ V V ++ + +L+ V +RGFGSF V+KRA +
Sbjct: 1 MTKADIVNEIA-KNTGVDKVTVLTTVEAFMDAVKDSLSKDENVYLRGFGSFVVKKRAQKT 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNL 86
AR I + E +P F+ K
Sbjct: 60 ARNISKNTTIIIPEHNIPAFKPAKTF 85
>gi|262384108|ref|ZP_06077244.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
gi|301311014|ref|ZP_07216943.1| DNA-binding protein HU [Bacteroides sp. 20_3]
gi|262295006|gb|EEY82938.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
gi|300831077|gb|EFK61718.1| DNA-binding protein HU [Bacteroides sp. 20_3]
Length = 91
Score = 67.1 bits (163), Expect = 8e-10, Method: Composition-based stats.
Identities = 24/92 (26%), Positives = 49/92 (53%), Gaps = 1/92 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI ++K+ + +++ I+ L + + G +V I+GFG ++ R + +RL
Sbjct: 1 MNKSQLIEELSKRVGN-DKEEIRYILEELNNIILEKTRAGEKVCIQGFGVYTPRLQTSRL 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
AR P + + + + + + F+ NL + +N
Sbjct: 60 ARNPKSGETLMLIPRTIVHFKCAPNLVKEINK 91
>gi|254498715|ref|ZP_05111431.1| integration host factor (IHF) alpha subunit [Legionella
drancourtii LLAP12]
gi|254352043|gb|EET10862.1| integration host factor (IHF) alpha subunit [Legionella
drancourtii LLAP12]
Length = 97
Score = 67.1 bits (163), Expect = 8e-10, Method: Composition-based stats.
Identities = 26/93 (27%), Positives = 48/93 (51%), Gaps = 4/93 (4%)
Query: 1 MI---KSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRA 57
M K+ + T+ + KL+ +++V E + AL +G V++ GFG+F++R +
Sbjct: 1 MNALSKAIMAETLCDEL-KLSKPASKEMVENFFEVLRHALEHGHHVKLSGFGNFTLRDKP 59
Query: 58 ARLARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R R P + I V + V F++G LK ++
Sbjct: 60 QRPGRNPKTGEEIPVVARRVVTFKSGLKLKTKI 92
>gi|153806287|ref|ZP_01958955.1| hypothetical protein BACCAC_00543 [Bacteroides caccae ATCC 43185]
gi|149130964|gb|EDM22170.1| hypothetical protein BACCAC_00543 [Bacteroides caccae ATCC 43185]
Length = 435
Score = 67.1 bits (163), Expect = 8e-10, Method: Composition-based stats.
Identities = 21/90 (23%), Positives = 38/90 (42%), Gaps = 1/90 (1%)
Query: 4 SSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLARA 63
L +A K+ + +D E V + QAL N V+I+G G+F + +R +
Sbjct: 8 QDLTDLLAAKHS-MTKKDAEVFVKEFFLLIEQALENEKTVKIKGLGTFKLIDVDSRESVN 66
Query: 64 PLAQKVISVEEKMVPFFRAGKNLKERLNSP 93
+ ++ F NL++ +N P
Sbjct: 67 VNTGERFQIKGHTKVSFSPDANLRDTINKP 96
>gi|304382715|ref|ZP_07365207.1| integration host factor subunit alpha [Prevotella marshii DSM
16973]
gi|304336166|gb|EFM02410.1| integration host factor subunit alpha [Prevotella marshii DSM
16973]
Length = 96
Score = 67.1 bits (163), Expect = 8e-10, Method: Composition-based stats.
Identities = 23/92 (25%), Positives = 45/92 (48%), Gaps = 1/92 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M I +++++ +D +K+++ L++ + G V GFG+F V+KR R+
Sbjct: 1 MNNKDFITELSRRS-GYTPEDTQKLIHTLIDGLCDGFDAGEPVVWAGFGTFEVKKRLERV 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
P + + + K+V F+ + KERL
Sbjct: 60 ITNPSTGQKMLIPPKLVLNFKPVSSAKERLKK 91
>gi|46200905|ref|ZP_00056166.2| COG0776: Bacterial nucleoid DNA-binding protein [Magnetospirillum
magnetotacticum MS-1]
Length = 84
Score = 67.1 bits (163), Expect = 8e-10, Method: Composition-based stats.
Identities = 21/78 (26%), Positives = 31/78 (39%)
Query: 13 KNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLARAPLAQKVISV 72
+ + V +L + + + GR + GFGSFS +R AR R P K I +
Sbjct: 7 QAAGCTVAQADAAVEAVLATIVEGVKTEGRFSLIGFGSFSKSERPARQGRNPRTGKTIDI 66
Query: 73 EEKMVPFFRAGKNLKERL 90
F LK+ L
Sbjct: 67 AASTSIKFSTSAALKKSL 84
>gi|209528275|ref|ZP_03276738.1| histone family protein DNA-binding protein [Arthrospira maxima
CS-328]
gi|209491295|gb|EDZ91687.1| histone family protein DNA-binding protein [Arthrospira maxima
CS-328]
Length = 71
Score = 67.1 bits (163), Expect = 8e-10, Method: Composition-based stats.
Identities = 26/66 (39%), Positives = 38/66 (57%)
Query: 25 IVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLARAPLAQKVISVEEKMVPFFRAGK 84
+++ LE + A+A +V + GFGSF RKR AR R P + + + E VP F AGK
Sbjct: 3 VLSAALESVIDAVATQEKVTLVGFGSFEARKRKAREGRNPQTGEKMDIPETWVPAFSAGK 62
Query: 85 NLKERL 90
KE++
Sbjct: 63 LFKEKV 68
>gi|237710577|ref|ZP_04541058.1| DNA-binding protein HU [Bacteroides sp. 9_1_42FAA]
gi|237720884|ref|ZP_04551365.1| DNA-binding protein HU [Bacteroides sp. 2_2_4]
gi|229449719|gb|EEO55510.1| DNA-binding protein HU [Bacteroides sp. 2_2_4]
gi|229455299|gb|EEO61020.1| DNA-binding protein HU [Bacteroides sp. 9_1_42FAA]
Length = 92
Score = 67.1 bits (163), Expect = 8e-10, Method: Composition-based stats.
Identities = 27/92 (29%), Positives = 45/92 (48%), Gaps = 1/92 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K LI +A+ + +V ++ L+E A+ANG + IRGFG+ S + ++
Sbjct: 1 MRKEELIKQVAEST-GIAICEVRTVIEAALKETVDAVANGRTLYIRGFGTLSPKHYKRKV 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
AR + I + E P F+ K+ K R +
Sbjct: 60 ARNIHKNETIVIAEHYTPHFKPAKSFKNRTKN 91
>gi|57238839|ref|YP_179975.1| integration host factor alpha-subunit [Ehrlichia ruminantium str.
Welgevonden]
gi|58578769|ref|YP_196981.1| integration host factor alpha-subunit [Ehrlichia ruminantium str.
Welgevonden]
gi|58616828|ref|YP_196027.1| integration host factor alpha-subunit [Ehrlichia ruminantium str.
Gardel]
gi|57160918|emb|CAH57823.1| putative integration host factor alpha-subunit [Ehrlichia
ruminantium str. Welgevonden]
gi|58416440|emb|CAI27553.1| Integration host factor alpha-subunit [Ehrlichia ruminantium str.
Gardel]
gi|58417395|emb|CAI26599.1| Integration host factor alpha-subunit [Ehrlichia ruminantium str.
Welgevonden]
Length = 99
Score = 66.7 bits (162), Expect = 9e-10, Method: Composition-based stats.
Identities = 26/95 (27%), Positives = 43/95 (45%), Gaps = 1/95 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
KS + I ++ L+ +D IV +L+EM ALA ++I FG+F K+ AR+
Sbjct: 6 TKSKIAEVI-NRDIGLSREDAASIVGEILDEMINALAKDRILKISSFGTFKSYKKKARIG 64
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDST 96
R P + ++E F +K +N
Sbjct: 65 RNPKTAEEFIIKEHNTVSFYPSILVKHSINDDSGE 99
>gi|254166674|ref|ZP_04873528.1| DNA-binding protein HU [Aciduliprofundum boonei T469]
gi|254168488|ref|ZP_04875332.1| DNA-binding protein HU [Aciduliprofundum boonei T469]
gi|289596099|ref|YP_003482795.1| histone family protein DNA-binding protein [Aciduliprofundum
boonei T469]
gi|197622543|gb|EDY35114.1| DNA-binding protein HU [Aciduliprofundum boonei T469]
gi|197624284|gb|EDY36845.1| DNA-binding protein HU [Aciduliprofundum boonei T469]
gi|289533886|gb|ADD08233.1| histone family protein DNA-binding protein [Aciduliprofundum
boonei T469]
Length = 89
Score = 66.7 bits (162), Expect = 9e-10, Method: Composition-based stats.
Identities = 28/84 (33%), Positives = 45/84 (53%), Gaps = 1/84 (1%)
Query: 4 SSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLARA 63
S L T+AKK ++ + ++ ++E+ + G +V + GFG F R + AR AR
Sbjct: 5 SELAKTVAKKT-GVSQKQARMVIRAFVDEVIDQVNKGNKVNLVGFGIFERRVQKARKARN 63
Query: 64 PLAQKVISVEEKMVPFFRAGKNLK 87
P ++VI+V EK FRA +K
Sbjct: 64 PRTKEVINVPEKKKFVFRASSKIK 87
>gi|317484392|ref|ZP_07943308.1| bacterial DNA-binding protein [Bilophila wadsworthia 3_1_6]
gi|316924344|gb|EFV45514.1| bacterial DNA-binding protein [Bilophila wadsworthia 3_1_6]
Length = 97
Score = 66.7 bits (162), Expect = 9e-10, Method: Composition-based stats.
Identities = 22/92 (23%), Positives = 44/92 (47%), Gaps = 1/92 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ + +I ++ ++ Q +K+++ +L M +AL + + GFG F + R
Sbjct: 6 TKADIAKSICAQS-EMKQQHAKKVLDAMLGIMKKALKEEKEMLLSGFGKFEAFTKKNRKG 64
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLNSP 93
R P + I+++ V FR + K +NS
Sbjct: 65 RNPQTGEEITLDSHDVLAFRISRKFKAAMNSE 96
>gi|294674943|ref|YP_003575559.1| HU family DNA-binding protein [Prevotella ruminicola 23]
gi|294472674|gb|ADE82063.1| DNA-binding protein, HU family [Prevotella ruminicola 23]
Length = 90
Score = 66.7 bits (162), Expect = 9e-10, Method: Composition-based stats.
Identities = 23/72 (31%), Positives = 41/72 (56%), Gaps = 1/72 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ L+ IA + ++ D +K ++ + + AL G +V + GFG+FSV +R AR
Sbjct: 1 MNKTELVEKIAA-SAGISKVDAKKALDATVVAIKDALVKGDKVALVGFGTFSVNERPARE 59
Query: 61 ARAPLAQKVISV 72
PL ++ I++
Sbjct: 60 GINPLTKQKITI 71
>gi|229073027|ref|ZP_04206221.1| DNA-binding protein HU 1 [Bacillus cereus F65185]
gi|228710145|gb|EEL62125.1| DNA-binding protein HU 1 [Bacillus cereus F65185]
Length = 93
Score = 66.7 bits (162), Expect = 9e-10, Method: Composition-based stats.
Identities = 31/91 (34%), Positives = 51/91 (56%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
+ K+ L +A+K +L +D +L+ +T ALANG +V+I GFG+F VR+++AR
Sbjct: 4 INKTELTKVVAEKT-ELIQKDPVAATQTVLDTITNALANGEKVQILGFGTFEVREQSART 62
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
P + + + F+AGK LKE +
Sbjct: 63 GHNPQTGEEMQIAASKASAFKAGKELKEAVK 93
>gi|312889814|ref|ZP_07749360.1| histone family protein DNA-binding protein [Mucilaginibacter
paludis DSM 18603]
gi|311297740|gb|EFQ74863.1| histone family protein DNA-binding protein [Mucilaginibacter
paludis DSM 18603]
Length = 99
Score = 66.7 bits (162), Expect = 1e-09, Method: Composition-based stats.
Identities = 29/90 (32%), Positives = 46/90 (51%), Gaps = 1/90 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ +I I+ K + DV++ V + + ++ G V +RGFGSF V+KRA +
Sbjct: 1 MTKAEIIAEISTKT-GIEKIDVQETVEAFFKVVKTSMVGGENVYVRGFGSFVVKKRAKKT 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
AR I + E VP F+ K E++
Sbjct: 60 ARNISKNTAIIIPEHFVPSFKPAKTFVEKV 89
>gi|85715380|ref|ZP_01046362.1| histone-like DNA-binding protein [Nitrobacter sp. Nb-311A]
gi|85697801|gb|EAQ35676.1| histone-like DNA-binding protein [Nitrobacter sp. Nb-311A]
Length = 116
Score = 66.7 bits (162), Expect = 1e-09, Method: Composition-based stats.
Identities = 23/96 (23%), Positives = 39/96 (40%), Gaps = 7/96 (7%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKR---A 57
M KS L+ I+ + L+ DV+ ++ L + L G + GF F V K+
Sbjct: 22 MTKSQLVEKISAQ-AGLSKTDVKGVLEALATTGYKELKKTGVFLLPGFAKFVVIKKPATK 80
Query: 58 ARLARAPLAQKVIS---VEEKMVPFFRAGKNLKERL 90
AR P + ++ + V R K K+ +
Sbjct: 81 ARKGTNPFTGEPMTFKAKPARKVVRARPVKAAKDAV 116
>gi|311745198|ref|ZP_07718983.1| DNA-binding protein HU [Algoriphagus sp. PR1]
gi|126577721|gb|EAZ81941.1| DNA-binding protein HU [Algoriphagus sp. PR1]
Length = 102
Score = 66.7 bits (162), Expect = 1e-09, Method: Composition-based stats.
Identities = 26/95 (27%), Positives = 48/95 (50%), Gaps = 1/95 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ +I I+ K + DV + V + + +++ G + +RGFGSF +KRA ++
Sbjct: 1 MTKAEVITKISDKT-GIQKDDVTQTVEAFFKVVKDSMSEGENIYVRGFGSFINKKRAKKI 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDS 95
AR I ++E +P F+ K E++ +
Sbjct: 60 ARNISKNTAIVIDEHYIPAFKPSKVFVEKIKNSKK 94
>gi|281425615|ref|ZP_06256528.1| DNA-binding protein HU [Prevotella oris F0302]
gi|299140821|ref|ZP_07033959.1| DNA-binding protein HU [Prevotella oris C735]
gi|281400202|gb|EFB31033.1| DNA-binding protein HU [Prevotella oris F0302]
gi|298577787|gb|EFI49655.1| DNA-binding protein HU [Prevotella oris C735]
Length = 93
Score = 66.7 bits (162), Expect = 1e-09, Method: Composition-based stats.
Identities = 28/94 (29%), Positives = 49/94 (52%), Gaps = 2/94 (2%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQAL-ANGGRVEIRGFGSFSVRKRAAR 59
M K+ +I IA + +DV +V +E + +L V +RGFGSF ++ RAA+
Sbjct: 1 MTKADIINEIAMAT-GVQKRDVTVVVESFMETIKNSLLEKKENVYLRGFGSFVIKHRAAK 59
Query: 60 LARAPLAQKVISVEEKMVPFFRAGKNLKERLNSP 93
AR L +++E +P F+ K+ E++ +
Sbjct: 60 TARNILKNTTMTIEAHDLPSFKPSKSFIEQMKNE 93
>gi|269123561|ref|YP_003306138.1| histone family protein DNA-binding protein [Streptobacillus
moniliformis DSM 12112]
gi|268314887|gb|ACZ01261.1| histone family protein DNA-binding protein [Streptobacillus
moniliformis DSM 12112]
Length = 93
Score = 66.7 bits (162), Expect = 1e-09, Method: Composition-based stats.
Identities = 28/90 (31%), Positives = 42/90 (46%), Gaps = 1/90 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K + A K + E++VN LE + + G V+ G+GSF V++R R
Sbjct: 1 MSKKGFVEEYA-KLTGETKKRSEELVNAFLETVENLVVKGEDVQFVGWGSFKVQERKERE 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
P QK I + K V F+ GK E++
Sbjct: 60 GINPKTQKEIKIPAKKVLKFKVGKKFAEKV 89
>gi|257125666|ref|YP_003163780.1| histone family protein DNA-binding protein [Leptotrichia buccalis
C-1013-b]
gi|257049605|gb|ACV38789.1| histone family protein DNA-binding protein [Leptotrichia buccalis
C-1013-b]
Length = 93
Score = 66.7 bits (162), Expect = 1e-09, Method: Composition-based stats.
Identities = 23/74 (31%), Positives = 36/74 (48%), Gaps = 1/74 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K + AK + + E++VN LE + L G ++ G+G+F V++RAAR
Sbjct: 1 MSKKEFVDAYAKATGE-TKKRAEELVNAFLETAEEFLVKGENIQFVGWGTFEVKERAARE 59
Query: 61 ARAPLAQKVISVEE 74
R P I +E
Sbjct: 60 GRNPSTGDPIQIEA 73
>gi|300727913|ref|ZP_07061291.1| DNA-binding protein HU [Prevotella bryantii B14]
gi|299774755|gb|EFI71369.1| DNA-binding protein HU [Prevotella bryantii B14]
Length = 94
Score = 66.7 bits (162), Expect = 1e-09, Method: Composition-based stats.
Identities = 22/93 (23%), Positives = 47/93 (50%), Gaps = 2/93 (2%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQA-LANGGRVEIRGFGSFSVRKRAAR 59
M K+ +I ++++ ++ ++V +V ++ + + L V +RGFGSF ++ RA +
Sbjct: 1 MTKADIIAEVSEQT-GMSKKEVSAVVESFMDCVKLSLLERKENVYLRGFGSFVIKHRAEK 59
Query: 60 LARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
AR I++ +P F+ KN + +
Sbjct: 60 TARNISKNTTITIAAHDLPSFKPAKNFIDDMKK 92
>gi|253570965|ref|ZP_04848373.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
gi|319644004|ref|ZP_07998563.1| hypothetical protein HMPREF9011_04166 [Bacteroides sp. 3_1_40A]
gi|251839914|gb|EES67997.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
gi|313157143|gb|EFR56573.1| putative DNA-binding protein HU-alpha [Alistipes sp. HGB5]
gi|317384352|gb|EFV65320.1| hypothetical protein HMPREF9011_04166 [Bacteroides sp. 3_1_40A]
Length = 93
Score = 66.7 bits (162), Expect = 1e-09, Method: Composition-based stats.
Identities = 21/94 (22%), Positives = 43/94 (45%), Gaps = 1/94 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ ++ I+ + + V ++ +E + +++ G V +RGFGSF +++RA +
Sbjct: 1 MTKAEIVAQIS-RQSGIEKTVVMTVIESFMENVKESMVAGNEVFLRGFGSFIIKRRAEKT 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSPD 94
AR I + +P F+ K +
Sbjct: 60 ARNISKNTTIKIPAHNIPAFKPAKAFLNAVKENK 93
>gi|288802185|ref|ZP_06407625.1| HimA protein [Prevotella melaninogenica D18]
gi|302346576|ref|YP_003814874.1| putative DNA-binding protein HU [Prevotella melaninogenica ATCC
25845]
gi|288335152|gb|EFC73587.1| HimA protein [Prevotella melaninogenica D18]
gi|302151040|gb|ADK97301.1| putative DNA-binding protein HU [Prevotella melaninogenica ATCC
25845]
Length = 97
Score = 66.7 bits (162), Expect = 1e-09, Method: Composition-based stats.
Identities = 22/90 (24%), Positives = 41/90 (45%), Gaps = 1/90 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M I +A + + +K+V +++ M ++ G V + GFG+F V+KR R+
Sbjct: 1 MNNKEFIAALAART-GYTQDESQKMVKTVVDMMGKSFETGDPVPVIGFGTFEVKKRLERV 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
P + V K+V F+ +K +
Sbjct: 60 MVNPSTGLRMLVPPKLVLNFKPAATIKGHV 89
>gi|288927531|ref|ZP_06421378.1| integration host factor subunit alpha (IHF-alpha) [Prevotella sp.
oral taxon 317 str. F0108]
gi|288330365|gb|EFC68949.1| integration host factor subunit alpha (IHF-alpha) [Prevotella sp.
oral taxon 317 str. F0108]
Length = 96
Score = 66.7 bits (162), Expect = 1e-09, Method: Composition-based stats.
Identities = 28/92 (30%), Positives = 45/92 (48%), Gaps = 1/92 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M I +A++ + +V +++EM G V I GFG+F V+KR R+
Sbjct: 1 MNNKEFITELAQQT-GYTQNVTQTLVRNVIDEMAVRFDEGDVVSIPGFGTFEVKKRLERV 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
P Q+ + V K+V FR ++KERL +
Sbjct: 60 VVNPATQQRMLVPPKLVLNFRPTASIKERLKN 91
>gi|167753149|ref|ZP_02425276.1| hypothetical protein ALIPUT_01420 [Alistipes putredinis DSM
17216]
gi|167659463|gb|EDS03593.1| hypothetical protein ALIPUT_01420 [Alistipes putredinis DSM
17216]
Length = 90
Score = 66.7 bits (162), Expect = 1e-09, Method: Composition-based stats.
Identities = 28/91 (30%), Positives = 47/91 (51%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ ++ IA K+ V+ IV +E + +LA V +RGFGSF V+KRA ++
Sbjct: 1 MTKADIVSEIA-KSTGAEKVQVQAIVEAFMESIKGSLAQNNNVYLRGFGSFIVKKRAKKV 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
AR I++ +P F+ K+ ++
Sbjct: 60 ARNISKNTTITIPAHNIPAFKPAKSFAAKVK 90
>gi|332879557|ref|ZP_08447252.1| DNA-binding protein HU [Capnocytophaga sp. oral taxon 329 str.
F0087]
gi|332682523|gb|EGJ55425.1| DNA-binding protein HU [Capnocytophaga sp. oral taxon 329 str.
F0087]
Length = 90
Score = 66.7 bits (162), Expect = 1e-09, Method: Composition-based stats.
Identities = 24/90 (26%), Positives = 44/90 (48%), Gaps = 1/90 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M I ++++ +D ++ L+ EMT L + + I+ GSF VRK+ R+
Sbjct: 1 MNNKEFIAELSRRL-GYTVKDASSLMVALVAEMTDELEDENVIAIQNIGSFEVRKKQERV 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
P Q+ + V K+V F+ + KE++
Sbjct: 60 VVNPATQQRMLVPPKLVINFKPSASFKEKM 89
>gi|50365485|ref|YP_053910.1| histone-like DNA-binding protein [Mesoplasma florum L1]
gi|50364041|gb|AAT76026.1| predicted histone-like DNA-binding protein [Mesoplasma florum L1]
Length = 441
Score = 66.3 bits (161), Expect = 1e-09, Method: Composition-based stats.
Identities = 21/86 (24%), Positives = 41/86 (47%)
Query: 3 KSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLAR 62
K L+ + + + + + + V+++V+ E M+ A+ N V I FG + + A+
Sbjct: 337 KKDLLIKLEETHSEFSKKSVKEVVDSAFEIMSNAIINNEEVLISNFGKLTKIHKEAKKGI 396
Query: 63 APLAQKVISVEEKMVPFFRAGKNLKE 88
P + I + F+A K+LKE
Sbjct: 397 NPSTGETIDIPASNTVKFKANKHLKE 422
>gi|89052827|ref|YP_508278.1| histone-like DNA-binding protein [Jannaschia sp. CCS1]
gi|88862376|gb|ABD53253.1| histone-like DNA-binding protein [Jannaschia sp. CCS1]
Length = 96
Score = 66.3 bits (161), Expect = 1e-09, Method: Composition-based stats.
Identities = 23/91 (25%), Positives = 41/91 (45%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ L+ +A + + + ++ + +T+ +ANGG V I G G R+R R+
Sbjct: 6 MTKTQLVAALADEMGA-DKKAAGAALDAVSAVITKEVANGGAVTIPGIGKVYCRERPERM 64
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + I + K LK+ +N
Sbjct: 65 VRNPATGEQIKKDADKQVKVTIAKALKDSVN 95
>gi|296535865|ref|ZP_06898024.1| probable DNA-binding protein HU-alpha [Roseomonas cervicalis ATCC
49957]
gi|296263815|gb|EFH10281.1| probable DNA-binding protein HU-alpha [Roseomonas cervicalis ATCC
49957]
Length = 89
Score = 66.3 bits (161), Expect = 1e-09, Method: Composition-based stats.
Identities = 18/90 (20%), Positives = 38/90 (42%), Gaps = 1/90 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ I + + + + L+ + + + G + FG+F+VRK AR
Sbjct: 1 MSKA-FIAQVLQDSLGCTGVAANRAAGELIAAIVKDMKKQGGFTLPSFGTFTVRKTKARK 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
P + + ++ F+A NL++ +
Sbjct: 60 GMNPRTGEPVKIKAGKTVRFKASPNLRKSV 89
>gi|284040813|ref|YP_003390743.1| histone family protein DNA-binding protein [Spirosoma linguale
DSM 74]
gi|283820106|gb|ADB41944.1| histone family protein DNA-binding protein [Spirosoma linguale
DSM 74]
Length = 100
Score = 66.3 bits (161), Expect = 1e-09, Method: Composition-based stats.
Identities = 26/95 (27%), Positives = 48/95 (50%), Gaps = 1/95 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ +I I+ K ++ +V + + +LA G + +RGFGSF +KRA ++
Sbjct: 1 MTKADVIAEISDKT-GIDKAEVTNTLETFFSVVKDSLAEGENIYVRGFGSFINKKRAKKV 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDS 95
AR + ++E +P F+ K E++ + D
Sbjct: 60 ARNISKNTAMVIDEHFIPSFKPAKVFVEQVKTSDK 94
>gi|148260981|ref|YP_001235108.1| histone family protein DNA-binding protein [Acidiphilium cryptum
JF-5]
gi|326404379|ref|YP_004284461.1| histone-like DNA-binding protein [Acidiphilium multivorum AIU301]
gi|146402662|gb|ABQ31189.1| histone family protein DNA-binding protein [Acidiphilium cryptum
JF-5]
gi|325051241|dbj|BAJ81579.1| histone-like DNA-binding protein [Acidiphilium multivorum AIU301]
Length = 89
Score = 66.3 bits (161), Expect = 1e-09, Method: Composition-based stats.
Identities = 22/90 (24%), Positives = 42/90 (46%), Gaps = 1/90 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ I + + + ++ + L+E + + L G+ + FG+F+VRK AR
Sbjct: 1 MSKA-FIAEVIQGSAEITGVAANRAATDLMEAIVKELKKNGKFTLPSFGTFTVRKTKARK 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
P + I V+ F+A +LK+ +
Sbjct: 60 GVNPRTGEEIKVKAGKTVRFKASPSLKKMV 89
>gi|325854317|ref|ZP_08171516.1| DNA-binding protein HU [Prevotella denticola CRIS 18C-A]
gi|325484111|gb|EGC87045.1| DNA-binding protein HU [Prevotella denticola CRIS 18C-A]
Length = 419
Score = 66.3 bits (161), Expect = 1e-09, Method: Composition-based stats.
Identities = 22/95 (23%), Positives = 40/95 (42%), Gaps = 2/95 (2%)
Query: 1 MIKS--SLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAA 58
M K+ +I + KL D V+ ++ L NG +V+++G G+F V+
Sbjct: 1 MAKTGMQMITNTLARLYKLPAADAMAFVDTFFAIISSELKNGRQVKVKGLGTFKVQSVKP 60
Query: 59 RLARAPLAQKVISVEEKMVPFFRAGKNLKERLNSP 93
R + + + +E F +KE +N P
Sbjct: 61 RESVNVNTGERVLIEGHDKVTFTPDTAMKELVNKP 95
>gi|327313607|ref|YP_004329044.1| DNA-binding protein HU [Prevotella denticola F0289]
gi|326944082|gb|AEA19967.1| DNA-binding protein HU [Prevotella denticola F0289]
Length = 419
Score = 66.3 bits (161), Expect = 1e-09, Method: Composition-based stats.
Identities = 22/95 (23%), Positives = 40/95 (42%), Gaps = 2/95 (2%)
Query: 1 MIKS--SLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAA 58
M K+ +I + KL D V+ ++ L NG +V+++G G+F V+
Sbjct: 1 MAKTGMQMITNTLARLYKLPAADAMAFVDTFFAIISSELKNGRQVKVKGLGTFKVQSVKP 60
Query: 59 RLARAPLAQKVISVEEKMVPFFRAGKNLKERLNSP 93
R + + + +E F +KE +N P
Sbjct: 61 RESVNVNTGERVLIEGHDKVTFTPDTAMKELVNKP 95
>gi|209543183|ref|YP_002275412.1| histone family protein DNA-binding protein [Gluconacetobacter
diazotrophicus PAl 5]
gi|209530860|gb|ACI50797.1| histone family protein DNA-binding protein [Gluconacetobacter
diazotrophicus PAl 5]
Length = 89
Score = 66.3 bits (161), Expect = 1e-09, Method: Composition-based stats.
Identities = 22/90 (24%), Positives = 38/90 (42%), Gaps = 1/90 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ I + + + K + L+ + L + G + FG+FSV K AR
Sbjct: 1 MSKA-FIAAVLQDSLACTGVAAAKAADDLVGAIVAELKHEGGFTLPSFGTFSVHKTKARK 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
A P + + V+ F+A LK+ +
Sbjct: 60 ALNPRTGEPVKVKAGKTVRFKASPVLKKTI 89
>gi|307566168|ref|ZP_07628623.1| DNA-binding protein HU [Prevotella amnii CRIS 21A-A]
gi|307345133|gb|EFN90515.1| DNA-binding protein HU [Prevotella amnii CRIS 21A-A]
Length = 91
Score = 66.3 bits (161), Expect = 1e-09, Method: Composition-based stats.
Identities = 25/67 (37%), Positives = 36/67 (53%), Gaps = 1/67 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI IA N L+ D +K +N E + AL G ++++ GFG+FSV +R R
Sbjct: 1 MNKSELIDQIAA-NSGLSKADAKKALNATTEVIKNALVEGEKIQLVGFGTFSVNERPERE 59
Query: 61 ARAPLAQ 67
P +
Sbjct: 60 GINPSTK 66
>gi|325300753|ref|YP_004260669.1| histone family protein DNA-binding protein [Bacteroides
salanitronis DSM 18170]
gi|324320306|gb|ADY38196.1| histone family protein DNA-binding protein [Bacteroides
salanitronis DSM 18170]
Length = 92
Score = 65.9 bits (160), Expect = 2e-09, Method: Composition-based stats.
Identities = 27/85 (31%), Positives = 45/85 (52%), Gaps = 2/85 (2%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
+ K+ LI +A+K ++V +I+++ +E++Q L + V I+ FG+F R +
Sbjct: 3 INKTDLIKIVAEK-ANQPTKEVAEIIDLFFKELSQNLRDKD-VSIKDFGTFKKRIVPPKK 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKN 85
AR P + I V EK FR KN
Sbjct: 61 ARNPATGETIYVPEKEAVKFRPSKN 85
>gi|288802260|ref|ZP_06407700.1| DNA-binding protein HU [Prevotella melaninogenica D18]
gi|302346648|ref|YP_003814946.1| DNA-binding protein HU [Prevotella melaninogenica ATCC 25845]
gi|288335227|gb|EFC73662.1| DNA-binding protein HU [Prevotella melaninogenica D18]
gi|302151019|gb|ADK97280.1| DNA-binding protein HU [Prevotella melaninogenica ATCC 25845]
Length = 92
Score = 65.9 bits (160), Expect = 2e-09, Method: Composition-based stats.
Identities = 27/93 (29%), Positives = 42/93 (45%), Gaps = 2/93 (2%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQAL-ANGGRVEIRGFGSFSVRKRAAR 59
M K+ +I IA + +DV +V +E + +L V +RGFGSF V+ RA +
Sbjct: 1 MTKADIINEIATST-GIAKKDVSAVVESFMETIKDSLLEKKENVYLRGFGSFIVKHRAEK 59
Query: 60 LARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
AR I++ P F+ K E +
Sbjct: 60 TARNISKNTTITIPAHDFPSFKPAKTFIEDMKK 92
>gi|261415246|ref|YP_003248929.1| histone family protein DNA-binding protein [Fibrobacter
succinogenes subsp. succinogenes S85]
gi|261371702|gb|ACX74447.1| histone family protein DNA-binding protein [Fibrobacter
succinogenes subsp. succinogenes S85]
gi|302327669|gb|ADL26870.1| DNA-binding protein HU [Fibrobacter succinogenes subsp.
succinogenes S85]
Length = 100
Score = 65.9 bits (160), Expect = 2e-09, Method: Composition-based stats.
Identities = 27/90 (30%), Positives = 45/90 (50%), Gaps = 2/90 (2%)
Query: 1 MIKSSLIGT-IAKKNPKL-NYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAA 58
M K LI +A K + + + ++ +L+ + + G V++ GFG+F+V+ RAA
Sbjct: 1 MNKQDLIEAVLANKEAGIESKAAAARAIDAVLDGIAAGIKKDGNVQLIGFGTFTVKSRAA 60
Query: 59 RLARAPLAQKVISVEEKMVPFFRAGKNLKE 88
R R P I ++ F+AG LKE
Sbjct: 61 RTGRNPQTGATIKIKASKTVGFKAGAALKE 90
>gi|294673427|ref|YP_003574043.1| HU family DNA-binding protein [Prevotella ruminicola 23]
gi|294471958|gb|ADE81347.1| DNA-binding protein, HU family [Prevotella ruminicola 23]
Length = 91
Score = 65.9 bits (160), Expect = 2e-09, Method: Composition-based stats.
Identities = 27/92 (29%), Positives = 48/92 (52%), Gaps = 2/92 (2%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQAL-ANGGRVEIRGFGSFSVRKRAAR 59
M K+ +I IA++ L +DV V +E + ++L + V +RGFG+F V++RA +
Sbjct: 1 MTKAEIINRIAEET-GLAKKDVAISVEAFMECIRESLASEKENVYLRGFGTFVVKRRAQK 59
Query: 60 LARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
AR + +E P F+ K+ E++
Sbjct: 60 TARNISKNTTLVIEAHDFPAFKPSKSFIEKMK 91
>gi|308271765|emb|CBX28373.1| DNA-binding protein HU 1 [uncultured Desulfobacterium sp.]
Length = 107
Score = 65.9 bits (160), Expect = 2e-09, Method: Composition-based stats.
Identities = 23/72 (31%), Positives = 39/72 (54%), Gaps = 2/72 (2%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ L+ +A ++ + +V+ + MT AL NG V++ GFG+F V++R AR
Sbjct: 18 MNKTDLVNEVAAIVSNT--KEAKAVVDCIFTSMTAALKNGDEVKLAGFGTFKVKERKART 75
Query: 61 ARAPLAQKVISV 72
R P + I +
Sbjct: 76 GRNPKTGEEIKI 87
>gi|295101480|emb|CBK99025.1| Bacterial nucleoid DNA-binding protein [Faecalibacterium
prausnitzii L2-6]
Length = 102
Score = 65.9 bits (160), Expect = 2e-09, Method: Composition-based stats.
Identities = 27/98 (27%), Positives = 46/98 (46%), Gaps = 1/98 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M +S +I T+A+K VE ++ L +++ L +V I GFG F +R R +
Sbjct: 1 MTRSQMIETVARKT-GFTEAQVETTMDALFDQIADCLRADEKVTIAGFGRFEMRPRKPKA 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDSTLS 98
P + +E +P F+A K++L S + S
Sbjct: 60 YTNPKTKVSSRLESTSIPGFKASGRFKQKLESGRAAKS 97
>gi|225848149|ref|YP_002728312.1| DNA-binding protein HU 1 (DNA-binding protein II) (HB)
[Sulfurihydrogenibium azorense Az-Fu1]
gi|225643798|gb|ACN98848.1| DNA-binding protein HU 1 (DNA-binding protein II) (HB)
[Sulfurihydrogenibium azorense Az-Fu1]
Length = 100
Score = 65.9 bits (160), Expect = 2e-09, Method: Composition-based stats.
Identities = 27/100 (27%), Positives = 55/100 (55%), Gaps = 7/100 (7%)
Query: 1 MIKSSLIGTIAKK---NPKLNYQDVEKIVNMLLEEMTQAL----ANGGRVEIRGFGSFSV 53
M ++ ++ I K N L+ +++ KIVN + +++ L G +V I GFG+F +
Sbjct: 1 MKRADIVNMIHKDKDLNLSLDKREIHKIVNDTFDMISEYLTTDIKEGKKVMISGFGTFII 60
Query: 54 RKRAARLARAPLAQKVISVEEKMVPFFRAGKNLKERLNSP 93
++R ++ R P + + +++ F+AGK LK+++N
Sbjct: 61 KRRKGKVGRNPKTGEEKLIPDRLGISFKAGKELKKKINQK 100
>gi|288800013|ref|ZP_06405472.1| DNA-binding protein HU [Prevotella sp. oral taxon 299 str. F0039]
gi|288333261|gb|EFC71740.1| DNA-binding protein HU [Prevotella sp. oral taxon 299 str. F0039]
Length = 97
Score = 65.9 bits (160), Expect = 2e-09, Method: Composition-based stats.
Identities = 23/92 (25%), Positives = 45/92 (48%), Gaps = 1/92 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M I ++++ + + + + +++ M+ A NG V + GFG+F V+KR R+
Sbjct: 1 MNNKEFITELSRQL-EYTQEHTQGCIRCVIDAMSMAFDNGESVSVSGFGTFEVKKRLERI 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
P + + V K+V F+ ++KE L
Sbjct: 60 MVNPSTGQRMIVPPKLVLNFKPSASIKEELKK 91
>gi|258648378|ref|ZP_05735847.1| DNA-binding protein HU [Prevotella tannerae ATCC 51259]
gi|260851548|gb|EEX71417.1| DNA-binding protein HU [Prevotella tannerae ATCC 51259]
Length = 94
Score = 65.9 bits (160), Expect = 2e-09, Method: Composition-based stats.
Identities = 25/90 (27%), Positives = 44/90 (48%), Gaps = 1/90 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ ++ IAKK ++ V V + + +L V +RGFGSF ++KRA +
Sbjct: 1 MTKADIVNEIAKKT-GIDRVTVLTTVEAFMNSVKDSLDREQNVYLRGFGSFILKKRAEKT 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
AR + + E +P F+ K+ + +
Sbjct: 60 ARNISKNTTLIIPEHNIPAFKPAKSFLQSI 89
>gi|307566102|ref|ZP_07628560.1| DNA-binding protein HU [Prevotella amnii CRIS 21A-A]
gi|307345290|gb|EFN90669.1| DNA-binding protein HU [Prevotella amnii CRIS 21A-A]
Length = 92
Score = 65.9 bits (160), Expect = 2e-09, Method: Composition-based stats.
Identities = 26/93 (27%), Positives = 43/93 (46%), Gaps = 2/93 (2%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQAL-ANGGRVEIRGFGSFSVRKRAAR 59
M K+ +I IA ++ +DV +V +E + +L V +RGFGSF V+ RA +
Sbjct: 1 MTKADIINEIAT-GTGISKKDVSAVVESFMEAIKDSLLEKKENVYLRGFGSFIVKHRAEK 59
Query: 60 LARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
AR +++ P F+ K E +
Sbjct: 60 TARNISKNTTLTIPAHDFPSFKPAKTFIEDMKK 92
>gi|302039319|ref|YP_003799641.1| transcriptional dual regulator HU-beta [Candidatus Nitrospira
defluvii]
gi|300607383|emb|CBK43716.1| Transcriptional dual regulator HU-beta [Candidatus Nitrospira
defluvii]
Length = 95
Score = 65.9 bits (160), Expect = 2e-09, Method: Composition-based stats.
Identities = 20/90 (22%), Positives = 35/90 (38%), Gaps = 3/90 (3%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS + +A K + + + ++ + N + G G + R AR+
Sbjct: 5 MTKSQIADHLAGK-AGITKKTAVQFLDDFAALAYREAKN--AFVVPGIGKLVLANRKARM 61
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P + I + K V FR K K+ +
Sbjct: 62 GRNPQTGEPIKIPAKRVVKFRVAKMAKDSI 91
>gi|313159797|gb|EFR59153.1| DNA-binding protein HU [Alistipes sp. HGB5]
Length = 90
Score = 65.9 bits (160), Expect = 2e-09, Method: Composition-based stats.
Identities = 28/91 (30%), Positives = 49/91 (53%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ ++ IA K+ + V+ IV ++ + +L N V +RGFGSF V+KRA ++
Sbjct: 1 MTKADIVSEIA-KSTGVEKVQVQAIVEAFMDSIKTSLTNKNNVYLRGFGSFIVKKRAKKV 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
AR I++ E +P F+ K+ ++
Sbjct: 60 ARNISKNTTITIPEHNIPAFKPAKSFAAKVK 90
>gi|288928445|ref|ZP_06422292.1| DNA-binding protein HU [Prevotella sp. oral taxon 317 str. F0108]
gi|288331279|gb|EFC69863.1| DNA-binding protein HU [Prevotella sp. oral taxon 317 str. F0108]
Length = 94
Score = 65.9 bits (160), Expect = 2e-09, Method: Composition-based stats.
Identities = 27/91 (29%), Positives = 46/91 (50%), Gaps = 2/91 (2%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQAL-ANGGRVEIRGFGSFSVRKRAAR 59
M K+ +I IA + + +DV +V +E + +L V +RGFGSF ++ RAA+
Sbjct: 1 MTKADIINEIAIQT-GIQKKDVSVVVESFMETIKGSLLDKKDNVYLRGFGSFIIKHRAAK 59
Query: 60 LARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
AR I++ +P F+ K+ E +
Sbjct: 60 TARNIAKNTTITIAAHDLPCFKPAKSFVESM 90
>gi|304382714|ref|ZP_07365206.1| conserved hypothetical protein [Prevotella marshii DSM 16973]
gi|304336165|gb|EFM02409.1| conserved hypothetical protein [Prevotella marshii DSM 16973]
Length = 338
Score = 65.9 bits (160), Expect = 2e-09, Method: Composition-based stats.
Identities = 19/93 (20%), Positives = 44/93 (47%), Gaps = 1/93 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M L + +K+ L +D E+ +++L+E + + L V+I+G G+F V + R
Sbjct: 2 MTIKDLAKALVEKH-DLREKDAEEFIDLLIEILYEGLRTDRLVKIKGLGTFKVMEVKERE 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSP 93
+ + + + ++ F +++ +N P
Sbjct: 61 SISVNTGERVVIDGHDRITFTPDATMRDLVNKP 93
>gi|313681742|ref|YP_004059480.1| histone family protein DNA-binding protein [Sulfuricurvum
kujiense DSM 16994]
gi|313154602|gb|ADR33280.1| histone family protein DNA-binding protein [Sulfuricurvum
kujiense DSM 16994]
Length = 94
Score = 65.9 bits (160), Expect = 2e-09, Method: Composition-based stats.
Identities = 26/90 (28%), Positives = 43/90 (47%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ + + K + E + E +T AL V + GFGSF+ + +
Sbjct: 1 MNKAQFVELVQKSGSYKTKVEAETAIKAFTEAVTAALVAKEEVSLVGFGSFTSTLQKGKS 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
+ P K S ++KMVP F+ GK+LK+ +
Sbjct: 61 GKVPGTSKTYSTKDKMVPKFKPGKSLKDSV 90
>gi|237712971|ref|ZP_04543452.1| DNA-binding protein HU [Bacteroides sp. D1]
gi|237717786|ref|ZP_04548267.1| DNA-binding protein HU [Bacteroides sp. 2_2_4]
gi|256842595|ref|ZP_05548096.1| integration host factor, beta subunit [Parabacteroides sp. D13]
gi|262409581|ref|ZP_06086122.1| integration host factor, beta subunit [Bacteroides sp. 2_1_22]
gi|229446946|gb|EEO52737.1| DNA-binding protein HU [Bacteroides sp. D1]
gi|229452885|gb|EEO58676.1| DNA-binding protein HU [Bacteroides sp. 2_2_4]
gi|256735732|gb|EEU49065.1| integration host factor, beta subunit [Parabacteroides sp. D13]
gi|262352595|gb|EEZ01694.1| integration host factor, beta subunit [Bacteroides sp. 2_1_22]
Length = 94
Score = 65.9 bits (160), Expect = 2e-09, Method: Composition-based stats.
Identities = 23/91 (25%), Positives = 42/91 (46%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS ++ I+ + ++ + V +V + E+ +L V +RGFGSF V+KRA +
Sbjct: 1 MTKSEIVKEISART-GIDGKAVLAVVEGFMNEVKTSLGKEENVYLRGFGSFIVKKRAQKT 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
AR + + +P F+ +
Sbjct: 60 ARNISKNTTMIIPAHNIPAFKPSDEFLTMVK 90
>gi|325270174|ref|ZP_08136781.1| DNA-binding protein HU [Prevotella multiformis DSM 16608]
gi|324987475|gb|EGC19451.1| DNA-binding protein HU [Prevotella multiformis DSM 16608]
Length = 92
Score = 65.6 bits (159), Expect = 2e-09, Method: Composition-based stats.
Identities = 27/93 (29%), Positives = 42/93 (45%), Gaps = 2/93 (2%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQAL-ANGGRVEIRGFGSFSVRKRAAR 59
M K+ +I IA + +DV +V +E + +L V +RGFGSF V+ RA +
Sbjct: 1 MTKADIINEIATST-GIAKKDVSAVVESFMEAIKGSLLEKKENVYLRGFGSFIVKHRAEK 59
Query: 60 LARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
AR I++ P F+ K E +
Sbjct: 60 TARNISKNTTITIPAHNFPSFKPAKVFIEDMKK 92
>gi|223041461|ref|ZP_03611664.1| integration host factor, alpha chain [Actinobacillus minor 202]
gi|240949160|ref|ZP_04753507.1| integration host factor subunit alpha [Actinobacillus minor
NM305]
gi|223017719|gb|EEF16126.1| integration host factor, alpha chain [Actinobacillus minor 202]
gi|240296463|gb|EER47099.1| integration host factor subunit alpha [Actinobacillus minor
NM305]
Length = 98
Score = 65.6 bits (159), Expect = 2e-09, Method: Composition-based stats.
Identities = 26/89 (29%), Positives = 49/89 (55%), Gaps = 1/89 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K L + +K + + ++ EE+ +AL G V++ GFG+FSVR++ AR
Sbjct: 4 TKIELAEALVEK-CGFEKRTAKLFIDQFFEEIKRALTTGEEVKLSGFGNFSVREKNARPG 62
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P + ++V + V F+AG+ +++R+
Sbjct: 63 RNPKTGESVAVSARRVVVFKAGQKMRDRV 91
>gi|325300026|ref|YP_004259943.1| histone family protein DNA-binding protein [Bacteroides
salanitronis DSM 18170]
gi|324319579|gb|ADY37470.1| histone family protein DNA-binding protein [Bacteroides
salanitronis DSM 18170]
Length = 91
Score = 65.6 bits (159), Expect = 2e-09, Method: Composition-based stats.
Identities = 27/86 (31%), Positives = 44/86 (51%), Gaps = 1/86 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ ++ IA +N ++ Q V + + + +L+N V +RGFGSF V+KRA +
Sbjct: 1 MTKAEIVNEIA-RNTGIDRQTVLTTLEAFMNSVKTSLSNDENVYLRGFGSFIVKKRAQKT 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNL 86
AR I + E +P F+ K
Sbjct: 60 ARNISKNTTIIIPEHNIPAFKPAKTF 85
>gi|187735356|ref|YP_001877468.1| histone family protein DNA-binding protein [Akkermansia
muciniphila ATCC BAA-835]
gi|187425408|gb|ACD04687.1| histone family protein DNA-binding protein [Akkermansia
muciniphila ATCC BAA-835]
Length = 90
Score = 65.6 bits (159), Expect = 2e-09, Method: Composition-based stats.
Identities = 25/87 (28%), Positives = 42/87 (48%), Gaps = 1/87 (1%)
Query: 1 MIKSSLIGTIAKKNPK-LNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAAR 59
M K+ I + ++ + + E +N +LE + +A+ V+ RGFG+F V++R AR
Sbjct: 1 MNKTQFIRELQRELGNDVTSRQAEHALNAVLETIARAVRRRSLVKFRGFGTFRVKRRRAR 60
Query: 60 LARAPLAQKVISVEEKMVPFFRAGKNL 86
+ R P + V E FR L
Sbjct: 61 IVRHPENGGRLLVHESKTMKFRPSSLL 87
>gi|297618190|ref|YP_003703349.1| histone family protein DNA-binding protein [Syntrophothermus
lipocalidus DSM 12680]
gi|297146027|gb|ADI02784.1| histone family protein DNA-binding protein [Syntrophothermus
lipocalidus DSM 12680]
Length = 100
Score = 65.6 bits (159), Expect = 2e-09, Method: Composition-based stats.
Identities = 30/101 (29%), Positives = 48/101 (47%), Gaps = 8/101 (7%)
Query: 1 MIKS-----SLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRK 55
M + L+ IA K L +DV ++ + + AL +G V + GFG+F R+
Sbjct: 1 MNRKAIGGDELVKRIADKT-GLLQKDVRAVLRAFEQVVKDALTDGYEVRLVGFGTFRTRR 59
Query: 56 RAARLARAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDST 96
RAAR + + + + E +VP F GK LKE + +
Sbjct: 60 RAARKGQ--IGGRAYEIPETVVPVFAPGKGLKEAVGGETAK 98
>gi|297516633|ref|ZP_06935019.1| transcriptional regulator HU subunit beta [Escherichia coli OP50]
Length = 63
Score = 65.6 bits (159), Expect = 2e-09, Method: Composition-based stats.
Identities = 22/64 (34%), Positives = 37/64 (57%), Gaps = 1/64 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI IA ++ + ++ ++ +T++L G V + GFG+F+V++RAAR
Sbjct: 1 MNKSQLIDKIAA-GADISKAAAGRALDAIIASVTESLKEGDDVALVGFGTFAVKERAART 59
Query: 61 ARAP 64
R P
Sbjct: 60 GRNP 63
>gi|189220184|ref|YP_001940824.1| nucleoid DNA-binding protein [Methylacidiphilum infernorum V4]
gi|189187042|gb|ACD84227.1| Bacterial nucleoid DNA-binding protein [Methylacidiphilum
infernorum V4]
Length = 99
Score = 65.6 bits (159), Expect = 2e-09, Method: Composition-based stats.
Identities = 26/90 (28%), Positives = 42/90 (46%), Gaps = 1/90 (1%)
Query: 2 IKSSLIGTIAKKNP-KLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
K+SL+ + K EK V+ ++ + + G V++ GFG+F V R AR+
Sbjct: 10 NKASLVEVVQKNMGKDTTKALAEKSVDAVINGLKTGVLKNGIVQLIGFGTFRVITRKARM 69
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
P + I ++ F GK LKE+L
Sbjct: 70 GVNPKTGEKIKIKASKTVRFSPGKELKEKL 99
>gi|209972969|ref|YP_002300416.1| TF1 [Bacillus phage SPO1]
gi|135625|sp|P04445|TF1_BPSP1 RecName: Full=Transcription factor 1
gi|1942238|pdb|1WTU|A Chain A, Transcription Factor 1, Nmr, Minimized Average Structure
gi|1942239|pdb|1WTU|B Chain B, Transcription Factor 1, Nmr, Minimized Average Structure
gi|216145|gb|AAA32599.1| transcription factor 1 [Bacillus phage SPO1]
gi|209871289|gb|ACI91045.1| TF1 [Bacillus phage SPO1]
Length = 99
Score = 65.6 bits (159), Expect = 2e-09, Method: Composition-based stats.
Identities = 23/89 (25%), Positives = 43/89 (48%), Gaps = 1/89 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI IA+ +L V K++ + T+ +A G +V++ GF + R AR
Sbjct: 1 MNKTELIKAIAQDT-ELTQVSVSKMLASFEKITTETVAKGDKVQLTGFLNIKPVARQARK 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKER 89
P Q+ + + + + G++LK+
Sbjct: 60 GFNPQTQEALEIAPSVGVSVKPGESLKKA 88
>gi|325856433|ref|ZP_08172149.1| DNA-binding protein HU [Prevotella denticola CRIS 18C-A]
gi|327312503|ref|YP_004327940.1| DNA-binding protein HU [Prevotella denticola F0289]
gi|325483617|gb|EGC86589.1| DNA-binding protein HU [Prevotella denticola CRIS 18C-A]
gi|326945422|gb|AEA21307.1| DNA-binding protein HU [Prevotella denticola F0289]
Length = 92
Score = 65.6 bits (159), Expect = 2e-09, Method: Composition-based stats.
Identities = 27/93 (29%), Positives = 42/93 (45%), Gaps = 2/93 (2%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQAL-ANGGRVEIRGFGSFSVRKRAAR 59
M K+ +I IA + +DV +V +E + +L V +RGFGSF V+ RA +
Sbjct: 1 MTKADIINEIATST-GIAKKDVSAVVESFMEAIKGSLLEKKENVYLRGFGSFIVKHRAEK 59
Query: 60 LARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
AR I++ P F+ K E +
Sbjct: 60 TARNISKNTTITIPAHNFPSFKPAKTFIEDMKK 92
>gi|307111764|gb|EFN59998.1| hypothetical protein CHLNCDRAFT_15526 [Chlorella variabilis]
Length = 82
Score = 65.6 bits (159), Expect = 2e-09, Method: Composition-based stats.
Identities = 29/81 (35%), Positives = 41/81 (50%), Gaps = 1/81 (1%)
Query: 3 KSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLAR 62
K LI + + +L+ + VN LL+ + +A G RV I GFG F R RAAR R
Sbjct: 3 KRELIQAVKDQ-AQLSGPQADAAVNALLDTIVGTVAKGQRVAITGFGVFEARTRAARRGR 61
Query: 63 APLAQKVISVEEKMVPFFRAG 83
P + + + E + P F AG
Sbjct: 62 NPKTGEELQIAETVAPAFSAG 82
>gi|254446217|ref|ZP_05059693.1| DNA-binding protein HU [Verrucomicrobiae bacterium DG1235]
gi|198260525|gb|EDY84833.1| DNA-binding protein HU [Verrucomicrobiae bacterium DG1235]
Length = 104
Score = 65.6 bits (159), Expect = 2e-09, Method: Composition-based stats.
Identities = 29/104 (27%), Positives = 50/104 (48%), Gaps = 14/104 (13%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGR--------------VEIR 46
M KS LI I + + EK ++ +L + A+ G+ +++
Sbjct: 1 MNKSELIAEIQSNLGASSKAEAEKALSAVLSSIKTAVKKAGKEVKLRDKDSKDAVAIQLV 60
Query: 47 GFGSFSVRKRAARLARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
GFG+FSV KR+AR PL ++ + ++ F+AG LK++L
Sbjct: 61 GFGTFSVGKRSARTGINPLTKEPLKIKASKNVKFKAGAGLKDQL 104
>gi|306521780|ref|ZP_07408127.1| DNA-binding protein HU [Clostridium difficile QCD-32g58]
Length = 64
Score = 65.6 bits (159), Expect = 2e-09, Method: Composition-based stats.
Identities = 24/63 (38%), Positives = 36/63 (57%), Gaps = 1/63 (1%)
Query: 30 LEEMTQALANGGRVEIRGFGSFSVRKRAARLARAPLAQKV-ISVEEKMVPFFRAGKNLKE 88
+ + AL N +V++ GFG+F R+RAAR R P + I + P F+AGK LK+
Sbjct: 1 MSSVQDALVNNEKVQLVGFGTFETRERAARQGRNPRDPEQVIDIPASKAPVFKAGKGLKD 60
Query: 89 RLN 91
+N
Sbjct: 61 IIN 63
>gi|225873629|ref|YP_002755088.1| DNA-binding protein HU [Acidobacterium capsulatum ATCC 51196]
gi|225793084|gb|ACO33174.1| DNA-binding protein HU [Acidobacterium capsulatum ATCC 51196]
Length = 98
Score = 65.6 bits (159), Expect = 2e-09, Method: Composition-based stats.
Identities = 24/90 (26%), Positives = 43/90 (47%), Gaps = 1/90 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K++L+ +A+K +L + +++L E + G I G G +R AR+
Sbjct: 5 MTKTALVRHMAEKL-ELTNKQAAAFLDLLAETAIKETKKNGVFVIPGLGRLVKAERKARI 63
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P + I ++ K V FR K+ K+ +
Sbjct: 64 GRNPQTGEQIKIKAKTVVKFRVAKSAKDVI 93
>gi|114327347|ref|YP_744504.1| DNA-binding protein HU [Granulibacter bethesdensis CGDNIH1]
gi|114315521|gb|ABI61581.1| DNA-binding protein HU [Granulibacter bethesdensis CGDNIH1]
Length = 100
Score = 65.6 bits (159), Expect = 2e-09, Method: Composition-based stats.
Identities = 23/90 (25%), Positives = 42/90 (46%), Gaps = 1/90 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ I + + + +L + N L+ + + + G+ + FG+F+VRK AR
Sbjct: 12 MSKA-FIAQVIQDSAELTGVAANRTANDLITAIVKEMKKNGKFTLPSFGTFTVRKTKARK 70
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
P + I V+ F+A NLK+ +
Sbjct: 71 GLNPRTGEQIKVKAGKTVRFKASPNLKKSV 100
>gi|260912465|ref|ZP_05919002.1| DNA-binding protein HU [Prevotella sp. oral taxon 472 str. F0295]
gi|260633437|gb|EEX51590.1| DNA-binding protein HU [Prevotella sp. oral taxon 472 str. F0295]
Length = 93
Score = 65.6 bits (159), Expect = 2e-09, Method: Composition-based stats.
Identities = 27/91 (29%), Positives = 46/91 (50%), Gaps = 2/91 (2%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQAL-ANGGRVEIRGFGSFSVRKRAAR 59
M K+ +I IA + + +DV +V +E + +L V +RGFGSF ++ RAA+
Sbjct: 1 MTKADIINEIAIQT-GIQKKDVSVVVESFMETIKGSLLDKKDNVYLRGFGSFIIKHRAAK 59
Query: 60 LARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
AR I++ +P F+ K+ E +
Sbjct: 60 TARNIAKNTTITIAAHDLPCFKPAKSFVESM 90
>gi|291515896|emb|CBK65106.1| Bacterial nucleoid DNA-binding protein [Alistipes shahii WAL
8301]
Length = 90
Score = 65.6 bits (159), Expect = 2e-09, Method: Composition-based stats.
Identities = 28/91 (30%), Positives = 48/91 (52%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ ++ IA K+ + V+ IV +E + +L V +RGFGSF V+KRA ++
Sbjct: 1 MTKADIVSEIA-KSTGVEKVQVQAIVEAFMESIKTSLTQKNNVYLRGFGSFIVKKRAKKV 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
AR I++ E +P F+ K+ ++
Sbjct: 60 ARNISKNTTITIPEHNIPAFKPAKSFAAKVK 90
>gi|160886223|ref|ZP_02067226.1| hypothetical protein BACOVA_04230 [Bacteroides ovatus ATCC 8483]
gi|237715013|ref|ZP_04545494.1| DNA-binding protein HU [Bacteroides sp. D1]
gi|237723035|ref|ZP_04553516.1| DNA-binding protein HU [Bacteroides sp. 2_2_4]
gi|255690595|ref|ZP_05414270.1| DNA-binding protein HU [Bacteroides finegoldii DSM 17565]
gi|260173653|ref|ZP_05760065.1| DNA-binding protein HU [Bacteroides sp. D2]
gi|262409038|ref|ZP_06085583.1| integration host factor, beta subunit [Bacteroides sp. 2_1_22]
gi|293372582|ref|ZP_06618964.1| DNA-binding protein HU [Bacteroides ovatus SD CMC 3f]
gi|294647093|ref|ZP_06724699.1| DNA-binding protein HU [Bacteroides ovatus SD CC 2a]
gi|294807153|ref|ZP_06765970.1| DNA-binding protein HU [Bacteroides xylanisolvens SD CC 1b]
gi|298481899|ref|ZP_07000089.1| DNA-binding protein HU [Bacteroides sp. D22]
gi|299146728|ref|ZP_07039796.1| DNA-binding protein HU [Bacteroides sp. 3_1_23]
gi|315921915|ref|ZP_07918155.1| DNA binding protein [Bacteroides sp. D2]
gi|156108108|gb|EDO09853.1| hypothetical protein BACOVA_04230 [Bacteroides ovatus ATCC 8483]
gi|229444846|gb|EEO50637.1| DNA-binding protein HU [Bacteroides sp. D1]
gi|229447557|gb|EEO53348.1| DNA-binding protein HU [Bacteroides sp. 2_2_4]
gi|260623864|gb|EEX46735.1| DNA-binding protein HU [Bacteroides finegoldii DSM 17565]
gi|262353249|gb|EEZ02344.1| integration host factor, beta subunit [Bacteroides sp. 2_1_22]
gi|292632391|gb|EFF50987.1| DNA-binding protein HU [Bacteroides ovatus SD CMC 3f]
gi|292637557|gb|EFF55969.1| DNA-binding protein HU [Bacteroides ovatus SD CC 2a]
gi|294445653|gb|EFG14303.1| DNA-binding protein HU [Bacteroides xylanisolvens SD CC 1b]
gi|295087866|emb|CBK69389.1| Bacterial nucleoid DNA-binding protein [Bacteroides xylanisolvens
XB1A]
gi|298272121|gb|EFI13692.1| DNA-binding protein HU [Bacteroides sp. D22]
gi|298517219|gb|EFI41100.1| DNA-binding protein HU [Bacteroides sp. 3_1_23]
gi|313695790|gb|EFS32625.1| DNA binding protein [Bacteroides sp. D2]
Length = 91
Score = 65.6 bits (159), Expect = 2e-09, Method: Composition-based stats.
Identities = 28/86 (32%), Positives = 44/86 (51%), Gaps = 1/86 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ ++ I KK ++ Q V V ++ + +L+N V +RGFGSF V+KRA +
Sbjct: 1 MTKADIVNEITKKT-GIDKQTVLTTVEAFMDAVKDSLSNDENVYLRGFGSFVVKKRAQKT 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNL 86
AR I + E +P F+ K
Sbjct: 60 ARNISKNTTIIIPEHNIPAFKPAKTF 85
>gi|330993012|ref|ZP_08316950.1| DNA-binding protein HU-alpha [Gluconacetobacter sp. SXCC-1]
gi|329759782|gb|EGG76288.1| DNA-binding protein HU-alpha [Gluconacetobacter sp. SXCC-1]
Length = 89
Score = 65.6 bits (159), Expect = 2e-09, Method: Composition-based stats.
Identities = 21/90 (23%), Positives = 40/90 (44%), Gaps = 1/90 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ I + + + + L++ + + L G + FG+F+V+K AR
Sbjct: 1 MSKA-FIAAVIQDSIDCTGVAANQAAADLIQAIVKELKREGGFTLPSFGTFTVKKTKARQ 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
A P + + V+ F+A NLK+ +
Sbjct: 60 ALNPRTGEPVKVKAGKTVRFKASPNLKKAV 89
>gi|281424724|ref|ZP_06255637.1| DNA-binding protein HU-beta [Prevotella oris F0302]
gi|299142061|ref|ZP_07035195.1| DNA-binding protein HU-beta (NS1) (HU-1) [Prevotella oris C735]
gi|281401094|gb|EFB31925.1| DNA-binding protein HU-beta [Prevotella oris F0302]
gi|298576523|gb|EFI48395.1| DNA-binding protein HU-beta (NS1) (HU-1) [Prevotella oris C735]
Length = 91
Score = 65.2 bits (158), Expect = 3e-09, Method: Composition-based stats.
Identities = 22/64 (34%), Positives = 35/64 (54%), Gaps = 1/64 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI IA L+ D +K ++ + +AL G ++++ GFG+FSV +R AR
Sbjct: 1 MNKTELIDKIAA-GAGLSKADAKKALDATTAAIKEALVAGDKIQLVGFGTFSVNERPARE 59
Query: 61 ARAP 64
P
Sbjct: 60 GINP 63
>gi|322379007|ref|ZP_08053410.1| DNA-binding protein hu [Helicobacter suis HS1]
gi|322380772|ref|ZP_08054878.1| dna-binding protein hu [Helicobacter suis HS5]
gi|321146776|gb|EFX41570.1| dna-binding protein hu [Helicobacter suis HS5]
gi|321148499|gb|EFX42996.1| DNA-binding protein hu [Helicobacter suis HS1]
Length = 105
Score = 65.2 bits (158), Expect = 3e-09, Method: Composition-based stats.
Identities = 24/90 (26%), Positives = 46/90 (51%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ + + + + +D E ++ + + +AL+ VE+ GFG F V + +
Sbjct: 1 MKKAEFVELMKEAGSFDSRKDAEFALDGFVRAVQKALSTHESVELVGFGKFEVALQKGKS 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
+ P + K ++KMVP F+ GK LK+ +
Sbjct: 61 GKVPGSDKTYMTKDKMVPKFKPGKVLKDIV 90
>gi|330995098|ref|ZP_08319015.1| DNA-binding protein HU [Paraprevotella xylaniphila YIT 11841]
gi|329576674|gb|EGG58177.1| DNA-binding protein HU [Paraprevotella xylaniphila YIT 11841]
Length = 495
Score = 65.2 bits (158), Expect = 3e-09, Method: Composition-based stats.
Identities = 21/96 (21%), Positives = 40/96 (41%), Gaps = 3/96 (3%)
Query: 1 MIKSSLIGTIAKKNP---KLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRA 57
M K LI +A L +D + V + E + + L V+++G G+F +
Sbjct: 1 MDKKVLIQDLADGLVLRRGLPKKDADVFVRSVFEIIGEYLQTDKIVKVKGLGTFKLVTVD 60
Query: 58 ARLARAPLAQKVISVEEKMVPFFRAGKNLKERLNSP 93
+R + + I ++E F L++ +N P
Sbjct: 61 SRESVDVNTGERIVIKEYTKVNFTPDPVLRDAVNKP 96
>gi|330995099|ref|ZP_08319016.1| DNA-binding protein HU [Paraprevotella xylaniphila YIT 11841]
gi|329576675|gb|EGG58178.1| DNA-binding protein HU [Paraprevotella xylaniphila YIT 11841]
Length = 90
Score = 65.2 bits (158), Expect = 3e-09, Method: Composition-based stats.
Identities = 25/90 (27%), Positives = 45/90 (50%), Gaps = 1/90 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M I ++++ +D ++ L+ EMT+ L + + I+ GSF VRK+ R+
Sbjct: 1 MNNKEFIAELSRRL-GYTVKDTSSLMVALVAEMTEELEDENVIAIQNIGSFEVRKKQERV 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
P Q+ + V K+V F+ + KER+
Sbjct: 60 VVNPATQQRMLVPPKLVINFKPSTSFKERM 89
>gi|288799936|ref|ZP_06405395.1| DNA-binding protein HU [Prevotella sp. oral taxon 299 str. F0039]
gi|288333184|gb|EFC71663.1| DNA-binding protein HU [Prevotella sp. oral taxon 299 str. F0039]
Length = 93
Score = 65.2 bits (158), Expect = 3e-09, Method: Composition-based stats.
Identities = 28/93 (30%), Positives = 48/93 (51%), Gaps = 2/93 (2%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQAL-ANGGRVEIRGFGSFSVRKRAAR 59
M K+ +I IA L +DV +V L+ + +L V +RGFGSF+++ RAA+
Sbjct: 1 MTKADIINEIALST-GLQKKDVSVVVESLMGTIKDSLLNKKENVYLRGFGSFTIKHRAAK 59
Query: 60 LARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
AR L ++++ P F+ K+ E++
Sbjct: 60 TARNILKNTTMTIDAHDFPSFKPAKSFAEKMKQ 92
>gi|27383423|ref|NP_774952.1| HNS-type DNA binding protein [Bradyrhizobium japonicum USDA 110]
gi|27356598|dbj|BAC53577.1| HNS-type DNA binding protein [Bradyrhizobium japonicum USDA 110]
Length = 92
Score = 65.2 bits (158), Expect = 3e-09, Method: Composition-based stats.
Identities = 23/88 (26%), Positives = 35/88 (39%), Gaps = 1/88 (1%)
Query: 4 SSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLARA 63
+ + IAK L + IV+ + + + A A+ + GFG F V+ R R
Sbjct: 5 TEIADEIAKAY-NLPKAQAKAIVDGVFKSIADAAASDAETNVPGFGKFKVKHTPEREGRN 63
Query: 64 PLAQKVISVEEKMVPFFRAGKNLKERLN 91
P I + F K LK+ LN
Sbjct: 64 PSTGATIKIAAAKKLTFAPAKALKDVLN 91
>gi|282881458|ref|ZP_06290132.1| DNA-binding protein HU [Prevotella timonensis CRIS 5C-B1]
gi|281304684|gb|EFA96770.1| DNA-binding protein HU [Prevotella timonensis CRIS 5C-B1]
Length = 94
Score = 65.2 bits (158), Expect = 3e-09, Method: Composition-based stats.
Identities = 25/95 (26%), Positives = 47/95 (49%), Gaps = 2/95 (2%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQAL-ANGGRVEIRGFGSFSVRKRAAR 59
M K+ +I IA L ++V +V + ++ ++L V +RGFGSF ++ RAA+
Sbjct: 1 MTKADIINEIAAST-GLQKKEVAVVVESFMSKVKESLLEKKENVYLRGFGSFIIKHRAAK 59
Query: 60 LARAPLAQKVISVEEKMVPFFRAGKNLKERLNSPD 94
AR I+++ +P F+ K+ + +
Sbjct: 60 TARNIQKNTTITIDAHNLPSFKPSKSFVNAMKESN 94
>gi|242309055|ref|ZP_04808210.1| conserved hypothetical protein [Helicobacter pullorum MIT
98-5489]
gi|239524479|gb|EEQ64345.1| conserved hypothetical protein [Helicobacter pullorum MIT
98-5489]
Length = 96
Score = 65.2 bits (158), Expect = 3e-09, Method: Composition-based stats.
Identities = 25/91 (27%), Positives = 43/91 (47%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQAL-ANGGRVEIRGFGSFSVRKRAAR 59
M KS + + + ++ EK ++ + + +AL G VE+ GFG F + +
Sbjct: 1 MNKSEFVDLVKQVGEYETKKEAEKAISAFVAAIEKALSKKDGSVELVGFGKFETVLQKGK 60
Query: 60 LARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
P K ++K VP F+AGK LK+ +
Sbjct: 61 EGTVPGTNKKYKTKDKFVPKFKAGKGLKDAV 91
>gi|313114932|ref|ZP_07800429.1| DNA-binding protein HU [Faecalibacterium cf. prausnitzii KLE1255]
gi|310622754|gb|EFQ06212.1| DNA-binding protein HU [Faecalibacterium cf. prausnitzii KLE1255]
Length = 101
Score = 65.2 bits (158), Expect = 3e-09, Method: Composition-based stats.
Identities = 24/99 (24%), Positives = 46/99 (46%), Gaps = 1/99 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M +S +I T+A+K VE ++ + +++ L +V I GFG F +R R +
Sbjct: 1 MTRSQMIETVARKT-GFTEAQVETTMDAMFDQIADCLRADEKVTIAGFGRFEMRPRKPKA 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDSTLSN 99
P + +E +P F+A K++L + + +
Sbjct: 60 YTNPKTKVSSRLESTSIPGFKASGRFKQKLEAGKAAKTE 98
>gi|282858820|ref|ZP_06267965.1| DNA-binding protein HU [Prevotella bivia JCVIHMP010]
gi|282588389|gb|EFB93549.1| DNA-binding protein HU [Prevotella bivia JCVIHMP010]
Length = 443
Score = 65.2 bits (158), Expect = 3e-09, Method: Composition-based stats.
Identities = 27/88 (30%), Positives = 43/88 (48%), Gaps = 1/88 (1%)
Query: 6 LIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLARAPL 65
L IAKK KL+ D K V + + +T+ L N G+V+I+G G+F V+ R +
Sbjct: 9 LAIAIAKKY-KLSNVDATKFVEAIFDIVTEELKNNGQVKIKGLGTFKVQSVKPRESVNVN 67
Query: 66 AQKVISVEEKMVPFFRAGKNLKERLNSP 93
+ + +E F +KE +N P
Sbjct: 68 TGERVLIEGHDKISFTPDATMKELVNKP 95
>gi|260592454|ref|ZP_05857912.1| putative integration host factor IHF alpha subunit [Prevotella
veroralis F0319]
gi|260535500|gb|EEX18117.1| putative integration host factor IHF alpha subunit [Prevotella
veroralis F0319]
Length = 376
Score = 65.2 bits (158), Expect = 3e-09, Method: Composition-based stats.
Identities = 23/95 (24%), Positives = 42/95 (44%), Gaps = 2/95 (2%)
Query: 1 MIKS--SLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAA 58
M K+ +I + K KL+ D V+ ++ L G +V+I+G G+F V++
Sbjct: 1 MAKTVIQIIASALAKQYKLSAADGATFVDTFFAIISDELKKGNQVKIKGLGTFKVQRVKP 60
Query: 59 RLARAPLAQKVISVEEKMVPFFRAGKNLKERLNSP 93
R + + + +E F +KE +N P
Sbjct: 61 RESVNVNTGERVLIEGHDKVSFTPDAAMKELVNKP 95
>gi|23007144|ref|ZP_00049143.1| COG0776: Bacterial nucleoid DNA-binding protein [Magnetospirillum
magnetotacticum MS-1]
Length = 74
Score = 65.2 bits (158), Expect = 3e-09, Method: Composition-based stats.
Identities = 27/52 (51%), Positives = 37/52 (71%)
Query: 40 GGRVEIRGFGSFSVRKRAARLARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
G RVE+RGFG+FSV++R AR R P + +SV EK +P F+ GK ++ RLN
Sbjct: 12 GDRVELRGFGAFSVKRREARRGRNPRTGESVSVSEKAIPVFKTGKEMRLRLN 63
>gi|34557406|ref|NP_907221.1| hypothetical protein WS1019 [Wolinella succinogenes DSM 1740]
gi|34483122|emb|CAE10121.1| hypothetical protein WS1019 [Wolinella succinogenes]
Length = 99
Score = 65.2 bits (158), Expect = 3e-09, Method: Composition-based stats.
Identities = 24/90 (26%), Positives = 43/90 (47%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ + + + ++ EK V+ + +AL G VE+ GFG F + +
Sbjct: 5 MNKAEFVELVKEVGGFETKKEAEKAVSAFTAAVEKALEKKGNVELVGFGKFEAVLQKGKE 64
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
+ P + K ++K VP F+ GK LK+ +
Sbjct: 65 GKVPGSDKKYKTKDKFVPKFKPGKGLKDLV 94
>gi|83319387|ref|YP_424299.1| DNA-binding protein, HU [Mycoplasma capricolum subsp. capricolum
ATCC 27343]
gi|83283273|gb|ABC01205.1| DNA-binding protein, HU [Mycoplasma capricolum subsp. capricolum
ATCC 27343]
Length = 92
Score = 65.2 bits (158), Expect = 3e-09, Method: Composition-based stats.
Identities = 24/90 (26%), Positives = 46/90 (51%), Gaps = 1/90 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K LI IA + +++ ++V IV + E +++ L + V I FG F++ ++ +R
Sbjct: 1 MTKKELINKIALET-EVSKKEVNLIVKKVFELISKNLLDKKEVLISDFGKFTILQKVSRK 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
P+ ++ + + F+ K LKE L
Sbjct: 60 GVNPITRQKMVIPASKTVKFKPSKQLKELL 89
>gi|153808081|ref|ZP_01960749.1| hypothetical protein BACCAC_02367 [Bacteroides caccae ATCC 43185]
gi|149128984|gb|EDM20200.1| hypothetical protein BACCAC_02367 [Bacteroides caccae ATCC 43185]
Length = 91
Score = 65.2 bits (158), Expect = 3e-09, Method: Composition-based stats.
Identities = 27/86 (31%), Positives = 43/86 (50%), Gaps = 1/86 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ ++ I KK ++ V V ++ + +L+N V +RGFGSF V+KRA +
Sbjct: 1 MTKADIVNEITKKT-GIDKTTVLTTVEAFMDAVKDSLSNDENVYLRGFGSFVVKKRAQKT 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNL 86
AR I + E +P F+ K
Sbjct: 60 ARNISKNTTIIIPEHNIPAFKPAKTF 85
>gi|223937617|ref|ZP_03629520.1| histone family protein DNA-binding protein [bacterium Ellin514]
gi|223893780|gb|EEF60238.1| histone family protein DNA-binding protein [bacterium Ellin514]
Length = 95
Score = 65.2 bits (158), Expect = 3e-09, Method: Composition-based stats.
Identities = 24/88 (27%), Positives = 39/88 (44%), Gaps = 3/88 (3%)
Query: 3 KSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLAR 62
KS L IA KN + + +I++ + E + N + G G + R AR+ R
Sbjct: 7 KSQLAAAIADKN-GITKKQAVEILDHIAELAYKNAKN--TFTLPGLGKLVLVNRKARVGR 63
Query: 63 APLAQKVISVEEKMVPFFRAGKNLKERL 90
P + I++ K V FR K K+ +
Sbjct: 64 NPATGEQINIPAKRVVKFRVAKAAKDSI 91
>gi|307565356|ref|ZP_07627849.1| DNA-binding protein HU [Prevotella amnii CRIS 21A-A]
gi|307346025|gb|EFN91369.1| DNA-binding protein HU [Prevotella amnii CRIS 21A-A]
Length = 424
Score = 65.2 bits (158), Expect = 3e-09, Method: Composition-based stats.
Identities = 23/88 (26%), Positives = 39/88 (44%), Gaps = 1/88 (1%)
Query: 6 LIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLARAPL 65
L IAKKN L+ D K V + + L N V+I+G G+F ++ R +
Sbjct: 2 LATAIAKKN-NLSNADAIKFVETMFNIIIDELKNSNPVKIKGLGTFKLQSVKPRESVNVN 60
Query: 66 AQKVISVEEKMVPFFRAGKNLKERLNSP 93
+ + +E F + +K+ +N P
Sbjct: 61 TGERVLIEGHDKISFTPDQAMKDIVNKP 88
>gi|124007394|ref|ZP_01692101.1| DNA-binding protein HU [Microscilla marina ATCC 23134]
gi|123987227|gb|EAY26967.1| DNA-binding protein HU [Microscilla marina ATCC 23134]
Length = 105
Score = 65.2 bits (158), Expect = 3e-09, Method: Composition-based stats.
Identities = 29/95 (30%), Positives = 49/95 (51%), Gaps = 1/95 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ +I IA+K + V+ V + + ++ NG + +RGFGSF +KRA ++
Sbjct: 1 MTKAEVISEIAEKT-GVEKDKVQITVEAFFKVIQNSMENGENIYVRGFGSFINKKRATKI 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDS 95
AR K +++ E VP F+ K ER+ +
Sbjct: 60 ARNISKNKAMTIPEHYVPSFKPSKVFIERIKNSAK 94
>gi|320334434|ref|YP_004171145.1| histone family protein DNA-binding protein [Deinococcus
maricopensis DSM 21211]
gi|319755723|gb|ADV67480.1| histone family protein DNA-binding protein [Deinococcus
maricopensis DSM 21211]
Length = 115
Score = 64.8 bits (157), Expect = 3e-09, Method: Composition-based stats.
Identities = 21/85 (24%), Positives = 38/85 (44%), Gaps = 1/85 (1%)
Query: 3 KSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLAR 62
K+ L+ + + LN + + ++ L + AL +G V + G G+F+VR A R
Sbjct: 29 KTQLVDLVTDRTS-LNRKQSAEAIDAALGIIVSALRDGKSVGLPGLGTFAVRATAERTGV 87
Query: 63 APLAQKVISVEEKMVPFFRAGKNLK 87
P + I++ F+ LK
Sbjct: 88 KPGTSERITIAAGKKVGFKVASTLK 112
>gi|91792857|ref|YP_562508.1| histone-like DNA-binding protein [Shewanella denitrificans OS217]
gi|91714859|gb|ABE54785.1| histone-like DNA-binding protein [Shewanella denitrificans OS217]
Length = 94
Score = 64.8 bits (157), Expect = 3e-09, Method: Composition-based stats.
Identities = 27/96 (28%), Positives = 47/96 (48%), Gaps = 7/96 (7%)
Query: 1 MIKSSLIGTIAKKNPKL---NYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRA 57
M K LI +++++ + ++E+++ + QAL G +V + FG+F + R
Sbjct: 1 MNKQQLIASMSRQLQQSQRQTKMELEQVL----ASIKQALIEGEKVFLPQFGTFELSYRL 56
Query: 58 ARLARAPLAQKVISVEEKMVPFFRAGKNLKERLNSP 93
++AR P I VE + VP + NLK LN
Sbjct: 57 PQIARHPQTGASIEVEGQNVPRIKFSPNLKAALNPK 92
>gi|262341299|ref|YP_003284154.1| DNA-binding protein HU [Blattabacterium sp. (Blattella germanica)
str. Bge]
gi|262272636|gb|ACY40544.1| DNA-binding protein HU [Blattabacterium sp. (Blattella germanica)
str. Bge]
Length = 94
Score = 64.8 bits (157), Expect = 3e-09, Method: Composition-based stats.
Identities = 25/92 (27%), Positives = 47/92 (51%), Gaps = 1/92 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ +I I + D +K++ ++++ Q+L +G V +RGFGSF ++ RA +L
Sbjct: 1 MTKADIITEIISET-GSERIDTQKVIETFMKKIKQSLTSGENVYLRGFGSFIIKYRAKKL 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R + I + +P F+ K+ E +
Sbjct: 60 GRHISKDESIVIPAHNIPAFKPAKSFTELVKK 91
>gi|15616751|ref|NP_239963.1| integration host factor alpha-subunit [Buchnera aphidicola str. APS
(Acyrthosiphon pisum)]
gi|219681506|ref|YP_002467891.1| integration host factor alpha-subunit [Buchnera aphidicola str. 5A
(Acyrthosiphon pisum)]
gi|219682062|ref|YP_002468446.1| integration host factor alpha-subunit [Buchnera aphidicola str.
Tuc7 (Acyrthosiphon pisum)]
gi|257471187|ref|ZP_05635186.1| integration host factor subunit alpha [Buchnera aphidicola str.
LSR1 (Acyrthosiphon pisum)]
gi|11132925|sp|P57231|IHFA_BUCAI RecName: Full=Integration host factor subunit alpha;
Short=IHF-alpha
gi|254803511|sp|B8D8T2|IHFA_BUCA5 RecName: Full=Integration host factor subunit alpha;
Short=IHF-alpha
gi|254803512|sp|B8D736|IHFA_BUCAT RecName: Full=Integration host factor subunit alpha;
Short=IHF-alpha
gi|25294341|pir||A84945 integration host factor alpha-subunit [imported] - Buchnera sp.
(strain APS)
gi|10038814|dbj|BAB12849.1| integration host factor alpha-subunit [Buchnera aphidicola str. APS
(Acyrthosiphon pisum)]
gi|219621795|gb|ACL29951.1| integration host factor alpha-subunit [Buchnera aphidicola str.
Tuc7 (Acyrthosiphon pisum)]
gi|219624349|gb|ACL30504.1| integration host factor alpha-subunit [Buchnera aphidicola str. 5A
(Acyrthosiphon pisum)]
gi|311085875|gb|ADP65957.1| integration host factor subunit alpha [Buchnera aphidicola str.
LL01 (Acyrthosiphon pisum)]
gi|311087027|gb|ADP67107.1| integration host factor subunit alpha [Buchnera aphidicola str.
JF99 (Acyrthosiphon pisum)]
gi|311087593|gb|ADP67672.1| integration host factor subunit alpha [Buchnera aphidicola str.
JF98 (Acyrthosiphon pisum)]
Length = 102
Score = 64.8 bits (157), Expect = 4e-09, Method: Composition-based stats.
Identities = 26/99 (26%), Positives = 56/99 (56%), Gaps = 1/99 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+++ + +K +L ++ ++ V EE+ ++L G V++ GFG+F ++K+ AR
Sbjct: 4 TKAAISENLFEKL-QLTKKESKEFVEFFFEEVRKSLEKGEAVKLSGFGNFQIKKKKARPG 62
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDSTLSNS 100
R P ++ + + V F+AG+ LK ++N+ +N+
Sbjct: 63 RNPRTGEIFLITARRVVTFKAGQKLKNKINNYLIKKNNN 101
>gi|323345506|ref|ZP_08085729.1| DNA-binding protein HU-beta [Prevotella oralis ATCC 33269]
gi|323093620|gb|EFZ36198.1| DNA-binding protein HU-beta [Prevotella oralis ATCC 33269]
Length = 97
Score = 64.8 bits (157), Expect = 4e-09, Method: Composition-based stats.
Identities = 22/92 (23%), Positives = 47/92 (51%), Gaps = 1/92 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M I +++++ ++ + +V +++ + +G V I GFG+F ++KR R+
Sbjct: 1 MNNKEFISELSQRS-GYTQENTQNLVRGIIDAFGISFDDGEDVHIGGFGTFELKKRTERV 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
P + + V K+V FR ++KE+L +
Sbjct: 60 VVNPSTGQRMMVPPKLVLTFRPVASIKEKLKN 91
>gi|237709945|ref|ZP_04540426.1| DNA-binding protein HU [Bacteroides sp. 9_1_42FAA]
gi|229456038|gb|EEO61759.1| DNA-binding protein HU [Bacteroides sp. 9_1_42FAA]
Length = 90
Score = 64.8 bits (157), Expect = 4e-09, Method: Composition-based stats.
Identities = 24/89 (26%), Positives = 49/89 (55%), Gaps = 1/89 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M I ++++ +D ++V+ ++ MTQ L +G + I+GFG+F V+K+ R+
Sbjct: 1 MNNKEFISELSRRL-GYTNKDTSQLVSSVIGVMTQELQDGNNIVIQGFGTFEVKKKLERI 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKER 89
+ P Q+ + + K+V ++ LKE+
Sbjct: 60 SINPATQQRMLIPPKLVLTYKPSVTLKEK 88
>gi|150006582|ref|YP_001301326.1| DNA-binding protein HU [Bacteroides vulgatus ATCC 8482]
gi|212691238|ref|ZP_03299366.1| hypothetical protein BACDOR_00729 [Bacteroides dorei DSM 17855]
gi|237712330|ref|ZP_04542811.1| DNA-binding protein HU [Bacteroides sp. 9_1_42FAA]
gi|237726466|ref|ZP_04556947.1| DNA-binding protein HU [Bacteroides sp. D4]
gi|254881516|ref|ZP_05254226.1| DNA-binding protein HU [Bacteroides sp. 4_3_47FAA]
gi|265752041|ref|ZP_06087834.1| DNA-binding protein HU [Bacteroides sp. 3_1_33FAA]
gi|294775457|ref|ZP_06740970.1| DNA-binding protein HU [Bacteroides vulgatus PC510]
gi|319642901|ref|ZP_07997537.1| DNA-binding protein HU [Bacteroides sp. 3_1_40A]
gi|149935006|gb|ABR41704.1| DNA-binding protein HU [Bacteroides vulgatus ATCC 8482]
gi|212666470|gb|EEB27042.1| hypothetical protein BACDOR_00729 [Bacteroides dorei DSM 17855]
gi|229434992|gb|EEO45069.1| DNA-binding protein HU [Bacteroides dorei 5_1_36/D4]
gi|229453651|gb|EEO59372.1| DNA-binding protein HU [Bacteroides sp. 9_1_42FAA]
gi|254834309|gb|EET14618.1| DNA-binding protein HU [Bacteroides sp. 4_3_47FAA]
gi|263236833|gb|EEZ22303.1| DNA-binding protein HU [Bacteroides sp. 3_1_33FAA]
gi|294450698|gb|EFG19185.1| DNA-binding protein HU [Bacteroides vulgatus PC510]
gi|317385449|gb|EFV66392.1| DNA-binding protein HU [Bacteroides sp. 3_1_40A]
Length = 91
Score = 64.8 bits (157), Expect = 4e-09, Method: Composition-based stats.
Identities = 25/86 (29%), Positives = 42/86 (48%), Gaps = 1/86 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ ++ I KN ++ V + ++ + +L+ V +RGFGSF V+KRA +
Sbjct: 1 MTKADIVNEI-TKNTGIDKVTVLTTLEAFMDTVKDSLSKEENVYLRGFGSFVVKKRAQKT 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNL 86
AR I + E +P F+ K
Sbjct: 60 ARNISKNTTIIIPEHNIPAFKPAKTF 85
>gi|325854393|ref|ZP_08171592.1| DNA-binding protein HU [Prevotella denticola CRIS 18C-A]
gi|325484187|gb|EGC87121.1| DNA-binding protein HU [Prevotella denticola CRIS 18C-A]
Length = 97
Score = 64.8 bits (157), Expect = 4e-09, Method: Composition-based stats.
Identities = 25/90 (27%), Positives = 43/90 (47%), Gaps = 1/90 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M I +A + + +K+V ++E M ++ G V I GFG+F V+KR R+
Sbjct: 1 MNNKEFIAELALRT-GYTQDESQKMVRTVIEMMGKSFETGEPVSISGFGTFEVKKRLERV 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
P + V K+V F+ N+K ++
Sbjct: 60 MVNPSTGLRMLVPPKLVLNFKPAANIKGQV 89
>gi|288926928|ref|ZP_06420826.1| DNA-binding protein HU-beta [Prevotella buccae D17]
gi|315607055|ref|ZP_07882059.1| DNA-binding protein HU-beta [Prevotella buccae ATCC 33574]
gi|288336287|gb|EFC74670.1| DNA-binding protein HU-beta [Prevotella buccae D17]
gi|315251109|gb|EFU31094.1| DNA-binding protein HU-beta [Prevotella buccae ATCC 33574]
Length = 91
Score = 64.8 bits (157), Expect = 4e-09, Method: Composition-based stats.
Identities = 30/92 (32%), Positives = 50/92 (54%), Gaps = 1/92 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI IA +L+ D +K ++ + + AL G ++++ GFG+F+V +R AR
Sbjct: 1 MNKSELIEKIAA-TAELSKADAKKALDATVNAIKDALVAGDKIQLVGFGTFAVSERPARE 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
P ++ I + K V F+AG L + +N
Sbjct: 60 GINPATKQKIKIAAKKVAKFKAGAELSDAVNK 91
>gi|302524989|ref|ZP_07277331.1| histone family protein DNA-binding protein [Streptomyces sp. AA4]
gi|302433884|gb|EFL05700.1| histone family protein DNA-binding protein [Streptomyces sp. AA4]
Length = 178
Score = 64.8 bits (157), Expect = 4e-09, Method: Composition-based stats.
Identities = 28/94 (29%), Positives = 49/94 (52%), Gaps = 2/94 (2%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ LI ++++ + + V+ L++ + + + G +V I GFG F R RAAR A
Sbjct: 3 NKAQLIEALSERLGD--KKVASEAVDGLVDIIIRTVNKGEKVNITGFGVFEKRARAARTA 60
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDS 95
R P + + V++ VP FRAG K+ ++
Sbjct: 61 RNPRTGEAVRVKKTNVPAFRAGTTFKDVISGSKK 94
>gi|237752734|ref|ZP_04583214.1| conserved hypothetical protein [Helicobacter winghamensis ATCC
BAA-430]
gi|229376223|gb|EEO26314.1| conserved hypothetical protein [Helicobacter winghamensis ATCC
BAA-430]
Length = 98
Score = 64.8 bits (157), Expect = 4e-09, Method: Composition-based stats.
Identities = 24/86 (27%), Positives = 38/86 (44%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS + + + +D EK + + +ALA +E+ GFG F + +
Sbjct: 1 MNKSEFVDLVKEVGEFETKKDAEKAIGAFTAAVEKALAKKESIELVGFGKFETVLQKGKE 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNL 86
P K ++K VP F+AGK L
Sbjct: 61 GTVPGTTKKYKTQDKFVPKFKAGKGL 86
>gi|319956219|ref|YP_004167482.1| histone family protein DNA-binding protein [Nitratifractor
salsuginis DSM 16511]
gi|319418623|gb|ADV45733.1| histone family protein DNA-binding protein [Nitratifractor
salsuginis DSM 16511]
Length = 92
Score = 64.8 bits (157), Expect = 4e-09, Method: Composition-based stats.
Identities = 21/90 (23%), Positives = 40/90 (44%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ + + +K + EK + E + +AL V + GFG+FS + +
Sbjct: 1 MTKAEFVELVQEKGGYESKAAAEKAIKAFTEAIEEALKRKETVTLVGFGTFSTVEVPEKS 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
+ P K + P F+ GK++K+ +
Sbjct: 61 GKVPGTDKTYTKPAHTAPKFKFGKSIKDAV 90
>gi|304382433|ref|ZP_07364932.1| DNA-binding protein HU-beta [Prevotella marshii DSM 16973]
gi|304336441|gb|EFM02678.1| DNA-binding protein HU-beta [Prevotella marshii DSM 16973]
Length = 90
Score = 64.8 bits (157), Expect = 4e-09, Method: Composition-based stats.
Identities = 22/66 (33%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI IA L D K ++ ++ + AL G ++ + GFG+FSV +R AR
Sbjct: 1 MNKTELIDQIAN-GSGLTKVDARKALDATVKAIKDALVAGDKIALIGFGTFSVNERPARE 59
Query: 61 ARAPLA 66
P
Sbjct: 60 GINPAT 65
>gi|240047359|ref|YP_002960747.1| nucleoid DNA-binding protein [Mycoplasma conjunctivae HRC/581]
gi|239984931|emb|CAT04924.1| Bacterial nucleoid DNA-binding protein [Mycoplasma conjunctivae]
Length = 90
Score = 64.8 bits (157), Expect = 4e-09, Method: Composition-based stats.
Identities = 27/90 (30%), Positives = 46/90 (51%), Gaps = 1/90 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K LI I+ K +++ ++VE I++ EE+ + ++ I FG+F + A +
Sbjct: 1 MNKKELIEIISAKT-EMSQKNVEIILSSFFEEVAHVMKKQDKLVINSFGTFQGIYKEASV 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
+ PL + I K V F+ KNLKE +
Sbjct: 60 SINPLTKSEIRTPAKTVAKFKPSKNLKEFV 89
>gi|300783623|ref|YP_003763914.1| DNA-binding protein HU-beta [Amycolatopsis mediterranei U32]
gi|299793137|gb|ADJ43512.1| DNA-binding protein HU-beta [Amycolatopsis mediterranei U32]
Length = 225
Score = 64.8 bits (157), Expect = 4e-09, Method: Composition-based stats.
Identities = 28/89 (31%), Positives = 49/89 (55%), Gaps = 1/89 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ LI ++++ + + + V+ L++ + + + G +V I GFG F R RAAR A
Sbjct: 3 NKAQLIEALSERLGD-DKKVAAQAVDGLVDIIIRTVNKGEKVNITGFGVFEKRARAARTA 61
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P + + V++ VP FRAG K+ +
Sbjct: 62 RNPRTGEAVKVKKTNVPAFRAGTTFKDVI 90
>gi|194246520|ref|YP_002004159.1| Bacterial nucleoid DNA-binding protein [Candidatus Phytoplasma
mali]
gi|193806877|emb|CAP18306.1| Bacterial nucleoid DNA-binding protein [Candidatus Phytoplasma
mali]
Length = 96
Score = 64.8 bits (157), Expect = 4e-09, Method: Composition-based stats.
Identities = 23/88 (26%), Positives = 47/88 (53%), Gaps = 1/88 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K I ++ K + ++ +KI+N +++ + L ++ I GFG+F V+ R+ R
Sbjct: 1 MNKIEFIKQLSDKL-ETTEKEGKKIINAVIDVIRINLLQNEKILITGFGTFCVKTRSERE 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKE 88
+ P +++I + K +P F+ K K+
Sbjct: 60 GKHPKTREIIKIPAKKIPSFKMSKRFKD 87
>gi|29346909|ref|NP_810412.1| DNA-binding protein HU [Bacteroides thetaiotaomicron VPI-5482]
gi|253572374|ref|ZP_04849777.1| DNA-binding protein HU [Bacteroides sp. 1_1_6]
gi|298386444|ref|ZP_06996000.1| DNA-binding protein HU [Bacteroides sp. 1_1_14]
gi|29338807|gb|AAO76606.1| DNA-binding protein HU [Bacteroides thetaiotaomicron VPI-5482]
gi|251838149|gb|EES66237.1| DNA-binding protein HU [Bacteroides sp. 1_1_6]
gi|298260821|gb|EFI03689.1| DNA-binding protein HU [Bacteroides sp. 1_1_14]
Length = 91
Score = 64.8 bits (157), Expect = 4e-09, Method: Composition-based stats.
Identities = 28/86 (32%), Positives = 43/86 (50%), Gaps = 1/86 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ ++ I KK ++ V V +E + +L+N V +RGFGSF V+KRA +
Sbjct: 1 MTKADIVNEITKKT-GIDKTTVLTTVEAFMEAVKDSLSNDENVYLRGFGSFVVKKRAQKT 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNL 86
AR I + E +P F+ K
Sbjct: 60 ARNISKNTTIIIPEHNIPAFKPAKTF 85
>gi|29346322|ref|NP_809825.1| DNA-binding protein HU [Bacteroides thetaiotaomicron VPI-5482]
gi|253568257|ref|ZP_04845668.1| DNA-binding protein HU [Bacteroides sp. 1_1_6]
gi|298385676|ref|ZP_06995234.1| HimA protein [Bacteroides sp. 1_1_14]
gi|29338217|gb|AAO76019.1| DNA-binding protein HU [Bacteroides thetaiotaomicron VPI-5482]
gi|251842330|gb|EES70410.1| DNA-binding protein HU [Bacteroides sp. 1_1_6]
gi|298261817|gb|EFI04683.1| HimA protein [Bacteroides sp. 1_1_14]
Length = 90
Score = 64.4 bits (156), Expect = 4e-09, Method: Composition-based stats.
Identities = 27/89 (30%), Positives = 49/89 (55%), Gaps = 1/89 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M +A + +D ++++ LL +MTQ L +G + I+GFGSF V+K+A R+
Sbjct: 1 MNNKEFTSELADRL-GYTIKDTSELISSLLSDMTQELEDGNAIAIQGFGSFEVKKKAERI 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKER 89
+ P ++ + V K+V +R LK++
Sbjct: 60 SINPSTKQRMLVPPKLVLTYRPSNTLKDK 88
>gi|332884204|gb|EGK04472.1| hypothetical protein HMPREF9456_00799 [Dysgonomonas mossii DSM
22836]
Length = 96
Score = 64.4 bits (156), Expect = 4e-09, Method: Composition-based stats.
Identities = 24/94 (25%), Positives = 45/94 (47%), Gaps = 1/94 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M LI +AK+ + +++ + + L V I+GFG F +K+A R+
Sbjct: 1 MTNQELIAALAKRLS-WTQRQTSEVLEATVSIINSNLEENNSVNIQGFGLFETKKKAERI 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSPD 94
+ P++++ V K+ FR G+ +KE L +
Sbjct: 60 SVNPVSKQRFLVPPKITLSFRPGQTIKENLKKLE 93
>gi|150005790|ref|YP_001300534.1| DNA-binding protein HU [Bacteroides vulgatus ATCC 8482]
gi|254882028|ref|ZP_05254738.1| DNA-binding protein HU [Bacteroides sp. 4_3_47FAA]
gi|294776169|ref|ZP_06741658.1| DNA-binding protein HU [Bacteroides vulgatus PC510]
gi|319640964|ref|ZP_07995672.1| DNA-binding protein HU [Bacteroides sp. 3_1_40A]
gi|149934214|gb|ABR40912.1| DNA-binding protein HU [Bacteroides vulgatus ATCC 8482]
gi|254834821|gb|EET15130.1| DNA-binding protein HU [Bacteroides sp. 4_3_47FAA]
gi|294449992|gb|EFG18503.1| DNA-binding protein HU [Bacteroides vulgatus PC510]
gi|317387409|gb|EFV68280.1| DNA-binding protein HU [Bacteroides sp. 3_1_40A]
Length = 90
Score = 64.4 bits (156), Expect = 4e-09, Method: Composition-based stats.
Identities = 25/89 (28%), Positives = 49/89 (55%), Gaps = 1/89 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M I +++K +D ++V+ ++ MTQ L +G + I+GFG+F V+K+ R+
Sbjct: 1 MNNKEFISELSRKL-GYTNKDTSQLVSSVIGVMTQELQDGNNIAIQGFGTFEVKKKLERI 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKER 89
+ P Q+ + + K+V ++ LKE+
Sbjct: 60 SINPATQQRMLIPPKLVLTYKPSVTLKEK 88
>gi|302524984|ref|ZP_07277326.1| hypothetical protein SSMG_01366 [Streptomyces sp. AA4]
gi|302433879|gb|EFL05695.1| hypothetical protein SSMG_01366 [Streptomyces sp. AA4]
Length = 207
Score = 64.4 bits (156), Expect = 5e-09, Method: Composition-based stats.
Identities = 28/89 (31%), Positives = 48/89 (53%), Gaps = 2/89 (2%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ LI ++++ + + V+ L++ + + + G +V I GFG F R RAAR A
Sbjct: 3 NKAQLIEALSERIGD--KKAAAEAVDGLVDIIIRTVHKGEKVTITGFGVFEKRARAARTA 60
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P + + V++ VP FRAG K+ +
Sbjct: 61 RNPRTGEAVRVKKTNVPAFRAGTTFKDVI 89
>gi|237750349|ref|ZP_04580829.1| conserved hypothetical protein [Helicobacter bilis ATCC 43879]
gi|229373879|gb|EEO24270.1| conserved hypothetical protein [Helicobacter bilis ATCC 43879]
Length = 97
Score = 64.4 bits (156), Expect = 5e-09, Method: Composition-based stats.
Identities = 27/90 (30%), Positives = 45/90 (50%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS + TI + +D EK ++ +++ +T L + VE+ GFG F + +
Sbjct: 1 MKKSDFVKTIKEIGGYAKKEDAEKALDSVVDAITHVLKSNDTVELVGFGKFENAVQKGKE 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
+ P K +KMVP F+ GK LK+ +
Sbjct: 61 GKVPGTDKTYKTADKMVPKFKPGKALKDEV 90
>gi|253578052|ref|ZP_04855324.1| predicted protein [Ruminococcus sp. 5_1_39B_FAA]
gi|251850370|gb|EES78328.1| predicted protein [Ruminococcus sp. 5_1_39BFAA]
Length = 97
Score = 64.4 bits (156), Expect = 5e-09, Method: Composition-based stats.
Identities = 15/90 (16%), Positives = 37/90 (41%), Gaps = 1/90 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M +S +I ++ +Y+ V+ ++ +++ L G+V ++ FG F +R A
Sbjct: 1 MTRSEMIRRYSE-IQCCSYEMAADAVDTVVTLISEGLEQDGKVSLKYFGRFEIRPFKAHR 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
+ I + F + ++ +
Sbjct: 60 GYDFSKGESIEIPAHNTIRFTPCEAWRKEV 89
>gi|226943962|ref|YP_002799035.1| histone-like DNA-binding protein [Azotobacter vinelandii DJ]
gi|226718889|gb|ACO78060.1| histone-like bacterial DNA-binding protein [Azotobacter
vinelandii DJ]
Length = 55
Score = 64.4 bits (156), Expect = 5e-09, Method: Composition-based stats.
Identities = 23/55 (41%), Positives = 34/55 (61%)
Query: 37 LANGGRVEIRGFGSFSVRKRAARLARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
+ G V + GFG+F+V++RAAR R P + + + VP F+AGK LKE +N
Sbjct: 1 MKAGREVSLVGFGAFTVKERAARTGRNPSTGQELEIRAARVPGFKAGKGLKEAVN 55
>gi|326408797|gb|ADZ65862.1| Integration host factor, alpha subunit [Brucella melitensis M28]
gi|326538516|gb|ADZ86731.1| integration host factor, alpha subunit [Brucella melitensis
M5-90]
Length = 79
Score = 64.4 bits (156), Expect = 5e-09, Method: Composition-based stats.
Identities = 21/66 (31%), Positives = 38/66 (57%)
Query: 25 IVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLARAPLAQKVISVEEKMVPFFRAGK 84
+V M+L+E+ A+ NG V++ F +F VR + R+ R P + + + + V F+A
Sbjct: 1 MVEMILDEVCDAIVNGETVKLSSFATFQVRDKNERIGRNPKTGEEVPILPRRVMTFKASN 60
Query: 85 NLKERL 90
LK+R+
Sbjct: 61 VLKQRI 66
>gi|237744441|ref|ZP_04574922.1| DNA-binding protein HU [Fusobacterium sp. 7_1]
gi|256027212|ref|ZP_05441046.1| DNA-binding protein HU [Fusobacterium sp. D11]
gi|260494006|ref|ZP_05814137.1| integration host factor, beta subunit [Fusobacterium sp. 3_1_33]
gi|289765189|ref|ZP_06524567.1| DNA-binding protein HU [Fusobacterium sp. D11]
gi|229431670|gb|EEO41882.1| DNA-binding protein HU [Fusobacterium sp. 7_1]
gi|260198152|gb|EEW95668.1| integration host factor, beta subunit [Fusobacterium sp. 3_1_33]
gi|289716744|gb|EFD80756.1| DNA-binding protein HU [Fusobacterium sp. D11]
Length = 102
Score = 64.4 bits (156), Expect = 5e-09, Method: Composition-based stats.
Identities = 26/70 (37%), Positives = 39/70 (55%), Gaps = 1/70 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K + A+K +L +D E++VN LE + AL G V GFGS+ V++R+AR
Sbjct: 1 MTKKEFVNAFAEK-GELKIKDSERLVNAFLETIEDALLKGDGVRFIGFGSWEVKERSARE 59
Query: 61 ARAPLAQKVI 70
+ P K+I
Sbjct: 60 VKNPQTGKMI 69
>gi|330814088|ref|YP_004358327.1| integration host factor alpha subunit [Candidatus Pelagibacter
sp. IMCC9063]
gi|327487183|gb|AEA81588.1| integration host factor alpha subunit [Candidatus Pelagibacter
sp. IMCC9063]
Length = 100
Score = 64.4 bits (156), Expect = 5e-09, Method: Composition-based stats.
Identities = 20/91 (21%), Positives = 45/91 (49%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
+ + L + ++ L+ V+ L + + L +V+I FG+FS + + +R+
Sbjct: 7 ITRQKLYDLVFQEL-GLSKISCSAFVDTLFDSLIANLKKDKKVKIALFGTFSKKNKKSRV 65
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P ++ ++ + V F+A K L +++N
Sbjct: 66 GRNPKTKEEKTISSRNVVTFKASKLLIKKIN 96
>gi|313203644|ref|YP_004042301.1| histone family protein DNA-binding protein [Paludibacter
propionicigenes WB4]
gi|312442960|gb|ADQ79316.1| histone family protein DNA-binding protein [Paludibacter
propionicigenes WB4]
Length = 494
Score = 64.4 bits (156), Expect = 5e-09, Method: Composition-based stats.
Identities = 20/98 (20%), Positives = 46/98 (46%), Gaps = 6/98 (6%)
Query: 1 MIK-----SSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRK 55
MIK +I ++ K +++ + E + +++ + ++L +G V+I+ FG+F ++
Sbjct: 1 MIKDKISSQEVIDLVSSK-AQVSKRVSEDFLKVMISTIEESLLSGDVVKIKNFGTFKLQW 59
Query: 56 RAARLARAPLAQKVISVEEKMVPFFRAGKNLKERLNSP 93
R + + + I + F LK+ +N P
Sbjct: 60 NEPRKSVNVHSGEDILLAGYYKVTFTPDVVLKDLVNEP 97
>gi|261880407|ref|ZP_06006834.1| DNA-binding protein HU [Prevotella bergensis DSM 17361]
gi|270332952|gb|EFA43738.1| DNA-binding protein HU [Prevotella bergensis DSM 17361]
Length = 93
Score = 64.4 bits (156), Expect = 5e-09, Method: Composition-based stats.
Identities = 27/94 (28%), Positives = 46/94 (48%), Gaps = 2/94 (2%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQA-LANGGRVEIRGFGSFSVRKRAAR 59
M K+ +I IA++ L ++V ++ +E + + L V +RGFGSF V++RAA+
Sbjct: 1 MTKADIISEIAEQT-GLQKKEVSVVIECFMETVKRNMLEKKENVYLRGFGSFIVKRRAAK 59
Query: 60 LARAPLAQKVISVEEKMVPFFRAGKNLKERLNSP 93
AR I++ P F+ K E +
Sbjct: 60 TARDIGKNTTITIPAHDFPSFKPAKAFVEEMKGE 93
>gi|237725389|ref|ZP_04555870.1| DNA-binding protein HU [Bacteroides sp. D4]
gi|265753597|ref|ZP_06088952.1| DNA-binding protein HU [Bacteroides sp. 3_1_33FAA]
gi|229436076|gb|EEO46153.1| DNA-binding protein HU [Bacteroides dorei 5_1_36/D4]
gi|263235311|gb|EEZ20835.1| DNA-binding protein HU [Bacteroides sp. 3_1_33FAA]
Length = 90
Score = 64.4 bits (156), Expect = 5e-09, Method: Composition-based stats.
Identities = 25/89 (28%), Positives = 49/89 (55%), Gaps = 1/89 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M I +++K +D ++V+ ++ MTQ L +G + I+GFG+F V+K+ R+
Sbjct: 1 MNNKEFISELSRKL-GYTNKDTSQLVSSVIGVMTQELQDGNNIVIQGFGTFEVKKKLERI 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKER 89
+ P Q+ + + K+V ++ LKE+
Sbjct: 60 SINPATQQRMLIPPKLVLTYKPSVTLKEK 88
>gi|329296189|ref|ZP_08253525.1| integration host factor subunit alpha [Plautia stali symbiont]
Length = 77
Score = 64.4 bits (156), Expect = 5e-09, Method: Composition-based stats.
Identities = 21/73 (28%), Positives = 39/73 (53%), Gaps = 1/73 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ + + +K L+ +D +++V EE+ +AL NG +V++ GFG+F +R + R
Sbjct: 4 TKAEMSEYLFEKL-GLSKRDAKELVEFFFEEVRRALENGEQVKLSGFGNFDLRDKNQRPG 62
Query: 62 RAPLAQKVISVEE 74
R P K+
Sbjct: 63 RNPKTGKIFQSPP 75
>gi|300783634|ref|YP_003763925.1| DNA-binding protein HU-beta [Amycolatopsis mediterranei U32]
gi|299793148|gb|ADJ43523.1| DNA-binding protein HU-beta [Amycolatopsis mediterranei U32]
Length = 225
Score = 64.4 bits (156), Expect = 5e-09, Method: Composition-based stats.
Identities = 28/89 (31%), Positives = 48/89 (53%), Gaps = 2/89 (2%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ LI ++++ + + V+ L++ + + + G +V I GFG F R RAAR A
Sbjct: 3 NKAQLIEALSERLGD--KKVASQAVDGLVDIIIRTVNKGEKVNITGFGVFEKRARAARTA 60
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P + + V++ VP FRAG K+ +
Sbjct: 61 RNPRTGEAVRVKKTNVPAFRAGTTFKDVI 89
>gi|119383159|ref|YP_914215.1| histone family protein DNA-binding protein [Paracoccus
denitrificans PD1222]
gi|119372926|gb|ABL68519.1| histone family protein DNA-binding protein [Paracoccus
denitrificans PD1222]
Length = 99
Score = 64.4 bits (156), Expect = 5e-09, Method: Composition-based stats.
Identities = 22/92 (23%), Positives = 44/92 (47%), Gaps = 1/92 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ L+ T+A + + + ++ L +++ +A GG + + G G + R R R
Sbjct: 9 MTKTQLVATLADEM-GSDKKTAAAALDALSAVVSRTVAEGGALTLPGIGKVACRTRPERQ 67
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P Q++++ V K LK+ +N+
Sbjct: 68 VRNPQTQEMMTKPADKVVKVTIAKALKDSVNA 99
>gi|296114622|ref|ZP_06833275.1| histone family protein DNA-binding protein [Gluconacetobacter
hansenii ATCC 23769]
gi|295978978|gb|EFG85703.1| histone family protein DNA-binding protein [Gluconacetobacter
hansenii ATCC 23769]
Length = 89
Score = 64.4 bits (156), Expect = 5e-09, Method: Composition-based stats.
Identities = 22/90 (24%), Positives = 41/90 (45%), Gaps = 1/90 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ I + + + + + L+E + + L G + FG+F+V+K AR
Sbjct: 1 MSKA-FIAAVIQDSIDCTGVAANQAASDLMEAIIKELKREGGFTLPSFGTFTVKKTKARK 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
A P + + V+ F+A NLK+ +
Sbjct: 60 ALNPRTGEPVKVKAGKTVRFKASPNLKKAV 89
>gi|3228564|gb|AAD03319.1| histone-like protein HLm [Listeria monocytogenes]
Length = 83
Score = 64.4 bits (156), Expect = 5e-09, Method: Composition-based stats.
Identities = 26/90 (28%), Positives = 45/90 (50%), Gaps = 9/90 (10%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ L+ ++A+ L+ + +++ L + + GFG+F VR+RAAR
Sbjct: 3 NKTDLVNSVAE-LADLSKK------TQRKQQLYSKLFK--LLHLLGFGNFEVRERAARKG 53
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P ++ I + VP F+ GK LKE +
Sbjct: 54 RNPATKEEIDIPASKVPAFKPGKALKEAVK 83
>gi|317503236|ref|ZP_07961294.1| DNA-binding protein HU [Prevotella salivae DSM 15606]
gi|315665649|gb|EFV05258.1| DNA-binding protein HU [Prevotella salivae DSM 15606]
Length = 92
Score = 64.4 bits (156), Expect = 5e-09, Method: Composition-based stats.
Identities = 28/93 (30%), Positives = 47/93 (50%), Gaps = 2/93 (2%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQAL-ANGGRVEIRGFGSFSVRKRAAR 59
M K+ +I IA + +DV +V +E + +L V +RGFGSF ++ RAA+
Sbjct: 1 MTKADIINEIAM-TTGVQKRDVAVVVESFMETIKNSLLEKKENVYLRGFGSFVIKHRAAK 59
Query: 60 LARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
AR L + +E +P F+ K+ E++
Sbjct: 60 TARNILKNTTMMIEAHDLPSFKPSKSFVEQMKK 92
>gi|291513675|emb|CBK62885.1| Bacterial nucleoid DNA-binding protein [Alistipes shahii WAL
8301]
Length = 89
Score = 64.4 bits (156), Expect = 6e-09, Method: Composition-based stats.
Identities = 26/86 (30%), Positives = 39/86 (45%), Gaps = 1/86 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K LI + K + N V I+ L+ + + + V +RGFG+F +KRA +
Sbjct: 1 MTKQDLITVVGSKTGQ-NDSHVRPIIEATLDAIKECVQRKEPVYLRGFGTFQPKKRAEKK 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNL 86
AR A I V V F+ K+
Sbjct: 60 ARNITAGTTIIVPAHEVAHFKPSKSF 85
>gi|255693886|ref|ZP_05417561.1| HimA protein [Bacteroides finegoldii DSM 17565]
gi|260620291|gb|EEX43162.1| HimA protein [Bacteroides finegoldii DSM 17565]
Length = 90
Score = 64.4 bits (156), Expect = 6e-09, Method: Composition-based stats.
Identities = 27/89 (30%), Positives = 49/89 (55%), Gaps = 1/89 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M +A++ +D +++N LL MTQ L G + ++GFGSF V+K+A R+
Sbjct: 1 MNNKEFTSELAERL-GYTIKDTSELINSLLASMTQELEEGNMIAVQGFGSFEVKKKAERI 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKER 89
+ P +++ + V K+V +R LK++
Sbjct: 60 SINPASKQRMLVPPKLVLSYRPSNTLKDK 88
>gi|160889023|ref|ZP_02070026.1| hypothetical protein BACUNI_01443 [Bacteroides uniformis ATCC
8492]
gi|270293860|ref|ZP_06200062.1| conserved hypothetical protein [Bacteroides sp. D20]
gi|317479304|ref|ZP_07938439.1| bacterial DNA-binding protein [Bacteroides sp. 4_1_36]
gi|156861490|gb|EDO54921.1| hypothetical protein BACUNI_01443 [Bacteroides uniformis ATCC
8492]
gi|270275327|gb|EFA21187.1| conserved hypothetical protein [Bacteroides sp. D20]
gi|316904592|gb|EFV26411.1| bacterial DNA-binding protein [Bacteroides sp. 4_1_36]
Length = 91
Score = 64.4 bits (156), Expect = 6e-09, Method: Composition-based stats.
Identities = 26/86 (30%), Positives = 42/86 (48%), Gaps = 1/86 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ ++ I KN ++ V V ++ + +L+ V +RGFGSF V+KRA +
Sbjct: 1 MTKADIVNEI-TKNTGIDKTTVLTTVEAFMDAVKASLSKDENVYLRGFGSFVVKKRAQKT 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNL 86
AR I + E +P F+ K
Sbjct: 60 ARNISKNTTIIIPEHNIPAFKPAKTF 85
>gi|218130464|ref|ZP_03459268.1| hypothetical protein BACEGG_02053 [Bacteroides eggerthii DSM
20697]
gi|317473947|ref|ZP_07933226.1| bacterial DNA-binding protein [Bacteroides eggerthii 1_2_48FAA]
gi|329954389|ref|ZP_08295481.1| DNA-binding protein HU [Bacteroides clarus YIT 12056]
gi|217987343|gb|EEC53673.1| hypothetical protein BACEGG_02053 [Bacteroides eggerthii DSM
20697]
gi|316909789|gb|EFV31464.1| bacterial DNA-binding protein [Bacteroides eggerthii 1_2_48FAA]
gi|328527657|gb|EGF54650.1| DNA-binding protein HU [Bacteroides clarus YIT 12056]
Length = 91
Score = 64.0 bits (155), Expect = 6e-09, Method: Composition-based stats.
Identities = 26/92 (28%), Positives = 43/92 (46%), Gaps = 1/92 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ ++ I KN ++ V V ++ + +L+ V +RGFGSF V+KRA +
Sbjct: 1 MTKADIVNEI-TKNTGIDKVTVLTTVEAFMDAVKASLSKDENVYLRGFGSFVVKKRAQKT 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
AR I + E +P F+ K +
Sbjct: 60 ARNISKNTTIIIPEHNIPAFKPAKTFTIAVKK 91
>gi|281421498|ref|ZP_06252497.1| DNA-binding protein HU-beta [Prevotella copri DSM 18205]
gi|281404570|gb|EFB35250.1| DNA-binding protein HU-beta [Prevotella copri DSM 18205]
Length = 91
Score = 64.0 bits (155), Expect = 6e-09, Method: Composition-based stats.
Identities = 26/92 (28%), Positives = 46/92 (50%), Gaps = 1/92 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI IA ++ + + + +AL G ++++ GFG+FS+ +R AR
Sbjct: 1 MNKTELIDKIAA-GAEITKAQAKAALEATTNALKEALIAGDKIQLVGFGTFSINERPARE 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
P ++ I + K V F+AG L + +N
Sbjct: 60 GINPATKEKIQIAAKKVAKFKAGAELADAINK 91
>gi|116620138|ref|YP_822294.1| histone family protein DNA-binding protein [Candidatus Solibacter
usitatus Ellin6076]
gi|116223300|gb|ABJ82009.1| histone family protein DNA-binding protein [Candidatus Solibacter
usitatus Ellin6076]
Length = 100
Score = 64.0 bits (155), Expect = 6e-09, Method: Composition-based stats.
Identities = 21/95 (22%), Positives = 40/95 (42%), Gaps = 1/95 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
++ L+ +A+K ++N + +++ L + G + G G R AR+
Sbjct: 7 TQTQLVRQLAEK-AEVNNKVARALLDNLAATAISEVKKNGVFVLPGIGRLVRVDRKARMG 65
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDST 96
R P + I + K V FR K+ K+ + P
Sbjct: 66 RNPATGEAIKIAAKKVVKFRVAKSAKDAIVPPKKK 100
>gi|329960937|ref|ZP_08299216.1| DNA-binding protein HU [Bacteroides fluxus YIT 12057]
gi|328532223|gb|EGF59027.1| DNA-binding protein HU [Bacteroides fluxus YIT 12057]
Length = 91
Score = 64.0 bits (155), Expect = 6e-09, Method: Composition-based stats.
Identities = 26/86 (30%), Positives = 42/86 (48%), Gaps = 1/86 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ ++ I KN ++ V V ++ + +L+ V +RGFGSF V+KRA +
Sbjct: 1 MTKADIVNEI-TKNTGIDKVTVLTTVEAFMDAVKASLSKDENVYLRGFGSFVVKKRAQKT 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNL 86
AR I + E +P F+ K
Sbjct: 60 ARNISKNTTIIIPEHNIPAFKPAKTF 85
>gi|291612681|ref|YP_003522838.1| histone family protein DNA-binding protein [Sideroxydans
lithotrophicus ES-1]
gi|291582793|gb|ADE10451.1| histone family protein DNA-binding protein [Sideroxydans
lithotrophicus ES-1]
Length = 93
Score = 64.0 bits (155), Expect = 6e-09, Method: Composition-based stats.
Identities = 27/92 (29%), Positives = 43/92 (46%), Gaps = 2/92 (2%)
Query: 1 MIKSSLIGTIAKKNP--KLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAA 58
M ++ LI IA P + V+ +++ L + + L G V + G G +V+K AA
Sbjct: 1 MNQAELINAIAANAPNNSTSKTTVKAVLDELAKVASAELKAGNEVTLPGLGKLTVKKSAA 60
Query: 59 RLARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R R P + + K P F A K LK+ +
Sbjct: 61 RKGRNPATGAEMDIPAKTKPHFSAAKALKDAV 92
>gi|58584918|ref|YP_198491.1| nucleoid DNA-binding protein [Wolbachia endosymbiont strain TRS of
Brugia malayi]
gi|58419234|gb|AAW71249.1| Bacterial nucleoid DNA-binding protein, HupA family [Wolbachia
endosymbiont strain TRS of Brugia malayi]
Length = 102
Score = 64.0 bits (155), Expect = 7e-09, Method: Composition-based stats.
Identities = 23/91 (25%), Positives = 48/91 (52%), Gaps = 1/91 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+++ I + L+ +D I++ +L+E+ +L G V+I FG+F ++K+ R
Sbjct: 12 TKATIAEDI-NQEIGLSKEDSAAIIDDILDEIKASLVKDGIVKISSFGTFLIKKKKERPG 70
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
P K + ++ + FR K +K+ +N+
Sbjct: 71 NVPNTSKKVVIQARNSVSFRPSKVIKKLINN 101
>gi|33152542|ref|NP_873895.1| integration host factor, alpha chain [Haemophilus ducreyi
35000HP]
gi|71152153|sp|Q7VLG4|IHFA_HAEDU RecName: Full=Integration host factor subunit alpha;
Short=IHF-alpha
gi|33148766|gb|AAP96284.1| integration host factor, alpha chain [Haemophilus ducreyi
35000HP]
Length = 98
Score = 64.0 bits (155), Expect = 7e-09, Method: Composition-based stats.
Identities = 28/95 (29%), Positives = 48/95 (50%), Gaps = 1/95 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K ++ K + ++ V EE+ ALANG V++ GFG+FS+RK+ AR
Sbjct: 4 TKVEFTASLISKY-GFDKSVAKQFVEQFFEEIRVALANGQEVKLSGFGNFSLRKKNARPG 62
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDST 96
R P + ++V + V F+ G+ +ER+ +
Sbjct: 63 RNPKTGESVAVSARRVVVFKPGQKFRERVENVKVK 97
>gi|78224249|ref|YP_385996.1| histone-like DNA-binding protein [Geobacter metallireducens
GS-15]
gi|78195504|gb|ABB33271.1| Histone-like DNA-binding protein [Geobacter metallireducens
GS-15]
Length = 70
Score = 64.0 bits (155), Expect = 7e-09, Method: Composition-based stats.
Identities = 21/69 (30%), Positives = 40/69 (57%)
Query: 25 IVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLARAPLAQKVISVEEKMVPFFRAGK 84
+V +LLE++ + L R++I GFG+F V+++A R R P + ++++ + V F+
Sbjct: 1 MVEVLLEQIKKTLEREDRIKITGFGNFEVKRKADRRGRNPQTGEALTIQSRRVLTFKPSA 60
Query: 85 NLKERLNSP 93
LK +N
Sbjct: 61 VLKNSINGE 69
>gi|254884846|ref|ZP_05257556.1| DNA-binding protein HU [Bacteroides sp. 4_3_47FAA]
gi|254837639|gb|EET17948.1| DNA-binding protein HU [Bacteroides sp. 4_3_47FAA]
Length = 94
Score = 64.0 bits (155), Expect = 7e-09, Method: Composition-based stats.
Identities = 25/90 (27%), Positives = 42/90 (46%), Gaps = 1/90 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ L I + + Q V IV L+ + +L V +RGFGSF +++RA +
Sbjct: 1 MTKAELCKKITDQT-GCDMQTVSAIVESLMVSIKGSLEKEENVYLRGFGSFIIKRRAEKT 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
AR I + +P F++ K + +
Sbjct: 60 ARNISKNTTIIIPAHNIPAFKSAKEFTDLV 89
>gi|189466527|ref|ZP_03015312.1| hypothetical protein BACINT_02902 [Bacteroides intestinalis DSM
17393]
gi|224540249|ref|ZP_03680788.1| hypothetical protein BACCELL_05162 [Bacteroides cellulosilyticus
DSM 14838]
gi|189434791|gb|EDV03776.1| hypothetical protein BACINT_02902 [Bacteroides intestinalis DSM
17393]
gi|224518128|gb|EEF87233.1| hypothetical protein BACCELL_05162 [Bacteroides cellulosilyticus
DSM 14838]
Length = 91
Score = 64.0 bits (155), Expect = 7e-09, Method: Composition-based stats.
Identities = 26/86 (30%), Positives = 42/86 (48%), Gaps = 1/86 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ ++ I KN ++ V V ++ + +L+ V +RGFGSF V+KRA +
Sbjct: 1 MTKADIVNEI-TKNTGIDKVTVLTTVEAFMDTVKASLSKDENVYLRGFGSFVVKKRAQKT 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNL 86
AR I + E +P F+ K
Sbjct: 60 ARNISKNTTIIIPEHNIPAFKPAKTF 85
>gi|317504625|ref|ZP_07962592.1| DNA-binding protein HU-beta [Prevotella salivae DSM 15606]
gi|315664246|gb|EFV03946.1| DNA-binding protein HU-beta [Prevotella salivae DSM 15606]
Length = 91
Score = 63.6 bits (154), Expect = 7e-09, Method: Composition-based stats.
Identities = 21/64 (32%), Positives = 35/64 (54%), Gaps = 1/64 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI IA L+ + +K ++ + +AL G ++++ GFG+FSV +R AR
Sbjct: 1 MNKTELIDKIAA-GAGLSKAEAKKALDATTAAIKEALVKGDKIQLVGFGTFSVNERPARE 59
Query: 61 ARAP 64
P
Sbjct: 60 GINP 63
>gi|300783647|ref|YP_003763938.1| DNA-binding protein HU-beta [Amycolatopsis mediterranei U32]
gi|299793161|gb|ADJ43536.1| DNA-binding protein HU-beta [Amycolatopsis mediterranei U32]
Length = 261
Score = 63.6 bits (154), Expect = 8e-09, Method: Composition-based stats.
Identities = 28/89 (31%), Positives = 47/89 (52%), Gaps = 2/89 (2%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ LI + ++ + + V+ L++ + + + G +V I GFG F R RAAR A
Sbjct: 3 NKAQLIEALTERLGD--KKAASEAVDGLVDIIIRTVNKGEKVNITGFGVFEKRARAARTA 60
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P + + V++ VP FRAG K+ +
Sbjct: 61 RNPRTGEAVRVKKTNVPAFRAGTTFKDVI 89
>gi|260170244|ref|ZP_05756656.1| DNA-binding protein HU [Bacteroides sp. D2]
Length = 90
Score = 63.6 bits (154), Expect = 8e-09, Method: Composition-based stats.
Identities = 29/89 (32%), Positives = 49/89 (55%), Gaps = 1/89 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M +A++ +D +++N LL MTQ L G V I+GFGSF V+K+A R+
Sbjct: 1 MNNKEFTSELAERL-GYTIKDTSELMNSLLSSMTQELEEGNVVAIQGFGSFEVKKKAERI 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKER 89
+ P +++ + V K+V +R LK++
Sbjct: 60 SINPASKQRMLVPPKLVLSYRPSNTLKDK 88
>gi|327313608|ref|YP_004329045.1| DNA-binding protein HU [Prevotella denticola F0289]
gi|326944716|gb|AEA20601.1| DNA-binding protein HU [Prevotella denticola F0289]
Length = 97
Score = 63.6 bits (154), Expect = 8e-09, Method: Composition-based stats.
Identities = 25/90 (27%), Positives = 42/90 (46%), Gaps = 1/90 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M I +A + + K+V ++E M ++ G V I GFG+F V+KR R+
Sbjct: 1 MNNKEFIAELALRT-GYTQDESLKMVRTVIEMMGKSFETGEPVSISGFGTFEVKKRLERV 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
P + V K+V F+ N+K ++
Sbjct: 60 MVNPSTGLRMLVPPKLVLNFKPAANIKGQV 89
>gi|281419890|ref|ZP_06250889.1| SPBc2 prophage-derived DNA-binding protein HU 2 [Prevotella copri
DSM 18205]
gi|281406017|gb|EFB36697.1| SPBc2 prophage-derived DNA-binding protein HU 2 [Prevotella copri
DSM 18205]
Length = 96
Score = 63.6 bits (154), Expect = 8e-09, Method: Composition-based stats.
Identities = 27/92 (29%), Positives = 46/92 (50%), Gaps = 1/92 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M I +A++ + +D +K+V ++ M +G V I FG+F V+KR R+
Sbjct: 1 MNNKEYIAELAQQT-GYSQEDTQKLVRKAIDAMIAEFEDGEAVSIPNFGTFEVKKRMERV 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
P +K V K+V FR ++KE+L +
Sbjct: 60 VVNPTTKKRQLVPPKLVLGFRPVASVKEKLKN 91
>gi|331695682|ref|YP_004331921.1| histone family protein DNA-binding protein [Pseudonocardia
dioxanivorans CB1190]
gi|326950371|gb|AEA24068.1| histone family protein DNA-binding protein [Pseudonocardia
dioxanivorans CB1190]
Length = 185
Score = 63.6 bits (154), Expect = 8e-09, Method: Composition-based stats.
Identities = 28/90 (31%), Positives = 44/90 (48%), Gaps = 2/90 (2%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ L+ +A + + V+ +L + + +GG V + GFG F R RAAR+
Sbjct: 1 MNKTQLVDALAARLGD--RRTAASAVDGVLSIIVDTVGSGGSVSLTGFGVFEARARAARV 58
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
AR P ++V +VP FR G K +
Sbjct: 59 ARNPRTGDTVAVPPTVVPSFRPGIAFKATV 88
>gi|315918607|ref|ZP_07914847.1| conserved hypothetical protein [Bacteroides sp. D2]
gi|313692482|gb|EFS29317.1| conserved hypothetical protein [Bacteroides sp. D2]
Length = 92
Score = 63.6 bits (154), Expect = 8e-09, Method: Composition-based stats.
Identities = 29/89 (32%), Positives = 49/89 (55%), Gaps = 1/89 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M +A++ +D +++N LL MTQ L G V I+GFGSF V+K+A R+
Sbjct: 3 MNNKEFTSELAERL-GYTIKDTSELMNSLLSSMTQELEEGNVVAIQGFGSFEVKKKAERI 61
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKER 89
+ P +++ + V K+V +R LK++
Sbjct: 62 SINPASKQRMLVPPKLVLSYRPSNTLKDK 90
>gi|124506647|ref|XP_001351921.1| bacterial histone-like protein [Plasmodium falciparum 3D7]
gi|23504948|emb|CAD51732.1| bacterial histone-like protein [Plasmodium falciparum 3D7]
gi|227300960|emb|CAR57919.1| plastid histone-like protein HU precursor [Plasmodium falciparum]
Length = 189
Score = 63.6 bits (154), Expect = 8e-09, Method: Composition-based stats.
Identities = 23/93 (24%), Positives = 44/93 (47%), Gaps = 1/93 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
+ K +I ++ + + N + VEKI+N + + + + L N ++ I FG F R R
Sbjct: 58 ITKKQIIEEVSMETKE-NKKTVEKIMNGIFDNIYKHLENNEKIYIHKFGMFYNIFRKKRC 116
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSP 93
+ ++ I +E +P F+ K KE +
Sbjct: 117 IKNLRTKEDIEIESSHMPHFKFSKVFKELIKQN 149
>gi|331703904|ref|YP_004400591.1| hypothetical protein MLC_8840 [Mycoplasma mycoides subsp. capri LC
str. 95010]
gi|328802459|emb|CBW54614.1| Hypothetical transmembrane protein, Predictedhistone like DNA
binding protein [Mycoplasma mycoides subsp. capri LC
str. 95010]
Length = 299
Score = 63.6 bits (154), Expect = 8e-09, Method: Composition-based stats.
Identities = 21/93 (22%), Positives = 43/93 (46%), Gaps = 2/93 (2%)
Query: 2 IKSSLIGTIAK--KNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAAR 59
K L+ + + + ++ ++ I + ++ L G V + FG F ++ A+
Sbjct: 207 TKGMLLDELYEDPEFIEMTKVSIKTIFDKAFIVASKNLVAGDHVVLAKFGKFETVEKEAQ 266
Query: 60 LARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
+ PL Q+ I V V F+ K++KE++N
Sbjct: 267 MKMNPLTQEQIEVPAHKVVKFKLSKSVKEKMNE 299
>gi|224024934|ref|ZP_03643300.1| hypothetical protein BACCOPRO_01665 [Bacteroides coprophilus DSM
18228]
gi|224018170|gb|EEF76168.1| hypothetical protein BACCOPRO_01665 [Bacteroides coprophilus DSM
18228]
Length = 95
Score = 63.6 bits (154), Expect = 9e-09, Method: Composition-based stats.
Identities = 21/96 (21%), Positives = 45/96 (46%), Gaps = 1/96 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M G ++++ +D +V L++ M Q L + + FG+F V+K+ R+
Sbjct: 1 MNSKEFTGELSRRL-GYTNKDAAVLVASLVDIMAQELQESNVLTFQEFGTFEVKKKMERI 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDST 96
P+ ++ + V K+ F+ LK ++ + D+
Sbjct: 60 VVNPVTRQRLLVPPKLSLTFKPCPALKGKVKNEDAQ 95
>gi|288926972|ref|ZP_06420868.1| DNA-binding protein HU [Prevotella buccae D17]
gi|315608920|ref|ZP_07883892.1| DNA-binding protein HU [Prevotella buccae ATCC 33574]
gi|288336255|gb|EFC74640.1| DNA-binding protein HU [Prevotella buccae D17]
gi|315249300|gb|EFU29317.1| DNA-binding protein HU [Prevotella buccae ATCC 33574]
Length = 97
Score = 63.6 bits (154), Expect = 9e-09, Method: Composition-based stats.
Identities = 29/92 (31%), Positives = 48/92 (52%), Gaps = 1/92 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M I +A+++ + K+V+ ++ EMT L V I GFGSF V+KR R+
Sbjct: 1 MNNKEYINELARRS-GYTQEVTRKLVHDVVAEMTDRLGESETVSIAGFGSFEVKKRLERI 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
P ++ + V K+V FR ++KE+L +
Sbjct: 60 LVNPSTKQRMLVPPKLVLSFRPVASVKEKLKN 91
>gi|319902742|ref|YP_004162470.1| histone family protein DNA-binding protein [Bacteroides
helcogenes P 36-108]
gi|319417773|gb|ADV44884.1| histone family protein DNA-binding protein [Bacteroides
helcogenes P 36-108]
Length = 91
Score = 63.6 bits (154), Expect = 9e-09, Method: Composition-based stats.
Identities = 27/86 (31%), Positives = 42/86 (48%), Gaps = 1/86 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ ++ I KN ++ V V +E + +L+ V +RGFGSF V+KRA +
Sbjct: 1 MTKADIVNEI-TKNTGIDKVTVLTTVEAFMEAVKASLSKDENVYLRGFGSFVVKKRAQKT 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNL 86
AR I + E +P F+ K
Sbjct: 60 ARNISKNTTIIIPEHNIPAFKPAKTF 85
>gi|269120171|ref|YP_003308348.1| histone family protein DNA-binding protein [Sebaldella termitidis
ATCC 33386]
gi|268614049|gb|ACZ08417.1| histone family protein DNA-binding protein [Sebaldella termitidis
ATCC 33386]
Length = 91
Score = 63.6 bits (154), Expect = 9e-09, Method: Composition-based stats.
Identities = 26/74 (35%), Positives = 37/74 (50%), Gaps = 1/74 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K I AK + + E++VN LE + + L G V+ G+G+F V+KRAAR
Sbjct: 1 MSKKEFIEAYAKSTGE-TKKRSEELVNAFLETVEKTLVKGNPVQFVGWGTFGVQKRAARK 59
Query: 61 ARAPLAQKVISVEE 74
R P K I +
Sbjct: 60 GRNPQTGKEIKIAA 73
>gi|254303147|ref|ZP_04970505.1| possible nucleoid DNA-binding protein [Fusobacterium nucleatum
subsp. polymorphum ATCC 10953]
gi|148323339|gb|EDK88589.1| possible nucleoid DNA-binding protein [Fusobacterium nucleatum
subsp. polymorphum ATCC 10953]
Length = 102
Score = 63.6 bits (154), Expect = 9e-09, Method: Composition-based stats.
Identities = 26/70 (37%), Positives = 39/70 (55%), Gaps = 1/70 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K + A+K +L +D E++VN LE + AL G V GFGS+ V++R+AR
Sbjct: 1 MTKKEFVNAFAEK-GELKIKDSERLVNAFLETVEDALLKGDGVRFIGFGSWEVKERSARE 59
Query: 61 ARAPLAQKVI 70
+ P K+I
Sbjct: 60 VKNPQTGKMI 69
>gi|160882775|ref|ZP_02063778.1| hypothetical protein BACOVA_00736 [Bacteroides ovatus ATCC 8483]
gi|293373985|ref|ZP_06620326.1| DNA-binding protein HU [Bacteroides ovatus SD CMC 3f]
gi|299145603|ref|ZP_07038671.1| HimA protein [Bacteroides sp. 3_1_23]
gi|156111799|gb|EDO13544.1| hypothetical protein BACOVA_00736 [Bacteroides ovatus ATCC 8483]
gi|292631061|gb|EFF49698.1| DNA-binding protein HU [Bacteroides ovatus SD CMC 3f]
gi|298516094|gb|EFI39975.1| HimA protein [Bacteroides sp. 3_1_23]
Length = 92
Score = 63.3 bits (153), Expect = 1e-08, Method: Composition-based stats.
Identities = 28/89 (31%), Positives = 49/89 (55%), Gaps = 1/89 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M +A++ +D +++N LL MTQ L G + I+GFGSF V+K+A R+
Sbjct: 3 MNNKEFTSELAERL-GYTIKDTSELMNSLLSSMTQELEEGNVIAIQGFGSFEVKKKAERI 61
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKER 89
+ P +++ + V K+V +R LK++
Sbjct: 62 SINPASKQRMLVPPKLVLSYRPSNTLKDK 90
>gi|257469717|ref|ZP_05633809.1| hypothetical protein FulcA4_10275 [Fusobacterium ulcerans ATCC
49185]
gi|317063949|ref|ZP_07928434.1| predicted protein [Fusobacterium ulcerans ATCC 49185]
gi|313689625|gb|EFS26460.1| predicted protein [Fusobacterium ulcerans ATCC 49185]
Length = 99
Score = 63.3 bits (153), Expect = 1e-08, Method: Composition-based stats.
Identities = 23/99 (23%), Positives = 47/99 (47%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M ++ I K++ + + V++ ++ E + +AL +V+ + +G F R+ R
Sbjct: 1 MKEADFIKLYKKRSGDKDKKIVKEKIDRFWEMLFKALEEEKKVKFKDWGVFETREMKGRK 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDSTLSN 99
P++ + I E K FRAGK L + +N+ +
Sbjct: 61 IIVPVSTEAIYTEPKKTIKFRAGKGLLDLINNESGDDNE 99
>gi|237741958|ref|ZP_04572439.1| DNA-binding protein HU [Fusobacterium sp. 4_1_13]
gi|256845298|ref|ZP_05550756.1| integration host factor, beta subunit [Fusobacterium sp.
3_1_36A2]
gi|294785402|ref|ZP_06750690.1| DNA-binding protein HU [Fusobacterium sp. 3_1_27]
gi|229429606|gb|EEO39818.1| DNA-binding protein HU [Fusobacterium sp. 4_1_13]
gi|256718857|gb|EEU32412.1| integration host factor, beta subunit [Fusobacterium sp.
3_1_36A2]
gi|294487116|gb|EFG34478.1| DNA-binding protein HU [Fusobacterium sp. 3_1_27]
Length = 102
Score = 63.3 bits (153), Expect = 1e-08, Method: Composition-based stats.
Identities = 26/70 (37%), Positives = 39/70 (55%), Gaps = 1/70 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K + A+K +L +D E++VN LE + AL G V GFGS+ V++R+AR
Sbjct: 1 MTKKEFVNAFAEK-GELKIKDSERLVNAFLETVEDALLKGDGVRFIGFGSWEVKERSARE 59
Query: 61 ARAPLAQKVI 70
+ P K+I
Sbjct: 60 VKNPQTGKMI 69
>gi|322437337|ref|YP_004219549.1| histone family protein DNA-binding protein [Acidobacterium sp.
MP5ACTX9]
gi|321165064|gb|ADW70769.1| histone family protein DNA-binding protein [Acidobacterium sp.
MP5ACTX9]
Length = 98
Score = 63.3 bits (153), Expect = 1e-08, Method: Composition-based stats.
Identities = 25/90 (27%), Positives = 42/90 (46%), Gaps = 1/90 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K++L+ +A+K +L + +++L E + G I G G +R ARL
Sbjct: 5 MTKTALVRALAEKM-ELTNKQTAAFLDLLAETAVKETKKNGEFTIPGIGKLVKAERKARL 63
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P + I ++ K V FR K K+ +
Sbjct: 64 GRNPQTGETIKIKAKTVVKFRVAKIAKDTI 93
>gi|254995187|ref|ZP_05277377.1| integration host factor, beta subunit [Anaplasma marginale str.
Mississippi]
gi|255003362|ref|ZP_05278326.1| integration host factor, beta subunit [Anaplasma marginale str.
Puerto Rico]
gi|255004485|ref|ZP_05279286.1| integration host factor, beta subunit [Anaplasma marginale str.
Virginia]
Length = 91
Score = 63.3 bits (153), Expect = 1e-08, Method: Composition-based stats.
Identities = 27/90 (30%), Positives = 44/90 (48%), Gaps = 3/90 (3%)
Query: 3 KSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLAR 62
KS LI +A+KNP L V +IV + + +++G RVE+RGFG+FS R +
Sbjct: 4 KSDLIQRVARKNPSLGEAVVSQIVGIFFSSIVGCVSSGCRVELRGFGAFSTRHYVLK--- 60
Query: 63 APLAQKVISVEEKMVPFFRAGKNLKERLNS 92
+ +FR + L + ++S
Sbjct: 61 NHSLNSRLPKPTYKRVYFRPSEKLVKAVDS 90
>gi|298373014|ref|ZP_06983004.1| DNA-binding protein HU-beta [Bacteroidetes oral taxon 274 str.
F0058]
gi|298275918|gb|EFI17469.1| DNA-binding protein HU-beta [Bacteroidetes oral taxon 274 str.
F0058]
Length = 91
Score = 63.3 bits (153), Expect = 1e-08, Method: Composition-based stats.
Identities = 30/90 (33%), Positives = 45/90 (50%), Gaps = 1/90 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K L+ IA + L+ D +K + + ++L G V + GFG+FSV KRAAR
Sbjct: 1 MNKQDLVKAIATE-AGLSQVDSKKALEAFENAVKKSLVKGESVTMIGFGTFSVVKRAARK 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
P K + ++ K V F+ G L E +
Sbjct: 60 GINPANGKPLQIKAKKVAKFKVGSKLAEAV 89
>gi|253583854|ref|ZP_04861052.1| predicted protein [Fusobacterium varium ATCC 27725]
gi|251834426|gb|EES62989.1| predicted protein [Fusobacterium varium ATCC 27725]
Length = 97
Score = 63.3 bits (153), Expect = 1e-08, Method: Composition-based stats.
Identities = 23/94 (24%), Positives = 46/94 (48%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M + I +N N ++ ++ V + + + +AL +V ++ +G+F ++ AR
Sbjct: 1 MTEKEFIKYYRNRNHLKNVKEAKEKVELFWDTILKALDEDEKVVLKNWGTFEKKEVKARR 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSPD 94
P K+I ++ K F+AGK L+ +N D
Sbjct: 61 VMIPKMDKIIIIDAKEKIRFKAGKGLRNVINGAD 94
>gi|326381558|ref|ZP_08203252.1| histone family protein DNA-binding protein [Gordonia
neofelifaecis NRRL B-59395]
gi|326199805|gb|EGD56985.1| histone family protein DNA-binding protein [Gordonia
neofelifaecis NRRL B-59395]
Length = 239
Score = 63.3 bits (153), Expect = 1e-08, Method: Composition-based stats.
Identities = 28/95 (29%), Positives = 47/95 (49%), Gaps = 1/95 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI + K+ + + V +++ + +A+ G V I GFG F R+RAAR+
Sbjct: 1 MNKAELIEELTKRL-DADRKTATNFVEQVIDTIVRAVNKGESVTITGFGVFEKRRRAARV 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDS 95
AR P + + V+ +P FR G K ++
Sbjct: 60 ARNPRTGETVKVKATSIPAFRPGAQFKAIVSGKQK 94
>gi|309808912|ref|ZP_07702790.1| DNA-binding protein HU-beta [Lactobacillus iners LactinV 01V1-a]
gi|308167842|gb|EFO69982.1| DNA-binding protein HU-beta [Lactobacillus iners LactinV 01V1-a]
Length = 47
Score = 63.3 bits (153), Expect = 1e-08, Method: Composition-based stats.
Identities = 21/47 (44%), Positives = 27/47 (57%)
Query: 45 IRGFGSFSVRKRAARLARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
+ GFG+F VR+RAAR R P I + VP F+ GK LKE +
Sbjct: 1 MIGFGTFEVRERAARKGRNPQTGAEIEIPASKVPAFKPGKALKEAVK 47
>gi|298385675|ref|ZP_06995233.1| integration host factor IHF alpha subunit [Bacteroides sp.
1_1_14]
gi|298261816|gb|EFI04682.1| integration host factor IHF alpha subunit [Bacteroides sp.
1_1_14]
Length = 466
Score = 63.3 bits (153), Expect = 1e-08, Method: Composition-based stats.
Identities = 18/77 (23%), Positives = 33/77 (42%)
Query: 17 LNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLARAPLAQKVISVEEKM 76
+ +D E V + QAL N V+I+G G+F + +R + + ++
Sbjct: 1 MTKKDAEAFVKEFFLLIEQALENEKTVKIKGLGTFKLVDVDSRESVNVNTGERFQIKGHT 60
Query: 77 VPFFRAGKNLKERLNSP 93
F NL++ +N P
Sbjct: 61 KVSFTPDTNLRDTINKP 77
>gi|193216658|ref|YP_001999900.1| DNA-binding protein HU [Mycoplasma arthritidis 158L3-1]
gi|193001981|gb|ACF07196.1| DNA-binding protein HU [Mycoplasma arthritidis 158L3-1]
Length = 92
Score = 63.3 bits (153), Expect = 1e-08, Method: Composition-based stats.
Identities = 23/91 (25%), Positives = 38/91 (41%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K LI A +N +E++ + + + + L V I GFG+F V ++
Sbjct: 1 MNKRELIVA-ASENTGKPQVLIEEVFDEIQRLIIEELVKKNTVSISGFGTFWVIEKPESQ 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
++ I V K P FR K ++N
Sbjct: 60 RINYFTKEKIVVAAKTEPKFRFSNVFKAQVN 90
>gi|310780573|ref|YP_003968905.1| histone family protein DNA-binding protein [Ilyobacter polytropus
DSM 2926]
gi|309749896|gb|ADO84557.1| histone family protein DNA-binding protein [Ilyobacter polytropus
DSM 2926]
Length = 92
Score = 63.3 bits (153), Expect = 1e-08, Method: Composition-based stats.
Identities = 25/90 (27%), Positives = 45/90 (50%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K I + ++ + E+ +N LL+ + L +G V G+G + V +RA R
Sbjct: 1 MTKKEFIAKYCENGGFVSKAEAERKLNALLDTIENILVDGNEVNFIGWGKWEVVERAKRK 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P + ++V+ K V F+ GK L +++
Sbjct: 61 VRNPQTGRKMTVKAKKVVKFKPGKKLVDKI 90
>gi|237716500|ref|ZP_04546981.1| DNA-binding protein HU [Bacteroides sp. D1]
gi|237720681|ref|ZP_04551162.1| DNA-binding protein HU [Bacteroides sp. 2_2_4]
gi|294645092|ref|ZP_06722818.1| DNA-binding protein HU [Bacteroides ovatus SD CC 2a]
gi|229444147|gb|EEO49938.1| DNA-binding protein HU [Bacteroides sp. D1]
gi|229449516|gb|EEO55307.1| DNA-binding protein HU [Bacteroides sp. 2_2_4]
gi|292639598|gb|EFF57890.1| DNA-binding protein HU [Bacteroides ovatus SD CC 2a]
Length = 90
Score = 63.3 bits (153), Expect = 1e-08, Method: Composition-based stats.
Identities = 26/89 (29%), Positives = 48/89 (53%), Gaps = 1/89 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M +A++ +D +++ LL MTQ L G + ++GFGSF V+K+A R+
Sbjct: 1 MNNKEFTSELAERL-GYTIKDTSELIGSLLSSMTQELEEGNVIAVQGFGSFEVKKKAERI 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKER 89
+ P +++ + V K+V +R LK++
Sbjct: 60 SINPASKQRMLVPPKLVLSYRPSNTLKDK 88
>gi|297516328|ref|ZP_06934714.1| transcriptional regulator HU subunit alpha [Escherichia coli
OP50]
Length = 63
Score = 63.3 bits (153), Expect = 1e-08, Method: Composition-based stats.
Identities = 23/64 (35%), Positives = 35/64 (54%), Gaps = 1/64 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI IA+K +L+ + + L +T++L G V++ GFG+F V RA R
Sbjct: 1 MNKTQLIDVIAEK-AELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERT 59
Query: 61 ARAP 64
R P
Sbjct: 60 GRNP 63
>gi|307565346|ref|ZP_07627839.1| DNA-binding protein HU [Prevotella amnii CRIS 21A-A]
gi|307346015|gb|EFN91359.1| DNA-binding protein HU [Prevotella amnii CRIS 21A-A]
Length = 96
Score = 63.3 bits (153), Expect = 1e-08, Method: Composition-based stats.
Identities = 24/92 (26%), Positives = 43/92 (46%), Gaps = 1/92 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M I ++ + ++ +K V LL+EM ++ G ++I GFGSF ++KR R+
Sbjct: 1 MNNKEFIAKLSNQM-GFTQEESQKCVKTLLDEMGKSFELGKPIQISGFGSFDIKKRMERI 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
P + V K+V F+ +K +
Sbjct: 60 IVNPATGVRMLVPPKLVLSFKPTNTIKAHIKK 91
>gi|262408098|ref|ZP_06084646.1| integration host factor, alpha subunit [Bacteroides sp. 2_1_22]
gi|294809492|ref|ZP_06768195.1| DNA-binding protein HU [Bacteroides xylanisolvens SD CC 1b]
gi|298484174|ref|ZP_07002340.1| HimA protein [Bacteroides sp. D22]
gi|262354906|gb|EEZ03998.1| integration host factor, alpha subunit [Bacteroides sp. 2_1_22]
gi|294443310|gb|EFG12074.1| DNA-binding protein HU [Bacteroides xylanisolvens SD CC 1b]
gi|295084185|emb|CBK65708.1| Bacterial nucleoid DNA-binding protein [Bacteroides xylanisolvens
XB1A]
gi|298269678|gb|EFI11273.1| HimA protein [Bacteroides sp. D22]
Length = 92
Score = 63.3 bits (153), Expect = 1e-08, Method: Composition-based stats.
Identities = 26/89 (29%), Positives = 48/89 (53%), Gaps = 1/89 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M +A++ +D +++ LL MTQ L G + ++GFGSF V+K+A R+
Sbjct: 3 MNNKEFTSELAERL-GYTIKDTSELIGSLLSSMTQELEEGNVIAVQGFGSFEVKKKAERI 61
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKER 89
+ P +++ + V K+V +R LK++
Sbjct: 62 SINPASKQRMLVPPKLVLSYRPSNTLKDK 90
>gi|190571140|ref|YP_001975498.1| DNA-binding protein, HU family [Wolbachia endosymbiont of Culex
quinquefasciatus Pel]
gi|213018544|ref|ZP_03334352.1| DNA-binding protein, HU family [Wolbachia endosymbiont of Culex
quinquefasciatus JHB]
gi|190357412|emb|CAQ54846.1| DNA-binding protein, HU family [Wolbachia endosymbiont of Culex
quinquefasciatus Pel]
gi|212995495|gb|EEB56135.1| DNA-binding protein, HU family [Wolbachia endosymbiont of Culex
quinquefasciatus JHB]
Length = 99
Score = 63.3 bits (153), Expect = 1e-08, Method: Composition-based stats.
Identities = 23/91 (25%), Positives = 48/91 (52%), Gaps = 1/91 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+++ I + L+ +D I++ +L+E+ +LA G V+I FG+F V+ + R
Sbjct: 9 TKATIAECI-NQEIGLSKEDSIAIIDDILDEIKTSLAKDGIVKISSFGTFLVKNKKERPG 67
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
P + + ++ + FR K +K+ +N+
Sbjct: 68 NIPKTSERVVIKARKSISFRPSKMMKKLINN 98
>gi|88606926|ref|YP_505361.1| DNA-binding protein HU [Anaplasma phagocytophilum HZ]
gi|88597989|gb|ABD43459.1| DNA-binding protein HU [Anaplasma phagocytophilum HZ]
Length = 91
Score = 62.9 bits (152), Expect = 1e-08, Method: Composition-based stats.
Identities = 15/91 (16%), Positives = 34/91 (37%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K +I +D ++++ + AL + + G+ V + A +
Sbjct: 1 MSK-EIIVRALMSGLGFTKKDSSSAYDVVMSAIKTALETNHSIRLHNVGTLHVIQCAEKK 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
P + ++ K FR+ + L + +N
Sbjct: 60 YHNPKTGHLETLPPKRRVRFRSSRKLLDTVN 90
>gi|159186493|ref|NP_396041.2| DNA binding protein [Agrobacterium tumefaciens str. C58]
gi|159141553|gb|AAK90482.2| DNA binding protein [Agrobacterium tumefaciens str. C58]
Length = 76
Score = 62.9 bits (152), Expect = 1e-08, Method: Composition-based stats.
Identities = 22/76 (28%), Positives = 31/76 (40%)
Query: 17 LNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLARAPLAQKVISVEEKM 76
+ + IV + +T A +G I GFG F ++ R AR P I V
Sbjct: 1 MTKAQAKSIVETVFASITTAATSGAETSIPGFGKFKIKDTPEREARNPATGATIKVAAAK 60
Query: 77 VPFFRAGKNLKERLNS 92
F+ K LK+ LN
Sbjct: 61 KLTFQPAKALKDVLNK 76
>gi|58699046|ref|ZP_00373888.1| DNA-binding protein, HU family [Wolbachia endosymbiont of
Drosophila ananassae]
gi|225629912|ref|YP_002726703.1| DNA-binding protein, HU family [Wolbachia sp. wRi]
gi|58534440|gb|EAL58597.1| DNA-binding protein, HU family [Wolbachia endosymbiont of
Drosophila ananassae]
gi|225591893|gb|ACN94912.1| DNA-binding protein, HU family [Wolbachia sp. wRi]
Length = 101
Score = 62.9 bits (152), Expect = 1e-08, Method: Composition-based stats.
Identities = 22/81 (27%), Positives = 44/81 (54%)
Query: 12 KKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLARAPLAQKVIS 71
+ L+ +D I++ +L+E+ +LA G V+I FG+F V+K+ R P + +
Sbjct: 21 NQEIGLSKEDSASIIDDILDEIKTSLAKDGIVKISSFGTFLVKKKKERPGNIPNTSEKVM 80
Query: 72 VEEKMVPFFRAGKNLKERLNS 92
++ + FR K +K+ +N+
Sbjct: 81 IQARNSVSFRPSKIIKKSINN 101
>gi|332879556|ref|ZP_08447251.1| DNA-binding protein HU [Capnocytophaga sp. oral taxon 329 str.
F0087]
gi|332682522|gb|EGJ55424.1| DNA-binding protein HU [Capnocytophaga sp. oral taxon 329 str.
F0087]
Length = 494
Score = 62.9 bits (152), Expect = 2e-08, Method: Composition-based stats.
Identities = 21/96 (21%), Positives = 40/96 (41%), Gaps = 3/96 (3%)
Query: 1 MIKSSLIGTIAKKNP---KLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRA 57
M K LI +A L +D + V + E + + L V+++G G+F +
Sbjct: 1 MDKKVLIQDLADGLVLRRGLPKKDADVFVRSVFEIIGEYLQTDKIVKVKGLGTFKLVTVD 60
Query: 58 ARLARAPLAQKVISVEEKMVPFFRAGKNLKERLNSP 93
+R + + I ++E F L++ +N P
Sbjct: 61 SRESVDVNTGERIVIKEYTKINFTPDPVLRDAVNKP 96
>gi|253682948|ref|ZP_04863735.1| DNA-binding protein HU [Clostridium phage D-1873]
gi|253560874|gb|EES90336.1| DNA-binding protein HU [Clostridium phage D-1873]
Length = 95
Score = 62.9 bits (152), Expect = 2e-08, Method: Composition-based stats.
Identities = 24/96 (25%), Positives = 48/96 (50%), Gaps = 5/96 (5%)
Query: 1 MIKSSL----IGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKR 56
M+K+ L + + K K++ +D++ I + +LE + + + G++ G+F R
Sbjct: 1 MVKTELLGRMVEKLEGKEVKVSKKDMDAIYSAVLETVAEVVKEEGKLTTP-IGTFKNTTR 59
Query: 57 AARLARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
AR+ R P + + I + E F+ K +KE+ N
Sbjct: 60 GARVGRNPRSGEEIQIAESHALTFKQSKAVKEQFNK 95
>gi|282878888|ref|ZP_06287652.1| DNA-binding protein HU [Prevotella buccalis ATCC 35310]
gi|281298887|gb|EFA91292.1| DNA-binding protein HU [Prevotella buccalis ATCC 35310]
Length = 458
Score = 62.9 bits (152), Expect = 2e-08, Method: Composition-based stats.
Identities = 24/94 (25%), Positives = 49/94 (52%), Gaps = 2/94 (2%)
Query: 1 MIK-SSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAAR 59
MIK + L + +++ +L+ + E + +L++ +T L +V+I+G G+F V AR
Sbjct: 1 MIKITDLASVLEEQH-QLSKSEAEFFIPLLVDVLTTGLKADKQVKIKGLGTFKVTSVNAR 59
Query: 60 LARAPLAQKVISVEEKMVPFFRAGKNLKERLNSP 93
+ + I +E + F L++++NSP
Sbjct: 60 ESVDVNTGERIIIEGREKISFTPEPILRDKVNSP 93
>gi|255689974|ref|ZP_05413649.1| DNA-binding protein HU [Bacteroides finegoldii DSM 17565]
gi|260624581|gb|EEX47452.1| DNA-binding protein HU [Bacteroides finegoldii DSM 17565]
Length = 71
Score = 62.9 bits (152), Expect = 2e-08, Method: Composition-based stats.
Identities = 22/68 (32%), Positives = 37/68 (54%)
Query: 23 EKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLARAPLAQKVISVEEKMVPFFRA 82
+K ++ + +T A+ G +V + GFG+FSV +RA R P + I++ K V F+A
Sbjct: 3 KKALDAFVTSVTNAMKAGEKVSLVGFGTFSVSERAERTGINPSTKATITIPAKKVAKFKA 62
Query: 83 GKNLKERL 90
G L +
Sbjct: 63 GAELSAAV 70
>gi|284931152|gb|ADC31090.1| Histone-like DNA-binding superfamily protein HimA/HU/Integration
host factor [Mycoplasma gallisepticum str. F]
Length = 123
Score = 62.9 bits (152), Expect = 2e-08, Method: Composition-based stats.
Identities = 20/87 (22%), Positives = 39/87 (44%), Gaps = 1/87 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
KS + IA+ ++ + V+ + + + + + + G+V + G+F V R++
Sbjct: 3 TKSEICKIIAECT-GVSPKLVKACFQVYSDLVKKEIKSQGQVRLPELGTFRVTIGRERIS 61
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKE 88
P+ + K FRA K LKE
Sbjct: 62 VNPITGAQTRIPPKPKVKFRAAKPLKE 88
>gi|110639133|ref|YP_679342.1| DNA-binding protein HU-beta [Cytophaga hutchinsonii ATCC 33406]
gi|110281814|gb|ABG60000.1| DNA-binding protein HU-beta [Cytophaga hutchinsonii ATCC 33406]
Length = 90
Score = 62.5 bits (151), Expect = 2e-08, Method: Composition-based stats.
Identities = 25/67 (37%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI IA ++ KL D ++ ++ L +AL G V + GFGSF RAAR
Sbjct: 1 MNKAELIDAIAAES-KLTKADSKRALDAFLNATGKALKKGESVVLIGFGSFKTATRAARN 59
Query: 61 ARAPLAQ 67
R P
Sbjct: 60 GRNPQTG 66
>gi|71483084|gb|AAZ32517.1| nucleoid DNA binding protein [uncultured euryarchaeote Alv-FOS4]
Length = 89
Score = 62.5 bits (151), Expect = 2e-08, Method: Composition-based stats.
Identities = 26/84 (30%), Positives = 42/84 (50%), Gaps = 1/84 (1%)
Query: 4 SSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLARA 63
+ + +AKK L+ + +++N LEE+ + + G V I G G F R + AR R
Sbjct: 5 TEISKPVAKKT-GLSQKKAREVINAFLEEVLEQVNKGESVRIAGLGIFERRVQKARKVRN 63
Query: 64 PLAQKVISVEEKMVPFFRAGKNLK 87
P K++ V EK F+ N+K
Sbjct: 64 PRTGKMMKVGEKKKLVFKPSANIK 87
>gi|240142432|ref|YP_002966942.1| putative integration host factor [Methylobacterium extorquens AM1]
gi|240012376|gb|ACS43601.1| Putative integration host factor [Methylobacterium extorquens AM1]
Length = 140
Score = 62.5 bits (151), Expect = 2e-08, Method: Composition-based stats.
Identities = 27/91 (29%), Positives = 45/91 (49%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M + L +A + L ++ ++V L + + LA G V+++GFG F VR R AR
Sbjct: 45 MTLAELESVLAGRL-GLGSEETSRVVRAALSLVAERLAAGEDVKLQGFGRFCVRDRPARR 103
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
+ P + + V + FR + L+E LN
Sbjct: 104 RKDPRDGRELEVPARRGAVFRPSRLLREALN 134
>gi|313159618|gb|EFR58978.1| putative DNA-binding protein HU [Alistipes sp. HGB5]
Length = 92
Score = 62.5 bits (151), Expect = 2e-08, Method: Composition-based stats.
Identities = 21/93 (22%), Positives = 40/93 (43%), Gaps = 1/93 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ ++ +A++ + V +V +EE+ A V +RGFG+F ++ R +
Sbjct: 1 MTKADIVKQLAQET-GVEAVTVLAVVEGFMEEVRAAQIRKENVFLRGFGTFLIKHRKEKT 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSP 93
AR I + +P F+ + L
Sbjct: 60 ARNITKNTTIKIPAHDIPAFKPSPAFQRLLEKK 92
>gi|269121288|ref|YP_003309465.1| histone family protein DNA-binding protein [Sebaldella termitidis
ATCC 33386]
gi|268615166|gb|ACZ09534.1| histone family protein DNA-binding protein [Sebaldella termitidis
ATCC 33386]
Length = 92
Score = 62.5 bits (151), Expect = 2e-08, Method: Composition-based stats.
Identities = 25/74 (33%), Positives = 37/74 (50%), Gaps = 1/74 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K I AK + + E++VN L + ++L G V+ G+G+F V+KRAAR
Sbjct: 1 MSKKEFIEAYAKATGE-TKKRSEELVNEFLGTVEKSLTKGETVQFVGWGTFGVQKRAARK 59
Query: 61 ARAPLAQKVISVEE 74
R P K I +
Sbjct: 60 GRNPQTGKEIKIAA 73
>gi|21672413|ref|NP_660480.1| integration host factor alpha-subunit [Buchnera aphidicola str.
Sg (Schizaphis graminum)]
gi|25008628|sp|Q8KA11|IHFA_BUCAP RecName: Full=Integration host factor subunit alpha;
Short=IHF-alpha
gi|21623022|gb|AAM67691.1| integration host factor Alpha-subunit [Buchnera aphidicola str.
Sg (Schizaphis graminum)]
Length = 100
Score = 62.5 bits (151), Expect = 2e-08, Method: Composition-based stats.
Identities = 26/89 (29%), Positives = 50/89 (56%), Gaps = 1/89 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+++ + +K KL +D ++ V EE+ ++L G V++ GFG+F ++ + R
Sbjct: 4 TKAAISENLFEKL-KLTKRDSKEFVEFFFEEVRKSLEKGEDVKLSGFGNFQLKNKKERPG 62
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P + I + ++ V F+AG+ LK R+
Sbjct: 63 RNPRTGENILITQRRVVIFKAGQKLKNRV 91
>gi|325269257|ref|ZP_08135876.1| putative integration host factor IHF alpha subunit [Prevotella
multiformis DSM 16608]
gi|324988486|gb|EGC20450.1| putative integration host factor IHF alpha subunit [Prevotella
multiformis DSM 16608]
Length = 420
Score = 62.5 bits (151), Expect = 2e-08, Method: Composition-based stats.
Identities = 18/85 (21%), Positives = 39/85 (45%), Gaps = 1/85 (1%)
Query: 9 TIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLARAPLAQK 68
+AK+ KL+ D V+ + ++ L +G V+++G G+F ++ R + +
Sbjct: 12 ALAKQY-KLSASDASVFVDSVFAIISSELKDGRPVKVKGLGTFKIQSVKPRESVNVNTGE 70
Query: 69 VISVEEKMVPFFRAGKNLKERLNSP 93
+ ++ F +KE +N P
Sbjct: 71 RVLIKGHDKITFTPDAAMKELVNKP 95
>gi|299135887|ref|ZP_07029071.1| histone family protein DNA-binding protein [Acidobacterium sp.
MP5ACTX8]
gi|298602011|gb|EFI58165.1| histone family protein DNA-binding protein [Acidobacterium sp.
MP5ACTX8]
Length = 98
Score = 62.5 bits (151), Expect = 2e-08, Method: Composition-based stats.
Identities = 24/95 (25%), Positives = 41/95 (43%), Gaps = 1/95 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
+ K+ L+ +A+K +L + + +L E + G I G G +R AR+
Sbjct: 5 ITKTQLVRLLAEKL-ELTNKQTAAFLELLAETAVKETKKNGEFTIPGIGKLVKAERKARV 63
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDS 95
R P + I ++ K V FR K K+ + P
Sbjct: 64 GRNPQTGEAIKIKAKTVVKFRVAKVAKDTIAPPKK 98
>gi|239627561|ref|ZP_04670592.1| predicted protein [Clostridiales bacterium 1_7_47_FAA]
gi|239517707|gb|EEQ57573.1| predicted protein [Clostridiales bacterium 1_7_47FAA]
Length = 99
Score = 62.5 bits (151), Expect = 2e-08, Method: Composition-based stats.
Identities = 14/88 (15%), Positives = 35/88 (39%), Gaps = 1/88 (1%)
Query: 3 KSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLAR 62
K ++ IA+++ + + + + +T+ LA+G R I +F + +
Sbjct: 4 KEDIVTRIARRSGH-TKKATYEFMKAFGDILTETLADGERFHIHKVITFRPEYKEECVRY 62
Query: 63 APLAQKVISVEEKMVPFFRAGKNLKERL 90
P ++ + + + G L+ L
Sbjct: 63 NPKTREEVIIPPHIKVKTVIGSELERAL 90
>gi|222475030|ref|YP_002563445.1| Histone-like bacterial DNA-binding protein [Anaplasma marginale
str. Florida]
gi|254994876|ref|ZP_05277066.1| Histone-like bacterial DNA-binding protein [Anaplasma marginale
str. Mississippi]
gi|255003010|ref|ZP_05277974.1| Histone-like bacterial DNA-binding protein [Anaplasma marginale
str. Puerto Rico]
gi|255004136|ref|ZP_05278937.1| Histone-like bacterial DNA-binding protein [Anaplasma marginale
str. Virginia]
gi|269958917|ref|YP_003328706.1| DNA-binding protein HU [Anaplasma centrale str. Israel]
gi|222419166|gb|ACM49189.1| Histone-like bacterial DNA-binding protein [Anaplasma marginale
str. Florida]
gi|269848748|gb|ACZ49392.1| DNA-binding protein HU [Anaplasma centrale str. Israel]
Length = 91
Score = 62.5 bits (151), Expect = 2e-08, Method: Composition-based stats.
Identities = 16/91 (17%), Positives = 36/91 (39%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K +I N +D ++++ + AL + + G+ V + A +
Sbjct: 1 MSK-EIIVRALMSNLGFTKKDSSSAYDVVMSAVKTALETNHSIRLHNVGTLHVIQCAEKK 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
P ++ ++ K FR+ + L + +N
Sbjct: 60 YHNPKTGRLETLPPKRRVRFRSSRKLLDTVN 90
>gi|19704359|ref|NP_603921.1| DNA-binding protein HU [Fusobacterium nucleatum subsp. nucleatum
ATCC 25586]
gi|296327419|ref|ZP_06869966.1| DNA-binding protein HU [Fusobacterium nucleatum subsp. nucleatum
ATCC 23726]
gi|19714609|gb|AAL95220.1| DNA-binding protein HU [Fusobacterium nucleatum subsp. nucleatum
ATCC 25586]
gi|296155432|gb|EFG96202.1| DNA-binding protein HU [Fusobacterium nucleatum subsp. nucleatum
ATCC 23726]
Length = 102
Score = 62.5 bits (151), Expect = 2e-08, Method: Composition-based stats.
Identities = 26/70 (37%), Positives = 39/70 (55%), Gaps = 1/70 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K + A+K +L +D E++VN LE + AL G V GFGS+ V++R+AR
Sbjct: 1 MTKKEFVNAFAEK-GELKIKDSERLVNAFLETVENALLKGDGVRFIGFGSWEVKERSARE 59
Query: 61 ARAPLAQKVI 70
+ P K+I
Sbjct: 60 VKNPQTGKMI 69
>gi|253584117|ref|ZP_04861315.1| predicted protein [Fusobacterium varium ATCC 27725]
gi|251834689|gb|EES63252.1| predicted protein [Fusobacterium varium ATCC 27725]
Length = 97
Score = 62.5 bits (151), Expect = 2e-08, Method: Composition-based stats.
Identities = 21/95 (22%), Positives = 46/95 (48%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M + I ++N N+++ ++ +++ + +AL G+V ++ +G F ++ AR
Sbjct: 1 MTEKEFIKFYKRRNFSRNHKEAKEKIDLFWNAILKALEEDGKVVLKNWGRFEKKEVKARK 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDS 95
P + + E K FR G L++ +N D+
Sbjct: 61 IVIPKMNEAVITEAKKKIRFRTGTGLQDAVNGFDA 95
>gi|317476991|ref|ZP_07936233.1| bacterial DNA-binding protein [Bacteroides eggerthii 1_2_48FAA]
gi|316906784|gb|EFV28496.1| bacterial DNA-binding protein [Bacteroides eggerthii 1_2_48FAA]
Length = 90
Score = 62.5 bits (151), Expect = 2e-08, Method: Composition-based stats.
Identities = 24/89 (26%), Positives = 48/89 (53%), Gaps = 1/89 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M ++++ +D ++V LL +MT+ L G + I+GFG+F V+K+A R+
Sbjct: 1 MNNKEFTSELSRRL-GYTLKDTSELVTSLLSDMTRQLEEGNVISIQGFGTFEVKKKAERI 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKER 89
+ P ++ + V K+V ++ LK++
Sbjct: 60 SVNPTTKQRMLVPPKLVLTYKPSTLLKDK 88
>gi|321311008|ref|YP_004193337.1| DNA-binding protein hu-alpha [Mycoplasma haemofelis str. Langford
1]
gi|319802852|emb|CBY93498.1| DNA-binding protein hu-alpha [Mycoplasma haemofelis str. Langford
1]
Length = 101
Score = 62.5 bits (151), Expect = 2e-08, Method: Composition-based stats.
Identities = 23/89 (25%), Positives = 42/89 (47%), Gaps = 1/89 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K L+ I+K++ L+ + V+ ++N + + + L V + G F V +R+AR
Sbjct: 3 NKKDLLSKISKES-NLSMKQVQDVLNSYQKTILEELMASKEVVVLDLGKFKVSQRSARTG 61
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERL 90
PL +K I + K VP + K +
Sbjct: 62 INPLTKKPIEIPAKDVPKLVPSRKFKGLV 90
>gi|288819045|ref|YP_003433393.1| integration host factor beta subunit [Hydrogenobacter
thermophilus TK-6]
gi|288788445|dbj|BAI70192.1| integration host factor beta subunit [Hydrogenobacter
thermophilus TK-6]
gi|308752628|gb|ADO46111.1| histone family protein DNA-binding protein [Hydrogenobacter
thermophilus TK-6]
Length = 98
Score = 62.5 bits (151), Expect = 2e-08, Method: Composition-based stats.
Identities = 30/91 (32%), Positives = 48/91 (52%), Gaps = 1/91 (1%)
Query: 3 KSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLAR 62
KS + I+K+ ++ + + +V + + Q A GRVEIRGFG F +R+R R +
Sbjct: 8 KSEIASKISKEY-QIPLELAKSLVEGVFSWIVQKTAEDGRVEIRGFGVFKLRRRGGRFTK 66
Query: 63 APLAQKVISVEEKMVPFFRAGKNLKERLNSP 93
P + VEE+ + F+ K L +RLN
Sbjct: 67 NPKTGIEMYVEERYLMSFKPSKKLLKRLNEK 97
>gi|255009412|ref|ZP_05281538.1| putative histone-like DNA-binding protein HU2 [Bacteroides
fragilis 3_1_12]
gi|313147171|ref|ZP_07809364.1| DNA-binding protein HU [Bacteroides fragilis 3_1_12]
gi|313135938|gb|EFR53298.1| DNA-binding protein HU [Bacteroides fragilis 3_1_12]
Length = 96
Score = 62.5 bits (151), Expect = 2e-08, Method: Composition-based stats.
Identities = 24/92 (26%), Positives = 46/92 (50%), Gaps = 1/92 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M ++++ N +D ++ LL ++ Q L G + I+GFG+F V+K+A R+
Sbjct: 1 MNNKEFTSELSRRL-GYNTKDTSDLITTLLSDIIQELQEGNAIGIQGFGAFEVKKKAERI 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
P+ + + V K+V F+ LK++
Sbjct: 60 VINPVTRLRLLVPPKLVLAFKPSPILKDKFKE 91
>gi|31544347|ref|NP_852925.1| histone-like DNA-binding superfamily protein HimA/HU/Integration
host factor [Mycoplasma gallisepticum str. R(low)]
gi|31541191|gb|AAP56493.1| Histone-like DNA-binding superfamily protein HimA/HU/Integration
host factor [Mycoplasma gallisepticum str. R(low)]
gi|284930387|gb|ADC30326.1| Histone-like DNA-binding superfamily protein HimA/HU/Integration
host factor [Mycoplasma gallisepticum str. R(high)]
Length = 118
Score = 62.1 bits (150), Expect = 2e-08, Method: Composition-based stats.
Identities = 20/87 (22%), Positives = 39/87 (44%), Gaps = 1/87 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
KS + IA+ ++ + V+ + + + + + + G+V + G+F V R++
Sbjct: 3 TKSEICKIIAECT-GVSPKLVKACFQVYSDLVKKEIKSQGQVRLPELGTFRVTIGRERIS 61
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKE 88
P+ + K FRA K LKE
Sbjct: 62 VNPITGAQTRIPPKPKVKFRAAKPLKE 88
>gi|313206026|ref|YP_004045203.1| bacterial nucleoid protein hbs [Riemerella anatipestifer DSM
15868]
gi|312445342|gb|ADQ81697.1| bacterial nucleoid protein Hbs [Riemerella anatipestifer DSM
15868]
gi|325336533|gb|ADZ12807.1| Bacterial nucleoid DNA-binding protein [Riemerella anatipestifer
RA-GD]
Length = 96
Score = 62.1 bits (150), Expect = 2e-08, Method: Composition-based stats.
Identities = 30/97 (30%), Positives = 48/97 (49%), Gaps = 2/97 (2%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGG-RVEIRGFGSFSVRKRAAR 59
M KS LI +A K+ ++ +K + + +T+ L +V + GFG+FSV +RAAR
Sbjct: 1 MNKSELIDVMA-KDAEITKAAAKKALESFVNAVTETLKKKDGKVSLVGFGTFSVAERAAR 59
Query: 60 LARAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDST 96
P +K I + K V F+AG L + +
Sbjct: 60 QGINPATKKAIKIPAKKVAKFKAGSELADAVAGAKKK 96
>gi|319902105|ref|YP_004161833.1| histone family protein DNA-binding protein [Bacteroides
helcogenes P 36-108]
gi|319417136|gb|ADV44247.1| histone family protein DNA-binding protein [Bacteroides
helcogenes P 36-108]
Length = 90
Score = 62.1 bits (150), Expect = 2e-08, Method: Composition-based stats.
Identities = 25/89 (28%), Positives = 48/89 (53%), Gaps = 1/89 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M +++K +D ++V LL +MT+ L G V ++GFG+F V+K+A R+
Sbjct: 1 MNNKEFTSELSRKL-GYTLKDTSELVASLLSDMTRQLEEGNIVSVQGFGTFEVKKKAERI 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKER 89
+ P ++ + V K+V ++ LK++
Sbjct: 60 SVNPNTKQRMLVPPKLVLTYKPSTLLKDK 88
>gi|323345507|ref|ZP_08085730.1| hypothetical protein HMPREF0663_12266 [Prevotella oralis ATCC
33269]
gi|323093621|gb|EFZ36199.1| hypothetical protein HMPREF0663_12266 [Prevotella oralis ATCC
33269]
Length = 441
Score = 62.1 bits (150), Expect = 2e-08, Method: Composition-based stats.
Identities = 24/94 (25%), Positives = 48/94 (51%), Gaps = 2/94 (2%)
Query: 1 MIK-SSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAAR 59
M K S L I KK L+ ++ + V+ + E +++AL +V+I+G G+F V + R
Sbjct: 3 MNKISYLSTFIQKKYS-LSQKEADNFVSQMFEVISEALHTEKQVKIKGLGTFKVMSVSPR 61
Query: 60 LARAPLAQKVISVEEKMVPFFRAGKNLKERLNSP 93
+ + +E + F ++++R+N+P
Sbjct: 62 ESVNVNTGERFVIEGRDKISFTPETSMRDRVNTP 95
>gi|291569292|dbj|BAI91564.1| DNA-binding protein HU [Arthrospira platensis NIES-39]
Length = 93
Score = 62.1 bits (150), Expect = 2e-08, Method: Composition-based stats.
Identities = 23/89 (25%), Positives = 46/89 (51%), Gaps = 1/89 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M + L+ +A+K KL + V I+++ +++ + +G V +RG G F+++++ AR
Sbjct: 1 MKTNELVQRVAEK-AKLPKKRVRAILDLAFSAISEEIESGQPVVVRGLGKFTLKEQPART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKER 89
P + V + V FR K K++
Sbjct: 60 KTNPETGETTEVPARTVVNFRVIKPSKDK 88
>gi|119490325|ref|ZP_01622803.1| Histone-like DNA-binding protein [Lyngbya sp. PCC 8106]
gi|119453984|gb|EAW35138.1| Histone-like DNA-binding protein [Lyngbya sp. PCC 8106]
Length = 176
Score = 62.1 bits (150), Expect = 2e-08, Method: Composition-based stats.
Identities = 17/79 (21%), Positives = 37/79 (46%)
Query: 12 KKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLARAPLAQKVIS 71
+K+ + V +++ ++ + L +G V+I FG F ++ R +R P + I
Sbjct: 7 QKSTGFSEGIVNAVIDSFIKFIQLELRSGNEVKIPDFGVFYSKELPERQSRNPRTGESII 66
Query: 72 VEEKMVPFFRAGKNLKERL 90
+ K P FR + ++ +
Sbjct: 67 AKPKTKPKFRFYDSFEKMI 85
>gi|322433108|ref|YP_004210357.1| histone family protein DNA-binding protein [Acidobacterium sp.
MP5ACTX9]
gi|322433120|ref|YP_004210369.1| histone family protein DNA-binding protein [Acidobacterium sp.
MP5ACTX9]
gi|321165335|gb|ADW71039.1| histone family protein DNA-binding protein [Acidobacterium sp.
MP5ACTX9]
gi|321165347|gb|ADW71051.1| histone family protein DNA-binding protein [Acidobacterium sp.
MP5ACTX9]
Length = 125
Score = 62.1 bits (150), Expect = 3e-08, Method: Composition-based stats.
Identities = 24/90 (26%), Positives = 42/90 (46%), Gaps = 1/90 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K++L+ +++K +L+ + + ++L Q G I G G +RAARL
Sbjct: 33 MTKAALVLLVSEKM-ELSKKQTAEFFDLLAATAIQETKKNGEFTIPGLGKLVKAQRAARL 91
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P + I ++ K FR K K+ +
Sbjct: 92 GRNPQTGETIKIKAKTAVKFRVAKAAKDLI 121
>gi|156088029|ref|XP_001611421.1| hypothetical protein [Babesia bovis T2Bo]
gi|154798675|gb|EDO07853.1| conserved hypothetical protein [Babesia bovis]
Length = 175
Score = 62.1 bits (150), Expect = 3e-08, Method: Composition-based stats.
Identities = 23/91 (25%), Positives = 39/91 (42%), Gaps = 1/91 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K LI IA + + +DV +V+ L+ + + L V I FG F R RL
Sbjct: 80 TKKQLISEIA-QTTNMTQKDVGIVVDEFLKSIVKHLGENKEVSIAKFGLFHNSLRGPRLM 138
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
+ ++ + + VP R + +K +N
Sbjct: 139 KNLQTGEMYTAKPVYVPNVRFYEAVKAEVNQ 169
>gi|226357673|ref|YP_002787412.1| DNA-binding protein HU (Histone-like protein) [Deinococcus deserti
VCD115]
gi|226319915|gb|ACO47908.1| putative DNA-binding protein HU (Histone-like protein) [Deinococcus
deserti VCD115]
Length = 121
Score = 62.1 bits (150), Expect = 3e-08, Method: Composition-based stats.
Identities = 25/85 (29%), Positives = 45/85 (52%), Gaps = 1/85 (1%)
Query: 3 KSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLAR 62
K+ ++ IA + L + E++V+++LE + +A+ +G V + G G+ SVR+ AAR
Sbjct: 35 KTQMVDMIADR-AGLTKKQSEEVVSVMLESIVEAVRSGKSVGLPGLGTLSVRETAARTGV 93
Query: 63 APLAQKVISVEEKMVPFFRAGKNLK 87
P + I + F+A LK
Sbjct: 94 RPGTSEKIQIAAGKKLAFKAATTLK 118
>gi|73666903|ref|YP_302919.1| histone-like DNA-binding protein [Ehrlichia canis str. Jake]
gi|72394044|gb|AAZ68321.1| Histone-like bacterial DNA-binding protein [Ehrlichia canis str.
Jake]
Length = 94
Score = 62.1 bits (150), Expect = 3e-08, Method: Composition-based stats.
Identities = 17/80 (21%), Positives = 35/80 (43%)
Query: 16 KLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLARAPLAQKVISVEEK 75
L + + ++++ + AL N + + G+ V + A + P K+ ++ K
Sbjct: 15 GLTKKVSSQAYDLVMLSIQNALENSHLIRLHNVGTLHVIQCAEKKYHNPKTGKLETLAPK 74
Query: 76 MVPFFRAGKNLKERLNSPDS 95
FR+ K L +NS D+
Sbjct: 75 KRVRFRSSKKLSNAINSLDN 94
>gi|13357842|ref|NP_078116.1| DNA-binding protein HU-alpha (HU-2) [Ureaplasma parvum serovar 3
str. ATCC 700970]
gi|167971917|ref|ZP_02554194.1| DNA-binding protein HU [Ureaplasma parvum serovar 6 str. ATCC
27818]
gi|168282463|ref|ZP_02690130.1| DNA-binding protein HU [Ureaplasma parvum serovar 14 str. ATCC
33697]
gi|168308619|ref|ZP_02691294.1| DNA-binding protein HU [Ureaplasma parvum serovar 1 str. ATCC
27813]
gi|170762221|ref|YP_001752366.1| DNA-binding protein HU [Ureaplasma parvum serovar 3 str. ATCC
27815]
gi|14194633|sp|Q9PQK9|DBH_UREPA RecName: Full=DNA-binding protein HU
gi|11356844|pir||H82909 DNA-binding protein Hu-alpha (HU-2) UU282 [imported] - Ureaplasma
urealyticum
gi|6899255|gb|AAF30691.1|AE002125_2 DNA-binding protein Hu-alpha (HU-2) [Ureaplasma parvum serovar 3
str. ATCC 700970]
gi|168827798|gb|ACA33060.1| DNA-binding protein HU [Ureaplasma parvum serovar 3 str. ATCC
27815]
gi|171902890|gb|EDT49179.1| DNA-binding protein HU [Ureaplasma parvum serovar 1 str. ATCC
27813]
gi|182675752|gb|EDT87657.1| DNA-binding protein HU [Ureaplasma parvum serovar 14 str. ATCC
33697]
gi|186700669|gb|EDU18951.1| DNA-binding protein HU [Ureaplasma parvum serovar 6 str. ATCC
27818]
Length = 130
Score = 62.1 bits (150), Expect = 3e-08, Method: Composition-based stats.
Identities = 21/98 (21%), Positives = 41/98 (41%), Gaps = 1/98 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
+S +I ++ K + + + ++ + L+ V + G F V RA R
Sbjct: 9 TRSQMIDELS-KMLNIEKKQTKAFMDTYEAFLILELSRAKEVRLGNIGKFKVSVRAERKG 67
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDSTLSN 99
P + + + EK +P F K +KE +N+ S +
Sbjct: 68 INPKTGETVIIPEKTIPKFTFTKGIKEIINAGISIDNE 105
>gi|282858819|ref|ZP_06267964.1| DNA-binding protein HU [Prevotella bivia JCVIHMP010]
gi|282588388|gb|EFB93548.1| DNA-binding protein HU [Prevotella bivia JCVIHMP010]
Length = 95
Score = 62.1 bits (150), Expect = 3e-08, Method: Composition-based stats.
Identities = 23/92 (25%), Positives = 44/92 (47%), Gaps = 1/92 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M I +A + ++ +K+V +L+E+ ++ G V+I GFG+F ++KR R+
Sbjct: 1 MNNKEFITKLASQT-GFTQEESQKMVTSVLKEIGKSFELGDPVQITGFGTFDIKKRMERV 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
P + V K+V F+ +K +
Sbjct: 60 MVNPATGLRMLVPPKLVLNFKPTSTIKTHIKK 91
>gi|160889558|ref|ZP_02070561.1| hypothetical protein BACUNI_01982 [Bacteroides uniformis ATCC
8492]
gi|270296682|ref|ZP_06202881.1| conserved hypothetical protein [Bacteroides sp. D20]
gi|317480050|ref|ZP_07939162.1| bacterial DNA-binding protein [Bacteroides sp. 4_1_36]
gi|156861075|gb|EDO54506.1| hypothetical protein BACUNI_01982 [Bacteroides uniformis ATCC
8492]
gi|270272669|gb|EFA18532.1| conserved hypothetical protein [Bacteroides sp. D20]
gi|316903792|gb|EFV25634.1| bacterial DNA-binding protein [Bacteroides sp. 4_1_36]
Length = 90
Score = 62.1 bits (150), Expect = 3e-08, Method: Composition-based stats.
Identities = 24/89 (26%), Positives = 48/89 (53%), Gaps = 1/89 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M ++++ +D ++V LL +MT+ L G + I+GFG+F V+K+A R+
Sbjct: 1 MNNKEFTSELSRRL-GYTLKDTSELVASLLADMTRQLEEGNIISIQGFGTFEVKKKAERI 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKER 89
+ P ++ + V K+V ++ LK++
Sbjct: 60 SVNPTTKQRMLVPPKLVLTYKPSTLLKDK 88
>gi|92117005|ref|YP_576734.1| histone-like DNA-binding protein [Nitrobacter hamburgensis X14]
gi|91799899|gb|ABE62274.1| histone-like DNA-binding protein [Nitrobacter hamburgensis X14]
Length = 99
Score = 62.1 bits (150), Expect = 3e-08, Method: Composition-based stats.
Identities = 22/96 (22%), Positives = 40/96 (41%), Gaps = 7/96 (7%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKR---A 57
M KS L+ I+ + L+ +DV+ ++ L + L G + GF F V K+
Sbjct: 5 MTKSQLVEKISAQ-AGLSKKDVKGVLEALATTGYKELKKTGAFLLPGFAKFVVIKKPATK 63
Query: 58 ARLARAPLAQKVIS---VEEKMVPFFRAGKNLKERL 90
AR P + ++ + + R K K+ +
Sbjct: 64 ARKGTNPFTGEPMTFKAKPARKIVRARPVKAAKDAV 99
>gi|282881456|ref|ZP_06290130.1| DNA-binding protein HU [Prevotella timonensis CRIS 5C-B1]
gi|281304682|gb|EFA96768.1| DNA-binding protein HU [Prevotella timonensis CRIS 5C-B1]
Length = 457
Score = 61.7 bits (149), Expect = 3e-08, Method: Composition-based stats.
Identities = 22/94 (23%), Positives = 48/94 (51%), Gaps = 2/94 (2%)
Query: 1 MIK-SSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAAR 59
MIK + L + +K +L ++ + + + ++ +T L + +V+I+G G+F V + R
Sbjct: 1 MIKLTDLAAVLVEK-AELTKREADFFIPLFIDVLTTGLKSDKQVKIKGLGTFKVTAVSPR 59
Query: 60 LARAPLAQKVISVEEKMVPFFRAGKNLKERLNSP 93
+ + I +E + F L++R+N+P
Sbjct: 60 ESVDVNTGERILIEGRDKISFTPEVALRDRVNAP 93
>gi|153806286|ref|ZP_01958954.1| hypothetical protein BACCAC_00542 [Bacteroides caccae ATCC 43185]
gi|149130963|gb|EDM22169.1| hypothetical protein BACCAC_00542 [Bacteroides caccae ATCC 43185]
Length = 92
Score = 61.7 bits (149), Expect = 3e-08, Method: Composition-based stats.
Identities = 24/89 (26%), Positives = 48/89 (53%), Gaps = 1/89 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M +A++ +D +++ LL +M Q L G + ++GFGSF V+K+A R+
Sbjct: 3 MNNKEFTSELAERL-GYTIKDTAELIGSLLSDMVQELEEGNVIAVQGFGSFEVKKKAERI 61
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKER 89
+ P +++ + V K+V ++ LK++
Sbjct: 62 SINPASKQRMLVPPKLVLSYKPSNTLKDK 90
>gi|167973131|ref|ZP_02555408.1| DNA-binding protein HU [Ureaplasma urealyticum serovar 5 str. ATCC
27817]
gi|167974791|ref|ZP_02557068.1| DNA-binding protein HU [Ureaplasma urealyticum serovar 11 str. ATCC
33695]
gi|167976046|ref|ZP_02558323.1| DNA-binding protein HU [Ureaplasma urealyticum serovar 12 str. ATCC
33696]
gi|167988544|ref|ZP_02570215.1| DNA-binding protein HU [Ureaplasma urealyticum serovar 7 str. ATCC
27819]
gi|168361961|ref|ZP_02695140.1| DNA-binding protein HU [Ureaplasma urealyticum serovar 13 str. ATCC
33698]
gi|195867588|ref|ZP_03079590.1| DNA-binding protein HU [Ureaplasma urealyticum serovar 9 str. ATCC
33175]
gi|198273620|ref|ZP_03206155.1| DNA-binding protein HU [Ureaplasma urealyticum serovar 4 str. ATCC
27816]
gi|209554305|ref|YP_002284683.1| DNA-binding protein HU [Ureaplasma urealyticum serovar 10 str. ATCC
33699]
gi|225550891|ref|ZP_03771840.1| DNA-binding protein HU [Ureaplasma urealyticum serovar 2 str. ATCC
27814]
gi|225551578|ref|ZP_03772524.1| DNA-binding protein HU [Ureaplasma urealyticum serovar 8 str. ATCC
27618]
gi|171903493|gb|EDT49782.1| DNA-binding protein HU [Ureaplasma urealyticum serovar 13 str. ATCC
33698]
gi|184209058|gb|EDU06101.1| DNA-binding protein HU [Ureaplasma urealyticum serovar 5 str. ATCC
27817]
gi|188018798|gb|EDU56838.1| DNA-binding protein HU [Ureaplasma urealyticum serovar 7 str. ATCC
27819]
gi|188997726|gb|EDU66823.1| DNA-binding protein HU [Ureaplasma urealyticum serovar 11 str. ATCC
33695]
gi|195659567|gb|EDX52947.1| DNA-binding protein HU [Ureaplasma urealyticum serovar 12 str. ATCC
33696]
gi|195660645|gb|EDX53900.1| DNA-binding protein HU [Ureaplasma urealyticum serovar 9 str. ATCC
33175]
gi|198249648|gb|EDY74429.1| DNA-binding protein HU [Ureaplasma urealyticum serovar 4 str. ATCC
27816]
gi|209541806|gb|ACI60035.1| DNA-binding protein HU [Ureaplasma urealyticum serovar 10 str. ATCC
33699]
gi|225379393|gb|EEH01758.1| DNA-binding protein HU [Ureaplasma urealyticum serovar 8 str. ATCC
27618]
gi|225380045|gb|EEH02407.1| DNA-binding protein HU [Ureaplasma urealyticum serovar 2 str. ATCC
27814]
Length = 131
Score = 61.7 bits (149), Expect = 3e-08, Method: Composition-based stats.
Identities = 20/99 (20%), Positives = 40/99 (40%), Gaps = 1/99 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
+ +I ++ K ++ + + ++ + L+ V G F V RA R
Sbjct: 9 TRVQMIDELS-KMLNIDKKQTKTFMDTYEAFLILELSRAKEVRFGNIGKFKVTVRAERKG 67
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDSTLSNS 100
P + + + EK +P F K +KE +N+ S +
Sbjct: 68 INPKTGETVIIPEKTIPKFTFTKGIKEIINAGISVEDET 106
>gi|189461333|ref|ZP_03010118.1| hypothetical protein BACCOP_01983 [Bacteroides coprocola DSM
17136]
gi|189431862|gb|EDV00847.1| hypothetical protein BACCOP_01983 [Bacteroides coprocola DSM
17136]
Length = 371
Score = 61.7 bits (149), Expect = 3e-08, Method: Composition-based stats.
Identities = 20/92 (21%), Positives = 43/92 (46%), Gaps = 1/92 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
+ L +A+++ ++N D E V L + +++ + V+I+G G+F + + AR +
Sbjct: 6 TQQDLADLLAQRH-EMNPADAEAFVRTLFALVEESVISDKYVKIKGLGTFKLIEVDARES 64
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLNSP 93
+ I + E F ++E +N P
Sbjct: 65 IDINTGERIEIREHSRISFTPDSTMRETVNKP 96
>gi|162146745|ref|YP_001601204.1| DNA-binding protein HU-alpha [Gluconacetobacter diazotrophicus
PAl 5]
gi|209543268|ref|YP_002275497.1| histone family protein DNA-binding protein [Gluconacetobacter
diazotrophicus PAl 5]
gi|161785320|emb|CAP54866.1| putative DNA-binding protein HU-alpha [Gluconacetobacter
diazotrophicus PAl 5]
gi|209530945|gb|ACI50882.1| histone family protein DNA-binding protein [Gluconacetobacter
diazotrophicus PAl 5]
Length = 89
Score = 61.7 bits (149), Expect = 3e-08, Method: Composition-based stats.
Identities = 20/90 (22%), Positives = 40/90 (44%), Gaps = 1/90 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ I + + + + + L+ + + + G + FG+F+V+K AR
Sbjct: 1 MSKA-FIAAVIQDSIDCTGVAANQAASDLIAAIVREMKKEGGFTLPSFGTFTVKKTKARK 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
A P + + V+ F+A NLK+ +
Sbjct: 60 ALNPRTGEPVKVKAGKTVRFKASPNLKKAV 89
>gi|320109312|ref|YP_004184902.1| histone family protein DNA-binding protein [Terriglobus saanensis
SP1PR4]
gi|319927833|gb|ADV84908.1| histone family protein DNA-binding protein [Terriglobus saanensis
SP1PR4]
Length = 98
Score = 61.7 bits (149), Expect = 3e-08, Method: Composition-based stats.
Identities = 24/90 (26%), Positives = 40/90 (44%), Gaps = 1/90 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
+ K++L+ T+A+K +L + + E + G I G G +R ARL
Sbjct: 5 ITKTALVRTLAEKL-ELTNKQSAAFFEAIAEIAVKETKKNGEFTIPGIGKLVKAERKARL 63
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P + I ++ K V FR K K+ +
Sbjct: 64 GRNPQTGETIKIKAKTVVKFRVAKAAKDAI 93
>gi|83319548|ref|YP_424760.1| DNA-binding protein HU [Mycoplasma capricolum subsp. capricolum
ATCC 27343]
gi|83283434|gb|ABC01366.1| DNA-binding protein HU [Mycoplasma capricolum subsp. capricolum
ATCC 27343]
Length = 208
Score = 61.7 bits (149), Expect = 3e-08, Method: Composition-based stats.
Identities = 21/93 (22%), Positives = 43/93 (46%), Gaps = 2/93 (2%)
Query: 2 IKSSLIGTIAK--KNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAAR 59
K L+ + + + ++ ++ I + ++ LA G V + FG F ++ A+
Sbjct: 116 TKGMLLEELYEDPEFVEMTKVSIKTIFDKAFIVASKNLAAGDHVVLAKFGKFETIEKEAQ 175
Query: 60 LARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
+ P Q+ I V V F+ K++KE++N
Sbjct: 176 MKMNPSTQEEIEVPAHKVVKFKLSKSIKEKMNK 208
>gi|42519971|ref|NP_965886.1| HU family DNA-binding protein [Wolbachia endosymbiont of Drosophila
melanogaster]
gi|225677276|ref|ZP_03788259.1| DNA-binding protein, HU family [Wolbachia endosymbiont of
Muscidifurax uniraptor]
gi|42409708|gb|AAS13820.1| DNA-binding protein, HU family [Wolbachia endosymbiont of
Drosophila melanogaster]
gi|225590696|gb|EEH11940.1| DNA-binding protein, HU family [Wolbachia endosymbiont of
Muscidifurax uniraptor]
Length = 101
Score = 61.7 bits (149), Expect = 3e-08, Method: Composition-based stats.
Identities = 21/81 (25%), Positives = 43/81 (53%)
Query: 12 KKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLARAPLAQKVIS 71
+ L+ +D I++ +L+E+ +L G V+I FG+F V+K+ R P + +
Sbjct: 21 NQEIGLSKEDSVSIIDDILDEIKTSLVKDGIVKISSFGTFLVKKKKERPGNIPNTSEKVM 80
Query: 72 VEEKMVPFFRAGKNLKERLNS 92
++ + FR K +K+ +N+
Sbjct: 81 IQARNSVSFRPSKIIKKSINN 101
>gi|253582857|ref|ZP_04860076.1| predicted protein [Fusobacterium varium ATCC 27725]
gi|251835291|gb|EES63833.1| predicted protein [Fusobacterium varium ATCC 27725]
Length = 90
Score = 61.7 bits (149), Expect = 3e-08, Method: Composition-based stats.
Identities = 22/87 (25%), Positives = 40/87 (45%), Gaps = 1/87 (1%)
Query: 1 MIKSSLIGTIAK-KNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAAR 59
M K L +K K++ + + +N+ + + +AL V G F + +R R
Sbjct: 1 MNKRELAKIYSKISQGKVSQKAALEEINIFTQTLQEALMKYDSVTFVNIGVFEILERKPR 60
Query: 60 LARAPLAQKVISVEEKMVPFFRAGKNL 86
L P ++++ + K V FRA KN+
Sbjct: 61 LVSNPSTREIMKIYPKKVVRFRASKNI 87
>gi|148259522|ref|YP_001233649.1| histone family protein DNA-binding protein [Acidiphilium cryptum
JF-5]
gi|326402729|ref|YP_004282810.1| histone-like DNA-binding protein [Acidiphilium multivorum AIU301]
gi|146401203|gb|ABQ29730.1| histone family protein DNA-binding protein [Acidiphilium cryptum
JF-5]
gi|325049590|dbj|BAJ79928.1| histone-like DNA-binding protein [Acidiphilium multivorum AIU301]
Length = 89
Score = 61.7 bits (149), Expect = 3e-08, Method: Composition-based stats.
Identities = 21/90 (23%), Positives = 41/90 (45%), Gaps = 1/90 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ I + + + + + ++E + + L G+ + FG+F+VRK AR
Sbjct: 1 MSKA-FITDVIQNSTGITGVAANRAATDVIEAIVKELKKKGKFTLPSFGTFTVRKTKARK 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
P + + I V+ F++ LK R+
Sbjct: 60 GVNPRSGEPIKVKAGKTVRFKSSPTLKTRV 89
>gi|303257412|ref|ZP_07343425.1| DNA-binding protein HU [Burkholderiales bacterium 1_1_47]
gi|331001348|ref|ZP_08324972.1| DNA-binding protein HU-alpha [Parasutterella excrementihominis
YIT 11859]
gi|302859769|gb|EFL82847.1| DNA-binding protein HU [Burkholderiales bacterium 1_1_47]
gi|329568607|gb|EGG50409.1| DNA-binding protein HU-alpha [Parasutterella excrementihominis
YIT 11859]
Length = 94
Score = 61.7 bits (149), Expect = 4e-08, Method: Composition-based stats.
Identities = 23/95 (24%), Positives = 45/95 (47%), Gaps = 1/95 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K LI + ++ + +N ++ + ++ NG V + GFG+F KR AR+
Sbjct: 1 MNKQQLIEI-IAEENEITKDMATRTLNTMIRSIMTSVKNGEPVVLVGFGTFRQVKRKARV 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDS 95
P + + ++ + VP F G K+ ++ +S
Sbjct: 60 ICNPHTGEKLELKPRSVPKFVPGTLFKQIVDEQNS 94
>gi|254819110|ref|ZP_05224111.1| DNA-binding protein HU [Mycobacterium intracellulare ATCC 13950]
Length = 207
Score = 61.3 bits (148), Expect = 4e-08, Method: Composition-based stats.
Identities = 24/75 (32%), Positives = 38/75 (50%)
Query: 16 KLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLARAPLAQKVISVEEK 75
+ + V +++ + +A+ G V I GFG F R+RAAR+AR P + + V+
Sbjct: 7 NTDRRQATAAVENVVDTIVRAVHKGDSVTITGFGVFEQRRRAARVARNPRTGETVKVKPT 66
Query: 76 MVPFFRAGKNLKERL 90
VP FR G K +
Sbjct: 67 SVPAFRPGAQFKAVV 81
>gi|256829419|ref|YP_003158147.1| histone family protein DNA-binding protein [Desulfomicrobium
baculatum DSM 4028]
gi|256578595|gb|ACU89731.1| histone family protein DNA-binding protein [Desulfomicrobium
baculatum DSM 4028]
Length = 101
Score = 61.3 bits (148), Expect = 4e-08, Method: Composition-based stats.
Identities = 23/92 (25%), Positives = 47/92 (51%), Gaps = 9/92 (9%)
Query: 3 KSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLAR 62
K+ LI + + + ++ E++V+ ++E +T++L+ G ++ + G G+ +V +R+ R
Sbjct: 12 KADLIARLKAEM-GYSEEEAERVVDAMMESITESLSKGDKINLPGIGTMAVVERSLRKGE 70
Query: 63 APLAQKVISVEEKMVPFFRAGKNLKERLNSPD 94
+ I F GK LK+ L S D
Sbjct: 71 DHSTGRDI--------KFSPGKRLKDALTSLD 94
>gi|294675806|ref|YP_003576421.1| DNA-binding protein HU [Rhodobacter capsulatus SB 1003]
gi|294474626|gb|ADE84014.1| DNA-binding protein HU-1 [Rhodobacter capsulatus SB 1003]
Length = 95
Score = 61.3 bits (148), Expect = 4e-08, Method: Composition-based stats.
Identities = 20/91 (21%), Positives = 39/91 (42%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ L+ +A+ + + ++ + + +T+ +A GG V + G G S + R R
Sbjct: 5 MTKTQLVAALAEAM-GSDKKTATAAIDAIADVVTKEVAAGGSVTLPGIGKVSCKARPERQ 63
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + + K LK+ +N
Sbjct: 64 VRNPATGETMMKPADKQVKVTIAKALKDSVN 94
>gi|221054358|ref|XP_002258318.1| hypothetical protein, conserved in Plasmodium species [Plasmodium
knowlesi strain H]
gi|193808387|emb|CAQ39090.1| hypothetical protein, conserved in Plasmodium species [Plasmodium
knowlesi strain H]
Length = 188
Score = 61.3 bits (148), Expect = 4e-08, Method: Composition-based stats.
Identities = 20/98 (20%), Positives = 46/98 (46%), Gaps = 3/98 (3%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
+ K +I ++ + + + + VEKI+N + + + + L N ++ I FG + R R
Sbjct: 58 ITKKQIIEEVSMETKE-SKKTVEKIMNGIFDNIYKHLENNEKIYIHKFGMYYNIFRKKRC 116
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKE--RLNSPDST 96
+ ++ I +E +P F+ K ++ ++N
Sbjct: 117 IKNMRTKEDIHIESSHMPHFKFSKIFRDLIKVNVKAKK 154
>gi|253583307|ref|ZP_04860505.1| predicted protein [Fusobacterium varium ATCC 27725]
gi|251833879|gb|EES62442.1| predicted protein [Fusobacterium varium ATCC 27725]
Length = 89
Score = 61.3 bits (148), Expect = 4e-08, Method: Composition-based stats.
Identities = 22/89 (24%), Positives = 39/89 (43%), Gaps = 1/89 (1%)
Query: 1 MIKSSLIGTIAK-KNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAAR 59
M K L K++ + + +N+ + + +AL V G F + +R R
Sbjct: 1 MNKRELARIYNTISQGKISQKAALEEINIFTQTLQEALMKYDSVTFVNIGIFEILERKPR 60
Query: 60 LARAPLAQKVISVEEKMVPFFRAGKNLKE 88
L P ++++ + K V FRA KNL +
Sbjct: 61 LVSNPSTREIMKIYPKKVVRFRASKNLIK 89
>gi|85057490|ref|YP_456406.1| DNA-binding protein HU [Aster yellows witches'-broom phytoplasma
AYWB]
gi|84789595|gb|ABC65327.1| DNA-binding protein HU [Aster yellows witches'-broom phytoplasma
AYWB]
Length = 96
Score = 61.3 bits (148), Expect = 4e-08, Method: Composition-based stats.
Identities = 22/92 (23%), Positives = 41/92 (44%), Gaps = 2/92 (2%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQAL-ANGGRVEIRGFGSFSVRKRAAR 59
M K LI IA+ N K + E+ + + +++ +N + G F ++ R A
Sbjct: 1 MTKKELIKKIAEVN-KTSISKTEEFYHSFEHTLIESITSNEEVILSSKIGKFILKTRKAY 59
Query: 60 LARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P K + + K V F+ K +K+++
Sbjct: 60 TGRNPQTGKKLKIPAKTVVSFKLSKTIKDKVK 91
>gi|189425695|ref|YP_001952872.1| histone family protein DNA-binding protein [Geobacter lovleyi SZ]
gi|189421954|gb|ACD96352.1| histone family protein DNA-binding protein [Geobacter lovleyi SZ]
Length = 96
Score = 61.3 bits (148), Expect = 4e-08, Method: Composition-based stats.
Identities = 28/88 (31%), Positives = 39/88 (44%), Gaps = 1/88 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ L+ +A + + EK + AL G +V + GFG+FS R AR
Sbjct: 1 MKKADLVAKMAT-DAGITKAQAEKALAAFTAATEAALKAGDKVTLVGFGTFSTISRKART 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKE 88
R P K I + K F GK LK+
Sbjct: 60 GRNPQTGKEIKIAAKTSAKFSPGKGLKD 87
>gi|167763389|ref|ZP_02435516.1| hypothetical protein BACSTE_01763 [Bacteroides stercoris ATCC
43183]
gi|167698683|gb|EDS15262.1| hypothetical protein BACSTE_01763 [Bacteroides stercoris ATCC
43183]
Length = 109
Score = 61.3 bits (148), Expect = 5e-08, Method: Composition-based stats.
Identities = 26/92 (28%), Positives = 43/92 (46%), Gaps = 1/92 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ ++ I KN ++ V V ++ + +L+ V +RGFGSF V+KRA +
Sbjct: 19 MTKADIVNEI-TKNTGIDKVTVLATVEAFMDAVKASLSKDENVYLRGFGSFVVKKRAQKT 77
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
AR I + E +P F+ K +
Sbjct: 78 ARNISKNTTIIIPEHNIPAFKPAKTFTIAVKK 109
>gi|197294495|ref|YP_001799036.1| DNA-binding protein HU [Candidatus Phytoplasma australiense]
gi|171853822|emb|CAM11766.1| DNA-binding protein HU [Candidatus Phytoplasma australiense]
Length = 96
Score = 60.9 bits (147), Expect = 5e-08, Method: Composition-based stats.
Identities = 23/95 (24%), Positives = 38/95 (40%), Gaps = 2/95 (2%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEI-RGFGSFSVRKRAAR 59
M K LI +A N + + N + +A+ + V I G F ++ R A
Sbjct: 1 MTKKELIKNLAVMN-NTSVTQTQDFYNSFENALIEAIKSNEEVIISPKIGKFILKSRKAH 59
Query: 60 LARAPLAQKVISVEEKMVPFFRAGKNLKERLNSPD 94
R P K + + K V F+ K LK+ + +
Sbjct: 60 KGRNPQTGKKLKIPAKTVVNFKLSKTLKDEVKNLK 94
>gi|254511061|ref|ZP_05123128.1| DNA-binding protein HU [Rhodobacteraceae bacterium KLH11]
gi|221534772|gb|EEE37760.1| DNA-binding protein HU [Rhodobacteraceae bacterium KLH11]
Length = 78
Score = 60.9 bits (147), Expect = 5e-08, Method: Composition-based stats.
Identities = 17/76 (22%), Positives = 31/76 (40%)
Query: 16 KLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLARAPLAQKVISVEEK 75
+ + + + +T+ ++ GG V + G G R+R R+ R P + E
Sbjct: 2 GTDKKSANAALEAMTGLITREVSAGGAVTLPGVGKIYCRERPERMVRNPATGEQFKKEAD 61
Query: 76 MVPFFRAGKNLKERLN 91
V K LK+ +N
Sbjct: 62 KVVKMTIAKALKDSVN 77
>gi|253583929|ref|ZP_04861127.1| predicted protein [Fusobacterium varium ATCC 27725]
gi|251834501|gb|EES63064.1| predicted protein [Fusobacterium varium ATCC 27725]
Length = 95
Score = 60.9 bits (147), Expect = 5e-08, Method: Composition-based stats.
Identities = 20/87 (22%), Positives = 38/87 (43%), Gaps = 1/87 (1%)
Query: 1 MIKSSLIGTIAK-KNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAAR 59
M K L K++ + + +++ + + +AL V G F + +R R
Sbjct: 6 MNKRELARIYNTISQGKISQKAALEEIDIFTQTLQEALMKYDSVTFVNIGIFEILERKPR 65
Query: 60 LARAPLAQKVISVEEKMVPFFRAGKNL 86
L P ++++ + K V FRA KN+
Sbjct: 66 LVSNPSTREIMKIYPKKVVRFRASKNI 92
>gi|68077087|ref|XP_680463.1| hypothetical protein [Plasmodium berghei strain ANKA]
gi|56501398|emb|CAH98113.1| conserved hypothetical protein [Plasmodium berghei]
Length = 187
Score = 60.9 bits (147), Expect = 5e-08, Method: Composition-based stats.
Identities = 21/90 (23%), Positives = 43/90 (47%), Gaps = 1/90 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K +I ++ + + + + VEKI+N + + + + L N ++ I FG + R R
Sbjct: 58 TKKQIIEEVSMETKE-SKKTVEKIMNGIFDNIYKHLENNEKIYIHKFGMYYNIFRKKRYI 116
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
+ ++ I +E VP F+ K K+ +
Sbjct: 117 KNMRTKEDIEIESSHVPHFKFSKIFKDMIK 146
>gi|253565663|ref|ZP_04843118.1| DNA-binding protein HU [Bacteroides sp. 3_2_5]
gi|251945942|gb|EES86349.1| DNA-binding protein HU [Bacteroides sp. 3_2_5]
Length = 96
Score = 60.9 bits (147), Expect = 5e-08, Method: Composition-based stats.
Identities = 24/92 (26%), Positives = 45/92 (48%), Gaps = 1/92 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M ++++ E ++ LL ++TQ L G + I+GFG+F V+K+A R+
Sbjct: 1 MNNKEFTSELSRRLGYNTKYTSE-LITSLLSDITQELQEGNAIGIQGFGTFEVKKKAERI 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
P+ + + V K+V F+ LK++
Sbjct: 60 VINPVTKLRLLVPPKLVLAFKPSPILKDKFKE 91
>gi|197294327|ref|YP_001798868.1| DNA-binding protein HU [Candidatus Phytoplasma australiense]
gi|197294355|ref|YP_001798896.1| DNA-binding protein HU [Candidatus Phytoplasma australiense]
gi|197294406|ref|YP_001798947.1| DNA-binding protein HU [Candidatus Phytoplasma australiense]
gi|197294488|ref|YP_001799029.1| DNA-binding protein HU [Candidatus Phytoplasma australiense]
gi|197294819|ref|YP_001799360.1| DNA-binding protein HU [Candidatus Phytoplasma australiense]
gi|171853654|emb|CAM11533.1| DNA-binding protein HU [Candidatus Phytoplasma australiense]
gi|171853682|emb|CAM11565.1| DNA-binding protein HU [Candidatus Phytoplasma australiense]
gi|171853733|emb|CAM11656.1| DNA-binding protein HU [Candidatus Phytoplasma australiense]
gi|171853815|emb|CAM11756.1| DNA-binding protein HU [Candidatus Phytoplasma australiense]
gi|171854146|emb|CAM12138.1| DNA-binding protein HU [Candidatus Phytoplasma australiense]
Length = 96
Score = 60.9 bits (147), Expect = 5e-08, Method: Composition-based stats.
Identities = 24/95 (25%), Positives = 38/95 (40%), Gaps = 2/95 (2%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEI-RGFGSFSVRKRAAR 59
M K LI IA N + + N + +A+ + V I G F ++ R A
Sbjct: 1 MTKKELIKNIAVMN-NTSVTQTQDFYNSFENALIEAITSNEEVIISPKIGKFILKSRKAH 59
Query: 60 LARAPLAQKVISVEEKMVPFFRAGKNLKERLNSPD 94
R P K + + K V F+ K LK+ + +
Sbjct: 60 KGRNPQTGKKLKIPAKTVVNFKLSKTLKDEVKNLK 94
>gi|261749189|ref|YP_003256874.1| DNA-binding protein HU [Blattabacterium sp. (Periplaneta
americana) str. BPLAN]
gi|261497281|gb|ACX83731.1| DNA-binding protein HU [Blattabacterium sp. (Periplaneta
americana) str. BPLAN]
Length = 97
Score = 60.9 bits (147), Expect = 6e-08, Method: Composition-based stats.
Identities = 25/93 (26%), Positives = 45/93 (48%), Gaps = 1/93 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ +I I + D +K++ ++++ Q+L +G V +RGFGSF ++ RA +L
Sbjct: 1 MTKADIITEIISET-GSERIDTQKVIETFMKKIKQSLTSGENVYLRGFGSFIIKYRAKKL 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSP 93
R I + +P F+ K E +
Sbjct: 60 GRHISKDMSIVIPAHNIPAFKPAKAFTELVKKN 92
>gi|99034453|ref|ZP_01314451.1| hypothetical protein Wendoof_01000745 [Wolbachia endosymbiont of
Drosophila willistoni TSC#14030-0811.24]
Length = 101
Score = 60.9 bits (147), Expect = 6e-08, Method: Composition-based stats.
Identities = 21/81 (25%), Positives = 43/81 (53%)
Query: 12 KKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLARAPLAQKVIS 71
+ L+ +D I++ +L+E+ +L G V+I FG+F V+K+ R P + +
Sbjct: 21 NQEIGLSKEDYVSIIDDILDEIKTSLVKDGIVKISSFGTFLVKKKKERPGNIPNTSEKVM 80
Query: 72 VEEKMVPFFRAGKNLKERLNS 92
++ + FR K +K+ +N+
Sbjct: 81 IQARNSVSFRPSKIIKKSINN 101
>gi|330995080|ref|ZP_08318997.1| putative DNA-binding protein HU [Paraprevotella xylaniphila YIT
11841]
gi|332879536|ref|ZP_08447231.1| putative DNA-binding protein HU [Capnocytophaga sp. oral taxon
329 str. F0087]
gi|329576656|gb|EGG58159.1| putative DNA-binding protein HU [Paraprevotella xylaniphila YIT
11841]
gi|332682502|gb|EGJ55404.1| putative DNA-binding protein HU [Capnocytophaga sp. oral taxon
329 str. F0087]
Length = 92
Score = 60.9 bits (147), Expect = 6e-08, Method: Composition-based stats.
Identities = 26/93 (27%), Positives = 46/93 (49%), Gaps = 2/93 (2%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALA-NGGRVEIRGFGSFSVRKRAAR 59
M K+ ++ I+KK ++ V V +E + ++L V +RGFGSF ++KRA +
Sbjct: 1 MTKAEIVNEISKKT-GIDKATVLTAVEAFMESVKESLIQKEDNVYLRGFGSFILKKRAKK 59
Query: 60 LARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
AR I ++E +P F+ K + +
Sbjct: 60 TARNISKNTTIIIDEHNIPAFKPAKVFVDAIKK 92
>gi|257470369|ref|ZP_05634460.1| hypothetical protein FulcA4_13577 [Fusobacterium ulcerans ATCC
49185]
Length = 94
Score = 60.9 bits (147), Expect = 6e-08, Method: Composition-based stats.
Identities = 23/94 (24%), Positives = 42/94 (44%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K L+ K+ N +D +N +E + +A+ G V+ G F + R ++
Sbjct: 1 MNKKDLVKIYKDKSKMENARDALADINDFIETLKKAILKDGTVKFHDNGIFEILVRKPKV 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSPD 94
P +++I++ K FR K KE +N+
Sbjct: 61 ISNPSTRELITIYPKKTVRFRMSKGTKEGMNNKK 94
>gi|39939049|ref|NP_950815.1| nucleoid DNA-binding protein [Onion yellows phytoplasma OY-M]
gi|39722158|dbj|BAD04648.1| bacterial nucleoid DNA-binding protein [Onion yellows phytoplasma
OY-M]
Length = 96
Score = 60.9 bits (147), Expect = 6e-08, Method: Composition-based stats.
Identities = 20/92 (21%), Positives = 40/92 (43%), Gaps = 2/92 (2%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGR-VEIRGFGSFSVRKRAAR 59
M K LI IA+ N K + E+ N + +++ + + G F ++ R A
Sbjct: 1 MTKKELIKNIAEAN-KTSISKTEEFYNSFEHTLIESITSNEEVILSSKIGKFILKTRKAY 59
Query: 60 LARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + + + K V F+ + +K+++
Sbjct: 60 TGRNPQTGQKLKISAKTVVSFKLSQTIKDKVK 91
>gi|32474163|ref|NP_867157.1| DNA-binding protein HU [Rhodopirellula baltica SH 1]
gi|32444700|emb|CAD74702.1| probable DNA-binding protein HU [Rhodopirellula baltica SH 1]
gi|327537506|gb|EGF24228.1| DNA-binding protein HU [Rhodopirellula baltica WH47]
Length = 105
Score = 60.9 bits (147), Expect = 6e-08, Method: Composition-based stats.
Identities = 24/97 (24%), Positives = 41/97 (42%), Gaps = 9/97 (9%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANG--GRVEIRGFGSFSVRKRAA- 58
K+ +I IA++ +L +DV +++ L E+ ++L G G+ I G ++ A
Sbjct: 10 TKTQIIANIAEET-ELTKKDVAAVLDSLAAEIEKSLQKGGPGQFAIPGLCKIVLKDVPAK 68
Query: 59 --RLARAPLAQKVI---SVEEKMVPFFRAGKNLKERL 90
R R P + I R K LKE +
Sbjct: 69 PKRKGRNPANGEEIWLAPKPASKKLTIRPLKGLKEMI 105
>gi|323345437|ref|ZP_08085660.1| DNA-binding protein HU [Prevotella oralis ATCC 33269]
gi|323093551|gb|EFZ36129.1| DNA-binding protein HU [Prevotella oralis ATCC 33269]
Length = 129
Score = 60.9 bits (147), Expect = 6e-08, Method: Composition-based stats.
Identities = 24/93 (25%), Positives = 48/93 (51%), Gaps = 2/93 (2%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQAL-ANGGRVEIRGFGSFSVRKRAAR 59
M K+ +I IA + ++V ++ + + ++L V +RGFGSF ++ RAA+
Sbjct: 38 MTKADIINEIANST-GMQKKEVAVVIESFMSTVKESLLKRKENVYLRGFGSFIIKHRAAK 96
Query: 60 LARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
AR L +++E +P F+ K+ + + +
Sbjct: 97 TARNILKNTTMTIEAHDLPSFKPAKSFIDEMKA 129
>gi|156097106|ref|XP_001614586.1| hypothetical protein [Plasmodium vivax SaI-1]
gi|148803460|gb|EDL44859.1| hypothetical protein, conserved [Plasmodium vivax]
Length = 188
Score = 60.9 bits (147), Expect = 6e-08, Method: Composition-based stats.
Identities = 19/91 (20%), Positives = 44/91 (48%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
+ K +I ++ + + + + VEKI+N + + + + L N ++ I FG + R R
Sbjct: 58 ITKKQIIEEVSMETKE-SKKTVEKIMNGIFDNIYKHLENNEKIYIHKFGMYYNIFRKKRC 116
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
+ ++ I +E +P F+ K ++ +
Sbjct: 117 IKNMRTKEDIHIESSHMPHFKFSKIFRDLIK 147
>gi|58698807|ref|ZP_00373686.1| DNA-binding protein, HU family [Wolbachia endosymbiont of
Drosophila ananassae]
gi|58534682|gb|EAL58802.1| DNA-binding protein, HU family [Wolbachia endosymbiont of
Drosophila ananassae]
Length = 115
Score = 60.9 bits (147), Expect = 6e-08, Method: Composition-based stats.
Identities = 21/77 (27%), Positives = 40/77 (51%)
Query: 12 KKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLARAPLAQKVIS 71
+ L+ +D I++ +L+E+ +LA G V+I FG+F V+K+ R P + +
Sbjct: 21 NQEIGLSKEDSASIIDDILDEIKTSLAKDGIVKISSFGTFLVKKKKERPGNIPNTSEKVM 80
Query: 72 VEEKMVPFFRAGKNLKE 88
++ + FR K +K
Sbjct: 81 IQARNSVSFRPSKIIKN 97
>gi|145629383|ref|ZP_01785181.1| integration host factor alpha-subunit [Haemophilus influenzae
22.1-21]
gi|144978226|gb|EDJ87990.1| integration host factor alpha-subunit [Haemophilus influenzae
22.1-21]
Length = 91
Score = 60.9 bits (147), Expect = 6e-08, Method: Composition-based stats.
Identities = 21/65 (32%), Positives = 38/65 (58%), Gaps = 1/65 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
+ K +I ++ K L+ QD + +V LEE+ +L +G V++ GFG+F +R +++R
Sbjct: 4 ITKLDIIEYLSDKY-HLSKQDTKNVVENFLEEIRSSLESGQDVKLSGFGNFELRDKSSRP 62
Query: 61 ARAPL 65
R P
Sbjct: 63 GRNPK 67
>gi|330952801|gb|EGH53061.1| nucleoid protein HU beta subunit [Pseudomonas syringae Cit 7]
Length = 51
Score = 60.9 bits (147), Expect = 6e-08, Method: Composition-based stats.
Identities = 20/44 (45%), Positives = 26/44 (59%)
Query: 48 FGSFSVRKRAARLARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
FG+FSV R AR+ R P K + + P F+AGK LKE +N
Sbjct: 8 FGTFSVTDRPARIGRNPQTGKTLEIAAAKKPGFKAGKALKEAVN 51
>gi|317064578|ref|ZP_07929063.1| predicted protein [Fusobacterium ulcerans ATCC 49185]
gi|313690254|gb|EFS27089.1| predicted protein [Fusobacterium ulcerans ATCC 49185]
Length = 100
Score = 60.9 bits (147), Expect = 6e-08, Method: Composition-based stats.
Identities = 23/94 (24%), Positives = 42/94 (44%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K L+ K+ N +D +N +E + +A+ G V+ G F + R ++
Sbjct: 7 MNKKDLVKIYKDKSKMENARDALADINDFIETLKKAILKDGTVKFHDNGIFEILVRKPKV 66
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSPD 94
P +++I++ K FR K KE +N+
Sbjct: 67 ISNPSTRELITIYPKKTVRFRMSKGTKEGMNNKK 100
>gi|322836844|ref|YP_004210758.1| histone family protein DNA-binding protein [Acidobacterium sp.
MP5ACTX9]
gi|321165931|gb|ADW71631.1| histone family protein DNA-binding protein [Acidobacterium sp.
MP5ACTX9]
Length = 125
Score = 60.6 bits (146), Expect = 6e-08, Method: Composition-based stats.
Identities = 22/86 (25%), Positives = 37/86 (43%), Gaps = 1/86 (1%)
Query: 5 SLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLARAP 64
L+ +A+K +L+ + ++L Q G I G G +RAAR+ R P
Sbjct: 37 ELVKLVAEKM-ELSLKQSAAFFDLLASTAIQETKKNGEFTIPGLGKLVKAQRAARIGRNP 95
Query: 65 LAQKVISVEEKMVPFFRAGKNLKERL 90
+ I ++ K FR K K+ +
Sbjct: 96 QTGESIKIKAKTAVKFRVAKAAKDMI 121
>gi|332638320|ref|ZP_08417183.1| DNA-binding protein hu [Weissella cibaria KACC 11862]
Length = 92
Score = 60.6 bits (146), Expect = 6e-08, Method: Composition-based stats.
Identities = 35/90 (38%), Positives = 49/90 (54%), Gaps = 1/90 (1%)
Query: 3 KSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLAR 62
K+ LI +A K + + K VN LL+ + LA G +V + GFG+F VR+RAAR R
Sbjct: 4 KTELIDLVAAKTGQ-AKSETTKTVNALLDVIKDQLAQGEKVALVGFGTFEVRERAARKGR 62
Query: 63 APLAQKVISVEEKMVPFFRAGKNLKERLNS 92
P I + P F+AGK+ KE +N
Sbjct: 63 NPQTGAEIEIAAAKAPAFKAGKDFKEAVNK 92
>gi|313203645|ref|YP_004042302.1| histone family protein DNA-binding protein [Paludibacter
propionicigenes WB4]
gi|312442961|gb|ADQ79317.1| histone family protein DNA-binding protein [Paludibacter
propionicigenes WB4]
Length = 96
Score = 60.6 bits (146), Expect = 7e-08, Method: Composition-based stats.
Identities = 24/91 (26%), Positives = 41/91 (45%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M LI ++A K V +++ + T+ L + + FG+F +RK+ RL
Sbjct: 1 MNHKELIASMAAKL-NAPKSVVADLLDTTVTTCTELLVENKTIGFQSFGNFEIRKKEERL 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
+ P Q + K+V F+ LKE+L
Sbjct: 60 SVHPSTQVRTLIPPKLVVNFKQSNILKEKLK 90
>gi|75675396|ref|YP_317817.1| histone-like DNA-binding protein [Nitrobacter winogradskyi
Nb-255]
gi|74420266|gb|ABA04465.1| histone-like DNA-binding protein [Nitrobacter winogradskyi
Nb-255]
Length = 99
Score = 60.6 bits (146), Expect = 7e-08, Method: Composition-based stats.
Identities = 22/96 (22%), Positives = 40/96 (41%), Gaps = 7/96 (7%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKR---A 57
M KS L+ I+ + L+ +DV+ ++ L + L G + GF F V K+
Sbjct: 5 MTKSQLVEKISTQ-VGLSKKDVKGVLEALATTGYKELKKTGAFLLPGFAKFVVIKKPATK 63
Query: 58 ARLARAPLAQKVIS---VEEKMVPFFRAGKNLKERL 90
AR P + ++ + + R K K+ +
Sbjct: 64 ARKGTNPFTGEPMTFKAKPARKIVRARPVKAAKDAV 99
>gi|209884160|ref|YP_002288017.1| histone family protein DNA-binding protein [Oligotropha
carboxidovorans OM5]
gi|209872356|gb|ACI92152.1| histone family protein DNA-binding protein [Oligotropha
carboxidovorans OM5]
Length = 99
Score = 60.6 bits (146), Expect = 7e-08, Method: Composition-based stats.
Identities = 24/96 (25%), Positives = 41/96 (42%), Gaps = 7/96 (7%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKR---A 57
M KS LI IA+ +L+ +DV+ ++ L + L G + GF F V K+
Sbjct: 5 MTKSQLIEKIAE-TNELSKRDVKGVLESLATLGYKELKKNGVFLVPGFAKFVVIKKPATK 63
Query: 58 ARLARAPLAQKVIS---VEEKMVPFFRAGKNLKERL 90
AR P + ++ + + R K K+ +
Sbjct: 64 ARKGTNPFTGEPMTFKAKPARKIVRARPVKAAKDAV 99
>gi|223935064|ref|ZP_03626983.1| histone family protein DNA-binding protein [bacterium Ellin514]
gi|223896517|gb|EEF62959.1| histone family protein DNA-binding protein [bacterium Ellin514]
Length = 96
Score = 60.6 bits (146), Expect = 7e-08, Method: Composition-based stats.
Identities = 26/88 (29%), Positives = 40/88 (45%), Gaps = 3/88 (3%)
Query: 3 KSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLAR 62
KS L IA+KN ++ + +I++ L E + N I G G + R AR+ R
Sbjct: 7 KSQLAAEIAEKN-QITKKQAVEILDHLAELAYKNAKN--TFTIPGLGKLVLVNRKARMGR 63
Query: 63 APLAQKVISVEEKMVPFFRAGKNLKERL 90
P + I + K V FR K K+ +
Sbjct: 64 NPATGETIKIAAKRVVKFRVAKAAKDAI 91
>gi|75812751|ref|YP_320368.1| histone-like DNA-binding protein [Anabaena variabilis ATCC 29413]
gi|75705507|gb|ABA25179.1| Histone-like DNA-binding protein [Anabaena variabilis ATCC 29413]
Length = 80
Score = 60.6 bits (146), Expect = 7e-08, Method: Composition-based stats.
Identities = 22/69 (31%), Positives = 35/69 (50%), Gaps = 7/69 (10%)
Query: 29 LLEEMTQALANGGRVEIRGFGSFSVRKRA-------ARLARAPLAQKVISVEEKMVPFFR 81
+ +T+A+ANG +V + GFGSF R R R P + I++ +P F
Sbjct: 10 ITTTVTEAVANGDKVTLVGFGSFERRDHEVCRRYRSEREGRNPQTNEKITIPATKIPAFS 69
Query: 82 AGKNLKERL 90
AGK +E++
Sbjct: 70 AGKQFREKV 78
>gi|182676999|ref|YP_001831146.1| histone family protein DNA-binding protein [Beijerinckia indica
subsp. indica ATCC 9039]
gi|182636629|gb|ACB97402.1| histone family protein DNA-binding protein [Beijerinckia indica
subsp. indica ATCC 9039]
Length = 114
Score = 60.6 bits (146), Expect = 8e-08, Method: Composition-based stats.
Identities = 22/75 (29%), Positives = 40/75 (53%)
Query: 16 KLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLARAPLAQKVISVEEK 75
L + VE + + ++E + + L G ++ I G G F V+KRA+R R P + + ++
Sbjct: 40 DLPKKTVESLFDDMVELVGKHLKKGSKIRISGLGIFQVKKRASRQGRNPATGEAMKIKAS 99
Query: 76 MVPFFRAGKNLKERL 90
F+ ++LKE L
Sbjct: 100 KTVGFKIARDLKESL 114
>gi|88596497|ref|ZP_01099734.1| DNA-binding protein HU [Campylobacter jejuni subsp. jejuni 84-25]
gi|88191338|gb|EAQ95310.1| DNA-binding protein HU [Campylobacter jejuni subsp. jejuni 84-25]
Length = 61
Score = 60.2 bits (145), Expect = 8e-08, Method: Composition-based stats.
Identities = 21/62 (33%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ I +A + L +D + ++ +T LA G + GFG+FS ++RAAR
Sbjct: 1 MTKADFISLVA-QTAGLTKKDATTATDAVISTITDVLAKGDSISFIGFGTFSTQERAARE 59
Query: 61 AR 62
AR
Sbjct: 60 AR 61
>gi|299133418|ref|ZP_07026613.1| histone family protein DNA-binding protein [Afipia sp. 1NLS2]
gi|298593555|gb|EFI53755.1| histone family protein DNA-binding protein [Afipia sp. 1NLS2]
Length = 99
Score = 60.2 bits (145), Expect = 8e-08, Method: Composition-based stats.
Identities = 25/96 (26%), Positives = 41/96 (42%), Gaps = 7/96 (7%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKR---A 57
M KS LI IA+ N +L+ +DV+ + L + L G + GF F V K+
Sbjct: 5 MTKSQLIEKIAEAN-ELSKRDVKGVFESLATIGYKELKKNGTFLLPGFAKFVVIKKPATK 63
Query: 58 ARLARAPLAQKVIS---VEEKMVPFFRAGKNLKERL 90
AR P + ++ + + R K K+ +
Sbjct: 64 ARKGTNPFTGEPMTFKAKPARKIVRARPVKAAKDAV 99
>gi|253565662|ref|ZP_04843117.1| conserved hypothetical protein [Bacteroides sp. 3_2_5]
gi|251945941|gb|EES86348.1| conserved hypothetical protein [Bacteroides sp. 3_2_5]
Length = 483
Score = 60.2 bits (145), Expect = 9e-08, Method: Composition-based stats.
Identities = 19/90 (21%), Positives = 41/90 (45%), Gaps = 1/90 (1%)
Query: 4 SSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLARA 63
L+ + ++ +++ +D + V + QAL V+I+G G+F + +R +
Sbjct: 8 QDLVELLVNRH-EVSQEDADVFVREFFLLIEQALDADQYVKIKGLGTFKLIGVNSRESVN 66
Query: 64 PLAQKVISVEEKMVPFFRAGKNLKERLNSP 93
+ I +EE F +L++ +N P
Sbjct: 67 VNTGERIKIEEHTKISFTPDPSLRDIINRP 96
>gi|257485822|ref|ZP_05639863.1| single-stranded binding protein [Pseudomonas syringae pv. tabaci
ATCC 11528]
gi|331013726|gb|EGH93782.1| single-stranded binding protein [Pseudomonas syringae pv. tabaci
ATCC 11528]
Length = 104
Score = 60.2 bits (145), Expect = 9e-08, Method: Composition-based stats.
Identities = 23/98 (23%), Positives = 35/98 (35%), Gaps = 1/98 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K L+ IA+ K + L + + L +G + + G G V +R AR
Sbjct: 4 TKDQLVAGIAEAI-DAPKTTARKALEQLGQIVADQLESGAEITLPGIGKLKVAERPARTG 62
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDSTLSN 99
R P I + K F K L + +N S
Sbjct: 63 RNPSTGAAIEIAAKKAIKFVPAKVLNDSINKGSPQNSE 100
>gi|119494127|ref|ZP_01624637.1| Histone-like DNA-binding protein [Lyngbya sp. PCC 8106]
gi|119452166|gb|EAW33370.1| Histone-like DNA-binding protein [Lyngbya sp. PCC 8106]
Length = 177
Score = 60.2 bits (145), Expect = 9e-08, Method: Composition-based stats.
Identities = 19/89 (21%), Positives = 41/89 (46%)
Query: 12 KKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLARAPLAQKVIS 71
+ + + V+ +V+ L++ + L +G V+I FG F ++ +R +R P + I
Sbjct: 7 QNSTGFSEATVQAVVDSLIKFVQLELRSGNEVKIPDFGVFYPKELGSRPSRNPRTGESII 66
Query: 72 VEEKMVPFFRAGKNLKERLNSPDSTLSNS 100
+ K P FR + ++ + + S
Sbjct: 67 AKPKTKPKFRFYDSFEKMIQETLDSSPES 95
>gi|212213043|ref|YP_002303979.1| DNA-binding protein [Coxiella burnetii CbuG_Q212]
gi|212011453|gb|ACJ18834.1| bacterial DNA-binding protein [Coxiella burnetii CbuG_Q212]
Length = 105
Score = 60.2 bits (145), Expect = 9e-08, Method: Composition-based stats.
Identities = 22/98 (22%), Positives = 35/98 (35%), Gaps = 9/98 (9%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKR---- 56
M KS ++ +A+ +L + V I L + L GG E G +
Sbjct: 8 MTKSQILAHLAEST-ELTKKQVTMIFEALSDLTHAHLKKGGAGEFVVPGLCKCSVKRKPA 66
Query: 57 -AARLARAPLAQKVIS---VEEKMVPFFRAGKNLKERL 90
AR P + ++ + V R K LKE +
Sbjct: 67 TKARKGINPFTGESMTFKAKPARNVVKIRPLKRLKEMV 104
>gi|16081263|ref|NP_393571.1| DNA-binding protein HTa [Thermoplasma acidophilum DSM 1728]
gi|11467945|sp|P02345|DBH_THEAC RecName: Full=DNA-binding protein HTa
gi|10639239|emb|CAC11241.1| DNA-binding protein HTa [Thermoplasma acidophilum]
Length = 90
Score = 60.2 bits (145), Expect = 9e-08, Method: Composition-based stats.
Identities = 26/84 (30%), Positives = 38/84 (45%), Gaps = 1/84 (1%)
Query: 4 SSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLARA 63
S L +AKK + ++ L+E+ G ++ + GFG F R + R AR
Sbjct: 5 SELSKEVAKK-ANTTQKVARTVIKSFLDEIVSQANGGQKINLAGFGIFERRTQGPRKARN 63
Query: 64 PLAQKVISVEEKMVPFFRAGKNLK 87
P +KVI V K FRA +K
Sbjct: 64 PQTKKVIEVPSKKKFVFRASSKIK 87
>gi|49188522|ref|YP_025620.1| single-stranded binding protein [Pseudomonas syringae pv.
maculicola]
gi|47525105|gb|AAT35119.1| single-stranded binding protein [Pseudomonas syringae pv.
maculicola]
gi|320326966|gb|EFW82983.1| single-stranded binding protein [Pseudomonas syringae pv.
glycinea str. race 4]
Length = 95
Score = 60.2 bits (145), Expect = 1e-07, Method: Composition-based stats.
Identities = 22/91 (24%), Positives = 34/91 (37%), Gaps = 1/91 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K L+ IA+ K + L + + L +G + + G G V +R AR
Sbjct: 4 TKDQLVAGIAEAI-DAPKTTARKALEQLGQIVADQLESGAEITLPGIGKLKVAERPARTG 62
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P I + K F K L + +N
Sbjct: 63 RNPSTGAAIEIAAKKAIKFVPAKVLNDSINK 93
>gi|268316438|ref|YP_003290157.1| histone family protein DNA-binding protein [Rhodothermus marinus
DSM 4252]
gi|262333972|gb|ACY47769.1| histone family protein DNA-binding protein [Rhodothermus marinus
DSM 4252]
Length = 131
Score = 59.8 bits (144), Expect = 1e-07, Method: Composition-based stats.
Identities = 24/93 (25%), Positives = 41/93 (44%), Gaps = 5/93 (5%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGG---RVEIRGFGSFSVRKRAA 58
K + +A + E VN ++E + Q L R+E+R FG F V++ A
Sbjct: 9 TKKDVARRVA-QLMGEPIYKSEPWVNAVIEALAQLLEEADPEVRIELRDFGVFEVKRTRA 67
Query: 59 R-LARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
+ AR P + + + + F+ K LK+ L
Sbjct: 68 KPKARNPKTNETVFIPSRRKTHFKPSKRLKQVL 100
>gi|50365273|ref|YP_053698.1| histone-like DNA-binding protein [Mesoplasma florum L1]
gi|50363829|gb|AAT75814.1| predicted histone-like DNA-binding protein [Mesoplasma florum L1]
Length = 377
Score = 59.8 bits (144), Expect = 1e-07, Method: Composition-based stats.
Identities = 25/95 (26%), Positives = 41/95 (43%), Gaps = 2/95 (2%)
Query: 2 IKSSLIGTIAKKNPK-LNYQDVEKIVNMLLEEMTQALAN-GGRVEIRGFGSFSVRKRAAR 59
K+ L+ +I N L ++KIV+ L E M L N G ++I F FS
Sbjct: 282 TKNDLVNSIFSNNENKLTKVKIKKIVDSLFELMENNLVNEGSEIKINNFAKFSTVFVDET 341
Query: 60 LARAPLAQKVISVEEKMVPFFRAGKNLKERLNSPD 94
+ ++ V + F++ K L+E LN+
Sbjct: 342 TMKDMKTGELKMVPSRKTIKFKSLKGLRESLNNEK 376
>gi|253584115|ref|ZP_04861313.1| predicted protein [Fusobacterium varium ATCC 27725]
gi|251834687|gb|EES63250.1| predicted protein [Fusobacterium varium ATCC 27725]
Length = 92
Score = 59.8 bits (144), Expect = 1e-07, Method: Composition-based stats.
Identities = 20/87 (22%), Positives = 37/87 (42%), Gaps = 1/87 (1%)
Query: 1 MIKSSLIGTIAKKNPK-LNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAAR 59
M K L + ++ + + +N+ + + +AL V G V +R R
Sbjct: 4 MNKRELAKIYSTITQGKISQKAALEEINIFTQTLQEALMKYDSVTFVNRGILEVLERKPR 63
Query: 60 LARAPLAQKVISVEEKMVPFFRAGKNL 86
L P ++++ + K V FRA KN+
Sbjct: 64 LVSNPSTRELMKIYPKKVVRFRASKNI 90
>gi|253584118|ref|ZP_04861316.1| predicted protein [Fusobacterium varium ATCC 27725]
gi|251834690|gb|EES63253.1| predicted protein [Fusobacterium varium ATCC 27725]
Length = 97
Score = 59.8 bits (144), Expect = 1e-07, Method: Composition-based stats.
Identities = 22/89 (24%), Positives = 45/89 (50%), Gaps = 1/89 (1%)
Query: 1 MIKSSLIGTIAK-KNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAAR 59
M K L + K++ + + +++ LE M +AL G+V+ G+F V K+ R
Sbjct: 9 MNKKELAKLYSAISQGKISQKAALEEIDIFLETMQEALVISGKVKFIKKGTFEVLKKEPR 68
Query: 60 LARAPLAQKVISVEEKMVPFFRAGKNLKE 88
+ P ++++ + + V FRA K++ +
Sbjct: 69 IVSNPSTRELMKIYPRKVVRFRASKSIIK 97
>gi|301384246|ref|ZP_07232664.1| single-stranded binding protein [Pseudomonas syringae pv. tomato
Max13]
gi|302063657|ref|ZP_07255198.1| single-stranded binding protein [Pseudomonas syringae pv. tomato
K40]
Length = 95
Score = 59.8 bits (144), Expect = 1e-07, Method: Composition-based stats.
Identities = 22/91 (24%), Positives = 33/91 (36%), Gaps = 1/91 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K L+ IA+ K + L + + L +G + + G G V R AR
Sbjct: 4 TKDQLVAGIAEAI-DAPKTTARKALEQLGQIVADQLESGAEITLPGIGKLKVADRPARTG 62
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P I + K F K L + +N
Sbjct: 63 RNPSTGAAIEIAAKKAIKFVPAKVLNDSINK 93
>gi|88607135|ref|YP_504885.1| integration host factor, beta subunit [Anaplasma phagocytophilum
HZ]
gi|88598198|gb|ABD43668.1| integration host factor, beta subunit [Anaplasma phagocytophilum
HZ]
Length = 97
Score = 59.8 bits (144), Expect = 1e-07, Method: Composition-based stats.
Identities = 32/93 (34%), Positives = 50/93 (53%), Gaps = 5/93 (5%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M++S LI IA+KNP L V +I+N+ + + Q + + RVE+RGFGSF+ R +
Sbjct: 1 MLRSDLIRRIARKNPTLGESVVSQILNVFFQSILQHMHDDSRVELRGFGSFASRSYVLKS 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSP 93
A KV + +FR + L + +N P
Sbjct: 61 A-NVALGKV----QYKRMYFRPSEKLIKAVNQP 88
>gi|85057510|ref|YP_456426.1| DNA-binding protein HU [Aster yellows witches'-broom phytoplasma
AYWB]
gi|84789615|gb|ABC65347.1| DNA-binding protein HU [Aster yellows witches'-broom phytoplasma
AYWB]
Length = 96
Score = 59.8 bits (144), Expect = 1e-07, Method: Composition-based stats.
Identities = 20/92 (21%), Positives = 40/92 (43%), Gaps = 2/92 (2%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGR-VEIRGFGSFSVRKRAAR 59
M K LI IA+ N K + E+ + + +++ + + G F ++ R A
Sbjct: 1 MTKKELIKNIAEAN-KTSISKTEEFYHSFEHTLIESITSNEEVILSSKIGKFILKTRKAY 59
Query: 60 LARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P K + + K + F+ K +K+++
Sbjct: 60 TGRNPQTGKKLKIPAKTIVTFKLSKTIKDKVK 91
>gi|258648340|ref|ZP_05735809.1| SPBc2 prophage-derived DNA-binding protein HU 2 [Prevotella
tannerae ATCC 51259]
gi|260851505|gb|EEX71374.1| SPBc2 prophage-derived DNA-binding protein HU 2 [Prevotella
tannerae ATCC 51259]
Length = 90
Score = 59.8 bits (144), Expect = 1e-07, Method: Composition-based stats.
Identities = 18/91 (19%), Positives = 44/91 (48%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M I +A + + ++ +++ ++ ++L G + I+ FG+F V+K+ R+
Sbjct: 1 MNNKEFIADLATRLDE-KAKETQRLASIFSTVFAESLEEGDSLSIQSFGTFEVKKKLERI 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
P ++ + V K+ F+ LK+++
Sbjct: 60 VTNPTNKQRMLVPPKLALSFKPSNILKDKIK 90
>gi|315453214|ref|YP_004073484.1| DNA-binding protein HU [Helicobacter felis ATCC 49179]
gi|315132266|emb|CBY82894.1| DNA-binding protein HU homolog [Helicobacter felis ATCC 49179]
Length = 101
Score = 59.8 bits (144), Expect = 1e-07, Method: Composition-based stats.
Identities = 26/90 (28%), Positives = 46/90 (51%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K I + K+ + +D E N ++ + +AL+ VE+ GFG F + +
Sbjct: 1 MKKLEFIDLMQKEGGFKDKKDTELAFNSFIKAIEKALSQHESVELVGFGKFEAVLQKGKK 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
+ P + K + ++KMVP F+ GK LK+ +
Sbjct: 61 GKVPGSDKTYTTKDKMVPKFKPGKILKDAV 90
>gi|255009411|ref|ZP_05281537.1| putative integration host factor IHF alpha subunit [Bacteroides
fragilis 3_1_12]
gi|313147170|ref|ZP_07809363.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
gi|313135937|gb|EFR53297.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
Length = 467
Score = 59.8 bits (144), Expect = 1e-07, Method: Composition-based stats.
Identities = 19/88 (21%), Positives = 39/88 (44%), Gaps = 1/88 (1%)
Query: 6 LIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLARAPL 65
L+ + ++ + +D + V + QAL N V+I+G G+F + +R +
Sbjct: 10 LVDLLVSRH-GVPQKDADVFVREFFLLIEQALENDQYVKIKGLGTFKLIGVNSRESVNIN 68
Query: 66 AQKVISVEEKMVPFFRAGKNLKERLNSP 93
+ I +E F +L++ +N P
Sbjct: 69 TGERIKIEGHTKISFTPDPSLRDIINRP 96
>gi|294673497|ref|YP_003574113.1| HU family DNA-binding protein [Prevotella ruminicola 23]
gi|294472549|gb|ADE81938.1| DNA-binding protein, HU family/extensin domain protein
[Prevotella ruminicola 23]
Length = 472
Score = 59.8 bits (144), Expect = 1e-07, Method: Composition-based stats.
Identities = 19/90 (21%), Positives = 38/90 (42%), Gaps = 1/90 (1%)
Query: 4 SSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLARA 63
L + ++ K+N +D V+ + + + Q L V+++G G+F + R +
Sbjct: 7 QELANVLVERR-KMNRRDASLFVSAMFDIVQQRLETDKLVKVKGLGTFKIIDVEDRESVN 65
Query: 64 PLAQKVISVEEKMVPFFRAGKNLKERLNSP 93
+ + +E F LKE +N P
Sbjct: 66 VNTGERVLIEGHGKITFVPDALLKELVNKP 95
>gi|189501612|ref|YP_001957329.1| histone family DNA-binding protein [Candidatus Amoebophilus
asiaticus 5a2]
gi|189497053|gb|ACE05600.1| histone family protein DNA-binding protein [Candidatus
Amoebophilus asiaticus 5a2]
Length = 95
Score = 59.8 bits (144), Expect = 1e-07, Method: Composition-based stats.
Identities = 25/91 (27%), Positives = 47/91 (51%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ ++ IA K +N DV+ +V + + QA+ +G V +GFG F +KR+ ++
Sbjct: 1 MNKAEVVTEIATKT-GINKSDVQVVVESFFQVVQQAMVDGKSVHFKGFGKFFNKKRSKKI 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
AR + ++E VP + K+ ++
Sbjct: 60 ARNLTDNTAMVIDEHYVPTLKISKDFVNKVK 90
>gi|317063948|ref|ZP_07928433.1| predicted protein [Fusobacterium ulcerans ATCC 49185]
gi|313689624|gb|EFS26459.1| predicted protein [Fusobacterium ulcerans ATCC 49185]
Length = 100
Score = 59.8 bits (144), Expect = 1e-07, Method: Composition-based stats.
Identities = 23/95 (24%), Positives = 38/95 (40%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M + + KK + + ++ VNM + + +AL V RG+G F + AR
Sbjct: 4 MTEKEFLTLYQKKRGLKSLNEAKEKVNMFWDTLFEALEENESVSFRGWGVFEKKVVPARR 63
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDS 95
+K+ + FR G NL R+N
Sbjct: 64 IMNINTKKIQYSTPRKTVRFRTGSNLSLRINEEKK 98
>gi|224418117|ref|ZP_03656123.1| hypothetical protein HcanM9_02456 [Helicobacter canadensis MIT
98-5491]
gi|253827444|ref|ZP_04870329.1| Histone-like DNA-binding protein HU (HupB) [Helicobacter
canadensis MIT 98-5491]
gi|313141652|ref|ZP_07803845.1| DNA-binding protein HU [Helicobacter canadensis MIT 98-5491]
gi|253510850|gb|EES89509.1| Histone-like DNA-binding protein HU (HupB) [Helicobacter
canadensis MIT 98-5491]
gi|313130683|gb|EFR48300.1| DNA-binding protein HU [Helicobacter canadensis MIT 98-5491]
Length = 96
Score = 59.4 bits (143), Expect = 1e-07, Method: Composition-based stats.
Identities = 24/91 (26%), Positives = 41/91 (45%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQAL-ANGGRVEIRGFGSFSVRKRAAR 59
M KS + + + ++ EK ++ + +AL G VE+ GFG F + +
Sbjct: 1 MNKSEFVDLVKEVGEYETKKEAEKAISAFTAAIEKALSKKDGSVELVGFGKFETVLQKGK 60
Query: 60 LARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
P K ++K VP F+AGK K+ +
Sbjct: 61 EGTVPGTTKKYKTKDKFVPKFKAGKGFKDAV 91
>gi|50365246|ref|YP_053671.1| histone-like DNA-binding protein [Mesoplasma florum L1]
gi|50363802|gb|AAT75787.1| predicted histone-like DNA-binding protein [Mesoplasma florum L1]
Length = 271
Score = 59.4 bits (143), Expect = 2e-07, Method: Composition-based stats.
Identities = 19/85 (22%), Positives = 38/85 (44%)
Query: 3 KSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLAR 62
K L+ + + P + +++IV L + + L +G V I FG ++ + A
Sbjct: 159 KKYLVERLTEMYPDYKKKTIDEIVKNLFQNVENHLISGEEVIIENFGKLIKVEKPVKQAI 218
Query: 63 APLAQKVISVEEKMVPFFRAGKNLK 87
P +++ V + F+ +NLK
Sbjct: 219 NPSNGEIVEVPATTIIKFKPSRNLK 243
>gi|68171138|ref|ZP_00544547.1| Histone-like bacterial DNA-binding protein [Ehrlichia chaffeensis
str. Sapulpa]
gi|88657616|ref|YP_507602.1| DNA-binding protein HU [Ehrlichia chaffeensis str. Arkansas]
gi|67999463|gb|EAM86103.1| Histone-like bacterial DNA-binding protein [Ehrlichia chaffeensis
str. Sapulpa]
gi|88599073|gb|ABD44542.1| DNA-binding protein HU [Ehrlichia chaffeensis str. Arkansas]
Length = 94
Score = 59.4 bits (143), Expect = 2e-07, Method: Composition-based stats.
Identities = 14/76 (18%), Positives = 31/76 (40%)
Query: 16 KLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLARAPLAQKVISVEEK 75
L + + ++++ + AL + + G+ V + A + P K+ ++ K
Sbjct: 15 GLTKKVSSQAYDLVMLSIQNALETSHLIRLHNVGTLHVIQCAEKKYHNPKTGKLETLAPK 74
Query: 76 MVPFFRAGKNLKERLN 91
FR+ K L +N
Sbjct: 75 KRVRFRSSKKLSNAIN 90
>gi|86608286|ref|YP_477048.1| DNA-binding protein HU [Synechococcus sp. JA-2-3B'a(2-13)]
gi|86556828|gb|ABD01785.1| DNA-binding protein HU [Synechococcus sp. JA-2-3B'a(2-13)]
Length = 195
Score = 59.4 bits (143), Expect = 2e-07, Method: Composition-based stats.
Identities = 23/85 (27%), Positives = 38/85 (44%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
+ L +A + L + + +L+ ++Q LA GG V + FG+FS+R R AR
Sbjct: 94 TRRLLARQMAAQVDGLTVEMAAAALEAMLDSISQCLAQGGSVRLARFGTFSLRHRPARQT 153
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNL 86
P + + + VP F L
Sbjct: 154 YHPRTKAPVHIPAADVPHFVPSPEL 178
>gi|265764038|ref|ZP_06092606.1| conserved hypothetical protein [Bacteroides sp. 2_1_16]
gi|263256646|gb|EEZ27992.1| conserved hypothetical protein [Bacteroides sp. 2_1_16]
Length = 483
Score = 59.4 bits (143), Expect = 2e-07, Method: Composition-based stats.
Identities = 18/90 (20%), Positives = 40/90 (44%), Gaps = 1/90 (1%)
Query: 4 SSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLARA 63
L+ + ++ +++ +D + V + QAL V+I+G G+F + +R +
Sbjct: 8 QDLVELLVNRH-EVSQEDADVFVREFFLLIEQALDADQYVKIKGLGTFKLIGVNSRESVN 66
Query: 64 PLAQKVISVEEKMVPFFRAGKNLKERLNSP 93
+ I +E F +L++ +N P
Sbjct: 67 VNTGERIKIEGHTKISFTPDPSLRDIINRP 96
>gi|15606646|ref|NP_214026.1| DNA binding protein HU [Aquifex aeolicus VF5]
gi|14194592|sp|O67461|DBH_AQUAE RecName: Full=DNA-binding protein HU
gi|2983862|gb|AAC07415.1| DNA binding protein HU [Aquifex aeolicus VF5]
Length = 94
Score = 59.4 bits (143), Expect = 2e-07, Method: Composition-based stats.
Identities = 22/93 (23%), Positives = 45/93 (48%), Gaps = 5/93 (5%)
Query: 1 MIKSSLIGTIAKK-----NPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRK 55
M K + I + N K+ ++V +V+ + + + L G +V+I GFG+F V+
Sbjct: 1 MTKKEIAEEIYDRLIRDYNVKIQKKEVYNLVSEVFTIIQECLLKGEKVKISGFGTFVVKT 60
Query: 56 RAARLARAPLAQKVISVEEKMVPFFRAGKNLKE 88
R + ++++ V E+ + F+ KN +
Sbjct: 61 RKPKKGMNIKKREIVEVPERKIVLFKPSKNFIK 93
>gi|85057657|ref|YP_456573.1| DNA-binding protein HU [Aster yellows witches'-broom phytoplasma
AYWB]
gi|84789762|gb|ABC65494.1| DNA-binding protein HU [Aster yellows witches'-broom phytoplasma
AYWB]
Length = 96
Score = 59.4 bits (143), Expect = 2e-07, Method: Composition-based stats.
Identities = 22/92 (23%), Positives = 41/92 (44%), Gaps = 2/92 (2%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQAL-ANGGRVEIRGFGSFSVRKRAAR 59
M K LI IA+ N K + E+ + + +++ +N + G F ++ R A
Sbjct: 1 MTKKELIKNIAEVN-KTSISKTEEFYHSFEHTLIESITSNEEVILSSKIGKFILKTRKAY 59
Query: 60 LARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P K + + K V F+ K +K+++
Sbjct: 60 TGRNPQTGKKLKISAKTVVSFKLSKTIKDKVK 91
>gi|257469716|ref|ZP_05633808.1| hypothetical protein FulcA4_10270 [Fusobacterium ulcerans ATCC
49185]
Length = 97
Score = 59.4 bits (143), Expect = 2e-07, Method: Composition-based stats.
Identities = 23/95 (24%), Positives = 38/95 (40%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M + + KK + + ++ VNM + + +AL V RG+G F + AR
Sbjct: 1 MTEKEFLTLYQKKRGLKSLNEAKEKVNMFWDTLFEALEENESVSFRGWGVFEKKVVPARR 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDS 95
+K+ + FR G NL R+N
Sbjct: 61 IMNINTKKIQYSTPRKTVRFRTGSNLSLRINEEKK 95
>gi|13540991|ref|NP_110679.1| nucleoid DNA-binding protein (HB-related) [Thermoplasma volcanium
GSS1]
gi|14324375|dbj|BAB59303.1| DNA-binding protein HU [Thermoplasma volcanium GSS1]
Length = 90
Score = 59.4 bits (143), Expect = 2e-07, Method: Composition-based stats.
Identities = 26/84 (30%), Positives = 38/84 (45%), Gaps = 1/84 (1%)
Query: 4 SSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLARA 63
S L +AKK + ++ L+E+ G ++ + GFG F R + R AR
Sbjct: 5 SELSKDVAKK-ANTTQKVARTVIKSFLDEIVAQANGGQKINLAGFGIFERRTQGPRKARN 63
Query: 64 PLAQKVISVEEKMVPFFRAGKNLK 87
P +KVI V K FRA +K
Sbjct: 64 PQTKKVIEVPSKKKFVFRASSKIK 87
>gi|53713714|ref|YP_099706.1| putative integration host factor IHF subunit alpha [Bacteroides
fragilis YCH46]
gi|52216579|dbj|BAD49172.1| putative integration host factor IHF alpha subunit [Bacteroides
fragilis YCH46]
Length = 483
Score = 59.0 bits (142), Expect = 2e-07, Method: Composition-based stats.
Identities = 18/90 (20%), Positives = 40/90 (44%), Gaps = 1/90 (1%)
Query: 4 SSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLARA 63
L+ + ++ +++ +D + V + QAL V+I+G G+F + +R +
Sbjct: 8 QDLVELLVNRH-EVSQEDADVFVREFFLLIEQALDADQYVKIKGLGTFKLIGVNSRESVN 66
Query: 64 PLAQKVISVEEKMVPFFRAGKNLKERLNSP 93
+ I +E F +L++ +N P
Sbjct: 67 VNTGERIKIEGHTKISFTPDPSLRDIINRP 96
>gi|301163423|emb|CBW22974.1| conserved hypothetical protein [Bacteroides fragilis 638R]
Length = 483
Score = 59.0 bits (142), Expect = 2e-07, Method: Composition-based stats.
Identities = 18/90 (20%), Positives = 40/90 (44%), Gaps = 1/90 (1%)
Query: 4 SSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLARA 63
L+ + ++ +++ +D + V + QAL V+I+G G+F + +R +
Sbjct: 8 QDLVELLVNRH-EVSQEDADVFVREFFLLIEQALDADQYVKIKGLGTFKLIGVNSRESVN 66
Query: 64 PLAQKVISVEEKMVPFFRAGKNLKERLNSP 93
+ I +E F +L++ +N P
Sbjct: 67 VNTGERIKIEGHTKISFTPDPSLRDIINRP 96
>gi|189485144|ref|YP_001956085.1| integration host factor alpha subunit [uncultured Termite group 1
bacterium phylotype Rs-D17]
gi|170287103|dbj|BAG13624.1| integration host factor alpha subunit [uncultured Termite group 1
bacterium phylotype Rs-D17]
Length = 86
Score = 59.0 bits (142), Expect = 2e-07, Method: Composition-based stats.
Identities = 22/88 (25%), Positives = 44/88 (50%), Gaps = 2/88 (2%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ + +++ + ++ E+ VN + EEM+ +L NG +V I GFGSF++ + +
Sbjct: 1 MTKNDIAIALSRILS--SKKEAEEAVNKVFEEMSNSLKNGDKVIITGFGSFNMFETKTKR 58
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKE 88
R P + + + F+ K +
Sbjct: 59 VRNPRTCEKLLIAPMKKIRFKQSKKFFK 86
>gi|23006898|ref|ZP_00049004.1| COG0776: Bacterial nucleoid DNA-binding protein [Magnetospirillum
magnetotacticum MS-1]
Length = 80
Score = 59.0 bits (142), Expect = 2e-07, Method: Composition-based stats.
Identities = 17/66 (25%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
++ L + ++ L+ + +V +L E+ L++G V++ FGSF VR + R+
Sbjct: 7 TRADLSEAVYQQ-VGLSRAESAALVETVLAEICNCLSSGETVKLSSFGSFVVRSKGKRIG 65
Query: 62 RAPLAQ 67
R P
Sbjct: 66 RNPKTG 71
>gi|161789239|ref|YP_001595601.1| histone-like DNA-binding protein [Vibrio sp. 23023]
gi|161761364|gb|ABX77010.1| Histone-like DNA-binding protein [Vibrio sp. 23023]
Length = 98
Score = 59.0 bits (142), Expect = 2e-07, Method: Composition-based stats.
Identities = 26/99 (26%), Positives = 50/99 (50%), Gaps = 2/99 (2%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K LI I+ K L+ + V + +++ +EM +AL + +EI G F ++ R +L
Sbjct: 1 MNKVELIARISSKY-DLDEKRVRVLADVIFDEMAKALLDRESIEIPELGDFWIKTRPEKL 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDSTLSN 99
+ +VI++ EK F+ L++ LN + ++
Sbjct: 60 SEN-RRGQVITIREKHAVRFKPVIQLRKALNPKSNFIAK 97
>gi|83950622|ref|ZP_00959355.1| DNA-binding protein HU [Roseovarius nubinhibens ISM]
gi|83838521|gb|EAP77817.1| DNA-binding protein HU [Roseovarius nubinhibens ISM]
Length = 95
Score = 59.0 bits (142), Expect = 2e-07, Method: Composition-based stats.
Identities = 23/90 (25%), Positives = 41/90 (45%), Gaps = 1/90 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
KS L +A++ + + ++ + +T+ ++NGG V + G G R+R R+
Sbjct: 6 TKSQLSAVLAEEM-GSDKKSAAAALDAVCAVITREVSNGGAVTLPGVGKIYCRERPERMV 64
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + I E V K LK+ +N
Sbjct: 65 RNPATGQQIKKEADKVVKMTIAKALKDSVN 94
>gi|293400638|ref|ZP_06644783.1| DNA-binding protein HU [Erysipelotrichaceae bacterium 5_2_54FAA]
gi|291305664|gb|EFE46908.1| DNA-binding protein HU [Erysipelotrichaceae bacterium 5_2_54FAA]
Length = 94
Score = 59.0 bits (142), Expect = 2e-07, Method: Composition-based stats.
Identities = 23/71 (32%), Positives = 44/71 (61%), Gaps = 1/71 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K +L+ +A+K ++ +D V+ + EE+T+ LA+GG+V++ GFG F V +R AR+
Sbjct: 6 NKKALVEVVAEKL-EMTKKDATVAVDTVFEEITKTLADGGKVDLSGFGKFEVAERPARMG 64
Query: 62 RAPLAQKVISV 72
P ++ + +
Sbjct: 65 INPATKEPLPI 75
>gi|253584372|ref|ZP_04861570.1| predicted protein [Fusobacterium varium ATCC 27725]
gi|251834944|gb|EES63507.1| predicted protein [Fusobacterium varium ATCC 27725]
Length = 101
Score = 59.0 bits (142), Expect = 2e-07, Method: Composition-based stats.
Identities = 23/95 (24%), Positives = 39/95 (41%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M + + KK ++ + ++ VNM + + +AL V RG+G F + AR
Sbjct: 4 MTEREFLSLYQKKRGLKSFNEAKEKVNMFWDTLFEALKENESVSFRGWGVFEKKVVPARR 63
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDS 95
+K+ + FR G NL R+N
Sbjct: 64 IMNINTKKIQYSTPRKTVRFRTGSNLSLRINDEKK 98
>gi|213972297|ref|ZP_03400361.1| DNA-binding protein HU family [Pseudomonas syringae pv. tomato
T1]
gi|213922946|gb|EEB56577.1| DNA-binding protein HU family [Pseudomonas syringae pv. tomato
T1]
Length = 95
Score = 58.6 bits (141), Expect = 3e-07, Method: Composition-based stats.
Identities = 22/91 (24%), Positives = 33/91 (36%), Gaps = 1/91 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K L+ IA+ K + L + + L +G + + G G V R AR
Sbjct: 4 TKDQLVAGIAEAI-DAQKTTARKALEQLGQIVADQLESGAEITLPGIGKLKVADRPARTG 62
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P I + K F K L + +N
Sbjct: 63 RNPSTGAAIEIAAKKAIKFVPAKVLNDSINK 93
>gi|296532061|ref|ZP_06894838.1| DNA-binding protein HU [Roseomonas cervicalis ATCC 49957]
gi|296267623|gb|EFH13471.1| DNA-binding protein HU [Roseomonas cervicalis ATCC 49957]
Length = 103
Score = 58.6 bits (141), Expect = 3e-07, Method: Composition-based stats.
Identities = 21/89 (23%), Positives = 37/89 (41%), Gaps = 1/89 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K L TI + + ++ + ++E + + GR I FG+F VR+ R
Sbjct: 1 MSKKFLADTI-QNSIEITGVGANALAGDIIEAIKAEIVKTGRFTIPDFGAFIVRETPKRT 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKER 89
A P + + V+ F+ L+E
Sbjct: 60 AMNPRTGEKVQVKANATVRFKPSPALREA 88
>gi|291461216|ref|ZP_06027675.2| DNA-binding protein HU [Fusobacterium periodonticum ATCC 33693]
gi|291378149|gb|EFE85667.1| DNA-binding protein HU [Fusobacterium periodonticum ATCC 33693]
Length = 107
Score = 58.6 bits (141), Expect = 3e-07, Method: Composition-based stats.
Identities = 26/66 (39%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K + AKK +L +D E++V LE + AL G V GFGS+ VR+RAAR
Sbjct: 6 MTKKEFVDAFAKK-GELKIKDSERLVAAFLETVEDALLKGEGVRFIGFGSWEVRERAARE 64
Query: 61 ARAPLA 66
P
Sbjct: 65 VTNPQT 70
>gi|281419889|ref|ZP_06250888.1| putative integration host factor IHF alpha subunit [Prevotella
copri DSM 18205]
gi|281406016|gb|EFB36696.1| putative integration host factor IHF alpha subunit [Prevotella
copri DSM 18205]
Length = 479
Score = 58.6 bits (141), Expect = 3e-07, Method: Composition-based stats.
Identities = 19/86 (22%), Positives = 37/86 (43%), Gaps = 1/86 (1%)
Query: 8 GTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLARAPLAQ 67
+A K+ L+ + E + + + Q L +V+I+ G+F V+ R +
Sbjct: 11 KLLADKS-GLSQVEAELFIRKMFDVCNQGLDADKQVKIKWLGTFKVQATKDRESINVNTG 69
Query: 68 KVISVEEKMVPFFRAGKNLKERLNSP 93
+ ++E + F LKE +N P
Sbjct: 70 ERFTIEGRDKLTFTPDNILKEIVNKP 95
>gi|330944003|gb|EGH46189.1| single-stranded binding protein [Pseudomonas syringae pv. pisi
str. 1704B]
Length = 97
Score = 58.6 bits (141), Expect = 3e-07, Method: Composition-based stats.
Identities = 22/91 (24%), Positives = 35/91 (38%), Gaps = 1/91 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K L+ IA+ K + L + + L +G + + G G V +R AR
Sbjct: 4 TKDQLVAGIAEAI-DAPKTTARKALEQLGQIVADQLESGAEITLPGIGKLKVAERPARTG 62
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P I + K F + K L + +N
Sbjct: 63 RNPSTGAAIEIAAKKAIKFVSAKVLNDAINK 93
>gi|187251516|ref|YP_001875998.1| DNA-binding protein [Elusimicrobium minutum Pei191]
gi|186971676|gb|ACC98661.1| Bacterial DNA-binding protein [Elusimicrobium minutum Pei191]
Length = 86
Score = 58.6 bits (141), Expect = 3e-07, Method: Composition-based stats.
Identities = 17/88 (19%), Positives = 40/88 (45%), Gaps = 2/88 (2%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K ++ +A L+ + ++ V + + + L G+V I FG+F + + A +
Sbjct: 1 MKKEDIVNRLA--LSLLDKKQSKQTVEEVFAIIKEGLLRDGKVTISNFGTFKLVRTKAAV 58
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKE 88
P + ++V K F++ ++ +
Sbjct: 59 RHNPKTLERVNVPAKTKVRFKSSPSITD 86
>gi|253582815|ref|ZP_04860035.1| predicted protein [Fusobacterium varium ATCC 27725]
gi|257470501|ref|ZP_05634591.1| histone-like DNA-binding phage protein [Fusobacterium ulcerans
ATCC 49185]
gi|317064708|ref|ZP_07929193.1| predicted protein [Fusobacterium ulcerans ATCC 49185]
gi|251835391|gb|EES63932.1| predicted protein [Fusobacterium varium ATCC 27725]
gi|313690384|gb|EFS27219.1| predicted protein [Fusobacterium ulcerans ATCC 49185]
Length = 94
Score = 58.6 bits (141), Expect = 3e-07, Method: Composition-based stats.
Identities = 21/94 (22%), Positives = 37/94 (39%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K I KK L + ++ V +LE + L G+V+ G F+V +
Sbjct: 1 MNKKDFIKLYRKKLNNLTIAEAKEDVEAILEIIEAGLKKDGKVQFFNKGVFTVGNIKPKT 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSPD 94
P ++++ E F A LK+++
Sbjct: 61 ISNPKTRELMQTTEMKKVKFNASFKLKDKIQDKK 94
>gi|269958577|ref|YP_003328364.1| putative integration host factor [Anaplasma centrale str. Israel]
gi|269848406|gb|ACZ49050.1| putative integration host factor [Anaplasma centrale str. Israel]
Length = 91
Score = 58.2 bits (140), Expect = 3e-07, Method: Composition-based stats.
Identities = 26/93 (27%), Positives = 45/93 (48%), Gaps = 11/93 (11%)
Query: 3 KSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAAR--- 59
KS LI ++++NP L V +IV + + +++G RVE+RGFG+FS R +
Sbjct: 4 KSDLIQRVSRRNPSLGEAVVSQIVGIFFSSIVSCISSGHRVELRGFGAFSTRHYVLKDHG 63
Query: 60 -LARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
+R P +FR + L + ++
Sbjct: 64 LNSRLPK-------ATYKRVYFRPSEKLVKAVD 89
>gi|154707338|ref|YP_001424941.1| DNA-binding protein [Coxiella burnetii Dugway 5J108-111]
gi|161830030|ref|YP_001596403.1| DNA-binding protein BpH2 [Coxiella burnetii RSA 331]
gi|215918971|ref|NP_819508.2| DNA-binding protein BpH2 [Coxiella burnetii RSA 493]
gi|154356624|gb|ABS78086.1| bacterial DNA-binding protein [Coxiella burnetii Dugway 5J108-111]
gi|161761897|gb|ABX77539.1| DNA-binding protein BpH2 [Coxiella burnetii RSA 331]
gi|206583856|gb|AAO90022.2| bacterial DNA-binding protein [Coxiella burnetii RSA 493]
Length = 129
Score = 58.2 bits (140), Expect = 3e-07, Method: Composition-based stats.
Identities = 22/98 (22%), Positives = 35/98 (35%), Gaps = 9/98 (9%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKR---- 56
M KS ++ +A+ +L + V I L + L GG E G +
Sbjct: 32 MTKSQILAHLAEST-ELTKKQVTMIFEALSDLTHAHLKKGGAGEFVVPGLCKCSVKRKPA 90
Query: 57 -AARLARAPLAQKVIS---VEEKMVPFFRAGKNLKERL 90
AR P + ++ + V R K LKE +
Sbjct: 91 TKARKGINPFTGESMTFKAKPARNVVKIRPLKRLKEMV 128
>gi|86605026|ref|YP_473789.1| DNA-binding protein HU [Synechococcus sp. JA-3-3Ab]
gi|86553568|gb|ABC98526.1| DNA-binding protein HU [Synechococcus sp. JA-3-3Ab]
Length = 108
Score = 58.2 bits (140), Expect = 3e-07, Method: Composition-based stats.
Identities = 22/85 (25%), Positives = 38/85 (44%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
+ L +A + L + + +L+ ++Q LA GG V + FG+F +R R AR
Sbjct: 7 NRRLLARQMAAQVDGLTVKMAAAALEAMLDSISQCLAEGGSVRLARFGTFLLRPRPARQT 66
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNL 86
P + + + VP+F L
Sbjct: 67 YHPRTKAPVHIPAAQVPYFVPSPEL 91
>gi|53713715|ref|YP_099707.1| DNA-binding protein HU [Bacteroides fragilis YCH46]
gi|60681986|ref|YP_212130.1| putative histone-like DNA-binding protein HU2 [Bacteroides
fragilis NCTC 9343]
gi|265764039|ref|ZP_06092607.1| integration host factor, alpha subunit [Bacteroides sp. 2_1_16]
gi|52216580|dbj|BAD49173.1| DNA-binding protein HU [Bacteroides fragilis YCH46]
gi|60493420|emb|CAH08206.1| putative histone-like DNA-binding protein HU2 [Bacteroides
fragilis NCTC 9343]
gi|263256647|gb|EEZ27993.1| integration host factor, alpha subunit [Bacteroides sp. 2_1_16]
gi|301163424|emb|CBW22975.1| putative histone-like DNA-binding protein HU2 [Bacteroides
fragilis 638R]
Length = 96
Score = 58.2 bits (140), Expect = 4e-07, Method: Composition-based stats.
Identities = 23/92 (25%), Positives = 44/92 (47%), Gaps = 1/92 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M ++++ E ++ LL ++TQ L + I+GFG+F V+K+A R+
Sbjct: 1 MNNKEFTSELSRRLGYNTKYTSE-LITSLLSDITQELQESNAIGIQGFGTFEVKKKAERI 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
P+ + + V K+V F+ LK++
Sbjct: 60 VINPVTKLRLLVPPKLVLAFKPSPILKDKFKE 91
>gi|253578053|ref|ZP_04855325.1| predicted protein [Ruminococcus sp. 5_1_39B_FAA]
gi|251850371|gb|EES78329.1| predicted protein [Ruminococcus sp. 5_1_39BFAA]
Length = 209
Score = 58.2 bits (140), Expect = 4e-07, Method: Composition-based stats.
Identities = 23/85 (27%), Positives = 43/85 (50%), Gaps = 1/85 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
+S+ I +A ++ L +D + I + E+ L +G ++ GFG+F R AR
Sbjct: 116 TQSAFIRRLA-RSNDLQIKDADIITKQVFRELISCLKDGFCIKFEGFGTFGTYTRKARSV 174
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNL 86
+ P+ Q+ +++EK V F+ L
Sbjct: 175 KHPVTQERCTIKEKAVVKFKPSAKL 199
>gi|253584142|ref|ZP_04861340.1| predicted protein [Fusobacterium varium ATCC 27725]
gi|251834714|gb|EES63277.1| predicted protein [Fusobacterium varium ATCC 27725]
Length = 96
Score = 58.2 bits (140), Expect = 4e-07, Method: Composition-based stats.
Identities = 21/93 (22%), Positives = 43/93 (46%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M + I + +K + + + V++ E + L ++E +G+G F V++ R+
Sbjct: 1 MKEIEFIKELKEKRELRSMKIAKNKVDIFWEGIVDVLKTNEKLEFKGWGKFEVKETKERI 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSP 93
P +K+ + + F+ GKNLK N+
Sbjct: 61 FSNPRTKKIEKIPAQKKITFKQGKNLKRSFNTK 93
>gi|57239022|ref|YP_180158.1| putative DNA-binding protein HU [Ehrlichia ruminantium str.
Welgevonden]
gi|58578963|ref|YP_197175.1| putative DNA-binding protein HU [Ehrlichia ruminantium str.
Welgevonden]
gi|58617020|ref|YP_196219.1| putative DNA-binding protein HU [Ehrlichia ruminantium str.
Gardel]
gi|57161101|emb|CAH58010.1| putative DNA-binding protein HU-beta [Ehrlichia ruminantium str.
Welgevonden]
gi|58416632|emb|CAI27745.1| Putative DNA-binding protein HU [Ehrlichia ruminantium str.
Gardel]
gi|58417589|emb|CAI26793.1| Putative DNA-binding protein HU [Ehrlichia ruminantium str.
Welgevonden]
Length = 94
Score = 58.2 bits (140), Expect = 4e-07, Method: Composition-based stats.
Identities = 15/80 (18%), Positives = 33/80 (41%)
Query: 16 KLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLARAPLAQKVISVEEK 75
L + + ++++ + AL + + G+ V + A + P K+ ++ K
Sbjct: 15 GLTKKTSSQAYDLVMLNIQNALKTSHLIRLHNVGTLHVIQCAEKKYHNPKTGKLETLSPK 74
Query: 76 MVPFFRAGKNLKERLNSPDS 95
FR+ K L +NS +
Sbjct: 75 KRVRFRSSKKLSNSINSIED 94
>gi|46562241|ref|YP_009044.1| DNA-binding protein HU [Desulfovibrio vulgaris str. Hildenborough]
gi|46447778|gb|AAS94444.1| DNA-binding protein HU, putative [Desulfovibrio vulgaris str.
Hildenborough]
gi|311235386|gb|ADP88239.1| histone family protein DNA-binding protein [Desulfovibrio vulgaris
RCH1]
Length = 117
Score = 58.2 bits (140), Expect = 4e-07, Method: Composition-based stats.
Identities = 18/97 (18%), Positives = 33/97 (34%), Gaps = 1/97 (1%)
Query: 3 KSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLAR 62
K L+ + ++ L + + L + L G V + G + R
Sbjct: 6 KPQLVAYLRER-AHLTEEQALMTLKALYLFSLEHLEKGVGVVLPDIGQIKPSMGKGGVGR 64
Query: 63 APLAQKVISVEEKMVPFFRAGKNLKERLNSPDSTLSN 99
+ +E K+ F A K LKE L++ +
Sbjct: 65 NFRTGEATVIEPKLKLTFSASKALKEPLDAAQRKAAK 101
>gi|120586958|ref|YP_961303.1| histone family protein DNA-binding protein [Desulfovibrio vulgaris
subsp. vulgaris DP4]
gi|120564372|gb|ABM30115.1| histone family protein DNA-binding protein [Desulfovibrio vulgaris
DP4]
Length = 117
Score = 57.9 bits (139), Expect = 4e-07, Method: Composition-based stats.
Identities = 18/97 (18%), Positives = 33/97 (34%), Gaps = 1/97 (1%)
Query: 3 KSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLAR 62
K L+ + ++ L + + L + L G V + G + R
Sbjct: 6 KPQLVAYLRER-AHLTEEQALMTLKALYLFSLEHLEKGVGVVLPDIGQIKPSMGKGGVGR 64
Query: 63 APLAQKVISVEEKMVPFFRAGKNLKERLNSPDSTLSN 99
+ +E K+ F A K LKE L++ +
Sbjct: 65 NFRTGEATVIEPKLKLTFSASKALKEPLDAAQRKAAK 101
>gi|317063648|ref|ZP_07928133.1| predicted protein [Fusobacterium ulcerans ATCC 49185]
gi|313689324|gb|EFS26159.1| predicted protein [Fusobacterium ulcerans ATCC 49185]
Length = 92
Score = 57.9 bits (139), Expect = 5e-07, Method: Composition-based stats.
Identities = 22/89 (24%), Positives = 39/89 (43%), Gaps = 2/89 (2%)
Query: 1 MIKSSLIGTIAKKNP--KLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAA 58
M K L K++ L + + +N LE + +A+A V G+F + R
Sbjct: 4 MNKRELAKVYKKRHSSNNLTVKKAVEEINEFLETVKEAIAIDSEVRFPKRGAFEILIRQP 63
Query: 59 RLARAPLAQKVISVEEKMVPFFRAGKNLK 87
R+ P+ ++ + + K FRA K +K
Sbjct: 64 RVVSNPVTREQMEIYPKKTVRFRASKKMK 92
>gi|303235570|ref|ZP_07322177.1| DNA-binding protein HU [Prevotella disiens FB035-09AN]
gi|302484017|gb|EFL47005.1| DNA-binding protein HU [Prevotella disiens FB035-09AN]
Length = 408
Score = 57.9 bits (139), Expect = 5e-07, Method: Composition-based stats.
Identities = 22/87 (25%), Positives = 39/87 (44%), Gaps = 1/87 (1%)
Query: 7 IGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLARAPLA 66
+AKK+ KL ++ EK V+ L E + + L +++G G+F V+ R +
Sbjct: 10 ADAVAKKH-KLTIKESEKFVSQLFEVIQEGLHEDKIAKVKGLGTFKVQAVKPRESINVNT 68
Query: 67 QKVISVEEKMVPFFRAGKNLKERLNSP 93
K + + F +KE +N P
Sbjct: 69 GKRVLIAGHDKVSFTPDAAMKELVNKP 95
>gi|257469401|ref|ZP_05633494.1| hypothetical protein FulcA4_08674 [Fusobacterium ulcerans ATCC
49185]
Length = 89
Score = 57.9 bits (139), Expect = 5e-07, Method: Composition-based stats.
Identities = 22/89 (24%), Positives = 39/89 (43%), Gaps = 2/89 (2%)
Query: 1 MIKSSLIGTIAKKNP--KLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAA 58
M K L K++ L + + +N LE + +A+A V G+F + R
Sbjct: 1 MNKRELAKVYKKRHSSNNLTVKKAVEEINEFLETVKEAIAIDSEVRFPKRGAFEILIRQP 60
Query: 59 RLARAPLAQKVISVEEKMVPFFRAGKNLK 87
R+ P+ ++ + + K FRA K +K
Sbjct: 61 RVVSNPVTREQMEIYPKKTVRFRASKKMK 89
>gi|255013881|ref|ZP_05286007.1| putative DNA-binding protein HU [Bacteroides sp. 2_1_7]
gi|256839777|ref|ZP_05545286.1| integration host factor, beta subunit [Parabacteroides sp. D13]
gi|262381911|ref|ZP_06075049.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
gi|298375536|ref|ZP_06985493.1| DNA-binding protein HU [Bacteroides sp. 3_1_19]
gi|256738707|gb|EEU52032.1| integration host factor, beta subunit [Parabacteroides sp. D13]
gi|262297088|gb|EEY85018.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
gi|298268036|gb|EFI09692.1| DNA-binding protein HU [Bacteroides sp. 3_1_19]
Length = 100
Score = 57.9 bits (139), Expect = 5e-07, Method: Composition-based stats.
Identities = 26/92 (28%), Positives = 46/92 (50%), Gaps = 1/92 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M LI +A + + +V +++ L ++ L + + ++GFG F V+K+A R+
Sbjct: 5 MKNKELITELANRMDWTSK-EVSDMLSALSSVVSSKLVDNDTIYLQGFGQFEVKKKAERI 63
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
+ P K V K+VP F+ G +K RL
Sbjct: 64 SVNPANGKRYLVPPKLVPVFKPGTTVKNRLKE 95
>gi|39938888|ref|NP_950654.1| nucleoid DNA-binding protein [Onion yellows phytoplasma OY-M]
gi|39721997|dbj|BAD04487.1| bacterial nucleoid DNA-binding protein [Onion yellows phytoplasma
OY-M]
Length = 96
Score = 57.9 bits (139), Expect = 5e-07, Method: Composition-based stats.
Identities = 26/92 (28%), Positives = 45/92 (48%), Gaps = 2/92 (2%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALA-NGGRVEIRGFGSFSVRKRAAR 59
M K LI IA+ N K + E+ N+ + + +A+ N V G F ++ R A
Sbjct: 1 MTKKELIKKIAEVN-KTSISKTEEFYNIFEKTLIEAITTNEEVVLSPQIGKFKLKSRKAY 59
Query: 60 LARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
+ R P +K + + K V F+ KN+K+++
Sbjct: 60 IGRNPKTKKKLKIPAKTVVTFKLSKNIKDQVK 91
>gi|257076532|ref|ZP_05570893.1| DNA-binding protein [Ferroplasma acidarmanus fer1]
Length = 90
Score = 57.9 bits (139), Expect = 5e-07, Method: Composition-based stats.
Identities = 22/84 (26%), Positives = 39/84 (46%), Gaps = 1/84 (1%)
Query: 4 SSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLARA 63
S L +A + +I+ L+E +++ G +V + FG F +++ R+AR
Sbjct: 5 SELSKKVA-STTNTTQKKTAEIITAFLKETVESVNAGNKVNLADFGIFERKEQKERVARN 63
Query: 64 PLAQKVISVEEKMVPFFRAGKNLK 87
P ++ I V K FRA +K
Sbjct: 64 PKTREEIKVPAKDKFVFRASSAIK 87
>gi|48477447|ref|YP_023153.1| DNA-binding protein [Picrophilus torridus DSM 9790]
gi|48430095|gb|AAT42960.1| DNA-binding protein [Picrophilus torridus DSM 9790]
Length = 90
Score = 57.9 bits (139), Expect = 5e-07, Method: Composition-based stats.
Identities = 24/84 (28%), Positives = 38/84 (45%), Gaps = 1/84 (1%)
Query: 4 SSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLARA 63
S L T+AKK + ++ L E+ +G ++ + GFG F + ++ R AR
Sbjct: 5 SELSKTVAKKT-DTTQKKARDVIREFLAEVVSQADSGQKINLAGFGIFERKTQSPRTARN 63
Query: 64 PLAQKVISVEEKMVPFFRAGKNLK 87
P + I V K FRA +K
Sbjct: 64 PQTRAEIKVPAKKKFVFRASSKIK 87
>gi|73667235|ref|YP_303251.1| histone-like DNA-binding protein [Ehrlichia canis str. Jake]
gi|72394376|gb|AAZ68653.1| Histone-like bacterial DNA-binding protein [Ehrlichia canis str.
Jake]
Length = 87
Score = 57.5 bits (138), Expect = 5e-07, Method: Composition-based stats.
Identities = 32/93 (34%), Positives = 49/93 (52%), Gaps = 7/93 (7%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M+KS L+ I+KKNP L+ + V KI+N+ + + L NG RVE+RGFGSF+VR
Sbjct: 1 MLKSHLVQHISKKNPSLSEEIVSKILNIFFSLIIEYLKNGYRVELRGFGSFTVRSY---- 56
Query: 61 ARAPLA-QKVISVEEKMVPFFRAGKNLKERLNS 92
++ + +FRA + +N
Sbjct: 57 --NIKTVNTRLTKNKYRKVYFRASNKFIKLINQ 87
>gi|57239343|ref|YP_180479.1| putative integration host factor beta-subunit [Ehrlichia
ruminantium str. Welgevonden]
gi|58579309|ref|YP_197521.1| putative integration host factor beta-subunit [Ehrlichia
ruminantium str. Welgevonden]
gi|58617363|ref|YP_196562.1| putative integration host factor beta-subunit [Ehrlichia
ruminantium str. Gardel]
gi|57161422|emb|CAH58346.1| putative integration host factor beta subunit [Ehrlichia
ruminantium str. Welgevonden]
gi|58416975|emb|CAI28088.1| Putative Integration host factor beta-subunit [Ehrlichia
ruminantium str. Gardel]
gi|58417935|emb|CAI27139.1| Putative Integration host factor beta-subunit [Ehrlichia
ruminantium str. Welgevonden]
Length = 87
Score = 57.5 bits (138), Expect = 6e-07, Method: Composition-based stats.
Identities = 28/92 (30%), Positives = 47/92 (51%), Gaps = 5/92 (5%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M+KS LI I+KKNP L+ V +I++ + + L + RVE+RGFG+F+VR +
Sbjct: 1 MLKSHLIQHISKKNPSLSEDIVSRILHTFFSLIVEYLKDNHRVELRGFGAFTVRTYNIKT 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
A ++ + +FR + +N
Sbjct: 61 A-----NTRLTKNKYQKVYFRPSNKFIKLINQ 87
>gi|237740736|ref|ZP_04571217.1| DNA-binding protein HU [Fusobacterium sp. 2_1_31]
gi|229422753|gb|EEO37800.1| DNA-binding protein HU [Fusobacterium sp. 2_1_31]
Length = 102
Score = 57.5 bits (138), Expect = 6e-07, Method: Composition-based stats.
Identities = 25/66 (37%), Positives = 35/66 (53%), Gaps = 1/66 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K + AKK +L +D E++V LE + +AL G V GFGS+ V++RAAR
Sbjct: 1 MTKKEFVDAFAKK-GELKIKDSERLVAAFLETVEEALLKGEGVRFIGFGSWEVKERAARE 59
Query: 61 ARAPLA 66
P
Sbjct: 60 VTNPQT 65
>gi|157964859|ref|YP_001499683.1| integration host factor alpha-subunit [Rickettsia massiliae MTU5]
gi|157844635|gb|ABV85136.1| Integration host factor alpha-subunit [Rickettsia massiliae MTU5]
Length = 119
Score = 57.5 bits (138), Expect = 6e-07, Method: Composition-based stats.
Identities = 18/92 (19%), Positives = 40/92 (43%), Gaps = 2/92 (2%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
+ K + ++ K + E+IV+ + + + +A ++ ++ FGSF V+++ R
Sbjct: 27 ITKKKIAAMLSSKL-GFSNSLCEEIVHTVFSNILE-IAKEQKLTLKNFGSFEVKQQNPRP 84
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
+ + +E K F LK +N
Sbjct: 85 GINFYTKAPVIIESKKHLRFVPSSKLKALINE 116
>gi|288927532|ref|ZP_06421379.1| integration host factor IHF alpha subunit [Prevotella sp. oral
taxon 317 str. F0108]
gi|288330366|gb|EFC68950.1| integration host factor IHF alpha subunit [Prevotella sp. oral
taxon 317 str. F0108]
Length = 638
Score = 57.5 bits (138), Expect = 6e-07, Method: Composition-based stats.
Identities = 20/89 (22%), Positives = 42/89 (47%), Gaps = 1/89 (1%)
Query: 5 SLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLARAP 64
L + KN KL+ ++ E V + + + L + +V+++G G+F V +AR +
Sbjct: 13 ELAMALVNKN-KLSLKEAENFVATMFDTLNVGLNDDKQVKLKGLGTFKVMSVSARKSVDV 71
Query: 65 LAQKVISVEEKMVPFFRAGKNLKERLNSP 93
+ I ++ + F +K+ +N P
Sbjct: 72 NTGEPIIIDGRDKISFTPDSTMKDLVNKP 100
>gi|253584114|ref|ZP_04861312.1| predicted protein [Fusobacterium varium ATCC 27725]
gi|251834686|gb|EES63249.1| predicted protein [Fusobacterium varium ATCC 27725]
Length = 97
Score = 57.5 bits (138), Expect = 6e-07, Method: Composition-based stats.
Identities = 23/94 (24%), Positives = 45/94 (47%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M + I K+N +Y++V++ +++ + + +AL G+V ++ +G F ++ A R
Sbjct: 1 MTEKEFIKFYKKRNLSRSYKEVKEKIDLFWDTILKALDEDGKVSLKDWGVFEKKEVAPRK 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSPD 94
P +K + FR G LK +N D
Sbjct: 61 IMTPRMEKERVTKAGEKISFRTGTGLKTLVNRDD 94
>gi|68171780|ref|ZP_00545125.1| Histone-like bacterial DNA-binding protein [Ehrlichia chaffeensis
str. Sapulpa]
gi|88658424|ref|YP_507220.1| integration host factor, beta subunit [Ehrlichia chaffeensis str.
Arkansas]
gi|67998805|gb|EAM85512.1| Histone-like bacterial DNA-binding protein [Ehrlichia chaffeensis
str. Sapulpa]
gi|88599881|gb|ABD45350.1| integration host factor, beta subunit [Ehrlichia chaffeensis str.
Arkansas]
Length = 87
Score = 57.5 bits (138), Expect = 6e-07, Method: Composition-based stats.
Identities = 33/92 (35%), Positives = 49/92 (53%), Gaps = 5/92 (5%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M+KS LI I+KKNP L+ + V KI+N+ + L N RVE+RGFGSF+VR +
Sbjct: 1 MLKSHLIQHISKKNPSLSEEIVSKILNIFFSLIVDYLKNDCRVELRGFGSFTVRSYNIKT 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
A ++ + +FRA + +N
Sbjct: 61 A-----NARLAKSKYKKVYFRASSKFIKIINQ 87
>gi|288803467|ref|ZP_06408899.1| DNA-binding protein HU-beta [Prevotella melaninogenica D18]
gi|288334077|gb|EFC72520.1| DNA-binding protein HU-beta [Prevotella melaninogenica D18]
Length = 91
Score = 57.5 bits (138), Expect = 6e-07, Method: Composition-based stats.
Identities = 21/65 (32%), Positives = 36/65 (55%), Gaps = 1/65 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI IA N +++ +K ++ E + +ALA G +V++ GFG+F+ +R A
Sbjct: 1 MNKTELIEKIAA-NAEVSKAVAKKALDATTEAIKEALAAGDKVQLVGFGTFATTERPAHE 59
Query: 61 ARAPL 65
P
Sbjct: 60 GINPR 64
>gi|257469402|ref|ZP_05633495.1| hypothetical protein FulcA4_08679 [Fusobacterium ulcerans ATCC
49185]
Length = 96
Score = 57.5 bits (138), Expect = 6e-07, Method: Composition-based stats.
Identities = 24/88 (27%), Positives = 45/88 (51%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M + I K+N ++++V + +++ + + +AL G+V + +G F RK +R
Sbjct: 1 MTEGEFIRFYKKRNNSKSHKEVREKIDLFWDVLFEALNEDGKVVFQDWGVFEKRKMKSRK 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKE 88
P+ ++ E K V FRAGK L +
Sbjct: 61 IMVPMWKESAYTEPKEVIKFRAGKGLIK 88
>gi|298385402|ref|ZP_06994960.1| DNA-binding protein HU [Bacteroides sp. 1_1_14]
gi|298261543|gb|EFI04409.1| DNA-binding protein HU [Bacteroides sp. 1_1_14]
Length = 91
Score = 57.1 bits (137), Expect = 7e-07, Method: Composition-based stats.
Identities = 17/91 (18%), Positives = 34/91 (37%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K ++ + ++ + V+ + + + +L G V IRGF + +
Sbjct: 1 MKKIEIVEHVINNTT-ISRSQAIQAVDCVFDAIENSLCRGESVYIRGFATIKAHTSKRKK 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
AR + + + K LK R+N
Sbjct: 60 ARNISKGTTVVIPAQRSAKLIISKQLKARMN 90
>gi|150007590|ref|YP_001302333.1| putative DNA-binding protein HU [Parabacteroides distasonis ATCC
8503]
gi|301310444|ref|ZP_07216383.1| DNA-binding protein HU [Bacteroides sp. 20_3]
gi|149936014|gb|ABR42711.1| putative DNA-binding protein HU [Parabacteroides distasonis ATCC
8503]
gi|300832018|gb|EFK62649.1| DNA-binding protein HU [Bacteroides sp. 20_3]
Length = 96
Score = 57.1 bits (137), Expect = 7e-07, Method: Composition-based stats.
Identities = 26/92 (28%), Positives = 46/92 (50%), Gaps = 1/92 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M LI +A + + +V +++ L ++ L + + ++GFG F V+K+A R+
Sbjct: 1 MKNKELITELANRMDWTSK-EVSDMLSALSSVVSSKLVDNDTIYLQGFGQFEVKKKAERI 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
+ P K V K+VP F+ G +K RL
Sbjct: 60 SVNPANGKRYLVPPKLVPVFKPGTTVKNRLKE 91
>gi|60681985|ref|YP_212129.1| hypothetical protein BF2505 [Bacteroides fragilis NCTC 9343]
gi|60493419|emb|CAH08205.1| conserved hypothetical protein [Bacteroides fragilis NCTC 9343]
Length = 483
Score = 57.1 bits (137), Expect = 7e-07, Method: Composition-based stats.
Identities = 18/88 (20%), Positives = 40/88 (45%), Gaps = 1/88 (1%)
Query: 6 LIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLARAPL 65
L+ + ++ +++ +D + V + QAL V+I+G G+F + +R +
Sbjct: 10 LVELLVNRH-EVSQEDADVFVREFFLLIEQALDADQYVKIKGLGTFKLIGVNSRESVNVN 68
Query: 66 AQKVISVEEKMVPFFRAGKNLKERLNSP 93
+ I +E F +L++ +N P
Sbjct: 69 TGERIKIEGHTKISFTPDPSLRDIINRP 96
>gi|39938803|ref|NP_950569.1| nucleoid DNA-binding protein [Onion yellows phytoplasma OY-M]
gi|39938843|ref|NP_950609.1| nucleoid DNA-binding protein [Onion yellows phytoplasma OY-M]
gi|39721912|dbj|BAD04402.1| bacterial nucleoid DNA-binding protein [Onion yellows phytoplasma
OY-M]
gi|39721952|dbj|BAD04442.1| bacterial nucleoid DNA-binding protein [Onion yellows phytoplasma
OY-M]
Length = 96
Score = 57.1 bits (137), Expect = 7e-07, Method: Composition-based stats.
Identities = 24/90 (26%), Positives = 44/90 (48%), Gaps = 2/90 (2%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALA-NGGRVEIRGFGSFSVRKRAAR 59
M K LI IA+ N K + E+ ++ + + +A+ N V G F ++ R A
Sbjct: 1 MTKKELIKKIAEVN-KTSISKTEEFYHIFEKTLIEAITTNEEVVLSPQIGKFQLKPRKAY 59
Query: 60 LARAPLAQKVISVEEKMVPFFRAGKNLKER 89
+ R P +K + + K V F+ K++K++
Sbjct: 60 IGRNPKTKKKLKIPAKTVVAFKLSKSIKDK 89
>gi|27381286|ref|NP_772815.1| DNA-binding protein HU 1 [Bradyrhizobium japonicum USDA 110]
gi|27354453|dbj|BAC51440.1| hupA [Bradyrhizobium japonicum USDA 110]
Length = 100
Score = 57.1 bits (137), Expect = 8e-07, Method: Composition-based stats.
Identities = 24/96 (25%), Positives = 40/96 (41%), Gaps = 7/96 (7%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKR---A 57
M KS LI IA +L+ +DV+ ++ L + + L G + GF F V K+
Sbjct: 5 MSKSQLIEKIATAT-ELSKRDVKSVMETLTDVGHKELKKNGLFLVPGFAKFVVIKKPATK 63
Query: 58 ARLARAPLAQKVIS---VEEKMVPFFRAGKNLKERL 90
AR P + + + + R K K+ +
Sbjct: 64 ARKGTNPFTGEEMMFKAKPARKIVRARPVKAAKDAV 99
>gi|317063649|ref|ZP_07928134.1| predicted protein [Fusobacterium ulcerans ATCC 49185]
gi|313689325|gb|EFS26160.1| predicted protein [Fusobacterium ulcerans ATCC 49185]
Length = 105
Score = 57.1 bits (137), Expect = 8e-07, Method: Composition-based stats.
Identities = 24/88 (27%), Positives = 45/88 (51%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M + I K+N ++++V + +++ + + +AL G+V + +G F RK +R
Sbjct: 10 MTEGEFIRFYKKRNNSKSHKEVREKIDLFWDVLFEALNEDGKVVFQDWGVFEKRKMKSRK 69
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKE 88
P+ ++ E K V FRAGK L +
Sbjct: 70 IMVPMWKESAYTEPKEVIKFRAGKGLIK 97
>gi|294782111|ref|ZP_06747437.1| DNA-binding protein HU [Fusobacterium sp. 1_1_41FAA]
gi|294480752|gb|EFG28527.1| DNA-binding protein HU [Fusobacterium sp. 1_1_41FAA]
Length = 102
Score = 57.1 bits (137), Expect = 8e-07, Method: Composition-based stats.
Identities = 25/66 (37%), Positives = 35/66 (53%), Gaps = 1/66 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K + AKK +L +D E++V LE + +AL G V GFGS+ V++RAAR
Sbjct: 1 MTKKEFVDAFAKK-AELKLKDSERLVAAFLETVEEALLKGEGVRFIGFGSWEVKERAARE 59
Query: 61 ARAPLA 66
P
Sbjct: 60 VTNPQT 65
>gi|198274637|ref|ZP_03207169.1| hypothetical protein BACPLE_00789 [Bacteroides plebeius DSM
17135]
gi|198272084|gb|EDY96353.1| hypothetical protein BACPLE_00789 [Bacteroides plebeius DSM
17135]
Length = 96
Score = 57.1 bits (137), Expect = 8e-07, Method: Composition-based stats.
Identities = 19/92 (20%), Positives = 45/92 (48%), Gaps = 1/92 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M I ++++ K ++ ++ E ++Q+L V ++ FGSF V K+ +
Sbjct: 1 MTNKEFIEELSRRLEK-TEKETASLLASFTECVSQSLQENKTVVLQDFGSFEVEKKMEYI 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
+ P+ ++ V ++ F++ +LK R+ +
Sbjct: 60 SVNPVTKQRFLVPPELAVSFKSATSLKGRVKN 91
>gi|257469718|ref|ZP_05633810.1| histone-like DNA-binding phage protein [Fusobacterium ulcerans
ATCC 49185]
Length = 90
Score = 57.1 bits (137), Expect = 9e-07, Method: Composition-based stats.
Identities = 19/88 (21%), Positives = 39/88 (44%), Gaps = 1/88 (1%)
Query: 1 MIKSSLIGTIAKKNPK-LNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAAR 59
M KS L ++ ++ K ++ +E + +AL G+V+ +F V +R R
Sbjct: 1 MNKSQLAELYRRETDGEISKLKALKEIDDFMETLNEALMTDGKVKFHEKATFEVLERKPR 60
Query: 60 LARAPLAQKVISVEEKMVPFFRAGKNLK 87
+ P ++ + + K F+ K +K
Sbjct: 61 VISNPATRERLEIFPKKTVKFKLSKIVK 88
>gi|289806659|ref|ZP_06537288.1| integration host factor subunit beta [Salmonella enterica subsp.
enterica serovar Typhi str. AG3]
Length = 73
Score = 57.1 bits (137), Expect = 9e-07, Method: Composition-based stats.
Identities = 26/64 (40%), Positives = 32/64 (50%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS LI +A + + + VE V +LE M LA G R+EIRGFGSF A
Sbjct: 1 MTKSELIERLATQQSHIPAKAVEDAVKEMLEHMASTLAQGERIEIRGFGSFFFALPRASY 60
Query: 61 ARAP 64
P
Sbjct: 61 RTNP 64
>gi|257470393|ref|ZP_05634484.1| hypothetical protein FulcA4_13697 [Fusobacterium ulcerans ATCC
49185]
gi|317064601|ref|ZP_07929086.1| predicted protein [Fusobacterium ulcerans ATCC 49185]
gi|313690277|gb|EFS27112.1| predicted protein [Fusobacterium ulcerans ATCC 49185]
Length = 125
Score = 56.7 bits (136), Expect = 9e-07, Method: Composition-based stats.
Identities = 19/90 (21%), Positives = 42/90 (46%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M ++ I ++N + ++ ++ ++ + + +A+ +V + +G F + +R
Sbjct: 28 MTETEFIKFYKERNGLKSKKEAKEKIDNFWKALFKAIDEDKKVVFKNWGIFEEKDVKSRK 87
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
P K I + K V FRAG+ LK +
Sbjct: 88 IVIPKHPKEIYTQPKKVLKFRAGEGLKNSV 117
>gi|254429211|ref|ZP_05042918.1| DNA-binding protein HU [Alcanivorax sp. DG881]
gi|196195380|gb|EDX90339.1| DNA-binding protein HU [Alcanivorax sp. DG881]
Length = 124
Score = 56.7 bits (136), Expect = 1e-06, Method: Composition-based stats.
Identities = 19/96 (19%), Positives = 35/96 (36%), Gaps = 9/96 (9%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKR---- 56
M K+ +I I++ L +DV + + L + M L G + G + +
Sbjct: 27 MNKTQIINQISE-TTGLTKKDVNAVFDELGDIMEGHLKKRGAGQFTLPGLLKIVTQKKPA 85
Query: 57 -AARLARAPLAQKVIS---VEEKMVPFFRAGKNLKE 88
AR P + + + + R K LK+
Sbjct: 86 TKARKGINPFTGEATTFAAKPARTMVKVRPLKKLKD 121
>gi|313665705|ref|YP_004047576.1| DNA-binding protein HU [Mycoplasma leachii PG50]
gi|312950036|gb|ADR24632.1| DNA-binding protein HU [Mycoplasma leachii PG50]
Length = 358
Score = 56.7 bits (136), Expect = 1e-06, Method: Composition-based stats.
Identities = 18/77 (23%), Positives = 37/77 (48%)
Query: 16 KLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLARAPLAQKVISVEEK 75
++ ++ I + ++ LA G + + FG F ++ A + PL Q+ I V
Sbjct: 282 EMTKVSIKTIFDKAFIVASKNLAAGDHIVLAKFGKFETIEKEAEMKINPLTQEQIEVPAH 341
Query: 76 MVPFFRAGKNLKERLNS 92
+ F+ K++KE++N
Sbjct: 342 KIVKFKLSKSIKEKMNK 358
>gi|99036035|ref|ZP_01315073.1| hypothetical protein Wendoof_01000090 [Wolbachia endosymbiont of
Drosophila willistoni TSC#14030-0811.24]
Length = 92
Score = 56.7 bits (136), Expect = 1e-06, Method: Composition-based stats.
Identities = 29/91 (31%), Positives = 47/91 (51%), Gaps = 1/91 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
KS +I +AK++P L+ + IV+ ++ L + RVEIRGFGSFSVR +
Sbjct: 3 TKSDIIARVAKRHPFLDKVVIAAIVDRFFGILSSTLKHHNRVEIRGFGSFSVRSYNLKET 62
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
L + + + +FR+ K L + +N
Sbjct: 63 SH-LMLQKFTKNQYFKTYFRSSKKLSDLINE 92
>gi|297243580|ref|ZP_06927511.1| bacterial nucleoid DNA-binding protein [Gardnerella vaginalis
AMD]
gi|298253945|ref|ZP_06977532.1| bacterial nucleoid DNA-binding protein [Gardnerella vaginalis
5-1]
gi|296888331|gb|EFH27072.1| bacterial nucleoid DNA-binding protein [Gardnerella vaginalis
AMD]
gi|297532088|gb|EFH71063.1| bacterial nucleoid DNA-binding protein [Gardnerella vaginalis
5-1]
Length = 61
Score = 56.7 bits (136), Expect = 1e-06, Method: Composition-based stats.
Identities = 16/57 (28%), Positives = 25/57 (43%)
Query: 34 TQALANGGRVEIRGFGSFSVRKRAARLARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
+AL +G +++ G S KRA R R P + I + AG LK+ +
Sbjct: 3 VEALQSGEGLKLTGLFSAERVKRAERTGRNPRTGETIKIPASYGVRISAGSLLKKAV 59
>gi|257469043|ref|ZP_05633137.1| DNA-binding protein HU [Fusobacterium ulcerans ATCC 49185]
gi|317063289|ref|ZP_07927774.1| predicted protein [Fusobacterium ulcerans ATCC 49185]
gi|313688965|gb|EFS25800.1| predicted protein [Fusobacterium ulcerans ATCC 49185]
Length = 94
Score = 56.3 bits (135), Expect = 1e-06, Method: Composition-based stats.
Identities = 21/93 (22%), Positives = 43/93 (46%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M ++ +I +K N + ++ + E + +L R+ +G+G+F V+K R+
Sbjct: 1 MKETEIIREYKEKRKLKNLKTAKEKIEAFWETLIDSLQEDERLIFKGWGTFEVKKIKERI 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSP 93
P +K+ + F+ GK LK++ N
Sbjct: 61 FNNPRTKKIEKISPINKIVFKQGKILKKKFNEE 93
>gi|110833609|ref|YP_692468.1| DNA-binding protein [Alcanivorax borkumensis SK2]
gi|110646720|emb|CAL16196.1| bacterial DNA-binding protein [Alcanivorax borkumensis SK2]
Length = 124
Score = 56.3 bits (135), Expect = 1e-06, Method: Composition-based stats.
Identities = 19/96 (19%), Positives = 35/96 (36%), Gaps = 9/96 (9%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKR---- 56
M K+ +I I++ L +DV + + L + M L G + G + +
Sbjct: 27 MNKTQIINQISE-TTGLTKKDVNAVFDQLNDIMEGHLKKRGAGQFTLPGLLKIVTQKKPA 85
Query: 57 -AARLARAPLAQKVIS---VEEKMVPFFRAGKNLKE 88
AR P + + + + R K LK+
Sbjct: 86 TKARKGINPFTGEATTFAAKPARTMVKVRPLKKLKD 121
>gi|317062494|ref|ZP_07926979.1| predicted protein [Fusobacterium ulcerans ATCC 49185]
gi|313688170|gb|EFS25005.1| predicted protein [Fusobacterium ulcerans ATCC 49185]
Length = 91
Score = 56.3 bits (135), Expect = 1e-06, Method: Composition-based stats.
Identities = 20/88 (22%), Positives = 41/88 (46%), Gaps = 1/88 (1%)
Query: 1 MIKSSLIGTIAKKNPK-LNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAAR 59
M + + ++ +P L+ E + LE + +A+A V+ G F + R R
Sbjct: 4 MNRREMAKLYSEMSPDRLSIIKAEDEIEEFLETLKEAIALDREVKFPRRGIFEILTRKPR 63
Query: 60 LARAPLAQKVISVEEKMVPFFRAGKNLK 87
+ P+ ++ +++ K + FRA K +K
Sbjct: 64 VVANPVTKEQMTIYPKKIIKFRASKKIK 91
>gi|190571428|ref|YP_001975786.1| DNA-binding protein, HU family [Wolbachia endosymbiont of Culex
quinquefasciatus Pel]
gi|213018826|ref|ZP_03334634.1| DNA-binding protein, HU family [Wolbachia endosymbiont of Culex
quinquefasciatus JHB]
gi|190357700|emb|CAQ55149.1| DNA-binding protein, HU family [Wolbachia endosymbiont of Culex
quinquefasciatus Pel]
gi|212995777|gb|EEB56417.1| DNA-binding protein, HU family [Wolbachia endosymbiont of Culex
quinquefasciatus JHB]
Length = 92
Score = 56.3 bits (135), Expect = 1e-06, Method: Composition-based stats.
Identities = 30/91 (32%), Positives = 45/91 (49%), Gaps = 1/91 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
KS +I +AKKN L+ + IV+ + L RVEIRGFGSFS+R + A
Sbjct: 3 TKSDIIAKVAKKNLLLDKVIIAAIVDSFFRVFSNTLKYHNRVEIRGFGSFSIRSYNLKEA 62
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
L + ++ + +FR+ K L +N
Sbjct: 63 SN-LTSQKVAKHQYFKTYFRSSKKLSLLINE 92
>gi|317063950|ref|ZP_07928435.1| predicted protein [Fusobacterium ulcerans ATCC 49185]
gi|313689626|gb|EFS26461.1| predicted protein [Fusobacterium ulcerans ATCC 49185]
Length = 96
Score = 56.3 bits (135), Expect = 1e-06, Method: Composition-based stats.
Identities = 19/88 (21%), Positives = 39/88 (44%), Gaps = 1/88 (1%)
Query: 1 MIKSSLIGTIAKKNPK-LNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAAR 59
M KS L ++ ++ K ++ +E + +AL G+V+ +F V +R R
Sbjct: 7 MNKSQLAELYRRETDGEISKLKALKEIDDFMETLNEALMTDGKVKFHEKATFEVLERKPR 66
Query: 60 LARAPLAQKVISVEEKMVPFFRAGKNLK 87
+ P ++ + + K F+ K +K
Sbjct: 67 VISNPATRERLEIFPKKTVKFKLSKIVK 94
>gi|253582641|ref|ZP_04859862.1| predicted protein [Fusobacterium varium ATCC 27725]
gi|251835511|gb|EES64051.1| predicted protein [Fusobacterium varium ATCC 27725]
Length = 97
Score = 56.3 bits (135), Expect = 1e-06, Method: Composition-based stats.
Identities = 22/94 (23%), Positives = 47/94 (50%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M ++ I ++N NY++ ++ +++ + +AL +V ++ +G+F ++ R
Sbjct: 1 MTEAEFIRYYKRRNKSKNYKEAKEKIDLFWNSLLKALGEAEKVSLKNWGTFEKKEVKPRR 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSPD 94
P +KV + K V F+AG L+ +N D
Sbjct: 61 IVIPNMEKVTITKAKKVIKFKAGAGLRNVVNEVD 94
>gi|115525842|ref|YP_782753.1| histone family protein DNA-binding protein [Rhodopseudomonas
palustris BisA53]
gi|115519789|gb|ABJ07773.1| histone family protein DNA-binding protein [Rhodopseudomonas
palustris BisA53]
Length = 99
Score = 56.3 bits (135), Expect = 1e-06, Method: Composition-based stats.
Identities = 23/95 (24%), Positives = 39/95 (41%), Gaps = 7/95 (7%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKR---AA 58
KS LI IA + +L +DV+ ++ + E + L G + GF F V K+ A
Sbjct: 6 TKSQLIEKIATQT-ELAKRDVKGVLEAMSEIGYKELKKNGLFLVPGFAKFVVIKKPATKA 64
Query: 59 RLARAPLAQKVIS---VEEKMVPFFRAGKNLKERL 90
R P + + + + R K K+ +
Sbjct: 65 RKGTNPFTGEPMVFKAKPARKIVRARPVKAAKDAV 99
>gi|309775495|ref|ZP_07670496.1| DNA-binding protein HU [Erysipelotrichaceae bacterium 3_1_53]
gi|313897383|ref|ZP_07830926.1| DNA-binding protein HU 1 [Clostridium sp. HGF2]
gi|308916753|gb|EFP62492.1| DNA-binding protein HU [Erysipelotrichaceae bacterium 3_1_53]
gi|312957753|gb|EFR39378.1| DNA-binding protein HU 1 [Clostridium sp. HGF2]
Length = 94
Score = 56.3 bits (135), Expect = 1e-06, Method: Composition-based stats.
Identities = 20/71 (28%), Positives = 41/71 (57%), Gaps = 1/71 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K +L+ +A+K ++ +D V + +E+ + L+ GG+V+I GFG F + +R AR+
Sbjct: 6 NKKALVEVVAEKL-EMTKKDATVAVETVFDEIAKTLSEGGKVDISGFGKFEISERPARMG 64
Query: 62 RAPLAQKVISV 72
P ++ + +
Sbjct: 65 INPATKEPLEI 75
>gi|329942725|ref|ZP_08291504.1| bacterial DNA-binding family protein [Chlamydophila psittaci
Cal10]
gi|328814985|gb|EGF84974.1| bacterial DNA-binding family protein [Chlamydophila psittaci
Cal10]
Length = 66
Score = 56.3 bits (135), Expect = 1e-06, Method: Composition-based stats.
Identities = 20/64 (31%), Positives = 29/64 (45%), Gaps = 1/64 (1%)
Query: 33 MTQALANGGRVEIRGFGSFSVRKRAARLARAPLAQK-VISVEEKMVPFFRAGKNLKERLN 91
MT AL G R+E R FG V +R ++ R P I + + F GK +K +
Sbjct: 1 MTDALVKGDRLEFRDFGVLQVVERKPKVGRNPKNATVPIHIPARRAVKFTPGKRMKRLIE 60
Query: 92 SPDS 95
+P
Sbjct: 61 TPSK 64
>gi|317062390|ref|ZP_07926875.1| predicted protein [Fusobacterium ulcerans ATCC 49185]
gi|313688066|gb|EFS24901.1| predicted protein [Fusobacterium ulcerans ATCC 49185]
Length = 92
Score = 56.3 bits (135), Expect = 1e-06, Method: Composition-based stats.
Identities = 19/88 (21%), Positives = 40/88 (45%), Gaps = 1/88 (1%)
Query: 1 MIKSSLIGTIAKKNPK-LNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAAR 59
M + + ++ +P L+ E + LE + +A+ V+ G F + R R
Sbjct: 5 MNRREMAKLYSEMSPDRLSIIKSEDEIEEFLETVKEAIVLDREVKFPRRGIFEILTRKPR 64
Query: 60 LARAPLAQKVISVEEKMVPFFRAGKNLK 87
+ P+ ++ +++ K + FRA K +K
Sbjct: 65 VVANPVTKEQMTIYPKKIIKFRASKKMK 92
>gi|115526040|ref|YP_782951.1| histone family protein DNA-binding protein [Rhodopseudomonas
palustris BisA53]
gi|115519987|gb|ABJ07971.1| histone family protein DNA-binding protein [Rhodopseudomonas
palustris BisA53]
Length = 99
Score = 56.3 bits (135), Expect = 1e-06, Method: Composition-based stats.
Identities = 26/96 (27%), Positives = 42/96 (43%), Gaps = 7/96 (7%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKR---A 57
M KS LI IA K+ +L +DV+ ++ L E + L G + GF F V K+
Sbjct: 5 MTKSQLIEKIATKS-ELAKKDVKGVIETLAEIGYKELKKNGVFLVPGFAKFVVIKKPATK 63
Query: 58 ARLARAPLAQKVIS---VEEKMVPFFRAGKNLKERL 90
AR P + ++ + + R K K+ +
Sbjct: 64 ARKGTNPFTGEAMTFKAKPARKIVRARPVKAAKDAV 99
>gi|315644375|ref|ZP_07897515.1| histone family protein DNA-binding protein [Paenibacillus vortex
V453]
gi|315280252|gb|EFU43544.1| histone family protein DNA-binding protein [Paenibacillus vortex
V453]
Length = 61
Score = 56.3 bits (135), Expect = 1e-06, Method: Composition-based stats.
Identities = 24/51 (47%), Positives = 35/51 (68%), Gaps = 1/51 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSF 51
M K+ LI I+ K+ L +DVE ++N L E+T ALANG +V++ GFG+F
Sbjct: 1 MNKTDLINNISGKS-GLTKKDVENVLNGFLGEITDALANGDKVQLIGFGTF 50
>gi|257468209|ref|ZP_05632305.1| hypothetical protein FulcA4_02657 [Fusobacterium ulcerans ATCC
49185]
Length = 88
Score = 56.3 bits (135), Expect = 1e-06, Method: Composition-based stats.
Identities = 20/88 (22%), Positives = 41/88 (46%), Gaps = 1/88 (1%)
Query: 1 MIKSSLIGTIAKKNPK-LNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAAR 59
M + + ++ +P L+ E + LE + +A+A V+ G F + R R
Sbjct: 1 MNRREMAKLYSEMSPDRLSIIKAEDEIEEFLETLKEAIALDREVKFPRRGIFEILTRKPR 60
Query: 60 LARAPLAQKVISVEEKMVPFFRAGKNLK 87
+ P+ ++ +++ K + FRA K +K
Sbjct: 61 VVANPVTKEQMTIYPKKIIKFRASKKIK 88
>gi|154492265|ref|ZP_02031891.1| hypothetical protein PARMER_01899 [Parabacteroides merdae ATCC
43184]
gi|154087490|gb|EDN86535.1| hypothetical protein PARMER_01899 [Parabacteroides merdae ATCC
43184]
Length = 384
Score = 56.3 bits (135), Expect = 1e-06, Method: Composition-based stats.
Identities = 16/90 (17%), Positives = 36/90 (40%), Gaps = 1/90 (1%)
Query: 4 SSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLARA 63
L G +A+ + E+ + + +++ + V+++G G+F + R +
Sbjct: 8 QDLAGLLAE-YTGKDKNSSERFLREFIAVVSEGVYTDKLVKVKGLGTFKIIPVEKRESIH 66
Query: 64 PLAQKVISVEEKMVPFFRAGKNLKERLNSP 93
+ + E F K L+E +N P
Sbjct: 67 VNTGERFVIPEHYKFSFLPDKELRELVNKP 96
>gi|58698449|ref|ZP_00373358.1| DNA-binding protein, HU family [Wolbachia endosymbiont of
Drosophila ananassae]
gi|225630819|ref|YP_002727610.1| DNA-binding protein, HU family [Wolbachia sp. wRi]
gi|58535041|gb|EAL59131.1| DNA-binding protein, HU family [Wolbachia endosymbiont of
Drosophila ananassae]
gi|225592800|gb|ACN95819.1| DNA-binding protein, HU family [Wolbachia sp. wRi]
Length = 92
Score = 56.3 bits (135), Expect = 1e-06, Method: Composition-based stats.
Identities = 29/91 (31%), Positives = 47/91 (51%), Gaps = 1/91 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
KS +I +AK++P L+ + IV+ ++ L + RVEIRGFGSFSVR +
Sbjct: 3 TKSDIIARVAKRHPFLDKIVIAAIVDRFFGILSSTLKHHNRVEIRGFGSFSVRSYNLKET 62
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
L + + + +FR+ K L + +N
Sbjct: 63 SH-LMLQKFTKNQYFKTYFRSSKKLSDLVNE 92
>gi|300727619|ref|ZP_07061008.1| DNA-binding protein HU [Prevotella bryantii B14]
gi|299775139|gb|EFI71742.1| DNA-binding protein HU [Prevotella bryantii B14]
Length = 521
Score = 55.9 bits (134), Expect = 2e-06, Method: Composition-based stats.
Identities = 23/96 (23%), Positives = 43/96 (44%), Gaps = 4/96 (4%)
Query: 1 MIK---SSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRA 57
M K + L + KL+ D E+ V ++ + + + L +V+I+GFG+F V
Sbjct: 1 MSKIGVNELAKVLVN-THKLSVDDAEQFVRLMFDTVNEGLQEDKQVKIKGFGTFKVLSVK 59
Query: 58 ARLARAPLAQKVISVEEKMVPFFRAGKNLKERLNSP 93
R + + I +E + F +K+ +N P
Sbjct: 60 DRESVDVNTGERIIIEGRDKISFTPDAIVKDIVNKP 95
>gi|160937344|ref|ZP_02084706.1| hypothetical protein CLOBOL_02234 [Clostridium bolteae ATCC
BAA-613]
gi|158439908|gb|EDP17657.1| hypothetical protein CLOBOL_02234 [Clostridium bolteae ATCC
BAA-613]
Length = 94
Score = 55.9 bits (134), Expect = 2e-06, Method: Composition-based stats.
Identities = 27/92 (29%), Positives = 46/92 (50%), Gaps = 1/92 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
MIK L IA++ ++ K++++L E + L G V + G G +VR+ A+
Sbjct: 1 MIKKKLAIQIAQRIGN-GREETTKLLDVLCEVLGDTLDAGVFVHLTGLGRLTVREYPAQK 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
P + I++ K P F+A K+LK + N
Sbjct: 60 GFDPRTRGFINMAAKKSPVFKANKSLKGKSNE 91
>gi|154492266|ref|ZP_02031892.1| hypothetical protein PARMER_01900 [Parabacteroides merdae ATCC
43184]
gi|218261906|ref|ZP_03476579.1| hypothetical protein PRABACTJOHN_02250 [Parabacteroides johnsonii
DSM 18315]
gi|154087491|gb|EDN86536.1| hypothetical protein PARMER_01900 [Parabacteroides merdae ATCC
43184]
gi|218223700|gb|EEC96350.1| hypothetical protein PRABACTJOHN_02250 [Parabacteroides johnsonii
DSM 18315]
Length = 100
Score = 55.9 bits (134), Expect = 2e-06, Method: Composition-based stats.
Identities = 25/92 (27%), Positives = 47/92 (51%), Gaps = 1/92 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M L+ +A + Q+V + +++L ++ L + + ++GFG F V+K+A R+
Sbjct: 5 MKNKELVTELAARM-GWTAQEVAETLSVLSSVVSSRLVDNDTIYLQGFGQFEVKKKAERI 63
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
+ P K V K+VP F+ G +K +L
Sbjct: 64 SVNPSNGKRYLVPPKLVPVFKPGTTVKNKLKE 95
>gi|253582551|ref|ZP_04859772.1| predicted protein [Fusobacterium varium ATCC 27725]
gi|251835421|gb|EES63961.1| predicted protein [Fusobacterium varium ATCC 27725]
Length = 112
Score = 55.9 bits (134), Expect = 2e-06, Method: Composition-based stats.
Identities = 18/97 (18%), Positives = 42/97 (43%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M ++ I ++N + ++ ++ ++ + +A++ RV + +G F + +R
Sbjct: 15 MKEAEFIKFYKERNEIKSKKEAKEKIDSFWNALFKAVSEEKRVMFKDWGVFEEKDVKSRK 74
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDSTL 97
P + + K V FRAG L + +N +
Sbjct: 75 IVIPRQLQEAYTQPKKVLKFRAGGKLIQSVNKRGENI 111
>gi|330968518|gb|EGH68778.1| HU family DNA-binding protein [Pseudomonas syringae pv.
actinidiae str. M302091]
Length = 58
Score = 55.9 bits (134), Expect = 2e-06, Method: Composition-based stats.
Identities = 18/58 (31%), Positives = 24/58 (41%)
Query: 35 QALANGGRVEIRGFGSFSVRKRAARLARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
L NG + + G G V +R AR R P I + K V F K L + +N
Sbjct: 1 DQLENGVEITLPGIGKLKVAERPARTGRNPSTGAAIEIAAKKVIKFVPAKVLTDSINK 58
>gi|261879548|ref|ZP_06005975.1| conserved hypothetical protein [Prevotella bergensis DSM 17361]
gi|270333774|gb|EFA44560.1| conserved hypothetical protein [Prevotella bergensis DSM 17361]
Length = 494
Score = 55.9 bits (134), Expect = 2e-06, Method: Composition-based stats.
Identities = 20/96 (20%), Positives = 42/96 (43%), Gaps = 4/96 (4%)
Query: 1 MIK---SSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRA 57
M K L + K L+ E V ++ + + L + + +I+G G+F + + A
Sbjct: 1 MNKIGNKELARLLVDKF-GLDRAASEDFVRLIFDVVNDGLKDDSQAKIKGLGTFKITRVA 59
Query: 58 ARLARAPLAQKVISVEEKMVPFFRAGKNLKERLNSP 93
R + + I +E + F A +++ ++N P
Sbjct: 60 PRKSVDVNTGEPIIIEGRDKMSFTADVSMRNQVNRP 95
>gi|298251892|ref|ZP_06975695.1| histone family protein DNA-binding protein [Ktedonobacter racemifer
DSM 44963]
gi|297546484|gb|EFH80352.1| histone family protein DNA-binding protein [Ktedonobacter racemifer
DSM 44963]
Length = 120
Score = 55.9 bits (134), Expect = 2e-06, Method: Composition-based stats.
Identities = 22/97 (22%), Positives = 45/97 (46%), Gaps = 1/97 (1%)
Query: 3 KSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLAR 62
K LI +A K +N ++ KI++ + + + ++ G V + GFG++++R A R +
Sbjct: 13 KDELIHQVAAK-AGMNLKETSKIIDAFTDVVREDVSQGHEVRLMGFGTWNLRDVAPRKVK 71
Query: 63 APLAQKVISVEEKMVPFFRAGKNLKERLNSPDSTLSN 99
+ I++ + F G L + + T S
Sbjct: 72 SIRGGDQITIPARKRVGFSVGAVLSQAAQGAEHTRSK 108
>gi|160915098|ref|ZP_02077311.1| hypothetical protein EUBDOL_01106 [Eubacterium dolichum DSM 3991]
gi|158432897|gb|EDP11186.1| hypothetical protein EUBDOL_01106 [Eubacterium dolichum DSM 3991]
Length = 94
Score = 55.9 bits (134), Expect = 2e-06, Method: Composition-based stats.
Identities = 25/71 (35%), Positives = 41/71 (57%), Gaps = 1/71 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K +L ++A+K ++ +D V+ + EE+T LA GG+VEI GFG F V +R R+
Sbjct: 6 NKKALAESLAEKL-EMTKKDAGVAVDTVFEEITAILAKGGKVEISGFGKFEVAERPERMG 64
Query: 62 RAPLAQKVISV 72
P ++ I +
Sbjct: 65 INPATKEQIKI 75
>gi|299140823|ref|ZP_07033961.1| DNA-binding protein HU [Prevotella oris C735]
gi|298577789|gb|EFI49657.1| DNA-binding protein HU [Prevotella oris C735]
Length = 423
Score = 55.9 bits (134), Expect = 2e-06, Method: Composition-based stats.
Identities = 18/94 (19%), Positives = 42/94 (44%), Gaps = 2/94 (2%)
Query: 1 MIK-SSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAAR 59
M + + K+ L D E + ++++ + + + +V+I+G G+F + ++R
Sbjct: 15 MTNMKDIARCLVDKH-GLKVADAEHFIALMIDVINEGVQRERQVKIKGLGTFKLTSVSSR 73
Query: 60 LARAPLAQKVISVEEKMVPFFRAGKNLKERLNSP 93
+ + I +E + F +KE +N P
Sbjct: 74 ESVDVNTGERIVIEGRDKISFTPDNAMKELVNRP 107
>gi|84996135|ref|XP_952789.1| bacterial histone-like protein [Theileria annulata strain Ankara]
gi|65303786|emb|CAI76163.1| bacterial histone-like protein, putative [Theileria annulata]
Length = 170
Score = 55.9 bits (134), Expect = 2e-06, Method: Composition-based stats.
Identities = 20/98 (20%), Positives = 38/98 (38%), Gaps = 1/98 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K ++ + +K ++V ++V+ L + + L+N V + FG F R R
Sbjct: 66 NKRDIVSEVGEKL-NKTQKEVGQVVDEFLSSIKRHLSNDSEVSLSKFGVFKNSLRGERRM 124
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDSTLSN 99
R ++ + + VP R K LN +
Sbjct: 125 RNLQTGEIFTAKPVHVPTLRFYDTFKAELNDKLKSKDK 162
>gi|317062955|ref|ZP_07927440.1| predicted protein [Fusobacterium ulcerans ATCC 49185]
gi|313688631|gb|EFS25466.1| predicted protein [Fusobacterium ulcerans ATCC 49185]
Length = 92
Score = 55.9 bits (134), Expect = 2e-06, Method: Composition-based stats.
Identities = 22/88 (25%), Positives = 38/88 (43%), Gaps = 1/88 (1%)
Query: 1 MIKSSLIGTIAKKNP-KLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAAR 59
M K L K +P ++ K + LE + +++A V G F + R R
Sbjct: 5 MNKRELAKVYVKMSPKNISIVQAVKEIEEFLETLKESIALDNEVGFPKRGVFEILTRQPR 64
Query: 60 LARAPLAQKVISVEEKMVPFFRAGKNLK 87
+ P+ ++ ++V K FRA K +K
Sbjct: 65 VVANPVTRERMTVYPKKTVKFRASKKIK 92
>gi|91204996|ref|YP_537351.1| integration host factor alpha-subunit [Rickettsia bellii
RML369-C]
gi|157827672|ref|YP_001496736.1| integration host factor alpha-subunit [Rickettsia bellii OSU
85-389]
gi|91068540|gb|ABE04262.1| Integration host factor alpha-subunit [Rickettsia bellii
RML369-C]
gi|157802976|gb|ABV79699.1| Integration host factor alpha-subunit [Rickettsia bellii OSU
85-389]
Length = 84
Score = 55.9 bits (134), Expect = 2e-06, Method: Composition-based stats.
Identities = 18/79 (22%), Positives = 36/79 (45%), Gaps = 1/79 (1%)
Query: 16 KLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLARAPLAQKVISVEEK 75
+ E++VN + + +A ++ ++ FGSF V+ + +R + I++E K
Sbjct: 7 GFSKSLCEEVVNAVFTNILD-IAKEQKLILKNFGSFEVKHKNSRPGINFHTKSQITIEPK 65
Query: 76 MVPFFRAGKNLKERLNSPD 94
+ F LK +N D
Sbjct: 66 NILRFVPSAKLKALINEND 84
>gi|80159860|ref|YP_398604.1| histone-like DNA binding protein [Clostridium phage c-st]
gi|78675450|dbj|BAE47872.1| histone-like DNA binding protein [Clostridium phage c-st]
Length = 86
Score = 55.9 bits (134), Expect = 2e-06, Method: Composition-based stats.
Identities = 21/86 (24%), Positives = 43/86 (50%), Gaps = 1/86 (1%)
Query: 7 IGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLARAPLA 66
+ + K K++ +D++ I +++LE + + + G++ G+F R AR+ R P +
Sbjct: 2 VEKLEGKEVKVSKKDMDAIYSVVLETVAEVVKEEGKLTTP-IGTFKNTTRGARVGRNPRS 60
Query: 67 QKVISVEEKMVPFFRAGKNLKERLNS 92
+ I + E F+ K +KE N
Sbjct: 61 GEEIQIAESHALTFKQSKAVKEEFNK 86
>gi|83310262|ref|YP_420526.1| nucleoid DNA-binding protein [Magnetospirillum magneticum AMB-1]
gi|82945103|dbj|BAE49967.1| Bacterial nucleoid DNA-binding protein [Magnetospirillum
magneticum AMB-1]
Length = 89
Score = 55.9 bits (134), Expect = 2e-06, Method: Composition-based stats.
Identities = 25/90 (27%), Positives = 37/90 (41%), Gaps = 1/90 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS++ I ++ + + V L + + GR + GFGSFS +R AR
Sbjct: 1 MSKSAMSKAI-RQAAGCSVAQADAAVEAALAAIVDGVKTEGRFSLIGFGSFSKSERPARQ 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P K I + F LK+ L
Sbjct: 60 GRNPRTGKTIDIAASTSIKFSTSAALKKSL 89
>gi|257468105|ref|ZP_05632201.1| hypothetical protein FulcA4_02137 [Fusobacterium ulcerans ATCC
49185]
Length = 88
Score = 55.9 bits (134), Expect = 2e-06, Method: Composition-based stats.
Identities = 19/88 (21%), Positives = 40/88 (45%), Gaps = 1/88 (1%)
Query: 1 MIKSSLIGTIAKKNPK-LNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAAR 59
M + + ++ +P L+ E + LE + +A+ V+ G F + R R
Sbjct: 1 MNRREMAKLYSEMSPDRLSIIKSEDEIEEFLETVKEAIVLDREVKFPRRGIFEILTRKPR 60
Query: 60 LARAPLAQKVISVEEKMVPFFRAGKNLK 87
+ P+ ++ +++ K + FRA K +K
Sbjct: 61 VVANPVTKEQMTIYPKKIIKFRASKKMK 88
>gi|530471|emb|CAA83809.1| DNA-bind. protein HU [Mycoplasma capricolum subsp. capricolum
ATCC 27343]
Length = 90
Score = 55.9 bits (134), Expect = 2e-06, Method: Composition-based stats.
Identities = 20/89 (22%), Positives = 42/89 (47%), Gaps = 2/89 (2%)
Query: 6 LIGTIAK--KNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLARA 63
L+ + + + ++ ++ I + ++ LA G V + FG F ++ A++
Sbjct: 2 LLEELYEDPEFVEMTKVSIKTIFDKAFIVASKNLAAGDHVVLAKFGKFETIEKEAQMKMN 61
Query: 64 PLAQKVISVEEKMVPFFRAGKNLKERLNS 92
P Q+ I V V F+ K++KE++N
Sbjct: 62 PSTQEEIEVPAHKVVKFKLSKSIKEKMNK 90
>gi|42520895|ref|NP_966810.1| HU family DNA-binding protein [Wolbachia endosymbiont of
Drosophila melanogaster]
gi|42410636|gb|AAS14744.1| DNA-binding protein, HU family [Wolbachia endosymbiont of
Drosophila melanogaster]
Length = 92
Score = 55.9 bits (134), Expect = 2e-06, Method: Composition-based stats.
Identities = 29/91 (31%), Positives = 47/91 (51%), Gaps = 1/91 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
KS +I +AK++P L+ + IV+ ++ L + RVEIRGFGSFSVR +
Sbjct: 3 TKSDIIARVAKRHPFLDKIVIAAIVDRFFGILSSTLKHHNRVEIRGFGSFSVRSYNLKET 62
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
L + + + +FR+ K L + +N
Sbjct: 63 SH-LMLQKFTKNQYFKTYFRSSKKLSDLINE 92
>gi|270643381|ref|ZP_06222167.1| DNA-binding protein HU-2 [Haemophilus influenzae HK1212]
gi|270317269|gb|EFA28837.1| DNA-binding protein HU-2 [Haemophilus influenzae HK1212]
Length = 46
Score = 55.9 bits (134), Expect = 2e-06, Method: Composition-based stats.
Identities = 18/44 (40%), Positives = 24/44 (54%)
Query: 48 FGSFSVRKRAARLARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
FG+F V +RAAR R P I + VP F +GK LK+ +
Sbjct: 3 FGTFKVNERAARTGRNPQTGAEIQIAASKVPAFVSGKALKDAIK 46
>gi|71028204|ref|XP_763745.1| hypothetical protein [Theileria parva strain Muguga]
gi|68350699|gb|EAN31462.1| hypothetical protein, conserved [Theileria parva]
Length = 167
Score = 55.9 bits (134), Expect = 2e-06, Method: Composition-based stats.
Identities = 20/97 (20%), Positives = 38/97 (39%), Gaps = 1/97 (1%)
Query: 3 KSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLAR 62
K ++ + ++ ++V ++V+ L + + L+N V + FG F R R R
Sbjct: 64 KRDIVSEVGERL-NKTQKEVGQVVDEFLSSIKRHLSNDAEVSLPRFGVFKNSMRGERRMR 122
Query: 63 APLAQKVISVEEKMVPFFRAGKNLKERLNSPDSTLSN 99
++ + + VP R K LN T
Sbjct: 123 NLQTGEIFTAKPVHVPTLRFYDTFKAELNHKLKTKDK 159
>gi|281491375|ref|YP_003353355.1| DNA-binding protein HU [Lactococcus lactis subsp. lactis KF147]
gi|281375116|gb|ADA64634.1| DNA-binding protein HU [Lactococcus lactis subsp. lactis KF147]
Length = 108
Score = 55.5 bits (133), Expect = 2e-06, Method: Composition-based stats.
Identities = 31/85 (36%), Positives = 47/85 (55%), Gaps = 8/85 (9%)
Query: 3 KSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLAR 62
K LI +A + +L+ + K +T ++ G V I FG+F VRKRAAR++
Sbjct: 4 KQELIDYVADRT-ELSKLNAAKA-------ITYYISEGTPVHISNFGTFEVRKRAARVSH 55
Query: 63 APLAQKVISVEEKMVPFFRAGKNLK 87
+++ I V E+ +P FRAGK LK
Sbjct: 56 DVHSREKILVGEQNIPVFRAGKALK 80
>gi|294340617|emb|CAZ89007.1| putative Integration host factor (IHF) [Thiomonas sp. 3As]
Length = 107
Score = 55.5 bits (133), Expect = 2e-06, Method: Composition-based stats.
Identities = 29/75 (38%), Positives = 40/75 (53%)
Query: 12 KKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLARAPLAQKVIS 71
+ +P L +D E+ ++L + +A+A G RVEIR FG FS R A L R+P K +
Sbjct: 3 ESHPHLARKDAEEAGEVILNGIMRAVAEGKRVEIRNFGVFSASLRKAHLTRSPKTAKPVP 62
Query: 72 VEEKMVPFFRAGKNL 86
P FRA K L
Sbjct: 63 KASARFPKFRADKPL 77
>gi|255021291|ref|ZP_05293339.1| histone family protein DNA-binding protein [Acidithiobacillus
caldus ATCC 51756]
gi|254969154|gb|EET26668.1| histone family protein DNA-binding protein [Acidithiobacillus
caldus ATCC 51756]
Length = 43
Score = 55.5 bits (133), Expect = 2e-06, Method: Composition-based stats.
Identities = 14/43 (32%), Positives = 21/43 (48%)
Query: 49 GSFSVRKRAARLARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
S +R AR R P + I + P F+AGK L++ +N
Sbjct: 1 MVLSGGEREARKGRNPATGQEIMIAASRTPEFKAGKALRDAVN 43
>gi|281425613|ref|ZP_06256526.1| putative integration host factor IHF alpha subunit [Prevotella
oris F0302]
gi|281400200|gb|EFB31031.1| putative integration host factor IHF alpha subunit [Prevotella
oris F0302]
Length = 421
Score = 55.5 bits (133), Expect = 2e-06, Method: Composition-based stats.
Identities = 18/94 (19%), Positives = 42/94 (44%), Gaps = 2/94 (2%)
Query: 1 MIK-SSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAAR 59
M + + K+ L D E + ++++ + + + +V+I+G G+F + ++R
Sbjct: 6 MTNMKDIARCLVDKH-GLKVADAEHFIALMIDVINEGVQRERQVKIKGLGTFKLTSVSSR 64
Query: 60 LARAPLAQKVISVEEKMVPFFRAGKNLKERLNSP 93
+ + I +E + F +KE +N P
Sbjct: 65 ESVDVNTGERIVIEGRDKISFTPDNAMKELVNRP 98
>gi|27379515|ref|NP_771044.1| histone-like protein [Bradyrhizobium japonicum USDA 110]
gi|27352667|dbj|BAC49669.1| histone-like protein [Bradyrhizobium japonicum USDA 110]
Length = 140
Score = 55.5 bits (133), Expect = 2e-06, Method: Composition-based stats.
Identities = 21/96 (21%), Positives = 36/96 (37%), Gaps = 7/96 (7%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRA--- 57
M K+ LI IA+ +L DV+ ++ + + L G I GF SV +
Sbjct: 46 MTKTQLIDAIAE-GTQLAKNDVKSVIEYMATVGYKELNESGEFVIPGFVKMSVVNKPATE 104
Query: 58 ARLARAPLAQKVIS---VEEKMVPFFRAGKNLKERL 90
AR+ P ++ + K K+ +
Sbjct: 105 ARMGVNPFTKEPMQFAAKPASKSVKASPLKVAKDAV 140
>gi|90425234|ref|YP_533604.1| histone-like DNA-binding protein [Rhodopseudomonas palustris
BisB18]
gi|90107248|gb|ABD89285.1| histone-like DNA-binding protein [Rhodopseudomonas palustris
BisB18]
Length = 99
Score = 55.5 bits (133), Expect = 2e-06, Method: Composition-based stats.
Identities = 24/96 (25%), Positives = 41/96 (42%), Gaps = 7/96 (7%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKR---A 57
M KS LI IA ++ +L +DV+ ++ + E + L G + GF F V K+
Sbjct: 5 MTKSQLIEKIATQS-ELAKKDVKGVLEAMTEIGYKELKKNGVFLVPGFAKFVVIKKPATK 63
Query: 58 ARLARAPLAQKVIS---VEEKMVPFFRAGKNLKERL 90
AR P + + + + R K K+ +
Sbjct: 64 ARKGTNPFNGEPMVFKAKPARKIVRARPVKAAKDSV 99
>gi|257468700|ref|ZP_05632794.1| hypothetical protein FulcA4_05120 [Fusobacterium ulcerans ATCC
49185]
Length = 88
Score = 55.5 bits (133), Expect = 2e-06, Method: Composition-based stats.
Identities = 22/88 (25%), Positives = 38/88 (43%), Gaps = 1/88 (1%)
Query: 1 MIKSSLIGTIAKKNP-KLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAAR 59
M K L K +P ++ K + LE + +++A V G F + R R
Sbjct: 1 MNKRELAKVYVKMSPKNISIVQAVKEIEEFLETLKESIALDNEVGFPKRGVFEILTRQPR 60
Query: 60 LARAPLAQKVISVEEKMVPFFRAGKNLK 87
+ P+ ++ ++V K FRA K +K
Sbjct: 61 VVANPVTRERMTVYPKKTVKFRASKKIK 88
>gi|226357785|ref|YP_002787525.1| DNA-binding protein HU [Deinococcus deserti VCD115]
gi|226320028|gb|ACO48021.1| putative DNA-binding protein HU [Deinococcus deserti VCD115]
Length = 166
Score = 55.5 bits (133), Expect = 2e-06, Method: Composition-based stats.
Identities = 17/69 (24%), Positives = 31/69 (44%)
Query: 18 NYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLARAPLAQKVISVEEKMV 77
++ V++ LE + +A+ G V + G G+ S+R+ AAR P + I +
Sbjct: 8 TRVQSQQAVDVFLESVLEAVRTGKSVGLAGLGTLSIRETAARTGVRPGTSERIQIPAGKK 67
Query: 78 PFFRAGKNL 86
F+ L
Sbjct: 68 VAFKVATTL 76
>gi|294056334|ref|YP_003549992.1| histone family protein DNA-binding protein [Coraliomargarita
akajimensis DSM 45221]
gi|293615667|gb|ADE55822.1| histone family protein DNA-binding protein [Coraliomargarita
akajimensis DSM 45221]
Length = 91
Score = 55.2 bits (132), Expect = 3e-06, Method: Composition-based stats.
Identities = 28/91 (30%), Positives = 43/91 (47%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNP-KLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAAR 59
M K+ L+ + K E+ V +LE + + + V++ GFG+FSV KRAAR
Sbjct: 1 MNKAELVAEVQKSLGKDTTKAAAERAVEAVLEGVKKGVKKDKNVQLIGFGTFSVTKRAAR 60
Query: 60 LARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
P + I ++ F+AG LK L
Sbjct: 61 EGINPQTGEKIKIKASKAVKFKAGAGLKAVL 91
>gi|257470163|ref|ZP_05634255.1| hypothetical protein FulcA4_12552 [Fusobacterium ulcerans ATCC
49185]
gi|317064382|ref|ZP_07928867.1| predicted protein [Fusobacterium ulcerans ATCC 49185]
gi|313690058|gb|EFS26893.1| predicted protein [Fusobacterium ulcerans ATCC 49185]
Length = 96
Score = 55.2 bits (132), Expect = 3e-06, Method: Composition-based stats.
Identities = 22/93 (23%), Positives = 46/93 (49%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M + + K+N ++++V+K +++ + + +AL +V + +G F ++ +R
Sbjct: 1 MTEGEFVRFYKKRNKSKSHKEVKKKIDLFWDVLLKALDEEKKVVFKYWGVFEEKEVKSRK 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSP 93
P+ ++ E K V FRAGK L + N
Sbjct: 61 VLVPIWKEARYTEPKKVIKFRAGKRLIKIANGD 93
>gi|253583070|ref|ZP_04860284.1| predicted protein [Fusobacterium varium ATCC 27725]
gi|251835057|gb|EES63604.1| predicted protein [Fusobacterium varium ATCC 27725]
Length = 94
Score = 55.2 bits (132), Expect = 3e-06, Method: Composition-based stats.
Identities = 23/93 (24%), Positives = 39/93 (41%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M + I KK N Q ++ V + E + L ++ +G+GSF V++ R+
Sbjct: 1 MKEIEFIREYRKKRELKNLQVAKEKVEIFWENLADILKEEEKLIFKGWGSFEVKEVKERI 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSP 93
P +K + F+ GK LK + N
Sbjct: 61 FNNPRTKKSEKIPATNKIVFKQGKILKRKFNEK 93
>gi|218261907|ref|ZP_03476580.1| hypothetical protein PRABACTJOHN_02251 [Parabacteroides johnsonii
DSM 18315]
gi|218223701|gb|EEC96351.1| hypothetical protein PRABACTJOHN_02251 [Parabacteroides johnsonii
DSM 18315]
Length = 422
Score = 55.2 bits (132), Expect = 3e-06, Method: Composition-based stats.
Identities = 16/90 (17%), Positives = 36/90 (40%), Gaps = 1/90 (1%)
Query: 4 SSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLARA 63
L G +A+ + E+ + + +++ + V+++G G+F + R +
Sbjct: 8 QDLAGLLAE-YTGKDKNSSERFLREFIAVVSEGVYTDKLVKVKGLGTFKIIPVEKRESIH 66
Query: 64 PLAQKVISVEEKMVPFFRAGKNLKERLNSP 93
+ + E F K L+E +N P
Sbjct: 67 VNTGERFVIPEHYKFSFLPDKELRELVNKP 96
>gi|257468104|ref|ZP_05632200.1| hypothetical protein FulcA4_02132 [Fusobacterium ulcerans ATCC
49185]
gi|317062389|ref|ZP_07926874.1| predicted protein [Fusobacterium ulcerans ATCC 49185]
gi|313688065|gb|EFS24900.1| predicted protein [Fusobacterium ulcerans ATCC 49185]
Length = 96
Score = 55.2 bits (132), Expect = 3e-06, Method: Composition-based stats.
Identities = 24/96 (25%), Positives = 45/96 (46%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M + I K+N ++++V + +++ + +AL +V + +G F R+R R
Sbjct: 1 MTEGEFIRFYKKRNNSKSHKEVREKIDLFWNVLLKALDEDKKVIFKNWGVFEKRERKVRK 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDST 96
P+ ++ + K V FRAGK+L E N
Sbjct: 61 ILVPMWEEAGYTKPKEVVKFRAGKSLIEIANGDTDE 96
>gi|255018442|ref|ZP_05290568.1| non-specific DNA-binding protein HU [Listeria monocytogenes FSL
F2-515]
Length = 42
Score = 55.2 bits (132), Expect = 3e-06, Method: Composition-based stats.
Identities = 18/42 (42%), Positives = 25/42 (59%)
Query: 50 SFSVRKRAARLARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
+F VR+RAAR R P ++ I + VP F+ GK LKE +
Sbjct: 1 NFEVRERAARKGRNPRTKEEIDIPASKVPAFKPGKALKEAVK 42
>gi|317064750|ref|ZP_07929235.1| predicted protein [Fusobacterium ulcerans ATCC 49185]
gi|313690426|gb|EFS27261.1| predicted protein [Fusobacterium ulcerans ATCC 49185]
Length = 92
Score = 55.2 bits (132), Expect = 3e-06, Method: Composition-based stats.
Identities = 19/88 (21%), Positives = 40/88 (45%), Gaps = 1/88 (1%)
Query: 1 MIKSSLIG-TIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAAR 59
M K L I ++ ++ + E + +A+ G+V+ G+F + R R
Sbjct: 5 MNKRELTKLYIKLSLCPISQNKAKEEIEEFFETLKEAIVIDGKVKFPKIGTFEILTRQPR 64
Query: 60 LARAPLAQKVISVEEKMVPFFRAGKNLK 87
P+ ++++++ K + FRA K +K
Sbjct: 65 KVSNPVTRELMTIYPKKIIKFRASKKIK 92
>gi|257467762|ref|ZP_05631858.1| hypothetical protein FulcA4_00412 [Fusobacterium ulcerans ATCC
49185]
gi|317062053|ref|ZP_07926538.1| predicted protein [Fusobacterium ulcerans ATCC 49185]
gi|313687729|gb|EFS24564.1| predicted protein [Fusobacterium ulcerans ATCC 49185]
Length = 103
Score = 55.2 bits (132), Expect = 3e-06, Method: Composition-based stats.
Identities = 15/92 (16%), Positives = 40/92 (43%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M + + ++ + ++ ++ ++ + + L +V I+ +G F R+ R
Sbjct: 1 MTEKEFLTLYKERRNLKSIREAKERLDSFWKALFDVLEEEEKVIIKDWGIFEKREVKPRK 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
++++ EEK V FR + +++N
Sbjct: 61 ILNLATREMMVTEEKKVIKFRPRMKMIDKVNE 92
>gi|164504804|gb|ABY59642.1| DNA-binding protein HU [Flammeovirga yaeyamensis]
Length = 79
Score = 54.8 bits (131), Expect = 4e-06, Method: Composition-based stats.
Identities = 19/72 (26%), Positives = 35/72 (48%)
Query: 24 KIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLARAPLAQKVISVEEKMVPFFRAG 83
+++ + +A G + IR FGSF +KRA++ R ++I + E +P F+
Sbjct: 1 QVLEDFFNVVKDKMAEGNNIYIRRFGSFVNKKRASKKGRDISRGEIIPIPEHFIPSFKPS 60
Query: 84 KNLKERLNSPDS 95
K E++ D
Sbjct: 61 KEFVEKIKGSDK 72
>gi|150007591|ref|YP_001302334.1| putative integration host factor IHF subunit alpha
[Parabacteroides distasonis ATCC 8503]
gi|298375537|ref|ZP_06985494.1| integration host factor IHF alpha subunit [Bacteroides sp.
3_1_19]
gi|149936015|gb|ABR42712.1| putative integration host factor IHF alpha subunit
[Parabacteroides distasonis ATCC 8503]
gi|298268037|gb|EFI09693.1| integration host factor IHF alpha subunit [Bacteroides sp.
3_1_19]
Length = 363
Score = 54.8 bits (131), Expect = 4e-06, Method: Composition-based stats.
Identities = 17/90 (18%), Positives = 42/90 (46%), Gaps = 1/90 (1%)
Query: 4 SSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLARA 63
L G ++++ K + +VE+ + + +++ + V+++G G+F + R +
Sbjct: 8 QDLAGLLSERTGK-DRGEVERFLRDFISVVSEGVYTDKIVKVKGLGTFKIISVEKRESIH 66
Query: 64 PLAQKVISVEEKMVPFFRAGKNLKERLNSP 93
+ + E F K+L+E++N P
Sbjct: 67 VNTGERFLIPEHYKFSFLPDKDLREQVNKP 96
>gi|255013880|ref|ZP_05286006.1| putative integration host factor IHF alpha subunit [Bacteroides
sp. 2_1_7]
Length = 363
Score = 54.8 bits (131), Expect = 4e-06, Method: Composition-based stats.
Identities = 17/90 (18%), Positives = 42/90 (46%), Gaps = 1/90 (1%)
Query: 4 SSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLARA 63
L G ++++ K + +VE+ + + +++ + V+++G G+F + R +
Sbjct: 8 QDLAGLLSERTGK-DRGEVERFLRDFISVVSEGVYTDKIVKVKGLGTFKIISVEKRESIH 66
Query: 64 PLAQKVISVEEKMVPFFRAGKNLKERLNSP 93
+ + E F K+L+E++N P
Sbjct: 67 VNTGERFLIPEHYKFSFLPDKDLREQVNKP 96
>gi|302336640|ref|YP_003801846.1| histone family protein DNA-binding protein [Spirochaeta smaragdinae
DSM 11293]
gi|301633825|gb|ADK79252.1| histone family protein DNA-binding protein [Spirochaeta smaragdinae
DSM 11293]
Length = 292
Score = 54.8 bits (131), Expect = 4e-06, Method: Composition-based stats.
Identities = 23/94 (24%), Positives = 35/94 (37%), Gaps = 7/94 (7%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K + IA +N L V +I++ + + G RV + G R R A
Sbjct: 188 TKDRMAAYIAGRN-DLTQLQVRRILDDFFSVVESGIMLGERVSLGSLGKIGYRVRPPSKA 246
Query: 62 RA---PLAQKVISVEEK---MVPFFRAGKNLKER 89
R P + +++ K V F LKER
Sbjct: 247 RIITVPATGEEMTIPAKPSRAVVKFSPSGRLKER 280
>gi|83816472|ref|YP_445195.1| DNA-binding protein HU [Salinibacter ruber DSM 13855]
gi|294507079|ref|YP_003571137.1| DNA-binding protein HU [Salinibacter ruber M8]
gi|83757866|gb|ABC45979.1| probable DNA-binding protein HU [Salinibacter ruber DSM 13855]
gi|294343407|emb|CBH24185.1| DNA-binding protein HU [Salinibacter ruber M8]
Length = 126
Score = 54.8 bits (131), Expect = 4e-06, Method: Composition-based stats.
Identities = 24/76 (31%), Positives = 39/76 (51%), Gaps = 2/76 (2%)
Query: 19 YQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAAR-LARAPLAQKVISVEEKMV 77
+ V ++ L + M +A R+E+R FG F V+K A+ AR P + + V +
Sbjct: 29 KEQVRSVLTALGDLMIEA-DPERRIELRNFGVFEVKKTKAKPTARNPKTNEPMFVPSRRK 87
Query: 78 PFFRAGKNLKERLNSP 93
FR GK ++E L +P
Sbjct: 88 TLFRPGKRVEEVLKTP 103
>gi|257469787|ref|ZP_05633879.1| hypothetical protein FulcA4_10627 [Fusobacterium ulcerans ATCC
49185]
gi|317064017|ref|ZP_07928502.1| predicted protein [Fusobacterium ulcerans ATCC 49185]
gi|313689693|gb|EFS26528.1| predicted protein [Fusobacterium ulcerans ATCC 49185]
Length = 88
Score = 54.8 bits (131), Expect = 4e-06, Method: Composition-based stats.
Identities = 22/88 (25%), Positives = 41/88 (46%), Gaps = 1/88 (1%)
Query: 1 MIKSSLIGTIAK-KNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAAR 59
M K K + + + + +++ LE + +AL G V+ G+F V R R
Sbjct: 1 MNKREFAKIYRKISSDDVTIEAALRDIDIFLETLREALQIEGEVKFVKRGTFEVISRKPR 60
Query: 60 LARAPLAQKVISVEEKMVPFFRAGKNLK 87
+ P+ ++ ++V K + FRA K +K
Sbjct: 61 VISNPVTRERMTVYPKKIVRFRASKKIK 88
>gi|317062728|ref|ZP_07927213.1| predicted protein [Fusobacterium ulcerans ATCC 49185]
gi|313688404|gb|EFS25239.1| predicted protein [Fusobacterium ulcerans ATCC 49185]
Length = 106
Score = 54.8 bits (131), Expect = 4e-06, Method: Composition-based stats.
Identities = 18/96 (18%), Positives = 37/96 (38%), Gaps = 4/96 (4%)
Query: 1 MIKSSLIGTIAK--KNPKLNYQ--DVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKR 56
M + + + K + +K V + + + Q + +V + +G F + R
Sbjct: 10 MTEKEFMKKYLESFKLDGRLKNIGEAKKRVKVFFDTLKQVIDKDEKVIFKDWGKFEIEHR 69
Query: 57 AARLARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P ++ I + K V F GK +R+ +
Sbjct: 70 EQRTYGNPRTKERIIIPAKKVLKFTVGKKFADRVKN 105
>gi|253583306|ref|ZP_04860504.1| predicted protein [Fusobacterium varium ATCC 27725]
gi|251833878|gb|EES62441.1| predicted protein [Fusobacterium varium ATCC 27725]
Length = 116
Score = 54.4 bits (130), Expect = 5e-06, Method: Composition-based stats.
Identities = 21/95 (22%), Positives = 43/95 (45%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M + I +N N ++ ++ +++ + +ALA G+V ++ +G F ++ + R
Sbjct: 20 MKEGEFIRFYRDRNCLRNIKEAKEKIDLFWTVVLKALAEDGKVSLKDWGVFEKKEVSPRK 79
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDS 95
P +K + FR G LK +N D+
Sbjct: 80 IMTPRMEKERVTKAGEKIKFRTGTGLKTLVNGDDA 114
>gi|253583860|ref|ZP_04861058.1| predicted protein [Fusobacterium varium ATCC 27725]
gi|251834432|gb|EES62995.1| predicted protein [Fusobacterium varium ATCC 27725]
Length = 89
Score = 54.4 bits (130), Expect = 5e-06, Method: Composition-based stats.
Identities = 18/87 (20%), Positives = 38/87 (43%), Gaps = 1/87 (1%)
Query: 1 MIKSSLIGTIAK-KNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAAR 59
M K L + ++ ++ K + + ++ + +AL V G F V KR +
Sbjct: 1 MNKRELAKIYSTISQEEVLRREALKEIEIFIQTLQEALQKYNSVTFVNRGVFEVAKRKPK 60
Query: 60 LARAPLAQKVISVEEKMVPFFRAGKNL 86
+ P ++++ + + FRA KN+
Sbjct: 61 VVSNPSTRELMKIYPRKTVKFRASKNI 87
>gi|160937268|ref|ZP_02084630.1| hypothetical protein CLOBOL_02158 [Clostridium bolteae ATCC
BAA-613]
gi|158439832|gb|EDP17581.1| hypothetical protein CLOBOL_02158 [Clostridium bolteae ATCC
BAA-613]
Length = 51
Score = 54.4 bits (130), Expect = 5e-06, Method: Composition-based stats.
Identities = 16/42 (38%), Positives = 25/42 (59%)
Query: 49 GSFSVRKRAARLARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
G+F+V +R R R P +V+ ++ + VP FRAG LK +
Sbjct: 4 GTFAVAERKGRQRRNPRTGEVVEIKPRRVPVFRAGSILKREV 45
>gi|325973341|ref|YP_004250405.1| DNA-binding protein [Mycoplasma suis str. Illinois]
gi|323651943|gb|ADX98025.1| DNA-binding protein [Mycoplasma suis str. Illinois]
Length = 99
Score = 54.4 bits (130), Expect = 5e-06, Method: Composition-based stats.
Identities = 16/89 (17%), Positives = 32/89 (35%), Gaps = 1/89 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K L+ I+ + L ++ ++ + G V + G + +R R
Sbjct: 1 MTKLELLVKISGET-GLTKDQIDSVLKAYQAITIAEMKEQGEVNVLEIGKIKISRRPERK 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKER 89
+ ++ + + V F K LKE
Sbjct: 60 GVNFMTKEPMVIPAANVAKFSFSKKLKEA 88
>gi|134034140|sp|Q1RK52|HLP_RICBR RecName: Full=Histone-like DNA-binding protein
Length = 94
Score = 54.4 bits (130), Expect = 5e-06, Method: Composition-based stats.
Identities = 19/91 (20%), Positives = 38/91 (41%), Gaps = 1/91 (1%)
Query: 4 SSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLARA 63
I + + E++VN + + +A ++ ++ FGSF V+ + +R
Sbjct: 5 KEKIAFMLNAELGFSKSLCEEVVNAVFTNILD-IAKEQKLILKNFGSFEVKHKNSRPGIN 63
Query: 64 PLAQKVISVEEKMVPFFRAGKNLKERLNSPD 94
+ I++E K + F LK +N D
Sbjct: 64 FHTKSQITIEPKNILRFVPSAKLKALINEND 94
>gi|148255421|ref|YP_001240006.1| DNA-binding protein HU [Bradyrhizobium sp. BTAi1]
gi|146407594|gb|ABQ36100.1| DNA-binding protein HU [Bradyrhizobium sp. BTAi1]
Length = 100
Score = 54.4 bits (130), Expect = 5e-06, Method: Composition-based stats.
Identities = 23/94 (24%), Positives = 39/94 (41%), Gaps = 7/94 (7%)
Query: 3 KSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKR---AAR 59
KS LI IA +L+ +DV+ ++ L + + L G + GF F V K+ AR
Sbjct: 7 KSQLIEKIAT-TTELSKRDVKNVMETLTDVGHKELKKNGVFLVPGFAKFVVVKKPAVKAR 65
Query: 60 LARAPLAQKVIS---VEEKMVPFFRAGKNLKERL 90
P + + + + R K K+ +
Sbjct: 66 KGTNPFTGEEMMFKAKPARKIVRARPVKAAKDAV 99
>gi|257470543|ref|ZP_05634633.1| hypothetical protein FulcA4_14451 [Fusobacterium ulcerans ATCC
49185]
Length = 88
Score = 54.4 bits (130), Expect = 5e-06, Method: Composition-based stats.
Identities = 19/88 (21%), Positives = 40/88 (45%), Gaps = 1/88 (1%)
Query: 1 MIKSSLIG-TIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAAR 59
M K L I ++ ++ + E + +A+ G+V+ G+F + R R
Sbjct: 1 MNKRELTKLYIKLSLCPISQNKAKEEIEEFFETLKEAIVIDGKVKFPKIGTFEILTRQPR 60
Query: 60 LARAPLAQKVISVEEKMVPFFRAGKNLK 87
P+ ++++++ K + FRA K +K
Sbjct: 61 KVSNPVTRELMTIYPKKIIKFRASKKIK 88
>gi|257468326|ref|ZP_05632422.1| hypothetical protein FulcA4_03244 [Fusobacterium ulcerans ATCC
49185]
gi|317062603|ref|ZP_07927088.1| ABC transporter [Fusobacterium ulcerans ATCC 49185]
gi|313688279|gb|EFS25114.1| ABC transporter [Fusobacterium ulcerans ATCC 49185]
Length = 103
Score = 54.4 bits (130), Expect = 5e-06, Method: Composition-based stats.
Identities = 14/92 (15%), Positives = 41/92 (44%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M + + ++ + ++ ++ ++ + + LA +V I+ +G F ++ R
Sbjct: 1 MTEKEFLTLYKERRNLKSIREAKERLDSFWKALFDVLAEEEKVIIKDWGIFEKKEVKPRK 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
++++ EEK V F+ + +++N
Sbjct: 61 ILNLATREMMITEEKKVIKFKPRMKMIDKVNE 92
>gi|256839778|ref|ZP_05545287.1| conserved hypothetical protein [Parabacteroides sp. D13]
gi|256738708|gb|EEU52033.1| conserved hypothetical protein [Parabacteroides sp. D13]
Length = 365
Score = 54.4 bits (130), Expect = 5e-06, Method: Composition-based stats.
Identities = 17/90 (18%), Positives = 42/90 (46%), Gaps = 1/90 (1%)
Query: 4 SSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLARA 63
L G ++++ K + +VE+ + + +++ + V+++G G+F + R +
Sbjct: 10 QDLAGLLSERTGK-DRGEVERFLRDFISVVSEGVYTDKIVKVKGLGTFKIISVEKRESIH 68
Query: 64 PLAQKVISVEEKMVPFFRAGKNLKERLNSP 93
+ + E F K+L+E++N P
Sbjct: 69 VNTGERFLIPEHYKFSFLPDKDLREQVNKP 98
>gi|15893011|ref|NP_360725.1| integration host factor alpha-subunit [Rickettsia conorii str.
Malish 7]
gi|34581296|ref|ZP_00142776.1| integration host factor alpha-subunit [Rickettsia sibirica 246]
gi|229587067|ref|YP_002845568.1| Integration host factor alpha-subunit [Rickettsia africae ESF-5]
gi|81527945|sp|Q92GN5|HLP_RICCN RecName: Full=Histone-like DNA-binding protein
gi|15620211|gb|AAL03626.1| integration host factor alpha-subunit [Rickettsia conorii str.
Malish 7]
gi|28262681|gb|EAA26185.1| integration host factor alpha-subunit [Rickettsia sibirica 246]
gi|228022117|gb|ACP53825.1| Integration host factor alpha-subunit [Rickettsia africae ESF-5]
Length = 95
Score = 54.4 bits (130), Expect = 5e-06, Method: Composition-based stats.
Identities = 18/92 (19%), Positives = 41/92 (44%), Gaps = 2/92 (2%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
+ K+ + ++ K + E+IV+ + + + +A ++ ++ FGSF V+++ R
Sbjct: 3 ITKAKIAAMLSSKL-GFSNNLCEEIVHTVFSNILE-IAKEQKLTLKNFGSFEVKQKNPRP 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
+ + +E K F LK +N
Sbjct: 61 GINFHTKAPVIIESKKHLRFVPSSKLKALINE 92
>gi|39938549|ref|NP_950315.1| nucleoid DNA-binding protein [Onion yellows phytoplasma OY-M]
gi|39721658|dbj|BAD04148.1| bacterial nucleoid DNA-binding protein [Onion yellows phytoplasma
OY-M]
Length = 96
Score = 54.4 bits (130), Expect = 6e-06, Method: Composition-based stats.
Identities = 23/90 (25%), Positives = 42/90 (46%), Gaps = 2/90 (2%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALA-NGGRVEIRGFGSFSVRKRAAR 59
M K LI A+ N K + E+ ++ + +A+ N V G F ++ R A
Sbjct: 1 MTKKELIKKTAEVN-KTSISKTEEFYHIFENTLIKAITTNEEVVLSPQIGKFQLKPRKAY 59
Query: 60 LARAPLAQKVISVEEKMVPFFRAGKNLKER 89
+ R P +K + + K V F+ K++K++
Sbjct: 60 IGRNPKTKKKLKIPAKTVVAFKLSKSIKDK 89
>gi|229892033|sp|P0C9E4|VHLP_ASFWA RecName: Full=Viral histone-like protein A104R
Length = 104
Score = 54.4 bits (130), Expect = 6e-06, Method: Composition-based stats.
Identities = 23/97 (23%), Positives = 38/97 (39%), Gaps = 7/97 (7%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRG---FGSFSVRKRA 57
+ K L +A +LN +E+I + + AL + V I F +V+ +
Sbjct: 9 ITKQELYSLVAADT-QLNKALIERIFTSQQKIIQNALKHNQEVIIPPGIKFTVVTVKAKP 67
Query: 58 ARLARAPLAQKVISV---EEKMVPFFRAGKNLKERLN 91
AR P + I + E RA K + + LN
Sbjct: 68 ARQGHNPATGEPIQIKAKPEHKAVKIRALKPVHDMLN 104
>gi|9628142|ref|NP_042728.1| histone-like protein [African swine fever virus]
gi|56405050|sp|P68742|VHLP_ASFB7 RecName: Full=Viral histone-like protein
gi|56405051|sp|P68743|VHLP_ASFM2 RecName: Full=Viral histone-like protein
gi|229892031|sp|P0C9E5|VHLP_ASFK5 RecName: Full=Viral histone-like protein A104R
gi|229892032|sp|P0C9E3|VHLP_ASFP4 RecName: Full=Viral histone-like protein A104R
gi|289177|gb|AAA42689.1| histone-like DNA binding protein [African swine fever virus]
gi|780404|gb|AAA65264.1| histone-like protein [African swine fever virus]
gi|162849245|emb|CAN10133.1| Histone-like protein [African swine fever virus Benin 97/1]
gi|162849417|emb|CAN10382.1| Histone-like protein [African swine fever virus OURT 88/3]
gi|291289478|emb|CBH29135.1| BA71V-A104R [African swine fever virus E75]
gi|303398719|emb|CBW46700.1| A104R [African swine fever virus Georgia 2007/1]
gi|1097423|prf||2113434AG histone-like protein
Length = 104
Score = 54.4 bits (130), Expect = 6e-06, Method: Composition-based stats.
Identities = 23/97 (23%), Positives = 38/97 (39%), Gaps = 7/97 (7%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRG---FGSFSVRKRA 57
+ K L +A +LN +E+I + + AL + V I F +V+ +
Sbjct: 9 ITKQELYSLVAADT-QLNKALIERIFTSQQKIIQNALKHNQEVIIPPGIKFTVVTVKAKP 67
Query: 58 ARLARAPLAQKVISV---EEKMVPFFRAGKNLKERLN 91
AR P + I + E RA K + + LN
Sbjct: 68 ARQGHNPATGEPIQIKAKPEHKAVKIRALKPVHDMLN 104
>gi|153208886|ref|ZP_01947108.1| DNA-binding protein BpH2 [Coxiella burnetii 'MSU Goat Q177']
gi|165920600|ref|ZP_02219571.1| DNA-binding protein BpH2 [Coxiella burnetii RSA 334]
gi|212218921|ref|YP_002305708.1| DNA-binding protein [Coxiella burnetii CbuK_Q154]
gi|120575675|gb|EAX32299.1| DNA-binding protein BpH2 [Coxiella burnetii 'MSU Goat Q177']
gi|165916802|gb|EDR35406.1| DNA-binding protein BpH2 [Coxiella burnetii RSA 334]
gi|212013183|gb|ACJ20563.1| bacterial DNA-binding protein [Coxiella burnetii CbuK_Q154]
Length = 129
Score = 54.4 bits (130), Expect = 6e-06, Method: Composition-based stats.
Identities = 22/98 (22%), Positives = 35/98 (35%), Gaps = 9/98 (9%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKR---- 56
M KS ++ +A+ +L + V I L + L GG E G +
Sbjct: 32 MTKSQILAHLAEST-ELTKKQVTMIFEALSDLTHAHLKKGGAGEFVVPGLCKCSVKRKPA 90
Query: 57 -AARLARAPLAQKVIS---VEEKMVPFFRAGKNLKERL 90
AR P + ++ + V R K LKE +
Sbjct: 91 TKARKGINPFTGESMTFKAKPARNVVKIRPLKRLKEMV 128
>gi|257468465|ref|ZP_05632559.1| histone family protein DNA-binding protein [Fusobacterium
ulcerans ATCC 49185]
Length = 97
Score = 54.0 bits (129), Expect = 6e-06, Method: Composition-based stats.
Identities = 18/96 (18%), Positives = 37/96 (38%), Gaps = 4/96 (4%)
Query: 1 MIKSSLIGTIAK--KNPKLNYQ--DVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKR 56
M + + + K + +K V + + + Q + +V + +G F + R
Sbjct: 1 MTEKEFMKKYLESFKLDGRLKNIGEAKKRVKVFFDTLKQVIDKDEKVIFKDWGKFEIEHR 60
Query: 57 AARLARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P ++ I + K V F GK +R+ +
Sbjct: 61 EQRTYGNPRTKERIIIPAKKVLKFTVGKKFADRVKN 96
>gi|257469296|ref|ZP_05633390.1| hypothetical protein FulcA4_08142 [Fusobacterium ulcerans ATCC
49185]
gi|317063544|ref|ZP_07928029.1| predicted protein [Fusobacterium ulcerans ATCC 49185]
gi|313689220|gb|EFS26055.1| predicted protein [Fusobacterium ulcerans ATCC 49185]
Length = 103
Score = 54.0 bits (129), Expect = 6e-06, Method: Composition-based stats.
Identities = 13/92 (14%), Positives = 40/92 (43%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M + + ++ + ++ ++ ++ + + L +V I+ +G F ++ R
Sbjct: 1 MTEKEFLTLYKERRNLKSIREAKERLDSFWKALFDVLEEEEKVIIKDWGIFEKKEVKPRK 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
++++ EEK V F+ + +++N
Sbjct: 61 ILNLATREMMITEEKKVIKFKPRMKMIDKVNE 92
>gi|253581429|ref|ZP_04858654.1| predicted protein [Fusobacterium varium ATCC 27725]
gi|251836499|gb|EES65034.1| predicted protein [Fusobacterium varium ATCC 27725]
Length = 97
Score = 54.0 bits (129), Expect = 6e-06, Method: Composition-based stats.
Identities = 16/72 (22%), Positives = 33/72 (45%)
Query: 21 DVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLARAPLAQKVISVEEKMVPFF 80
+ +K V + + + Q + +V + +G F + R R+ P ++ I + K V F
Sbjct: 25 EAKKRVKVFFDTLKQVIDENEKVIFKDWGKFEIEHREQRIYGNPKTKERIVIPAKRVLKF 84
Query: 81 RAGKNLKERLNS 92
GK +R+ +
Sbjct: 85 TVGKKFADRVKN 96
>gi|49146394|ref|YP_025502.1| putative integration host factor alpha subunit [Caedibacter
taeniospiralis]
gi|40458362|gb|AAR87110.1| putative integration host factor alpha subunit [Caedibacter
taeniospiralis]
Length = 183
Score = 54.0 bits (129), Expect = 7e-06, Method: Composition-based stats.
Identities = 21/90 (23%), Positives = 36/90 (40%), Gaps = 1/90 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M ++ LI ++ K K + +D L+ + + L N + + G G F R +
Sbjct: 33 MSRNELIKHLSLKT-KFSREDCNHFFYELMNLLREQLLNNRIILLEGLGRFETRVSFRKN 91
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
A P + I EK V F+ K +
Sbjct: 92 AHNPRTMEKIKPREKRVVLFKFANEFKALI 121
>gi|262381910|ref|ZP_06075048.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
gi|262297087|gb|EEY85017.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
Length = 363
Score = 54.0 bits (129), Expect = 7e-06, Method: Composition-based stats.
Identities = 17/90 (18%), Positives = 42/90 (46%), Gaps = 1/90 (1%)
Query: 4 SSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLARA 63
L G ++++ K + +VE+ + + +++ + V+++G G+F + R +
Sbjct: 8 QDLAGLLSERTGK-DRGEVERFLRDFISVVSEGVYTDKIVKVKGLGTFKIISVEKRESIH 66
Query: 64 PLAQKVISVEEKMVPFFRAGKNLKERLNSP 93
+ + E F K+L+E++N P
Sbjct: 67 VNTGERFLIPEHYKFSFLPDKDLREQVNKP 96
>gi|220936085|ref|YP_002514984.1| histone family protein DNA-binding protein [Thioalkalivibrio sp.
HL-EbGR7]
gi|219997395|gb|ACL73997.1| histone family protein DNA-binding protein [Thioalkalivibrio sp.
HL-EbGR7]
Length = 118
Score = 54.0 bits (129), Expect = 7e-06, Method: Composition-based stats.
Identities = 18/96 (18%), Positives = 38/96 (39%), Gaps = 9/96 (9%)
Query: 3 KSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRK-----RA 57
K+ ++ IA + L+ +DV +++ L + +++ G G ++
Sbjct: 24 KTEILNHIATQT-GLSKKDVGAVMDSLQGLIEKSVKPRGVGMFTLPGLLKIKVVKKPATK 82
Query: 58 ARLARAPLAQKVIS---VEEKMVPFFRAGKNLKERL 90
AR R P + + + V KNLK+ +
Sbjct: 83 ARKGRNPATGEEMIFKAKPARKVVKVLPLKNLKDMI 118
>gi|39938529|ref|NP_950295.1| nucleoid DNA-binding protein [Onion yellows phytoplasma OY-M]
gi|39938880|ref|NP_950646.1| nucleoid DNA-binding protein [Onion yellows phytoplasma OY-M]
gi|39721638|dbj|BAD04128.1| bacterial nucleoid DNA-binding protein [Onion yellows phytoplasma
OY-M]
gi|39721989|dbj|BAD04479.1| bacterial nucleoid DNA-binding protein [Onion yellows phytoplasma
OY-M]
Length = 96
Score = 54.0 bits (129), Expect = 7e-06, Method: Composition-based stats.
Identities = 24/89 (26%), Positives = 40/89 (44%), Gaps = 2/89 (2%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIR-GFGSFSVRKRAAR 59
M K LI IA+ N K + E+ N + +A+ + V + G F ++ R A
Sbjct: 1 MTKKELIKKIAEVN-KTSISKTEEFYNSFENTLIKAIISNEEVSLSSKIGKFKLKSRKAY 59
Query: 60 LARAPLAQKVISVEEKMVPFFRAGKNLKE 88
R P +K + + K V F+ K +K+
Sbjct: 60 TGRNPKTRKKLKIPAKTVVTFKLSKTIKD 88
>gi|317064237|ref|ZP_07928722.1| predicted protein [Fusobacterium ulcerans ATCC 49185]
gi|313689913|gb|EFS26748.1| predicted protein [Fusobacterium ulcerans ATCC 49185]
Length = 91
Score = 54.0 bits (129), Expect = 8e-06, Method: Composition-based stats.
Identities = 25/88 (28%), Positives = 42/88 (47%), Gaps = 1/88 (1%)
Query: 1 MIKSSLIGTIAK-KNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAAR 59
M K T K + + + V V++ LE + +AL G+V+ G+F V R R
Sbjct: 4 MNKREFAKTYRKISSEDMTIETVLTDVDIFLETLREALQIEGKVKFVKRGTFEVISRKPR 63
Query: 60 LARAPLAQKVISVEEKMVPFFRAGKNLK 87
+ P ++ ++V K + FRA K +K
Sbjct: 64 VISNPATRERMTVYPKKIVKFRASKKIK 91
>gi|253583722|ref|ZP_04860920.1| predicted protein [Fusobacterium varium ATCC 27725]
gi|251834294|gb|EES62857.1| predicted protein [Fusobacterium varium ATCC 27725]
Length = 103
Score = 54.0 bits (129), Expect = 8e-06, Method: Composition-based stats.
Identities = 13/99 (13%), Positives = 43/99 (43%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M + + ++ + ++ ++ ++ + + L +V I+ +G F ++ R
Sbjct: 1 MTEKEFLILYKERRNLKSIREAKERLDSFWKALFDVLEEEEKVIIKDWGIFEKKEVKPRK 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDSTLSN 99
++++ EEK V F+ + +++N ++ +
Sbjct: 61 ILNLATREMMITEEKKVIKFKPRMKMIDKVNELNTLIEE 99
>gi|253582858|ref|ZP_04860077.1| predicted protein [Fusobacterium varium ATCC 27725]
gi|251835292|gb|EES63834.1| predicted protein [Fusobacterium varium ATCC 27725]
Length = 101
Score = 54.0 bits (129), Expect = 8e-06, Method: Composition-based stats.
Identities = 21/95 (22%), Positives = 43/95 (45%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M + I +N + ++ +K +++ + +AL G+V ++ +G F ++ A R
Sbjct: 5 MKEGEFIRFYRDRNCLRSIKEAKKKIDLFWTVVLKALDEDGKVLLKDWGVFEKKEVAPRK 64
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDS 95
P +K ++ FR G LK +N D+
Sbjct: 65 IMTPRMEKERVIKAGEKIIFRTGTGLKTLVNGADA 99
>gi|167948154|ref|ZP_02535228.1| integration host factor, alpha subunit [Endoriftia persephone
'Hot96_1+Hot96_2']
Length = 104
Score = 53.6 bits (128), Expect = 8e-06, Method: Composition-based stats.
Identities = 24/92 (26%), Positives = 45/92 (48%), Gaps = 5/92 (5%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSV---RKRAA 58
K+ + + + LN ++ +++V M EE+ +AL G +V++ GFG+F +K+
Sbjct: 4 TKADMAERLFDEL-GLNKREAKEMVEMFFEEIRRALEEGSQVKLSGFGNFDPGVEKKQRP 62
Query: 59 RLARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R +K + FR G+ LK R+
Sbjct: 63 RSYTQ-KPEKRSRSPPAELVTFRPGQTLKARV 93
>gi|301310443|ref|ZP_07216382.1| DNA-binding protein HU [Bacteroides sp. 20_3]
gi|300832017|gb|EFK62648.1| DNA-binding protein HU [Bacteroides sp. 20_3]
Length = 359
Score = 53.6 bits (128), Expect = 8e-06, Method: Composition-based stats.
Identities = 17/90 (18%), Positives = 42/90 (46%), Gaps = 1/90 (1%)
Query: 4 SSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLARA 63
L G ++++ K + +VE+ + + +++ + V+++G G+F + R +
Sbjct: 8 QDLAGLLSERTGK-DRGEVERFLRDFISVVSEGVYTDKIVKVKGLGTFKIISVEKRESIH 66
Query: 64 PLAQKVISVEEKMVPFFRAGKNLKERLNSP 93
+ + E F K+L+E++N P
Sbjct: 67 VNTGERFLIPEHYKFSFLPDKDLREQVNKP 96
>gi|39938999|ref|NP_950765.1| nucleoid DNA-binding protein [Onion yellows phytoplasma OY-M]
gi|39722108|dbj|BAD04598.1| bacterial nucleoid DNA-binding protein [Onion yellows phytoplasma
OY-M]
Length = 96
Score = 53.6 bits (128), Expect = 8e-06, Method: Composition-based stats.
Identities = 24/89 (26%), Positives = 41/89 (46%), Gaps = 2/89 (2%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIR-GFGSFSVRKRAAR 59
M K LI IA+ N K + E+ N + +A+ + V + G F ++ R A
Sbjct: 1 MNKKELIKKIAEVN-KTSISKTEEFYNSFENTLIKAIISNEEVSLSSKIGKFKLKPRKAY 59
Query: 60 LARAPLAQKVISVEEKMVPFFRAGKNLKE 88
+ R P +K + + K V F+ K +K+
Sbjct: 60 IGRNPKTKKKLKIPAKTVVTFKLSKTIKD 88
>gi|307718393|ref|YP_003873925.1| hypothetical protein STHERM_c06940 [Spirochaeta thermophila DSM
6192]
gi|306532118|gb|ADN01652.1| hypothetical protein STHERM_c06940 [Spirochaeta thermophila DSM
6192]
Length = 291
Score = 53.6 bits (128), Expect = 8e-06, Method: Composition-based stats.
Identities = 23/89 (25%), Positives = 39/89 (43%), Gaps = 6/89 (6%)
Query: 7 IGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLAR---A 63
I + + L + V++++ L + + G RV + GSFS+ R R AR
Sbjct: 188 ITSYLSRRHDLPRKVVKELLADYLTLVEAGVLMGERVRLGTLGSFSLTVRPPRKARVMRH 247
Query: 64 PLAQKVISVEEK---MVPFFRAGKNLKER 89
P I V + VP F+ ++ KE+
Sbjct: 248 PATGGEILVPARPALAVPRFKPSRSFKEK 276
>gi|257470623|ref|ZP_05634713.1| histone family protein DNA-binding protein [Fusobacterium
ulcerans ATCC 49185]
gi|317064829|ref|ZP_07929314.1| predicted protein [Fusobacterium ulcerans ATCC 49185]
gi|313690505|gb|EFS27340.1| predicted protein [Fusobacterium ulcerans ATCC 49185]
Length = 101
Score = 53.6 bits (128), Expect = 8e-06, Method: Composition-based stats.
Identities = 16/93 (17%), Positives = 44/93 (47%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M + + K+ N ++ ++ VN+ + + ++L G +V+ + +G+F ++ R
Sbjct: 1 MGEKEFLKLYMKERGLKNLEEAKEKVNIFWKTVKESLEKGEKVKFKDWGNFEMKDVRPRR 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSP 93
++ +++ F +GK L + +N+
Sbjct: 61 IIELKTKRDMTIPGSRKMKFSSGKGLIKSINNK 93
>gi|253581507|ref|ZP_04858732.1| methionine import ATP-binding protein metN [Fusobacterium varium
ATCC 27725]
gi|251836577|gb|EES65112.1| methionine import ATP-binding protein metN [Fusobacterium varium
ATCC 27725]
Length = 103
Score = 53.6 bits (128), Expect = 9e-06, Method: Composition-based stats.
Identities = 14/99 (14%), Positives = 43/99 (43%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M + + ++ + ++ ++ ++ + + L +V I+ +G F ++ R
Sbjct: 1 MTEKEFLTLYKERRNLKSIREAKERLDSFWKALFDVLEEEDKVIIKDWGIFEKKEVKPRK 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDSTLSN 99
+K++ EEK V F+ + +++N ++ +
Sbjct: 61 ILNLATRKMMMTEEKKVIKFKPRMKMIDKVNELNTLIEE 99
>gi|238650372|ref|YP_002916224.1| integration host factor alpha-subunit [Rickettsia peacockii str.
Rustic]
gi|238624470|gb|ACR47176.1| integration host factor alpha-subunit [Rickettsia peacockii str.
Rustic]
Length = 95
Score = 53.6 bits (128), Expect = 9e-06, Method: Composition-based stats.
Identities = 18/92 (19%), Positives = 40/92 (43%), Gaps = 2/92 (2%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
+ K+ + ++ K + E IV+ + + + +A ++ ++ FGSF V+++ R
Sbjct: 3 ITKAKIAAMLSSKL-GFSNNLCEAIVHTVFSNILE-IAKAQKLTLKNFGSFEVKQKNPRP 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
+ + +E K F LK +N
Sbjct: 61 GINFHTKAPVIIESKKHLRFVPSSKLKALINE 92
>gi|257470012|ref|ZP_05634104.1| hypothetical protein FulcA4_11773 [Fusobacterium ulcerans ATCC
49185]
Length = 88
Score = 53.6 bits (128), Expect = 1e-05, Method: Composition-based stats.
Identities = 25/88 (28%), Positives = 42/88 (47%), Gaps = 1/88 (1%)
Query: 1 MIKSSLIGTIAK-KNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAAR 59
M K T K + + + V V++ LE + +AL G+V+ G+F V R R
Sbjct: 1 MNKREFAKTYRKISSEDMTIETVLTDVDIFLETLREALQIEGKVKFVKRGTFEVISRKPR 60
Query: 60 LARAPLAQKVISVEEKMVPFFRAGKNLK 87
+ P ++ ++V K + FRA K +K
Sbjct: 61 VISNPATRERMTVYPKKIVKFRASKKIK 88
>gi|257469786|ref|ZP_05633878.1| hypothetical protein FulcA4_10622 [Fusobacterium ulcerans ATCC
49185]
gi|317064016|ref|ZP_07928501.1| predicted protein [Fusobacterium ulcerans ATCC 49185]
gi|313689692|gb|EFS26527.1| predicted protein [Fusobacterium ulcerans ATCC 49185]
Length = 96
Score = 53.6 bits (128), Expect = 1e-05, Method: Composition-based stats.
Identities = 21/88 (23%), Positives = 46/88 (52%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M + I K+N ++++V++ +++ + + +AL +V + +G F R+ +R
Sbjct: 1 MTEGEFIRFYKKRNRIKSHKEVKEKIDLFWDVLLKALEEDKKVVFKDWGVFEKREIKSRK 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKE 88
+ P+ ++ + K V FRAGK L +
Sbjct: 61 IKVPMWEEERYTKPKEVIKFRAGKGLIK 88
>gi|315185584|gb|EFU19353.1| histone family protein DNA-binding protein [Spirochaeta thermophila
DSM 6578]
Length = 291
Score = 53.2 bits (127), Expect = 1e-05, Method: Composition-based stats.
Identities = 23/89 (25%), Positives = 39/89 (43%), Gaps = 6/89 (6%)
Query: 7 IGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLAR---A 63
I + + L + V++++ L + + G RV + GSFS+ R R AR
Sbjct: 188 ITSYLSRRHGLPQKAVKELLADYLTLVEAGVLMGERVRLGNLGSFSLTVRPPRKARVMRH 247
Query: 64 PLAQKVISVEEK---MVPFFRAGKNLKER 89
P I V + VP F+ ++ KE+
Sbjct: 248 PATGGEILVPAQPAIAVPRFKPSRSFKEK 276
>gi|257468389|ref|ZP_05632483.1| hypothetical protein FulcA4_03549 [Fusobacterium ulcerans ATCC
49185]
gi|317062662|ref|ZP_07927147.1| predicted protein [Fusobacterium ulcerans ATCC 49185]
gi|313688338|gb|EFS25173.1| predicted protein [Fusobacterium ulcerans ATCC 49185]
Length = 88
Score = 53.2 bits (127), Expect = 1e-05, Method: Composition-based stats.
Identities = 21/88 (23%), Positives = 40/88 (45%), Gaps = 1/88 (1%)
Query: 1 MIKSSLIGTIAKKNPK-LNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAAR 59
M K + K + ++ + ++ + LE + +A+A G V G+F + R R
Sbjct: 1 MNKKEMAKLYQKMTSEKISIMEAKEEIEEFLETVKEAIALDGEVRFPKRGAFEILTRQPR 60
Query: 60 LARAPLAQKVISVEEKMVPFFRAGKNLK 87
L P+ ++ + + K FRA K +K
Sbjct: 61 LVANPITKEQMKIYPKKTVRFRASKKMK 88
>gi|253584285|ref|ZP_04861483.1| predicted protein [Fusobacterium varium ATCC 27725]
gi|251834857|gb|EES63420.1| predicted protein [Fusobacterium varium ATCC 27725]
Length = 96
Score = 53.2 bits (127), Expect = 1e-05, Method: Composition-based stats.
Identities = 27/95 (28%), Positives = 50/95 (52%), Gaps = 1/95 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M +S I K+N NY++ ++ +++ + +AL V ++ +G+F ++ AR
Sbjct: 1 MKESMFIKYYKKRNKSKNYKEAKEKIDLFWNVLLKALEE-ESVILKNWGTFEKKEVKARK 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDS 95
P +K I+ + K V FRAGK L+ +N D+
Sbjct: 60 VIIPNTEKAITTKAKKVIKFRAGKGLRNIVNGVDA 94
>gi|88798564|ref|ZP_01114148.1| DNA-binding protein HU, putative [Reinekea sp. MED297]
gi|88778664|gb|EAR09855.1| DNA-binding protein HU, putative [Reinekea sp. MED297]
Length = 109
Score = 53.2 bits (127), Expect = 1e-05, Method: Composition-based stats.
Identities = 17/95 (17%), Positives = 37/95 (38%), Gaps = 9/95 (9%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRK-----R 56
K+ ++ IA+ +L+ + V+ +++ L + + + + E G ++ R
Sbjct: 13 TKTQILTEIAENT-ELSKKQVQSVLDELSDVIERHIKKRACGEFVLPGLMKIQTVKKPAR 71
Query: 57 AARLARAPLAQKVISV---EEKMVPFFRAGKNLKE 88
AR P + I + R K LK+
Sbjct: 72 KARPGVNPFTGEEIMIAAKPASTTVKVRPLKKLKD 106
>gi|157828936|ref|YP_001495178.1| integration host factor alpha-subunit [Rickettsia rickettsii str.
'Sheila Smith']
gi|165933660|ref|YP_001650449.1| integration host factor subunit alpha [Rickettsia rickettsii str.
Iowa]
gi|75487853|sp|Q9AKF3|HLP_RICRI RecName: Full=Histone-like DNA-binding protein
gi|13235508|emb|CAC33712.1| Integration host factor alpha-subunit [Rickettsia rickettsii]
gi|157801417|gb|ABV76670.1| integration host factor alpha-subunit [Rickettsia rickettsii str.
'Sheila Smith']
gi|165908747|gb|ABY73043.1| integration host factor alpha-subunit [Rickettsia rickettsii str.
Iowa]
Length = 95
Score = 53.2 bits (127), Expect = 1e-05, Method: Composition-based stats.
Identities = 18/92 (19%), Positives = 42/92 (45%), Gaps = 2/92 (2%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
+ K+ + ++ K + E+IV+ + + + +A ++ ++ FGSF V+++ R
Sbjct: 3 ITKAKIAAMLSSKL-GFSNHLCEEIVHTVFSNILE-IAKAQKLTLKNFGSFEVKQKNPRP 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
+ ++ +E K F LK +N
Sbjct: 61 GINFHTKALVIIESKKHLRFVPSSKLKALINE 92
>gi|257469437|ref|ZP_05633529.1| hypothetical protein FulcA4_08873 [Fusobacterium ulcerans ATCC
49185]
gi|317063681|ref|ZP_07928166.1| predicted protein [Fusobacterium ulcerans ATCC 49185]
gi|313689357|gb|EFS26192.1| predicted protein [Fusobacterium ulcerans ATCC 49185]
Length = 96
Score = 52.8 bits (126), Expect = 1e-05, Method: Composition-based stats.
Identities = 20/96 (20%), Positives = 40/96 (41%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M + I +N ++++V + + + + +AL +V + +G F ++ R
Sbjct: 1 MTEGEFIRFYKTRNKIKSHREVREKIELFWNVLLKALEEDKKVTFKEWGVFERKEMKPRK 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDST 96
P+ +K E + FRAGK L + N
Sbjct: 61 VLVPMWEKPTYTEPREAIKFRAGKGLMKIANGDTDE 96
>gi|282858797|ref|ZP_06267943.1| hypothetical protein HMPREF0648_1395 [Prevotella bivia
JCVIHMP010]
gi|282588425|gb|EFB93584.1| hypothetical protein HMPREF0648_1395 [Prevotella bivia
JCVIHMP010]
Length = 100
Score = 52.8 bits (126), Expect = 1e-05, Method: Composition-based stats.
Identities = 23/83 (27%), Positives = 40/83 (48%), Gaps = 2/83 (2%)
Query: 5 SLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLAR-A 63
L+ AK+ L+ + + + ++ LL +++AL +G + + FGSF +R
Sbjct: 12 ELLQK-AKERSGLSKEVLRQSLHSLLGVISEALDDGKCIVLDNFGSFDLRTVKEHTVTPP 70
Query: 64 PLAQKVISVEEKMVPFFRAGKNL 86
P K I V E V F+ KN+
Sbjct: 71 PPNNKPIVVPEHQVVRFKPYKNI 93
>gi|300776330|ref|ZP_07086188.1| DNA-binding protein HU [Chryseobacterium gleum ATCC 35910]
gi|300501840|gb|EFK32980.1| DNA-binding protein HU [Chryseobacterium gleum ATCC 35910]
Length = 96
Score = 52.8 bits (126), Expect = 1e-05, Method: Composition-based stats.
Identities = 22/67 (32%), Positives = 32/67 (47%), Gaps = 2/67 (2%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGG-RVEIRGFGSFSVRKRAAR 59
M KS LI IA K+ + + + + +T L +V + GFG+FSV +RAAR
Sbjct: 1 MNKSELIDAIA-KDAGITKVAAKAALESFIGNVTTTLKKKDGKVSLVGFGTFSVAERAAR 59
Query: 60 LARAPLA 66
P
Sbjct: 60 QGINPAT 66
>gi|317065089|ref|ZP_07929574.1| predicted protein [Fusobacterium ulcerans ATCC 49185]
gi|313690765|gb|EFS27600.1| predicted protein [Fusobacterium ulcerans ATCC 49185]
Length = 91
Score = 52.8 bits (126), Expect = 1e-05, Method: Composition-based stats.
Identities = 25/88 (28%), Positives = 43/88 (48%), Gaps = 1/88 (1%)
Query: 1 MIKSSLIGTIAKKNP-KLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAAR 59
M K T K +P + + V +++ LE + +AL G V+ G+F V R R
Sbjct: 4 MNKREFAKTYRKISPYEATIETVLTDIDIFLETLREALQIEGEVKFVKRGTFEVISRQPR 63
Query: 60 LARAPLAQKVISVEEKMVPFFRAGKNLK 87
+ P+ ++ ++V K + FRA K +K
Sbjct: 64 VISNPVTRERMTVYPKKIVRFRASKKIK 91
>gi|226330391|ref|ZP_03805909.1| hypothetical protein PROPEN_04309 [Proteus penneri ATCC 35198]
gi|225201186|gb|EEG83540.1| hypothetical protein PROPEN_04309 [Proteus penneri ATCC 35198]
Length = 87
Score = 52.8 bits (126), Expect = 1e-05, Method: Composition-based stats.
Identities = 18/64 (28%), Positives = 36/64 (56%), Gaps = 1/64 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ + + +K ++ +D + +V EE+ ++L NG +V++ GFG+F +R + R
Sbjct: 4 TKAEMAENLFEKL-GVSKRDAKDLVESFFEEVRRSLENGEQVKLSGFGNFDLRDKNQRPG 62
Query: 62 RAPL 65
R P
Sbjct: 63 RNPK 66
>gi|257470887|ref|ZP_05634977.1| hypothetical protein FulcA4_16199 [Fusobacterium ulcerans ATCC
49185]
Length = 88
Score = 52.8 bits (126), Expect = 2e-05, Method: Composition-based stats.
Identities = 25/88 (28%), Positives = 43/88 (48%), Gaps = 1/88 (1%)
Query: 1 MIKSSLIGTIAKKNP-KLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAAR 59
M K T K +P + + V +++ LE + +AL G V+ G+F V R R
Sbjct: 1 MNKREFAKTYRKISPYEATIETVLTDIDIFLETLREALQIEGEVKFVKRGTFEVISRQPR 60
Query: 60 LARAPLAQKVISVEEKMVPFFRAGKNLK 87
+ P+ ++ ++V K + FRA K +K
Sbjct: 61 VISNPVTRERMTVYPKKIVRFRASKKIK 88
>gi|302346019|ref|YP_003814372.1| DNA-binding protein HU [Prevotella melaninogenica ATCC 25845]
gi|302150112|gb|ADK96374.1| DNA-binding protein HU [Prevotella melaninogenica ATCC 25845]
Length = 91
Score = 52.5 bits (125), Expect = 2e-05, Method: Composition-based stats.
Identities = 21/65 (32%), Positives = 36/65 (55%), Gaps = 1/65 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI IA N +++ +K ++ E + +ALA G +V++ GFG+F+ +R A
Sbjct: 1 MNKTELIEKIAA-NAEVSKAAAKKALDATTEAIKEALAAGDKVQLVGFGTFATTERPAHE 59
Query: 61 ARAPL 65
P
Sbjct: 60 GINPR 64
>gi|317063682|ref|ZP_07928167.1| predicted protein [Fusobacterium ulcerans ATCC 49185]
gi|313689358|gb|EFS26193.1| predicted protein [Fusobacterium ulcerans ATCC 49185]
Length = 91
Score = 52.5 bits (125), Expect = 2e-05, Method: Composition-based stats.
Identities = 25/88 (28%), Positives = 44/88 (50%), Gaps = 1/88 (1%)
Query: 1 MIKSSLIGTIAKKNPK-LNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAAR 59
M K + K +P+ L+ D + + +LE + +A+A G V G+F + R R
Sbjct: 4 MNKRKMAKLYVKMSPEKLSITDAIEEITEVLETIKEAIALDGEVRFLKRGAFEILTRQPR 63
Query: 60 LARAPLAQKVISVEEKMVPFFRAGKNLK 87
+ P+ ++ ++V K FRA KN+K
Sbjct: 64 VVSNPVTRERMTVYPKKTVRFRASKNMK 91
>gi|125624460|ref|YP_001032943.1| HU-like DNA-binding protein [Lactococcus lactis subsp. cremoris
MG1363]
gi|124493268|emb|CAL98235.1| HU-like DNA-binding protein [Lactococcus lactis subsp. cremoris
MG1363]
gi|300071248|gb|ADJ60648.1| HU-like DNA-binding protein [Lactococcus lactis subsp. cremoris
NZ9000]
Length = 101
Score = 52.5 bits (125), Expect = 2e-05, Method: Composition-based stats.
Identities = 28/66 (42%), Positives = 41/66 (62%)
Query: 22 VEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLARAPLAQKVISVEEKMVPFFR 81
K +N +E +T ++ G V I FG+F VRKRAAR++ +++ I V E+ +P FR
Sbjct: 3 AAKAINAFVEAITYYISEGATVHISNFGTFEVRKRAARISHDVHSREKILVGEQNIPVFR 62
Query: 82 AGKNLK 87
AGK LK
Sbjct: 63 AGKALK 68
>gi|253584314|ref|ZP_04861512.1| predicted protein [Fusobacterium varium ATCC 27725]
gi|251834886|gb|EES63449.1| predicted protein [Fusobacterium varium ATCC 27725]
Length = 97
Score = 52.5 bits (125), Expect = 2e-05, Method: Composition-based stats.
Identities = 17/94 (18%), Positives = 41/94 (43%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M + I +N + ++ ++ +++ + +AL G+V ++ +G F ++ +
Sbjct: 1 MTEVEFIKFYRDRNNLKSIKEAKEKIDLFWSALLKALDEDGKVILKNWGVFEKKEVKPKK 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSPD 94
++ +E K FR G L+ +N D
Sbjct: 61 MMILKMNEIRLIEGKEKIRFRIGTGLRNLVNGDD 94
>gi|257468667|ref|ZP_05632761.1| non-specific DNA-binding protein HBsu [Fusobacterium ulcerans
ATCC 49185]
gi|317062922|ref|ZP_07927407.1| predicted protein [Fusobacterium ulcerans ATCC 49185]
gi|313688598|gb|EFS25433.1| predicted protein [Fusobacterium ulcerans ATCC 49185]
Length = 96
Score = 52.5 bits (125), Expect = 2e-05, Method: Composition-based stats.
Identities = 23/91 (25%), Positives = 42/91 (46%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M ++ I + N + ++ V + E + L +V +G+GSF V++R A++
Sbjct: 1 MKETEFIREYKRVRELKNLKIAKERVEIFWETLLDILKEEKKVIFKGWGSFEVKERKAKI 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
P +K + F+ GK LK+R N
Sbjct: 61 FNNPKTKKAERIPACKKIIFKQGKLLKKRFN 91
>gi|153839871|ref|ZP_01992538.1| integration host factor beta-subunit [Vibrio parahaemolyticus
AQ3810]
gi|149746604|gb|EDM57592.1| integration host factor beta-subunit [Vibrio parahaemolyticus
AQ3810]
Length = 89
Score = 52.5 bits (125), Expect = 2e-05, Method: Composition-based stats.
Identities = 23/51 (45%), Positives = 31/51 (60%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSF 51
M KS LI + + L+ ++VE V +LE M L +G R+EIRGFGSF
Sbjct: 1 MTKSELIERLCAEQTHLSAKEVEDAVKDILEHMASTLESGDRIEIRGFGSF 51
>gi|257469438|ref|ZP_05633530.1| hypothetical protein FulcA4_08878 [Fusobacterium ulcerans ATCC
49185]
Length = 88
Score = 52.5 bits (125), Expect = 2e-05, Method: Composition-based stats.
Identities = 25/88 (28%), Positives = 44/88 (50%), Gaps = 1/88 (1%)
Query: 1 MIKSSLIGTIAKKNPK-LNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAAR 59
M K + K +P+ L+ D + + +LE + +A+A G V G+F + R R
Sbjct: 1 MNKRKMAKLYVKMSPEKLSITDAIEEITEVLETIKEAIALDGEVRFLKRGAFEILTRQPR 60
Query: 60 LARAPLAQKVISVEEKMVPFFRAGKNLK 87
+ P+ ++ ++V K FRA KN+K
Sbjct: 61 VVSNPVTRERMTVYPKKTVRFRASKNMK 88
>gi|254448116|ref|ZP_05061579.1| bacterial DNA-binding protein [gamma proteobacterium HTCC5015]
gi|198262242|gb|EDY86524.1| bacterial DNA-binding protein [gamma proteobacterium HTCC5015]
Length = 116
Score = 52.5 bits (125), Expect = 2e-05, Method: Composition-based stats.
Identities = 22/93 (23%), Positives = 36/93 (38%), Gaps = 9/93 (9%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRK-----R 56
+ ++ IA + L DV+ +++ L E +T L G + G + R
Sbjct: 11 TTAQVVSYIADQT-GLTKNDVKAVLDSLEEIITLHLKKKGVQKFNFLGMAQFKIDRVARR 69
Query: 57 AARLARAPLAQKVISVEEK---MVPFFRAGKNL 86
AAR R P + I++ K R K L
Sbjct: 70 AARPGRNPATGEEITIPAKPAHNKAKLRVLKKL 102
>gi|75487893|sp|Q9AKK7|HLP_RICMO RecName: Full=Histone-like DNA-binding protein
gi|13235521|emb|CAC33647.1| Integration host factor alpha-subunit [Rickettsia montanensis]
Length = 95
Score = 52.1 bits (124), Expect = 2e-05, Method: Composition-based stats.
Identities = 18/91 (19%), Positives = 40/91 (43%), Gaps = 2/91 (2%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
+ K + ++ K + E+IV+ + + + +A ++ ++ FGSF V+++ R
Sbjct: 3 ITKEKIAAMLSSKL-GFSNNLCEEIVHTVFSNILE-IAKEQKLTLKNFGSFEVKQKNPRP 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
+ + +E K F LK +N
Sbjct: 61 GINFHTKAPVIIESKKNLRFVPSSKLKALIN 91
>gi|67458593|ref|YP_246217.1| integration host factor alpha-subunit [Rickettsia felis
URRWXCal2]
gi|75536941|sp|Q4UN06|HLP_RICFE RecName: Full=Histone-like DNA-binding protein
gi|67004126|gb|AAY61052.1| Integration host factor alpha-subunit [Rickettsia felis
URRWXCal2]
Length = 95
Score = 52.1 bits (124), Expect = 2e-05, Method: Composition-based stats.
Identities = 21/95 (22%), Positives = 41/95 (43%), Gaps = 2/95 (2%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
+ K + ++ K + E+IVN + + + +A ++ ++ FGSF V+++ R
Sbjct: 3 ITKEKIATMLSSKL-GFSNNLCEEIVNTVFFNILE-IAKEQKLTLKNFGSFEVKQKNPRP 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDS 95
+ I +E K F LK +N D
Sbjct: 61 GINFHTKSPIIIESKKNLRFIPSTKLKALINEHDK 95
>gi|39939140|ref|NP_950906.1| nucleoid DNA-binding protein [Onion yellows phytoplasma OY-M]
gi|39722249|dbj|BAD04739.1| bacterial nucleoid DNA-binding protein [Onion yellows phytoplasma
OY-M]
Length = 96
Score = 52.1 bits (124), Expect = 2e-05, Method: Composition-based stats.
Identities = 25/89 (28%), Positives = 40/89 (44%), Gaps = 2/89 (2%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALA-NGGRVEIRGFGSFSVRKRAAR 59
M K LI IA N K + E+ N+ + +A+ N V G F ++ R +
Sbjct: 1 MNKKELIKKIALAN-KTSVTKTEEFYNIFENTLIKAITTNEEVVLFPKIGKFKLKSRKSY 59
Query: 60 LARAPLAQKVISVEEKMVPFFRAGKNLKE 88
+ R P +K I + K V F+ K +K+
Sbjct: 60 IGRNPKTKKKIKISAKTVVTFKLSKTIKD 88
>gi|254785041|ref|YP_003072469.1| DNA-binding protein BpH2 [Teredinibacter turnerae T7901]
gi|237683728|gb|ACR10992.1| DNA-binding protein BpH2 [Teredinibacter turnerae T7901]
Length = 147
Score = 52.1 bits (124), Expect = 2e-05, Method: Composition-based stats.
Identities = 17/94 (18%), Positives = 33/94 (35%), Gaps = 9/94 (9%)
Query: 3 KSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRA----- 57
K+ ++ IA+ +L+ + V +++ L + + + E G F + +
Sbjct: 52 KTQILNQIAENT-ELSRKQVTAVLDELSDIIEGHVKKRSCGEFVMPGLFKIVVQKKPARK 110
Query: 58 ARLARAPLAQKVIS---VEEKMVPFFRAGKNLKE 88
AR P + R K LKE
Sbjct: 111 ARKGINPFTGEETVFAAKPASNAVKIRPLKKLKE 144
>gi|253582642|ref|ZP_04859863.1| predicted protein [Fusobacterium varium ATCC 27725]
gi|251835512|gb|EES64052.1| predicted protein [Fusobacterium varium ATCC 27725]
Length = 94
Score = 52.1 bits (124), Expect = 3e-05, Method: Composition-based stats.
Identities = 20/89 (22%), Positives = 40/89 (44%), Gaps = 1/89 (1%)
Query: 1 MIKSSLIGTIAKKNP-KLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAAR 59
M K L +K + N ++ K +++ + + +AL G ++ G+F V K+ R
Sbjct: 6 MNKKELARVYSKMSKEGTNIKEALKEIDIFTKTVEEALLIKGYIKFIKRGTFMVLKKKPR 65
Query: 60 LARAPLAQKVISVEEKMVPFFRAGKNLKE 88
P ++++ + K F+ K L E
Sbjct: 66 TVSNPSTKELMRIYPKNTVKFKTSKKLVE 94
>gi|322836831|ref|YP_004210745.1| histone family protein DNA-binding protein [Acidobacterium sp.
MP5ACTX9]
gi|321165918|gb|ADW71618.1| histone family protein DNA-binding protein [Acidobacterium sp.
MP5ACTX9]
Length = 132
Score = 52.1 bits (124), Expect = 3e-05, Method: Composition-based stats.
Identities = 23/90 (25%), Positives = 35/90 (38%), Gaps = 1/90 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K +I +A+K +L + L+E G I G G +RAAR+
Sbjct: 39 MSKIQVIRYMAEKT-ELPVGQCAAFLAGLVELALMQTKKNGEFTIPGLGKLVKSQRAARI 97
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P + I + K R K K+ +
Sbjct: 98 GRNPATGESIRIAAKTTVKLRISKAAKDVV 127
>gi|209527523|ref|ZP_03276025.1| histone family protein DNA-binding protein [Arthrospira maxima
CS-328]
gi|209492011|gb|EDZ92364.1| histone family protein DNA-binding protein [Arthrospira maxima
CS-328]
Length = 73
Score = 52.1 bits (124), Expect = 3e-05, Method: Composition-based stats.
Identities = 15/65 (23%), Positives = 31/65 (47%), Gaps = 3/65 (4%)
Query: 24 KIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLARAPLAQKVISVEEKMVPFF--- 80
I+++ ++Q + +G V +RG G F+ +++ AR P + V + V F
Sbjct: 2 AILDLAFSAISQEIESGQPVVVRGLGKFTPKEQPARTKTNPETGETTEVPARTVVNFRVI 61
Query: 81 RAGKN 85
+ K+
Sbjct: 62 KPSKD 66
>gi|257470164|ref|ZP_05634256.1| hypothetical protein FulcA4_12557 [Fusobacterium ulcerans ATCC
49185]
gi|317064383|ref|ZP_07928868.1| predicted protein [Fusobacterium ulcerans ATCC 49185]
gi|313690059|gb|EFS26894.1| predicted protein [Fusobacterium ulcerans ATCC 49185]
Length = 88
Score = 52.1 bits (124), Expect = 3e-05, Method: Composition-based stats.
Identities = 21/88 (23%), Positives = 39/88 (44%), Gaps = 1/88 (1%)
Query: 1 MIKSSLIGTIAK-KNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAAR 59
M + L K + K+ + + LE + +A+A G V+ + G F + R R
Sbjct: 1 MNRKELAKLYQKMSSEKITITKAREEIEKFLETVEEAIAIDGGVKFQERGIFEILTRQPR 60
Query: 60 LARAPLAQKVISVEEKMVPFFRAGKNLK 87
+ P+ ++ + + K FRA K +K
Sbjct: 61 MVSNPVTREQMEIYPKKTVKFRASKKMK 88
>gi|253582650|ref|ZP_04859871.1| predicted protein [Fusobacterium varium ATCC 27725]
gi|251835520|gb|EES64060.1| predicted protein [Fusobacterium varium ATCC 27725]
Length = 101
Score = 52.1 bits (124), Expect = 3e-05, Method: Composition-based stats.
Identities = 17/101 (16%), Positives = 46/101 (45%), Gaps = 2/101 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M + + K+ + ++ ++ V+ + + +L NG +V+ + +G+F +++ R
Sbjct: 1 MGEKEFLKLYMKERELKSLEEAKEKVDTFWKTLKTSLENGEKVKFKDWGNFEMKEVRPRK 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS--PDSTLSN 99
+K I + + F +GK L + +N + ++
Sbjct: 61 IIELQTKKEIIIPKSRKIKFTSGKGLVKSVNVKCKEGKINE 101
>gi|257470064|ref|ZP_05634156.1| hypothetical protein FulcA4_12035 [Fusobacterium ulcerans ATCC
49185]
gi|317064288|ref|ZP_07928773.1| predicted protein [Fusobacterium ulcerans ATCC 49185]
gi|313689964|gb|EFS26799.1| predicted protein [Fusobacterium ulcerans ATCC 49185]
Length = 95
Score = 51.7 bits (123), Expect = 3e-05, Method: Composition-based stats.
Identities = 25/94 (26%), Positives = 42/94 (44%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M ++ I KK N ++V++ ++ + + +AL G+V + +G F RK AR
Sbjct: 1 MTETEFIRFYKKKIKLRNVKEVQERIDTFWKTIFKALEIDGKVTFKDWGVFEKRKHGARR 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSPD 94
E K V FRAGK + ++N
Sbjct: 61 YILASLGIDNMTENKEVIKFRAGKGFENKINKEK 94
>gi|197294200|ref|YP_001798741.1| DNA-binding protein HU [Candidatus Phytoplasma australiense]
gi|197294218|ref|YP_001798759.1| DNA-binding protein HU [Candidatus Phytoplasma australiense]
gi|197294452|ref|YP_001798993.1| DNA-binding protein HU [Candidatus Phytoplasma australiense]
gi|171853527|emb|CAM11377.1| DNA-binding protein HU [Candidatus Phytoplasma australiense]
gi|171853545|emb|CAM11405.1| DNA-binding protein HU [Candidatus Phytoplasma australiense]
gi|171853779|emb|CAM11711.1| DNA-binding protein HU [Candidatus Phytoplasma australiense]
Length = 105
Score = 51.7 bits (123), Expect = 3e-05, Method: Composition-based stats.
Identities = 17/80 (21%), Positives = 31/80 (38%), Gaps = 1/80 (1%)
Query: 16 KLNYQDVEKIVNMLLEEMTQALANGGRVEI-RGFGSFSVRKRAARLARAPLAQKVISVEE 74
+ + N + +A+ + V I G F ++ R A R P K + +
Sbjct: 24 NTSVTQTQDFYNSFENALIEAIKSNEEVIISPKIGKFILKSRKAHKGRNPQTGKKLKIPA 83
Query: 75 KMVPFFRAGKNLKERLNSPD 94
K V F+ K LK+ + +
Sbjct: 84 KTVVNFKLSKTLKDEVKNLK 103
>gi|257470535|ref|ZP_05634625.1| HU family DNA-binding protein [Fusobacterium ulcerans ATCC 49185]
gi|317064742|ref|ZP_07929227.1| predicted protein [Fusobacterium ulcerans ATCC 49185]
gi|313690418|gb|EFS27253.1| predicted protein [Fusobacterium ulcerans ATCC 49185]
Length = 96
Score = 51.7 bits (123), Expect = 3e-05, Method: Composition-based stats.
Identities = 22/88 (25%), Positives = 38/88 (43%), Gaps = 1/88 (1%)
Query: 1 MIKSSLIGTI-AKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAAR 59
M K K++ ++ K +N+LLE + + L G+V G F V + AR
Sbjct: 1 MNKGDFTKIYRKMDRTKVSLKEAAKDINVLLETIKEGLKISGKVSFAKRGIFEVVDKKAR 60
Query: 60 LARAPLAQKVISVEEKMVPFFRAGKNLK 87
P +++ ++ + FR K LK
Sbjct: 61 NIANPSTWEIMRIKPRRTVRFRTSKPLK 88
>gi|257468469|ref|ZP_05632563.1| hypothetical protein FulcA4_03949 [Fusobacterium ulcerans ATCC
49185]
gi|317062730|ref|ZP_07927215.1| predicted protein [Fusobacterium ulcerans ATCC 49185]
gi|313688406|gb|EFS25241.1| predicted protein [Fusobacterium ulcerans ATCC 49185]
Length = 96
Score = 51.7 bits (123), Expect = 3e-05, Method: Composition-based stats.
Identities = 22/96 (22%), Positives = 45/96 (46%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M + I K+N ++++V + +++ + +AL +V ++ +G F R+R R
Sbjct: 1 MTEGEFIRFYKKRNNSKSHKEVREKIDLFWNVLLKALDEDKKVILKNWGVFEKRERKVRK 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDST 96
P +K ++ K + FR GK+L + N
Sbjct: 61 VLVPTWEKAQYIKPKEIVKFRTGKSLIKIANGDTDE 96
>gi|197294765|ref|YP_001799306.1| DNA-binding protein HU [Candidatus Phytoplasma australiense]
gi|171854092|emb|CAM12072.1| DNA-binding protein HU [Candidatus Phytoplasma australiense]
Length = 105
Score = 51.7 bits (123), Expect = 3e-05, Method: Composition-based stats.
Identities = 17/80 (21%), Positives = 31/80 (38%), Gaps = 1/80 (1%)
Query: 16 KLNYQDVEKIVNMLLEEMTQALANGGRVEI-RGFGSFSVRKRAARLARAPLAQKVISVEE 74
+ + N + +A+ + V I G F ++ R A R P K + +
Sbjct: 24 NTSVTQTQDFYNSFENALIEAIKSNEEVIISPKIGKFILKSRKAHKGRNPQTGKKLKIPA 83
Query: 75 KMVPFFRAGKNLKERLNSPD 94
K V F+ K LK+ + +
Sbjct: 84 KTVVNFKLSKTLKDDVKNLK 103
>gi|257470534|ref|ZP_05634624.1| DNA-binding protein HU-beta [Fusobacterium ulcerans ATCC 49185]
gi|317064741|ref|ZP_07929226.1| predicted protein [Fusobacterium ulcerans ATCC 49185]
gi|313690417|gb|EFS27252.1| predicted protein [Fusobacterium ulcerans ATCC 49185]
Length = 95
Score = 51.7 bits (123), Expect = 3e-05, Method: Composition-based stats.
Identities = 22/90 (24%), Positives = 37/90 (41%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M + I N ++ ++ + + L +V +G+G F ++ +R
Sbjct: 1 MKEKDFIKLYKNNRGLKNLEEAKEKIETFWTTLFTVLEEEEKVTFKGWGIFRKKEMNSRK 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
P +K I K V FRAGK LKE +
Sbjct: 61 VILPKNKKTIYTTPKTVIKFRAGKELKESM 90
>gi|294660441|ref|NP_853203.2| histone-like DNA-binding superfamily protein HimA/HU/Integration
host factor [Mycoplasma gallisepticum str. R(low)]
gi|516627|gb|AAA91332.1| open reading frame ORF99; putative [Mycoplasma gallisepticum]
gi|284812101|gb|AAP56771.2| histone-like DNA-binding superfamily protein HimA/HU/Integration
host factor [Mycoplasma gallisepticum str. R(low)]
gi|284930685|gb|ADC30624.1| histone-like DNA-binding superfamily protein HimA/HU/Integration
host factor [Mycoplasma gallisepticum str. R(high)]
gi|284931405|gb|ADC31343.1| histone-like DNA-binding superfamily protein HimA/HU/Integration
host factor [Mycoplasma gallisepticum str. F]
Length = 99
Score = 51.7 bits (123), Expect = 4e-05, Method: Composition-based stats.
Identities = 18/91 (19%), Positives = 35/91 (38%), Gaps = 1/91 (1%)
Query: 4 SSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLARA 63
+ + +A + L QD+ +V L + + + LA G V + G F + R
Sbjct: 10 AEYLKEMADET-NLKVQDIRLVVTSLQKVLAKELATTGEVRLFDIGKFKLVATKPRTGIN 68
Query: 64 PLAQKVISVEEKMVPFFRAGKNLKERLNSPD 94
P ++ I + K L + ++S
Sbjct: 69 PKTKQKIQIPAGKKIKLTVSKILTDAVDSHK 99
>gi|325107670|ref|YP_004268738.1| histone family protein DNA-binding protein [Planctomyces
brasiliensis DSM 5305]
gi|324967938|gb|ADY58716.1| histone family protein DNA-binding protein [Planctomyces
brasiliensis DSM 5305]
Length = 126
Score = 51.7 bits (123), Expect = 4e-05, Method: Composition-based stats.
Identities = 21/99 (21%), Positives = 45/99 (45%), Gaps = 10/99 (10%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGR--VEIRGFGSFSVRKRAA 58
M K+ L+ ++++ L+ +DV +++ L E + + L G + G V+++ A
Sbjct: 29 MSKTELLTSLSEST-GLSKKDVSAVLDGLGEVIQKNLGKRGPGVFNLPGLLKIQVQRKPA 87
Query: 59 RLAR---AP-LAQKVISV---EEKMVPFFRAGKNLKERL 90
A P ++++V + V R K LK+ +
Sbjct: 88 TKATTRENPFKPGEMMTVKAKPARNVVKVRPLKGLKDMV 126
>gi|157826134|ref|YP_001493854.1| integration host factor alpha-subunit [Rickettsia akari str.
Hartford]
gi|157800092|gb|ABV75346.1| Integration host factor alpha-subunit [Rickettsia akari str.
Hartford]
Length = 96
Score = 51.3 bits (122), Expect = 4e-05, Method: Composition-based stats.
Identities = 18/96 (18%), Positives = 39/96 (40%), Gaps = 2/96 (2%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
+ K + ++ K + ++IVN + + + +A ++ ++ FG F V+ + R
Sbjct: 3 ITKEKISAMLSSKL-GFSNNLCKEIVNTVFSNILE-IAREQKLTLKNFGRFEVKHKNPRP 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDST 96
+ + +E K F LK +N D
Sbjct: 61 GINFHTKSPVIIESKKSLRFVPSAKLKALVNKHDKQ 96
>gi|294054815|ref|YP_003548473.1| histone family protein DNA-binding protein [Coraliomargarita
akajimensis DSM 45221]
gi|293614148|gb|ADE54303.1| histone family protein DNA-binding protein [Coraliomargarita
akajimensis DSM 45221]
Length = 107
Score = 51.3 bits (122), Expect = 4e-05, Method: Composition-based stats.
Identities = 20/107 (18%), Positives = 40/107 (37%), Gaps = 17/107 (15%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGR-----------------V 43
M K L+ + K+ + + + ++ + +AL +
Sbjct: 1 MTKIELVEALQKELGLESKAEATRTLDAVGAVYLKALKKAAKEIKKPKKGEPAVKPAVVA 60
Query: 44 EIRGFGSFSVRKRAARLARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
+ G G+F V A R R PL ++V+ K F+A ++ +L
Sbjct: 61 PLPGVGNFYVGASAPRKGRNPLDGSTVNVKAKKKISFKAAPSISAKL 107
>gi|317503238|ref|ZP_07961296.1| conserved hypothetical protein [Prevotella salivae DSM 15606]
gi|315665651|gb|EFV05260.1| conserved hypothetical protein [Prevotella salivae DSM 15606]
Length = 436
Score = 51.3 bits (122), Expect = 4e-05, Method: Composition-based stats.
Identities = 19/94 (20%), Positives = 43/94 (45%), Gaps = 2/94 (2%)
Query: 1 MIK-SSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAAR 59
M L + +K+ + D E ++++ E + + + +V+I+G G+F + ++R
Sbjct: 1 MTNIKDLARFLVEKH-GIKLADAELFISLMTEIINEGVHRERQVKIKGLGTFKLTSVSSR 59
Query: 60 LARAPLAQKVISVEEKMVPFFRAGKNLKERLNSP 93
+ + I +E + F +KE +N P
Sbjct: 60 ESIDVNTGERIVIEGRDKLSFAPDNAMKELVNQP 93
>gi|288800014|ref|ZP_06405473.1| DNA-binding protein HU [Prevotella sp. oral taxon 299 str. F0039]
gi|288333262|gb|EFC71741.1| DNA-binding protein HU [Prevotella sp. oral taxon 299 str. F0039]
Length = 458
Score = 51.3 bits (122), Expect = 4e-05, Method: Composition-based stats.
Identities = 20/88 (22%), Positives = 42/88 (47%), Gaps = 1/88 (1%)
Query: 6 LIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLARAPL 65
LI + K L + E ++++ + + + L V+I+G G+F + K +AR +
Sbjct: 7 LIEMLTSKM-GLEVAEAETFISVMFKVVNEGLREDKLVKIKGLGTFKLTKVSARESVDVN 65
Query: 66 AQKVISVEEKMVPFFRAGKNLKERLNSP 93
+ I +E + F +++ +NSP
Sbjct: 66 TGERIVLEGRDKISFTPDNYMRDLVNSP 93
>gi|303257527|ref|ZP_07343539.1| putative integration host factor subunit alpha (IHF-alpha)
[Burkholderiales bacterium 1_1_47]
gi|331000208|ref|ZP_08323892.1| DNA-binding protein HU [Parasutterella excrementihominis YIT 11859]
gi|302859497|gb|EFL82576.1| putative integration host factor subunit alpha (IHF-alpha)
[Burkholderiales bacterium 1_1_47]
gi|329572374|gb|EGG54027.1| DNA-binding protein HU [Parasutterella excrementihominis YIT 11859]
Length = 118
Score = 51.3 bits (122), Expect = 5e-05, Method: Composition-based stats.
Identities = 17/91 (18%), Positives = 40/91 (43%), Gaps = 1/91 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M +S+L + ++ + + V + ++ LA G V++ G F + RA ++
Sbjct: 22 MNRSTLEEVLFEEL-GFSREMSRVFVTQFFQTISDVLATGEEVKLTTLGRFEICGRAYKM 80
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
P A++ ++ +F K L + ++
Sbjct: 81 FFDPEAKEWFDAPTRLDVYFHPSKKLTDFID 111
>gi|253583928|ref|ZP_04861126.1| predicted protein [Fusobacterium varium ATCC 27725]
gi|251834500|gb|EES63063.1| predicted protein [Fusobacterium varium ATCC 27725]
Length = 101
Score = 50.9 bits (121), Expect = 6e-05, Method: Composition-based stats.
Identities = 22/95 (23%), Positives = 42/95 (44%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M + I +N N ++ +K +++ + +AL G+V ++ +G F ++ A R
Sbjct: 5 MKEGEFIRFYRDRNCLRNIKEAKKKIDLFWTVVLKALDEDGKVLLKDWGVFEKKEVAPRK 64
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDS 95
P +K + FR G LK +N D+
Sbjct: 65 IMTPRMEKERVTKAGEKIIFRTGTGLKTLVNGADA 99
>gi|257468390|ref|ZP_05632484.1| hypothetical protein FulcA4_03554 [Fusobacterium ulcerans ATCC
49185]
gi|317062663|ref|ZP_07927148.1| predicted protein [Fusobacterium ulcerans ATCC 49185]
gi|313688339|gb|EFS25174.1| predicted protein [Fusobacterium ulcerans ATCC 49185]
Length = 96
Score = 50.9 bits (121), Expect = 6e-05, Method: Composition-based stats.
Identities = 23/96 (23%), Positives = 46/96 (47%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M + I K+N N++ V++ +++ + + +AL +V ++ +G F ++R AR
Sbjct: 1 MTEGEFIRFYKKRNKIKNHKAVKEKIDLFWDVLLKALDEDKKVALQNWGVFEKKERKARK 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDST 96
P+ ++ E K F+AGK L + N
Sbjct: 61 VLMPMWEEAGYTEPKEAVKFKAGKALVKIANGDKDE 96
>gi|72383831|ref|YP_293185.1| histone-like DNA-binding protein [Ralstonia eutropha JMP134]
gi|72123174|gb|AAZ65328.1| Histone-like bacterial DNA-binding protein [Ralstonia eutropha
JMP134]
Length = 202
Score = 50.9 bits (121), Expect = 6e-05, Method: Composition-based stats.
Identities = 19/96 (19%), Positives = 36/96 (37%), Gaps = 9/96 (9%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRK-----R 56
KSSL+ + ++ +L + V+ ++ L + A+ G E G F V+
Sbjct: 106 NKSSLLAHLIEQT-QLEKKTVQTVLAHLENTIVSAIHKKGAGEFTLPGLFKVQAIQVPAT 164
Query: 57 AARLARAPLAQKV---ISVEEKMVPFFRAGKNLKER 89
R + P + + + R K LK+
Sbjct: 165 KKRFGKNPFTGQDQWFAAKPASVKVKVRPLKKLKDA 200
>gi|225851318|ref|YP_002731552.1| DNA-binding protein HU 1 (DNA-binding protein II) (HB)
[Persephonella marina EX-H1]
gi|225646385|gb|ACO04571.1| DNA-binding protein HU 1 (DNA-binding protein II) (HB)
[Persephonella marina EX-H1]
Length = 92
Score = 50.9 bits (121), Expect = 6e-05, Method: Composition-based stats.
Identities = 22/94 (23%), Positives = 43/94 (45%), Gaps = 5/94 (5%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M L ++ KN ++ + +K+V + + + G R+++ GFG F + R++R
Sbjct: 1 MTYKELKIQVS-KNAQVPVEVADKVVEEVFHTLKSVMLRGDRLQVPGFGVFYTKIRSSRK 59
Query: 61 ARAPLA-QKVISVEEKMVPFFRAGKNLKERLNSP 93
++ + K VP F K LK+ + S
Sbjct: 60 V---KTHGEIKQLPSKRVPVFAPAKALKKEIESN 90
>gi|192361184|ref|YP_001982926.1| DNA-binding protein HU family [Cellvibrio japonicus Ueda107]
gi|190687349|gb|ACE85027.1| DNA-binding protein HU family [Cellvibrio japonicus Ueda107]
Length = 159
Score = 50.5 bits (120), Expect = 6e-05, Method: Composition-based stats.
Identities = 17/95 (17%), Positives = 32/95 (33%), Gaps = 9/95 (9%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIR-----GFGSFSVRKR 56
KS ++ I +L+ + V+ +++ L + + G E +
Sbjct: 63 NKSQIVQQIVDAT-ELSKKQVQAVLDELSNVIEGHIKKKGVGEFVLPGLLKITTVKKPAT 121
Query: 57 AARLARAPLAQKVIS---VEEKMVPFFRAGKNLKE 88
AR P + ++ RA K LKE
Sbjct: 122 KARKGINPFTGEEVTFKAKPASTSVKVRALKKLKE 156
>gi|225849333|ref|YP_002729497.1| integration host factor subunit beta [Sulfurihydrogenibium
azorense Az-Fu1]
gi|225643457|gb|ACN98507.1| integration host factor, beta subunit [Sulfurihydrogenibium
azorense Az-Fu1]
Length = 90
Score = 50.5 bits (120), Expect = 7e-05, Method: Composition-based stats.
Identities = 25/94 (26%), Positives = 49/94 (52%), Gaps = 6/94 (6%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M KS ++ + +K ++ ++++K+V+ + ++M + LA+G ++EIR G+F V KR L
Sbjct: 1 MKKSDIVKILKEKYTNIDSKEIKKVVDAIFDKMIEGLASGEKIEIRKLGTFKVLKRKKPL 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSPD 94
+ V F+ GK LK + +
Sbjct: 61 ------KGKKRVSYSKTVHFKPGKILKRAFKNME 88
>gi|307564882|ref|ZP_07627407.1| DNA-binding protein HU [Prevotella amnii CRIS 21A-A]
gi|307346418|gb|EFN91730.1| DNA-binding protein HU [Prevotella amnii CRIS 21A-A]
Length = 89
Score = 50.5 bits (120), Expect = 7e-05, Method: Composition-based stats.
Identities = 18/92 (19%), Positives = 36/92 (39%), Gaps = 3/92 (3%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ ++ + L K ++ + ++L G V +RGF + V R+
Sbjct: 1 MKKNEILSEVIDAT-DLTRSQAVKAYEAIINAIKKSLIKGEDVTLRGFATLKVVHVKERV 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
+ L K + +A + LK+ +N
Sbjct: 60 SG--LHGKKTVIPAHKTVKIKACQELKKLINK 89
>gi|288802184|ref|ZP_06407624.1| integration host factor IHF alpha subunit [Prevotella
melaninogenica D18]
gi|288335151|gb|EFC73586.1| integration host factor IHF alpha subunit [Prevotella
melaninogenica D18]
Length = 455
Score = 50.5 bits (120), Expect = 7e-05, Method: Composition-based stats.
Identities = 24/95 (25%), Positives = 43/95 (45%), Gaps = 2/95 (2%)
Query: 1 MIKSSL--IGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAA 58
M KS++ I + K L+ D V+ + ++ L NG +V+I+G G+F V+
Sbjct: 1 MAKSAIQLITSALAKQHNLSVADAAAFVDAFFDIISSELKNGNQVKIKGLGTFKVQAVKP 60
Query: 59 RLARAPLAQKVISVEEKMVPFFRAGKNLKERLNSP 93
R + + + +E F +KE +N P
Sbjct: 61 RESVNVNTGERVLIEGHDKISFTPDTVMKELVNKP 95
>gi|315022339|gb|EFT35367.1| DNA-binding protein HU-beta [Riemerella anatipestifer RA-YM]
Length = 87
Score = 50.5 bits (120), Expect = 8e-05, Method: Composition-based stats.
Identities = 24/86 (27%), Positives = 41/86 (47%), Gaps = 1/86 (1%)
Query: 12 KKNPKLNYQDVEKIVNMLLEEMTQALANGG-RVEIRGFGSFSVRKRAARLARAPLAQKVI 70
K+ ++ +K + + +T+ L +V + GFG+FSV +RAAR P +K I
Sbjct: 2 AKDAEITKAAAKKALESFVNAVTETLKKKDGKVSLVGFGTFSVAERAARQGINPATKKAI 61
Query: 71 SVEEKMVPFFRAGKNLKERLNSPDST 96
+ K V F+AG L + +
Sbjct: 62 KIPAKKVAKFKAGSELADAVAGAKKK 87
>gi|227889959|ref|ZP_04007764.1| DNA-binding protein HU [Lactobacillus johnsonii ATCC 33200]
gi|227849403|gb|EEJ59489.1| DNA-binding protein HU [Lactobacillus johnsonii ATCC 33200]
Length = 64
Score = 50.5 bits (120), Expect = 8e-05, Method: Composition-based stats.
Identities = 21/61 (34%), Positives = 34/61 (55%), Gaps = 1/61 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
+ K+ LI +A+ LN ++ ++ + + ALA +V++ GFGSF VR RAAR
Sbjct: 4 INKAELIKEVAEST-DLNKTQSDQAIDAVFSAIQNALAKDEKVQLIGFGSFEVRNRAARK 62
Query: 61 A 61
Sbjct: 63 G 63
>gi|298373792|ref|ZP_06983781.1| DNA-binding protein HU [Bacteroidetes oral taxon 274 str. F0058]
gi|298274844|gb|EFI16396.1| DNA-binding protein HU [Bacteroidetes oral taxon 274 str. F0058]
Length = 94
Score = 50.5 bits (120), Expect = 8e-05, Method: Composition-based stats.
Identities = 19/92 (20%), Positives = 38/92 (41%), Gaps = 1/92 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M LI +++ + ++ ++ +EE++ L G +E FG R ++
Sbjct: 1 MDNKELIVKLSRSTKA-TQEKTKEFLDAFVEEISDKLGAGNHIEFLDFGVLQTVVREQKI 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
P QK K V + K++KE + +
Sbjct: 60 ITNPKTQKRTLYPPKNVVELKVTKSVKEHIKN 91
>gi|153841627|ref|ZP_01993426.1| DNA-binding protein HU [Vibrio parahaemolyticus AQ3810]
gi|149745458|gb|EDM56709.1| DNA-binding protein HU [Vibrio parahaemolyticus AQ3810]
Length = 137
Score = 50.2 bits (119), Expect = 9e-05, Method: Composition-based stats.
Identities = 11/38 (28%), Positives = 17/38 (44%)
Query: 59 RLARAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDST 96
R R P + I + + V FR G+ LK R+ +
Sbjct: 99 RPGRNPKTGEDIPITARRVVTFRPGQKLKARVENLKKE 136
>gi|119504254|ref|ZP_01626334.1| DNA-binding protein HU, putative [marine gamma proteobacterium
HTCC2080]
gi|119459762|gb|EAW40857.1| DNA-binding protein HU, putative [marine gamma proteobacterium
HTCC2080]
Length = 141
Score = 50.2 bits (119), Expect = 9e-05, Method: Composition-based stats.
Identities = 20/100 (20%), Positives = 33/100 (33%), Gaps = 9/100 (9%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKR---- 56
M K+ ++GTIA L + V ++ + + ++ G E G +
Sbjct: 43 MTKTQIVGTIADNT-GLTKKQVSDVMQQMDALVEGSIKKRGAGEFTIPGMMKITTVRKPA 101
Query: 57 -AARLARAPLAQKVIS---VEEKMVPFFRAGKNLKERLNS 92
AR P + R K +KE NS
Sbjct: 102 VKARKGINPFTGEETMFKAKPASTAVKIRPLKKMKEFANS 141
>gi|302346575|ref|YP_003814873.1| DNA-binding protein HU [Prevotella melaninogenica ATCC 25845]
gi|302151149|gb|ADK97410.1| DNA-binding protein HU [Prevotella melaninogenica ATCC 25845]
Length = 455
Score = 50.2 bits (119), Expect = 1e-04, Method: Composition-based stats.
Identities = 24/95 (25%), Positives = 43/95 (45%), Gaps = 2/95 (2%)
Query: 1 MIKSSL--IGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAA 58
M KS++ I + K L+ D V+ + ++ L NG +V+I+G G+F V+
Sbjct: 1 MAKSAIQLITSALAKQHNLSADDAAAFVDAFFDIISSELKNGNQVKIKGLGTFKVQAVKP 60
Query: 59 RLARAPLAQKVISVEEKMVPFFRAGKNLKERLNSP 93
R + + + +E F +KE +N P
Sbjct: 61 RESVNVNTGERVLIEGHDKISFTPDTVMKELVNKP 95
>gi|154707087|ref|YP_001423674.1| DNA-binding protein [Coxiella burnetii Dugway 5J108-111]
gi|165923916|ref|ZP_02219748.1| DNA-binding protein BpH2 [Coxiella burnetii RSA 334]
gi|154356373|gb|ABS77835.1| bacterial DNA-binding protein [Coxiella burnetii Dugway 5J108-111]
gi|165916641|gb|EDR35245.1| DNA-binding protein BpH2 [Coxiella burnetii RSA 334]
Length = 149
Score = 50.2 bits (119), Expect = 1e-04, Method: Composition-based stats.
Identities = 23/96 (23%), Positives = 39/96 (40%), Gaps = 9/96 (9%)
Query: 3 KSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKR-----A 57
KS L IA+ L+ ++V +++ L + M + L G E G +
Sbjct: 54 KSQLTTHIAEAT-NLSKKEVSAVLDELADVMHRHLRKGAAGEFTLPGLVKCTVKRKPATK 112
Query: 58 ARLARAPLAQKVIS---VEEKMVPFFRAGKNLKERL 90
AR P ++++ + V RA K LKE +
Sbjct: 113 ARKGINPFTGEMMTFKAKPARNVVKVRALKRLKEMV 148
>gi|330938918|gb|EGH42423.1| HU family DNA-binding protein [Pseudomonas syringae pv. pisi str.
1704B]
Length = 68
Score = 50.2 bits (119), Expect = 1e-04, Method: Composition-based stats.
Identities = 17/66 (25%), Positives = 24/66 (36%), Gaps = 1/66 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K LI IA+ + L + + L NG + + G G V +R AR
Sbjct: 4 TKDQLIADIAEAI-DAPKTTARNALEQLGQIVADQLENGVEITLPGIGKLKVAERPARTG 62
Query: 62 RAPLAQ 67
R P
Sbjct: 63 RNPSTG 68
>gi|253582816|ref|ZP_04860036.1| predicted protein [Fusobacterium varium ATCC 27725]
gi|251835392|gb|EES63933.1| predicted protein [Fusobacterium varium ATCC 27725]
Length = 93
Score = 50.2 bits (119), Expect = 1e-04, Method: Composition-based stats.
Identities = 21/91 (23%), Positives = 40/91 (43%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M + I ++ N ++ + ++ E + + L ++ +G+G F ++ AR
Sbjct: 1 MKEKDFIKVYKEERNLKNLKEAQHRISTFWETVEEILQEDKKLVFKGWGIFEIKPVRARE 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
P +K+ K FR GK LKE +N
Sbjct: 61 YCDPRIKKIKKTLPKNKLVFRQGKILKENIN 91
>gi|260588231|ref|ZP_05854144.1| putative DNA-binding protein HU-alpha [Blautia hansenii DSM 20583]
gi|260541369|gb|EEX21938.1| putative DNA-binding protein HU-alpha [Blautia hansenii DSM 20583]
Length = 117
Score = 49.8 bits (118), Expect = 1e-04, Method: Composition-based stats.
Identities = 19/97 (19%), Positives = 36/97 (37%), Gaps = 6/97 (6%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQAL---ANGGRVEIRGFGSFSVRKR- 56
M ++ +A+ ++V ++++ + + + + VEIR F V
Sbjct: 22 MTTKEMVKGVAE-LTGKTQKEVREVLDGIEDVVMAQVGQATEDNSVEIRLFNGLYVTSEF 80
Query: 57 -AARLARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
A AR P + + E K + G LK N
Sbjct: 81 VAPHTARNPRTGETFTAEGKNRVKAKIGAALKNAANQ 117
>gi|254281566|ref|ZP_04956534.1| bacterial DNA-binding protein [gamma proteobacterium NOR51-B]
gi|219677769|gb|EED34118.1| bacterial DNA-binding protein [gamma proteobacterium NOR51-B]
Length = 139
Score = 49.8 bits (118), Expect = 1e-04, Method: Composition-based stats.
Identities = 19/100 (19%), Positives = 33/100 (33%), Gaps = 9/100 (9%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEI-----RGFGSFSVRK 55
M K+ ++G+IA+ LN + V ++ L + ++ E +
Sbjct: 41 MTKTQIVGSIAEST-GLNKKQVGDVLGELESLIQGSIKKRAVGEFTLPGLMKVTTVRKPA 99
Query: 56 RAARLARAPLAQKVIS---VEEKMVPFFRAGKNLKERLNS 92
AR P + R K +KE NS
Sbjct: 100 VKARKGINPFTGEETMFKAKPASTAVKIRPLKKMKEFANS 139
>gi|253583855|ref|ZP_04861053.1| predicted protein [Fusobacterium varium ATCC 27725]
gi|251834427|gb|EES62990.1| predicted protein [Fusobacterium varium ATCC 27725]
Length = 89
Score = 49.8 bits (118), Expect = 1e-04, Method: Composition-based stats.
Identities = 21/89 (23%), Positives = 44/89 (49%), Gaps = 1/89 (1%)
Query: 1 MIKSSLIG-TIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAAR 59
M K L I +++ + + +++ L+ M +AL G+V+ G+F V K+ R
Sbjct: 1 MNKMELAKLYIKASKSEISIKKAVEEIDIFLKTMQEALVISGKVKFMKKGTFEVLKKEPR 60
Query: 60 LARAPLAQKVISVEEKMVPFFRAGKNLKE 88
+ P ++++ + + FRA K++ E
Sbjct: 61 IISNPSTRELMKIYPRRTVKFRASKSIME 89
>gi|330884084|gb|EGH18233.1| single-stranded binding protein [Pseudomonas syringae pv.
glycinea str. race 4]
Length = 71
Score = 49.8 bits (118), Expect = 1e-04, Method: Composition-based stats.
Identities = 18/69 (26%), Positives = 28/69 (40%)
Query: 24 KIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLARAPLAQKVISVEEKMVPFFRAG 83
K + L + + L +G + + G G V +R AR R P I + K F
Sbjct: 1 KALEQLGQIVADQLESGAEITLPGIGKLKVAERPARTGRNPSTGAAIEIAAKKAIKFVPA 60
Query: 84 KNLKERLNS 92
K L + +N
Sbjct: 61 KVLNDLINK 69
>gi|253584284|ref|ZP_04861482.1| predicted protein [Fusobacterium varium ATCC 27725]
gi|251834856|gb|EES63419.1| predicted protein [Fusobacterium varium ATCC 27725]
Length = 94
Score = 49.8 bits (118), Expect = 1e-04, Method: Composition-based stats.
Identities = 22/89 (24%), Positives = 44/89 (49%), Gaps = 1/89 (1%)
Query: 1 MIKSSLIGTIAKKNPK-LNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAAR 59
M K L +K + +N + + +++ LE + +AL G+V+ G+F V K+ AR
Sbjct: 6 MNKKELAKIYSKISKNMINVKRAIEEIDVFLETVQEALLVDGKVKFIKRGTFEVLKKKAR 65
Query: 60 LARAPLAQKVISVEEKMVPFFRAGKNLKE 88
+ P ++++ + K F+ K L +
Sbjct: 66 IISNPSTRELMKIYPKKTIKFKISKELIK 94
>gi|304312892|ref|YP_003812490.1| hypothetical protein HDN1F_32740 [gamma proteobacterium HdN1]
gi|301798625|emb|CBL46857.1| Hypothetical protein HDN1F_32740 [gamma proteobacterium HdN1]
Length = 153
Score = 49.8 bits (118), Expect = 1e-04, Method: Composition-based stats.
Identities = 16/94 (17%), Positives = 34/94 (36%), Gaps = 9/94 (9%)
Query: 3 KSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRK-----RA 57
K+ ++ IA+ L + V+ +++ L + + + G + G +
Sbjct: 58 KTQILSEIAENT-GLAKKQVQGVLDELNSLIARHIGKKGVGQFTVPGLMKITVVNKPATR 116
Query: 58 ARLARAPLAQKVIS---VEEKMVPFFRAGKNLKE 88
AR P + + + V R K LK+
Sbjct: 117 ARKGINPFTGEETTFKAKPARNVVKVRPLKKLKD 150
>gi|257470886|ref|ZP_05634976.1| hypothetical protein FulcA4_16194 [Fusobacterium ulcerans ATCC
49185]
gi|317065088|ref|ZP_07929573.1| predicted protein [Fusobacterium ulcerans ATCC 49185]
gi|313690764|gb|EFS27599.1| predicted protein [Fusobacterium ulcerans ATCC 49185]
Length = 96
Score = 49.8 bits (118), Expect = 1e-04, Method: Composition-based stats.
Identities = 22/88 (25%), Positives = 45/88 (51%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M + I K+N ++++V++ +++ + + +AL +V + +G F R+ +R
Sbjct: 1 MTEGKFIRFYKKRNKCRSHKEVKEKIDLFWDALLKALEEDKKVVFKDWGVFEKRETKSRK 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKE 88
+ P+ + E K V FRAGK L +
Sbjct: 61 IKMPMWKGERYTEPKEVIKFRAGKGLIK 88
>gi|257470500|ref|ZP_05634590.1| hypothetical protein FulcA4_14234 [Fusobacterium ulcerans ATCC
49185]
gi|317064707|ref|ZP_07929192.1| predicted protein [Fusobacterium ulcerans ATCC 49185]
gi|313690383|gb|EFS27218.1| predicted protein [Fusobacterium ulcerans ATCC 49185]
Length = 93
Score = 49.8 bits (118), Expect = 1e-04, Method: Composition-based stats.
Identities = 21/91 (23%), Positives = 39/91 (42%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M + I + N ++ + ++ E + + L ++ +G+G F ++ AR
Sbjct: 1 MKEKDFIKVYKDERNLKNLKEAQHRISTFWETVEEILQEDKKLVFKGWGIFEIKPVRARE 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
P +K+ K FR GK LKE +N
Sbjct: 61 YCDPRIKKIKKTLPKNKLVFRQGKILKENIN 91
>gi|88608036|ref|YP_506518.1| DNA-binding protein HU [Neorickettsia sennetsu str. Miyayama]
gi|88600205|gb|ABD45673.1| DNA-binding protein HU [Neorickettsia sennetsu str. Miyayama]
Length = 93
Score = 49.8 bits (118), Expect = 1e-04, Method: Composition-based stats.
Identities = 18/87 (20%), Positives = 36/87 (41%), Gaps = 1/87 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M LI +A+ ++ ++ +N L E + ++L + I G+ SV K+ A
Sbjct: 1 MKNVDLINVVAE-GASISKGHAKRAINALYEYIYESLKRRKSIRIPKIGTLSVVKKKATT 59
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLK 87
P ++++ E F +K
Sbjct: 60 YCDPKTKQMVRQAETERVKFTISSVVK 86
>gi|146340621|ref|YP_001205669.1| DNA-binding protein HU [Bradyrhizobium sp. ORS278]
gi|146193427|emb|CAL77443.1| DNA-binding protein HU [Bradyrhizobium sp. ORS278]
Length = 100
Score = 49.8 bits (118), Expect = 1e-04, Method: Composition-based stats.
Identities = 19/94 (20%), Positives = 34/94 (36%), Gaps = 7/94 (7%)
Query: 3 KSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIR---GFGSFSVRKRAAR 59
KS LI IA +L+ +DV+ ++ L + + L G + F AR
Sbjct: 7 KSQLIEKIAT-TTELSKRDVKNVMETLTDVGHKELKKNGVFLVPGFAKFVVVKKAAVKAR 65
Query: 60 LARAPLAQKVIS---VEEKMVPFFRAGKNLKERL 90
P + + + + R K K+ +
Sbjct: 66 KGTNPFTGEEMMFKAKPARKIVRARPVKAAKDAV 99
>gi|75762605|ref|ZP_00742453.1| DNA-binding protein HU [Bacillus thuringiensis serovar
israelensis ATCC 35646]
gi|74489901|gb|EAO53269.1| DNA-binding protein HU [Bacillus thuringiensis serovar
israelensis ATCC 35646]
Length = 76
Score = 49.4 bits (117), Expect = 1e-04, Method: Composition-based stats.
Identities = 24/61 (39%), Positives = 41/61 (67%), Gaps = 1/61 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI +A +N +++ ++ +V ++E +T LA G +V++ GFG+F VR+RAAR
Sbjct: 4 MNKTELIKNVA-QNAEISQKEATVVVQTVVESITNTLAAGEKVQLIGFGTFEVRERAART 62
Query: 61 A 61
A
Sbjct: 63 A 63
>gi|193214623|ref|YP_001995822.1| histone family protein DNA-binding protein [Chloroherpeton
thalassium ATCC 35110]
gi|193088100|gb|ACF13375.1| histone family protein DNA-binding protein [Chloroherpeton
thalassium ATCC 35110]
Length = 115
Score = 49.4 bits (117), Expect = 2e-04, Method: Composition-based stats.
Identities = 25/97 (25%), Positives = 43/97 (44%), Gaps = 6/97 (6%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGG---RVEIRGFGSFSVRKRA- 57
+ LI +AK+ K + V + V++ +E +++ + N R+E+RG G F V+
Sbjct: 17 TRRDLIKLVAKRTQK-SEASVAEFVDVTIESLSKLIRNADDELRIELRGLGVFEVKFMKN 75
Query: 58 ARLARAPLAQKVISVEEKM-VPFFRAGKNLKERLNSP 93
R P +I E + FR K +K L
Sbjct: 76 EATVRDPRTGTIIDYEGRRRKVHFRPSKLIKRALQKE 112
>gi|220923813|ref|YP_002499115.1| hypothetical protein Mnod_3912 [Methylobacterium nodulans ORS
2060]
gi|219948420|gb|ACL58812.1| hypothetical protein Mnod_3912 [Methylobacterium nodulans ORS
2060]
Length = 66
Score = 49.4 bits (117), Expect = 2e-04, Method: Composition-based stats.
Identities = 11/51 (21%), Positives = 19/51 (37%)
Query: 40 GGRVEIRGFGSFSVRKRAARLARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
G E VR + R+ R P +++ + V F+ LK +
Sbjct: 5 GREREAVRLRLLVVRDKGKRVGRNPKTGVEVAIAPRRVMVFKPSNVLKAHV 55
>gi|94313664|ref|YP_586873.1| histone-like DNA-binding protein [Cupriavidus metallidurans CH34]
gi|93357516|gb|ABF11604.1| Histone-like DNA-binding protein [Cupriavidus metallidurans CH34]
Length = 230
Score = 49.4 bits (117), Expect = 2e-04, Method: Composition-based stats.
Identities = 20/96 (20%), Positives = 36/96 (37%), Gaps = 9/96 (9%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEI--RGFGSFSVRKRAA- 58
KSSL+ + + +L + V+ ++ L + AL G E G + ++ A
Sbjct: 134 NKSSLVAHLVAQT-QLEAKAVKTVLAHLENTIVSALNKKGAGEFTLPGLLKVTAQQVPAK 192
Query: 59 --RLARAPLAQKVISVEEK---MVPFFRAGKNLKER 89
R + P + K + R K LK+
Sbjct: 193 KKRFGKDPFTGEERWFPAKPASVKVKVRPLKKLKDA 228
>gi|238898294|ref|YP_002923975.1| DNA-binding protein HU-beta, NS1 (HU-1), plays a role in DNA
replication and in rpo translation [Candidatus
Hamiltonella defensa 5AT (Acyrthosiphon pisum)]
gi|229466053|gb|ACQ67827.1| DNA-binding protein HU-beta, NS1 (HU-1), plays a role in DNA
replication and in rpo translation [Candidatus
Hamiltonella defensa 5AT (Acyrthosiphon pisum)]
Length = 75
Score = 49.4 bits (117), Expect = 2e-04, Method: Composition-based stats.
Identities = 25/65 (38%), Positives = 38/65 (58%), Gaps = 1/65 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K+ LI +A + +++ E VN L+ +T+ L GG V + GFG+F V++RAAR
Sbjct: 1 MKKNELITKVAV-DAEISKAKAEAEVNSLINSVTEELKAGGAVALTGFGTFQVKERAART 59
Query: 61 ARAPL 65
R P
Sbjct: 60 GRTPK 64
>gi|161830256|ref|YP_001597572.1| DNA-binding protein BpH2 [Coxiella burnetii RSA 331]
gi|161762123|gb|ABX77765.1| DNA-binding protein BpH2 [Coxiella burnetii RSA 331]
Length = 149
Score = 49.0 bits (116), Expect = 2e-04, Method: Composition-based stats.
Identities = 23/96 (23%), Positives = 38/96 (39%), Gaps = 9/96 (9%)
Query: 3 KSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKR-----A 57
KS L IA L+ ++V +++ L + M + L G E G +
Sbjct: 54 KSQLTTHIAGAT-NLSKKEVSAVLDELADVMHRHLRKGAAGEFTLPGLVKCTVKRKPATK 112
Query: 58 ARLARAPLAQKVIS---VEEKMVPFFRAGKNLKERL 90
AR P ++++ + V RA K LKE +
Sbjct: 113 ARKGINPFTGEMMTFKAKPARNVVKVRALKRLKEMV 148
>gi|188997008|ref|YP_001931259.1| histone family protein DNA-binding protein [Sulfurihydrogenibium
sp. YO3AOP1]
gi|237756708|ref|ZP_04585210.1| integration host factor subunit beta [Sulfurihydrogenibium
yellowstonense SS-5]
gi|188932075|gb|ACD66705.1| histone family protein DNA-binding protein [Sulfurihydrogenibium
sp. YO3AOP1]
gi|237691132|gb|EEP60238.1| integration host factor subunit beta [Sulfurihydrogenibium
yellowstonense SS-5]
Length = 99
Score = 49.0 bits (116), Expect = 2e-04, Method: Composition-based stats.
Identities = 31/92 (33%), Positives = 49/92 (53%), Gaps = 6/92 (6%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K ++ I +K+P+++ + ++ +V+ + E M +ALA G ++EIR GSF V KR
Sbjct: 1 MKKPDIVKYIKEKHPEMDLKSIKDVVDEIFEVMAEALAKGEKIEIRKIGSFRVLKRKK-- 58
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
PL + V F+ GK LK L S
Sbjct: 59 ---PLKGRK-RVSYSKTVHFKPGKVLKRALKS 86
>gi|256821889|ref|YP_003145852.1| histone family protein DNA-binding protein [Kangiella koreensis DSM
16069]
gi|256795428|gb|ACV26084.1| histone family protein DNA-binding protein [Kangiella koreensis DSM
16069]
Length = 113
Score = 49.0 bits (116), Expect = 2e-04, Method: Composition-based stats.
Identities = 15/97 (15%), Positives = 31/97 (31%), Gaps = 9/97 (9%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIR-----GFGSFSVRKR 56
K+ ++ IA + L +DV +++ L + + + E +
Sbjct: 17 TKTQILNEIAAQT-GLTKKDVSAVLDELGVVIERHVKKRAVGEFTLPGLLKISTVKKPAV 75
Query: 57 AARLARAPLAQKVIS---VEEKMVPFFRAGKNLKERL 90
AR P + + R K LK+ +
Sbjct: 76 KARKGINPFTGEETMFKAKPASIAVKVRPLKKLKDMV 112
>gi|254796988|ref|YP_003081825.1| DNA-binding protein HU [Neorickettsia risticii str. Illinois]
gi|254590174|gb|ACT69536.1| DNA-binding protein HU [Neorickettsia risticii str. Illinois]
Length = 98
Score = 49.0 bits (116), Expect = 2e-04, Method: Composition-based stats.
Identities = 20/92 (21%), Positives = 38/92 (41%), Gaps = 6/92 (6%)
Query: 1 MIKS-----SLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRK 55
M K LI +A+ ++ ++ +N L E + ++L + V I G+ SV K
Sbjct: 1 MTKEVVKNVDLINVVAE-GASISKGHAKRAINALYEYIYESLKHRKSVRIPKVGTLSVVK 59
Query: 56 RAARLARAPLAQKVISVEEKMVPFFRAGKNLK 87
+ A P ++++ E F +K
Sbjct: 60 KKATTYCDPKTKQMVRQAETERVKFTISSVVK 91
>gi|15604549|ref|NP_221067.1| integration host factor alpha-subunit (himA) [Rickettsia
prowazekii str. Madrid E]
gi|81554787|sp|Q9ZCL7|HLP_RICPR RecName: Full=Histone-like DNA-binding protein
gi|3861244|emb|CAA15143.1| INTEGRATION HOST FACTOR ALPHA-SUBUNIT (himA) [Rickettsia
prowazekii]
gi|292572345|gb|ADE30260.1| Integration host factor alpha-subunit [Rickettsia prowazekii
Rp22]
Length = 95
Score = 49.0 bits (116), Expect = 2e-04, Method: Composition-based stats.
Identities = 18/92 (19%), Positives = 40/92 (43%), Gaps = 2/92 (2%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
+ K+ + ++ K + E IVN + + + +A ++ ++ FGSF V+++ R
Sbjct: 3 ITKNKISLMLSSKL-GFSNNLCEAIVNTVFSNILE-IAKVQKLTLKNFGSFEVKQKTPRP 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
+ + + K F + LK +N
Sbjct: 61 GINFHTKSPVMIASKKNLRFTPSEKLKALINK 92
>gi|260889031|ref|ZP_05900294.1| DNA-binding protein HU [Leptotrichia hofstadii F0254]
gi|260861091|gb|EEX75591.1| DNA-binding protein HU [Leptotrichia hofstadii F0254]
Length = 70
Score = 49.0 bits (116), Expect = 2e-04, Method: Composition-based stats.
Identities = 20/52 (38%), Positives = 30/52 (57%)
Query: 25 IVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLARAPLAQKVISVEEKM 76
+VN LE + + L NG V+ G+G+F V++RAAR P +K I + K
Sbjct: 1 MVNQFLETVEKTLLNGDSVQFVGWGTFEVKERAARTGINPQTKKEIKIPAKK 52
>gi|257470624|ref|ZP_05634714.1| histone-like DNA-binding phage protein [Fusobacterium ulcerans
ATCC 49185]
gi|317064830|ref|ZP_07929315.1| predicted protein [Fusobacterium ulcerans ATCC 49185]
gi|313690506|gb|EFS27341.1| predicted protein [Fusobacterium ulcerans ATCC 49185]
Length = 90
Score = 49.0 bits (116), Expect = 2e-04, Method: Composition-based stats.
Identities = 19/85 (22%), Positives = 36/85 (42%), Gaps = 1/85 (1%)
Query: 1 MIKSSLIGTIAKKNPK-LNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAAR 59
M K I + K + D +K V L + + G ++ +G G+FS+ KR R
Sbjct: 1 MDKLQFIKKYKENYEKRITNADAKKDVEAFLNLIEDNIVEAGSIKFKGVGTFSLLKRKPR 60
Query: 60 LARAPLAQKVISVEEKMVPFFRAGK 84
+ P ++ +++ + F K
Sbjct: 61 VISNPKTRERMTIYPLPIVKFIPTK 85
>gi|257469615|ref|ZP_05633707.1| histone family protein DNA-binding protein [Fusobacterium
ulcerans ATCC 49185]
Length = 88
Score = 49.0 bits (116), Expect = 2e-04, Method: Composition-based stats.
Identities = 22/88 (25%), Positives = 39/88 (44%), Gaps = 1/88 (1%)
Query: 1 MIKSSLIGTIAK-KNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAAR 59
M K SL + L + K +++ LE + +AL G V+ G F + R +R
Sbjct: 1 MNKRSLAKLYREMSLRTLVLSESIKEIDIFLETLEEALLVDGEVKFTKVGVFEILTRKSR 60
Query: 60 LARAPLAQKVISVEEKMVPFFRAGKNLK 87
+ P+ ++ + + K FR K +K
Sbjct: 61 VIANPVTKEPMMIYPKKTVKFRVSKKMK 88
>gi|317063851|ref|ZP_07928336.1| predicted protein [Fusobacterium ulcerans ATCC 49185]
gi|313689527|gb|EFS26362.1| predicted protein [Fusobacterium ulcerans ATCC 49185]
Length = 92
Score = 48.6 bits (115), Expect = 3e-04, Method: Composition-based stats.
Identities = 22/88 (25%), Positives = 39/88 (44%), Gaps = 1/88 (1%)
Query: 1 MIKSSLIGTIAK-KNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAAR 59
M K SL + L + K +++ LE + +AL G V+ G F + R +R
Sbjct: 5 MNKRSLAKLYREMSLRTLVLSESIKEIDIFLETLEEALLVDGEVKFTKVGVFEILTRKSR 64
Query: 60 LARAPLAQKVISVEEKMVPFFRAGKNLK 87
+ P+ ++ + + K FR K +K
Sbjct: 65 VIANPVTKEPMMIYPKKTVKFRVSKKMK 92
>gi|149177891|ref|ZP_01856489.1| DNA-binding protein HU, putative [Planctomyces maris DSM 8797]
gi|148843231|gb|EDL57596.1| DNA-binding protein HU, putative [Planctomyces maris DSM 8797]
Length = 129
Score = 48.6 bits (115), Expect = 3e-04, Method: Composition-based stats.
Identities = 19/98 (19%), Positives = 41/98 (41%), Gaps = 10/98 (10%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGR--VEIRGFGSFSVRKRAAR 59
K+ ++ +A+ L ++V +++ L +++ L G + G V+++ A
Sbjct: 33 TKTEILNALAE-GSGLTKKEVTAVLDELSSLISKNLGKRGPGVFNMPGLLKIQVQRKPAT 91
Query: 60 LAR---AP-LAQKVISV---EEKMVPFFRAGKNLKERL 90
A P +++ V + V R K LKE +
Sbjct: 92 KATTRPNPFKPGEMMQVAAKPARNVVKVRPLKALKEMV 129
>gi|153208222|ref|ZP_01946632.1| DNA-binding protein BpH2 [Coxiella burnetii 'MSU Goat Q177']
gi|120576127|gb|EAX32751.1| DNA-binding protein BpH2 [Coxiella burnetii 'MSU Goat Q177']
Length = 149
Score = 48.6 bits (115), Expect = 3e-04, Method: Composition-based stats.
Identities = 23/94 (24%), Positives = 38/94 (40%), Gaps = 9/94 (9%)
Query: 3 KSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKR-----A 57
KS L IA+ L+ ++V +++ L + M + L G E G +
Sbjct: 54 KSQLTTHIAEAT-NLSKKEVSAVLDELADVMHRHLRKGAAGEFTLPGLVKCTVKRKPATK 112
Query: 58 ARLARAPLAQKVIS---VEEKMVPFFRAGKNLKE 88
AR P ++++ + V RA K LKE
Sbjct: 113 ARKGINPFTGEMMTFKAKPARNVVKVRALKRLKE 146
>gi|253584313|ref|ZP_04861511.1| predicted protein [Fusobacterium varium ATCC 27725]
gi|251834885|gb|EES63448.1| predicted protein [Fusobacterium varium ATCC 27725]
Length = 92
Score = 48.6 bits (115), Expect = 3e-04, Method: Composition-based stats.
Identities = 19/88 (21%), Positives = 39/88 (44%), Gaps = 1/88 (1%)
Query: 2 IKSSLIGTIAK-KNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
K L K++ + + +N+ + + +AL V+ G+F V KR ++
Sbjct: 5 NKKELAKVYNIVSQGKISRKAALEEINIFTQTLQEALCKYNSVKFINRGTFEVIKRKPKV 64
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKE 88
P ++++ + V FRA KN+ +
Sbjct: 65 VSNPSTRELMKISLGKVVRFRASKNIIK 92
>gi|294666675|ref|ZP_06731912.1| Bacterial DNA-binding protein [Xanthomonas fuscans subsp.
aurantifolii str. ICPB 10535]
gi|292603581|gb|EFF46995.1| Bacterial DNA-binding protein [Xanthomonas fuscans subsp.
aurantifolii str. ICPB 10535]
Length = 257
Score = 48.6 bits (115), Expect = 3e-04, Method: Composition-based stats.
Identities = 19/95 (20%), Positives = 32/95 (33%), Gaps = 9/95 (9%)
Query: 3 KSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGG--RVEIRGFGSFSVRKRAA-- 58
K+ L+ IA+ +L +DV ++ L +L+ G I G + A
Sbjct: 162 KTGLVAHIAEST-QLAPKDVRAVLASLEATAHASLSKKGAGSFTIPGMLKLTTVHVPAKP 220
Query: 59 -RLARAPLAQKVIS---VEEKMVPFFRAGKNLKER 89
R P ++ R K LK+
Sbjct: 221 KRKGINPFTKEEQMFAAKPATTKLKSRPLKKLKDA 255
>gi|329954833|ref|ZP_08295850.1| DNA-binding protein HU [Bacteroides clarus YIT 12056]
gi|328526937|gb|EGF53948.1| DNA-binding protein HU [Bacteroides clarus YIT 12056]
Length = 59
Score = 48.2 bits (114), Expect = 3e-04, Method: Composition-based stats.
Identities = 18/57 (31%), Positives = 36/57 (63%)
Query: 33 MTQALANGGRVEIRGFGSFSVRKRAARLARAPLAQKVISVEEKMVPFFRAGKNLKER 89
MT+ L +G + ++GFG+F V+K+A R++ P ++ + V K+V ++ LK++
Sbjct: 1 MTRQLEDGNTISVQGFGTFEVKKKAERISVNPTTKQRMLVPPKLVLTYKPSTLLKDK 57
>gi|218129617|ref|ZP_03458421.1| hypothetical protein BACEGG_01194 [Bacteroides eggerthii DSM
20697]
gi|255009041|ref|ZP_05281167.1| histone-like DNA-binding protein HU-alpha [Bacteroides fragilis
3_1_12]
gi|217988347|gb|EEC54670.1| hypothetical protein BACEGG_01194 [Bacteroides eggerthii DSM
20697]
Length = 65
Score = 48.2 bits (114), Expect = 4e-04, Method: Composition-based stats.
Identities = 18/65 (27%), Positives = 32/65 (49%)
Query: 30 LEEMTQALANGGRVEIRGFGSFSVRKRAARLARAPLAQKVISVEEKMVPFFRAGKNLKER 89
+E + +++ G V +RGFGSF +++RA + AR I + VP F+ K +
Sbjct: 1 MESVRESMIAGNEVFLRGFGSFIIKQRAEKKARNISKNTTIVIPAHSVPAFKPAKTFLDA 60
Query: 90 LNSPD 94
+
Sbjct: 61 VKEGK 65
>gi|269941613|emb|CBI50019.1| phage DNA-binding protein [Staphylococcus aureus subsp. aureus
TW20]
Length = 109
Score = 48.2 bits (114), Expect = 4e-04, Method: Composition-based stats.
Identities = 18/109 (16%), Positives = 42/109 (38%), Gaps = 13/109 (11%)
Query: 1 MIK---SSLIGTIAKKN----PKLNYQDVEKIVNMLLEEMTQALAN----GGRVEIRGFG 49
M K LI + +K+ ++ +D + + + M +A+ G FG
Sbjct: 1 MTKLAKKDLINELQEKSRVRGLEITKKDAATLFSAFEDTMIEAIHAADEVGYDSFSTNFG 60
Query: 50 SFSVRKRAARLARAPLAQKVI--SVEEKMVPFFRAGKNLKERLNSPDST 96
+F + + + + L + + F+ K++K++L + S
Sbjct: 61 TFKIVEVPEKSGVSRLGGEEKSWTSPAHKTVRFKLNKSVKDKLKAETSK 109
>gi|253582651|ref|ZP_04859872.1| predicted protein [Fusobacterium varium ATCC 27725]
gi|251835521|gb|EES64061.1| predicted protein [Fusobacterium varium ATCC 27725]
Length = 91
Score = 48.2 bits (114), Expect = 4e-04, Method: Composition-based stats.
Identities = 21/89 (23%), Positives = 38/89 (42%), Gaps = 1/89 (1%)
Query: 1 MIKSSLIGTIAKKNP-KLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAAR 59
M K I K + Y + +K V L+ + + N G ++ + G+FSV +R R
Sbjct: 1 MNKLEFIKEYKKCYKKNITYTEAKKDVEAFLDLIENNIMNVGNIKFKEIGAFSVLERKER 60
Query: 60 LARAPLAQKVISVEEKMVPFFRAGKNLKE 88
+ P ++ +++ F K KE
Sbjct: 61 VISNPKTRERMTIYPLTTVKFIPTKVKKE 89
>gi|162454873|ref|YP_001617240.1| histone-like protein [Sorangium cellulosum 'So ce 56']
gi|161165455|emb|CAN96760.1| histone-like protein [Sorangium cellulosum 'So ce 56']
Length = 112
Score = 48.2 bits (114), Expect = 4e-04, Method: Composition-based stats.
Identities = 23/95 (24%), Positives = 38/95 (40%), Gaps = 7/95 (7%)
Query: 3 KSSLIGTIAKKNPK-LNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKR---AA 58
KS LI I + L+ + V+ ++ L+ + L G + GF F V KR A
Sbjct: 17 KSGLIQAITEAAGDELSRKQVKNVLESLITIGHRELKKSGVFTLPGFAKFRVVKRPATKA 76
Query: 59 RLARAPLAQKVIS---VEEKMVPFFRAGKNLKERL 90
R P ++ ++ R K +K+ L
Sbjct: 77 RQGINPFTKQPMTFAAKPASKSVRARPIKAIKDAL 111
>gi|260220519|emb|CBA28137.1| hypothetical protein Csp_A05780 [Curvibacter putative symbiont of
Hydra magnipapillata]
Length = 65
Score = 48.2 bits (114), Expect = 4e-04, Method: Composition-based stats.
Identities = 19/55 (34%), Positives = 29/55 (52%)
Query: 33 MTQALANGGRVEIRGFGSFSVRKRAARLARAPLAQKVISVEEKMVPFFRAGKNLK 87
MT AL G R+E+R FG + R+A + R + + + V F+ GKNL+
Sbjct: 1 MTDALKKGRRIEVRKFGILQTKVRSAVVYRNSRTGEKLQKRQSKVVHFKEGKNLR 55
>gi|257470013|ref|ZP_05634105.1| hypothetical protein FulcA4_11778 [Fusobacterium ulcerans ATCC
49185]
gi|317064238|ref|ZP_07928723.1| predicted protein [Fusobacterium ulcerans ATCC 49185]
gi|313689914|gb|EFS26749.1| predicted protein [Fusobacterium ulcerans ATCC 49185]
Length = 96
Score = 48.2 bits (114), Expect = 4e-04, Method: Composition-based stats.
Identities = 21/88 (23%), Positives = 44/88 (50%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M + I K+N ++++V++ +++ + + +AL +V + +G F R+ +R
Sbjct: 1 MTEGKFIRFYKKRNKCRSHKEVKEKIDLFWDALLKALEEDKKVVFKDWGVFEKREIKSRK 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKE 88
+ P + + K V FRAGK L +
Sbjct: 61 IKVPTLEGARYTKPKEVIKFRAGKGLIK 88
>gi|168704952|ref|ZP_02737229.1| hypothetical protein GobsU_35800 [Gemmata obscuriglobus UQM 2246]
Length = 128
Score = 48.2 bits (114), Expect = 4e-04, Method: Composition-based stats.
Identities = 19/98 (19%), Positives = 40/98 (40%), Gaps = 10/98 (10%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANG--GRVEIRGFGSFSVRKRAAR 59
KS L+ +++K +L+ + VE +++ +++ + L G+ G S+ + A R
Sbjct: 31 TKSQLVAQLSEKT-ELSKKQVEGVLDAIVDAVKAQLGPNGPGKFVFPGLARMSLSQVAER 89
Query: 60 LA----RAPLAQKVISV---EEKMVPFFRAGKNLKERL 90
PL ++ R K++K L
Sbjct: 90 KGGETKINPLNKQPYVTQPRPAYNKVNIRPVKSIKTEL 127
>gi|329963576|ref|ZP_08301055.1| putative DNA-binding protein HU [Bacteroides fluxus YIT 12057]
gi|328528565|gb|EGF55536.1| putative DNA-binding protein HU [Bacteroides fluxus YIT 12057]
Length = 59
Score = 47.8 bits (113), Expect = 4e-04, Method: Composition-based stats.
Identities = 19/57 (33%), Positives = 35/57 (61%)
Query: 33 MTQALANGGRVEIRGFGSFSVRKRAARLARAPLAQKVISVEEKMVPFFRAGKNLKER 89
MT+ L G + I+GFG+F V+K+A R++ P ++ + V K+V ++ LK++
Sbjct: 1 MTRQLEEGNVISIQGFGTFEVKKKAERISVNPTTRQRMLVPPKLVLTYKPSTLLKDK 57
>gi|257470542|ref|ZP_05634632.1| hypothetical protein FulcA4_14446 [Fusobacterium ulcerans ATCC
49185]
gi|317064749|ref|ZP_07929234.1| predicted protein [Fusobacterium ulcerans ATCC 49185]
gi|313690425|gb|EFS27260.1| predicted protein [Fusobacterium ulcerans ATCC 49185]
Length = 96
Score = 47.8 bits (113), Expect = 4e-04, Method: Composition-based stats.
Identities = 22/96 (22%), Positives = 42/96 (43%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M + + K+N N + V++ +++ + +AL +V + +G+F R+ R
Sbjct: 1 MTEGEFLRFYKKRNNSKNLKVVKEKIDLFWNVLLKALEEDKKVIFKNWGAFEKREMKVRK 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDST 96
P +K ++ K FRAGK+ E N
Sbjct: 61 VLVPTWEKAQYIKPKESIKFRAGKSFIEIANGDTDE 96
>gi|294626279|ref|ZP_06704882.1| bacterial DNA-binding protein [Xanthomonas fuscans subsp.
aurantifolii str. ICPB 11122]
gi|292599425|gb|EFF43559.1| bacterial DNA-binding protein [Xanthomonas fuscans subsp.
aurantifolii str. ICPB 11122]
Length = 266
Score = 47.8 bits (113), Expect = 4e-04, Method: Composition-based stats.
Identities = 20/95 (21%), Positives = 32/95 (33%), Gaps = 9/95 (9%)
Query: 3 KSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGG--RVEIRGFGSFSVRKRAA-- 58
K+ L+ IA+ +L +DV ++ L +L+ G I G + A
Sbjct: 171 KTGLVAHIAEST-QLAPKDVRAVLASLEATAHASLSKKGVGSFTIPGMLKLTTVHVPAKP 229
Query: 59 -RLARAPLAQKVIS---VEEKMVPFFRAGKNLKER 89
R P +K R K LK+
Sbjct: 230 KRKGINPFTKKEQMFAAKPATTKLKSRPLKKLKDA 264
>gi|171913744|ref|ZP_02929214.1| DNA-binding protein HU, putative [Verrucomicrobium spinosum DSM
4136]
Length = 109
Score = 47.8 bits (113), Expect = 4e-04, Method: Composition-based stats.
Identities = 17/96 (17%), Positives = 35/96 (36%), Gaps = 9/96 (9%)
Query: 3 KSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKR-----A 57
K+ ++ I + +L+ + V +++ L E ++ L E G ++
Sbjct: 14 KTQILEQITQDT-ELSRKQVSAVLDSLTEIISSHLKKNSVGEFVLPGLLQIKTVRKPAVK 72
Query: 58 ARLARAPLAQKVIS---VEEKMVPFFRAGKNLKERL 90
AR P ++ V R K LK+ +
Sbjct: 73 ARKGINPFTKEPTVFKAKPASTVVKVRPLKKLKDMV 108
>gi|58584319|ref|YP_197892.1| nucleoid DNA-binding protein [Wolbachia endosymbiont strain TRS
of Brugia malayi]
gi|58418635|gb|AAW70650.1| Bacterial nucleoid DNA-binding protein, HupA family [Wolbachia
endosymbiont strain TRS of Brugia malayi]
Length = 92
Score = 47.8 bits (113), Expect = 5e-04, Method: Composition-based stats.
Identities = 30/91 (32%), Positives = 49/91 (53%), Gaps = 1/91 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
KS++I +AK++P L+ + IVN E ++ L + RVEIRGFGSFS+R +
Sbjct: 3 TKSNIIMKVAKRHPLLDRIVIAAIVNRFFEILSSTLEHHNRVEIRGFGSFSIRSYNLKET 62
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
L + + + +FR+ K L + +N
Sbjct: 63 SH-LMLQKFAKNQYFKTYFRSSKKLSDLINE 92
>gi|78048627|ref|YP_364802.1| DNA-binding protein [Xanthomonas campestris pv. vesicatoria str.
85-10]
gi|78037057|emb|CAJ24798.1| Bacterial DNA-binding protein [Xanthomonas campestris pv.
vesicatoria str. 85-10]
Length = 256
Score = 47.8 bits (113), Expect = 5e-04, Method: Composition-based stats.
Identities = 19/95 (20%), Positives = 32/95 (33%), Gaps = 9/95 (9%)
Query: 3 KSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGG--RVEIRGFGSFSVRKRAA-- 58
K+ L+ IA+ +L +DV ++ L +L+ G I G + A
Sbjct: 161 KTGLVAHIAEST-QLAPKDVRAVLASLEATAHASLSKKGVGSFTIPGMLKLTTVHVPAKP 219
Query: 59 -RLARAPLAQKVIS---VEEKMVPFFRAGKNLKER 89
R P ++ R K LK+
Sbjct: 220 KRKGINPFTKEEQMFAAKPATTKLKSRPLKKLKDA 254
>gi|218131132|ref|ZP_03459936.1| hypothetical protein BACEGG_02737 [Bacteroides eggerthii DSM
20697]
gi|217986652|gb|EEC52986.1| hypothetical protein BACEGG_02737 [Bacteroides eggerthii DSM
20697]
Length = 59
Score = 47.8 bits (113), Expect = 5e-04, Method: Composition-based stats.
Identities = 19/57 (33%), Positives = 35/57 (61%)
Query: 33 MTQALANGGRVEIRGFGSFSVRKRAARLARAPLAQKVISVEEKMVPFFRAGKNLKER 89
MT+ L G + I+GFG+F V+K+A R++ P ++ + V K+V ++ LK++
Sbjct: 1 MTRQLEEGNVISIQGFGTFEVKKKAERISVNPTTKQRMLVPPKLVLTYKPSTLLKDK 57
>gi|167763122|ref|ZP_02435249.1| hypothetical protein BACSTE_01491 [Bacteroides stercoris ATCC
43183]
gi|167699462|gb|EDS16041.1| hypothetical protein BACSTE_01491 [Bacteroides stercoris ATCC
43183]
Length = 59
Score = 47.8 bits (113), Expect = 5e-04, Method: Composition-based stats.
Identities = 19/57 (33%), Positives = 35/57 (61%)
Query: 33 MTQALANGGRVEIRGFGSFSVRKRAARLARAPLAQKVISVEEKMVPFFRAGKNLKER 89
MT+ L G + I+GFG+F V+K+A R++ P ++ + V K+V ++ LK++
Sbjct: 1 MTRQLEEGNMISIQGFGTFEVKKKAERISVNPTTKQRMLVPPKLVLTYKPSTLLKDK 57
>gi|289548471|ref|YP_003473459.1| histone family protein DNA-binding protein [Thermocrinis albus
DSM 14484]
gi|289182088|gb|ADC89332.1| histone family protein DNA-binding protein [Thermocrinis albus
DSM 14484]
Length = 95
Score = 47.5 bits (112), Expect = 6e-04, Method: Composition-based stats.
Identities = 26/91 (28%), Positives = 41/91 (45%), Gaps = 6/91 (6%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M + ++ + NP + V K +N++LEE+ AL G V I+G G+F + + A R
Sbjct: 1 MTRRRVVEKFLQNNPGFSPTLVGKALNLMLEEIICALEKEGVVRIQGLGTFRLDRTAVRK 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R KV + F+ K L L
Sbjct: 61 LR----GKVY--PSRKTVRFKPSKLLLSALK 85
>gi|160872720|ref|ZP_02062852.1| DNA-binding protein BpH2 [Rickettsiella grylli]
gi|159121519|gb|EDP46857.1| DNA-binding protein BpH2 [Rickettsiella grylli]
Length = 129
Score = 47.5 bits (112), Expect = 6e-04, Method: Composition-based stats.
Identities = 16/95 (16%), Positives = 34/95 (35%), Gaps = 7/95 (7%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKR---AA 58
K+ L+ + + +L + + +++ L M + G G +V K+ A
Sbjct: 36 TKTELLQCLVEST-ELPKKKIAEVLETLQMIMHAHVKAGCAFAHPGLYKITVVKKPATKA 94
Query: 59 RLARAPLAQKVIS---VEEKMVPFFRAGKNLKERL 90
R P + + + V + K LK +
Sbjct: 95 RKGINPFTGEPTTFKAKPARKVVKIKPLKKLKAAV 129
>gi|212693203|ref|ZP_03301331.1| hypothetical protein BACDOR_02713 [Bacteroides dorei DSM 17855]
gi|212664308|gb|EEB24880.1| hypothetical protein BACDOR_02713 [Bacteroides dorei DSM 17855]
Length = 59
Score = 47.5 bits (112), Expect = 6e-04, Method: Composition-based stats.
Identities = 20/57 (35%), Positives = 35/57 (61%)
Query: 33 MTQALANGGRVEIRGFGSFSVRKRAARLARAPLAQKVISVEEKMVPFFRAGKNLKER 89
MTQ L +G + I+GFG+F V+K+ R++ P Q+ + + K+V ++ LKE+
Sbjct: 1 MTQELQDGNNIVIQGFGTFEVKKKLERISINPATQQRMLIPPKLVLTYKPSVTLKEK 57
>gi|90020558|ref|YP_526385.1| DNA-binding protein HU [Saccharophagus degradans 2-40]
gi|89950158|gb|ABD80173.1| histone-like DNA-binding protein [Saccharophagus degradans 2-40]
Length = 135
Score = 47.5 bits (112), Expect = 6e-04, Method: Composition-based stats.
Identities = 18/94 (19%), Positives = 35/94 (37%), Gaps = 9/94 (9%)
Query: 3 KSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRK-----RA 57
K+ ++ IA+ +L + V+ +++ L + + + E G F + R
Sbjct: 40 KTQMLTQIAENT-ELTKKQVQSVLDELTDIIEGHVKKRACGEFVMPGLFKILTVKKPARK 98
Query: 58 ARLARAPLAQKVIS---VEEKMVPFFRAGKNLKE 88
AR P + + + R K LKE
Sbjct: 99 ARKGINPFTGEETTFAAKPASIQVKIRPLKKLKE 132
>gi|331007234|ref|ZP_08330441.1| putative DNA-binding protein HU [gamma proteobacterium IMCC1989]
gi|330418950|gb|EGG93409.1| putative DNA-binding protein HU [gamma proteobacterium IMCC1989]
Length = 121
Score = 47.5 bits (112), Expect = 6e-04, Method: Composition-based stats.
Identities = 17/95 (17%), Positives = 32/95 (33%), Gaps = 9/95 (9%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIR-----GFGSFSVRKR 56
K+ ++ IA+ +L + V+ +++ L + M + E + R
Sbjct: 25 TKTQMVAQIAENT-ELTKKQVQSVLDELSDLMEGHIKKRACGEFVLPGLMKIVTVKKPAR 83
Query: 57 AARLARAPLAQKVIS---VEEKMVPFFRAGKNLKE 88
AR P + + R K LKE
Sbjct: 84 KARKGINPFNGEETTFAAKPASTAVKIRPLKKLKE 118
>gi|325297734|ref|YP_004257651.1| histone family protein DNA-binding protein [Bacteroides
salanitronis DSM 18170]
gi|324317287|gb|ADY35178.1| histone family protein DNA-binding protein [Bacteroides
salanitronis DSM 18170]
Length = 317
Score = 47.5 bits (112), Expect = 7e-04, Method: Composition-based stats.
Identities = 17/95 (17%), Positives = 40/95 (42%), Gaps = 5/95 (5%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
+ LI +A ++ ++ + D EK + +ALA V+++G G+F +
Sbjct: 5 ITLQELIELLA-QHHQIEHTDAEKFGRTFFALIGEALATDKYVKVKGLGTFKLIDADVCE 63
Query: 61 ARAPLA--QKVISVEEKMVPFFRAGKNLKERLNSP 93
++ I ++ + F +++ +N P
Sbjct: 64 --NMGTDAEERIGMQNHLRISFTPDATIRDAVNKP 96
>gi|224024933|ref|ZP_03643299.1| hypothetical protein BACCOPRO_01664 [Bacteroides coprophilus DSM
18228]
gi|224018169|gb|EEF76167.1| hypothetical protein BACCOPRO_01664 [Bacteroides coprophilus DSM
18228]
Length = 385
Score = 47.1 bits (111), Expect = 7e-04, Method: Composition-based stats.
Identities = 17/88 (19%), Positives = 35/88 (39%), Gaps = 17/88 (19%)
Query: 6 LIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLARAPL 65
L +A ++ ++ D E V + + +AL V+++G G+F
Sbjct: 10 LAEQLASRH-QMEQADAEAFVQTFVALIEEALQQEKYVKVKGLGTF-------------- 54
Query: 66 AQKVISVEEKMVPFFRAGKNLKERLNSP 93
K+I + F +L++ +N P
Sbjct: 55 --KLIEMSGHNRVSFVPEASLRDLINKP 80
>gi|57867550|ref|YP_189186.1| DNA-binding protein HU [Staphylococcus epidermidis RP62A]
gi|57638208|gb|AAW54996.1| DNA-binding protein HU, putative [Staphylococcus epidermidis RP62A
phage SP-beta]
Length = 109
Score = 47.1 bits (111), Expect = 8e-04, Method: Composition-based stats.
Identities = 16/109 (14%), Positives = 42/109 (38%), Gaps = 13/109 (11%)
Query: 1 MIK---SSLIGTIAK----KNPKLNYQDVEKIVNMLLEEMTQALAN----GGRVEIRGFG 49
M K LI + + + ++ +D + + + + +A+ G FG
Sbjct: 1 MTKLAKKDLINELQESARVRGLEITKKDAATLFSAFEDTVIEAIHAADEVGYDSFSTNFG 60
Query: 50 SFSVRKRAARLARAPLAQKVI--SVEEKMVPFFRAGKNLKERLNSPDST 96
+F + + + + + L + + F+ K++K++L + S
Sbjct: 61 TFKIVEVSEKSGVSRLGGEEKFWTSPAHKTVRFKLNKSVKDKLKAETSK 109
>gi|257468699|ref|ZP_05632793.1| hypothetical protein FulcA4_05115 [Fusobacterium ulcerans ATCC
49185]
gi|317062954|ref|ZP_07927439.1| predicted protein [Fusobacterium ulcerans ATCC 49185]
gi|313688630|gb|EFS25465.1| predicted protein [Fusobacterium ulcerans ATCC 49185]
Length = 96
Score = 46.7 bits (110), Expect = 0.001, Method: Composition-based stats.
Identities = 20/96 (20%), Positives = 44/96 (45%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M + I K+N +++ V++ +++ + +AL +V ++ +G F R+ +R
Sbjct: 1 MTEGEFIKFYKKRNKIKSHRLVKEKIDLFWNALFKALDEDKKVVLQRWGVFEKREMKSRK 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDST 96
+ P+ ++ + K FRAG N + N
Sbjct: 61 IKVPMWEEPTYTKPKESIKFRAGLNFVKIANGDTDE 96
>gi|257470065|ref|ZP_05634157.1| hypothetical protein FulcA4_12040 [Fusobacterium ulcerans ATCC
49185]
Length = 90
Score = 46.7 bits (110), Expect = 0.001, Method: Composition-based stats.
Identities = 16/73 (21%), Positives = 41/73 (56%)
Query: 16 KLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLARAPLAQKVISVEEK 75
+++ + ++ ++ +E + +A+ G+++ + G+F + KR +R+ P+ ++ + + K
Sbjct: 17 EISLKKAQEEIDEFIEVIQEAILIDGKIKFKEIGTFEILKRHSRIIANPVTKEPMKIYPK 76
Query: 76 MVPFFRAGKNLKE 88
FR KNLK
Sbjct: 77 KTIKFRVSKNLKN 89
>gi|224540005|ref|ZP_03680544.1| hypothetical protein BACCELL_04917 [Bacteroides cellulosilyticus
DSM 14838]
gi|224518372|gb|EEF87477.1| hypothetical protein BACCELL_04917 [Bacteroides cellulosilyticus
DSM 14838]
Length = 59
Score = 46.7 bits (110), Expect = 0.001, Method: Composition-based stats.
Identities = 19/57 (33%), Positives = 32/57 (56%)
Query: 33 MTQALANGGRVEIRGFGSFSVRKRAARLARAPLAQKVISVEEKMVPFFRAGKNLKER 89
MTQ L G + ++ FG+F V+K+A R+ P + + V K+V +R LK++
Sbjct: 1 MTQQLQEGNAISVQSFGTFEVKKKAERITINPTTKLRMLVPPKLVLTYRPSTALKDK 57
>gi|292492068|ref|YP_003527507.1| histone family protein DNA-binding protein [Nitrosococcus
halophilus Nc4]
gi|291580663|gb|ADE15120.1| histone family protein DNA-binding protein [Nitrosococcus
halophilus Nc4]
Length = 147
Score = 46.7 bits (110), Expect = 0.001, Method: Composition-based stats.
Identities = 23/100 (23%), Positives = 41/100 (41%), Gaps = 11/100 (11%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANG--GRVEIRGFGSFSVRKRAA 58
M K+ L TIA+ L+ +DV + + L + + + G + G + K+ A
Sbjct: 48 MTKTQLYATIAENT-NLSKKDVVAVFDELNTLINRHIKKRSAGVFTLPGLLKITTVKKPA 106
Query: 59 RLAR----AP-LAQKVISV---EEKMVPFFRAGKNLKERL 90
R A+ P + + V + V R K LK+ +
Sbjct: 107 RKAQKNVPNPFKPGETMDVAAKPARTVVKVRPLKKLKDMV 146
>gi|253582644|ref|ZP_04859865.1| predicted protein [Fusobacterium varium ATCC 27725]
gi|251835514|gb|EES64054.1| predicted protein [Fusobacterium varium ATCC 27725]
Length = 77
Score = 46.7 bits (110), Expect = 0.001, Method: Composition-based stats.
Identities = 14/70 (20%), Positives = 34/70 (48%)
Query: 17 LNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLARAPLAQKVISVEEKM 76
+N ++ K +++ + + +AL G ++ G+F V K+ R P ++++ + +
Sbjct: 6 INIKEALKEIDIFTKTVEEALLIKGYIKFIRRGTFMVLKKKPRTVSNPSTKELMRIYPRK 65
Query: 77 VPFFRAGKNL 86
F+ K L
Sbjct: 66 TVKFKISKKL 75
>gi|317064289|ref|ZP_07928774.1| predicted protein [Fusobacterium ulcerans ATCC 49185]
gi|313689965|gb|EFS26800.1| predicted protein [Fusobacterium ulcerans ATCC 49185]
Length = 92
Score = 46.7 bits (110), Expect = 0.001, Method: Composition-based stats.
Identities = 16/73 (21%), Positives = 41/73 (56%)
Query: 16 KLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLARAPLAQKVISVEEK 75
+++ + ++ ++ +E + +A+ G+++ + G+F + KR +R+ P+ ++ + + K
Sbjct: 19 EISLKKAQEEIDEFIEVIQEAILIDGKIKFKEIGTFEILKRHSRIIANPVTKEPMKIYPK 78
Query: 76 MVPFFRAGKNLKE 88
FR KNLK
Sbjct: 79 KTIKFRVSKNLKN 91
>gi|241589931|ref|YP_002979956.1| histone family protein DNA-binding protein [Ralstonia pickettii
12D]
gi|240868643|gb|ACS66302.1| histone family protein DNA-binding protein [Ralstonia pickettii
12D]
Length = 135
Score = 46.7 bits (110), Expect = 0.001, Method: Composition-based stats.
Identities = 18/96 (18%), Positives = 35/96 (36%), Gaps = 9/96 (9%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRK-----R 56
K+SL+ +A++ + + V+ ++ L + AL G E G F V
Sbjct: 39 TKASLVSHLAEQ-AGVEAKAVKAVLQHLESTILGALHKKGAGEFSLPGLFKVTSVKVPAT 97
Query: 57 AARLARAPLAQKVI---SVEEKMVPFFRAGKNLKER 89
R + P + + + R K +K+
Sbjct: 98 KRRFGKNPFTGQEQWFEAKPASVRVKVRPLKKVKDA 133
>gi|194291906|ref|YP_002007813.1| histone-like DNA-binding protein [Cupriavidus taiwanensis LMG
19424]
gi|193225810|emb|CAQ71756.1| putative Histone-like DNA-binding protein [Cupriavidus taiwanensis
LMG 19424]
Length = 196
Score = 46.7 bits (110), Expect = 0.001, Method: Composition-based stats.
Identities = 20/96 (20%), Positives = 34/96 (35%), Gaps = 9/96 (9%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKR----- 56
KSSL+ + + +L + V+ ++ L + AL G E G V +
Sbjct: 100 NKSSLVAHLVAQT-QLEAKAVKTVLAHLENTIVGALNKKGAGEFTLPGLLKVTAQQVPAK 158
Query: 57 AARLARAPLAQKVISVEEK---MVPFFRAGKNLKER 89
R + P + K + R K LK+
Sbjct: 159 KKRFGKDPFTGEERWFPAKPASVKVKVRPLKKLKDA 194
>gi|257470392|ref|ZP_05634483.1| hypothetical protein FulcA4_13692 [Fusobacterium ulcerans ATCC
49185]
Length = 93
Score = 46.3 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 19/90 (21%), Positives = 41/90 (45%), Gaps = 1/90 (1%)
Query: 1 MIKSSLIGTIAK-KNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAAR 59
M K N K++ K + L+ + +AL G+++ G+F + +R R
Sbjct: 1 MNKRRFAKVYRDLSNEKIDINRALKEIENFLKTIEEALIADGKIKFIEKGTFEILERKPR 60
Query: 60 LARAPLAQKVISVEEKMVPFFRAGKNLKER 89
+ PL ++++++ K F + K L ++
Sbjct: 61 IISNPLTRELMTIYPKKSVKFTSSKKLNKK 90
>gi|253582550|ref|ZP_04859771.1| predicted protein [Fusobacterium varium ATCC 27725]
gi|251835420|gb|EES63960.1| predicted protein [Fusobacterium varium ATCC 27725]
Length = 92
Score = 46.3 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 19/85 (22%), Positives = 37/85 (43%), Gaps = 1/85 (1%)
Query: 2 IKSSLIGTIAKKNPK-LNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
K + N ++ K + + LE + +AL G+V+ G+F + +R R+
Sbjct: 5 NKKGFAKIYKEMNKNNIDINQATKEIEIFLETLEEALVKYGKVKFVERGTFEIMERKPRI 64
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKN 85
P ++++ + K FR KN
Sbjct: 65 ISNPSTRELMKIYPKKTVKFRVSKN 89
>gi|300691926|ref|YP_003752921.1| histone-like bacterial DNA-binding protein [Ralstonia solanacearum
PSI07]
gi|299078986|emb|CBJ51646.2| putative histone-like bacterial DNA-binding protein [Ralstonia
solanacearum PSI07]
Length = 131
Score = 46.3 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 19/96 (19%), Positives = 37/96 (38%), Gaps = 9/96 (9%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRK-----R 56
K+SL+ +A++ +L+ + V+ ++ L + AL G E G F V
Sbjct: 33 TKASLVNHLAEQ-AELDAKSVKAVLLHLENTILGALHKKGAGEFTLPGLFKVTSVKVPAT 91
Query: 57 AARLARAPLAQKVI---SVEEKMVPFFRAGKNLKER 89
R + P + + + R K +K+
Sbjct: 92 KRRFGKNPFTGQEQWFEAKPATVRVKVRPLKKVKDA 127
>gi|320101860|ref|YP_004177451.1| histone family protein DNA-binding protein [Isosphaera pallida ATCC
43644]
gi|319749142|gb|ADV60902.1| histone family protein DNA-binding protein [Isosphaera pallida ATCC
43644]
Length = 130
Score = 46.3 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 19/97 (19%), Positives = 37/97 (38%), Gaps = 9/97 (9%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQAL--ANGGRVEIRGFGSFSVRKRAA- 58
K+ + G +A+ +L + V + L + + + L +I SV R A
Sbjct: 34 TKNEVFGKLAEST-QLTKKQVAAVFEQLEKMIIEELGPKGSQVFQIPNLVKLSVTVRPAT 92
Query: 59 --RLARAPLAQKVISV---EEKMVPFFRAGKNLKERL 90
++ R P + + + + R K LKE +
Sbjct: 93 AEKMGRNPATGEPMKIAAKPARKAVKVRVLKMLKEAV 129
>gi|189465618|ref|ZP_03014403.1| hypothetical protein BACINT_01976 [Bacteroides intestinalis DSM
17393]
gi|189437892|gb|EDV06877.1| hypothetical protein BACINT_01976 [Bacteroides intestinalis DSM
17393]
Length = 59
Score = 46.3 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 20/57 (35%), Positives = 32/57 (56%)
Query: 33 MTQALANGGRVEIRGFGSFSVRKRAARLARAPLAQKVISVEEKMVPFFRAGKNLKER 89
MTQ L G V ++ FG+F V+K+A R+ P + + V K+V +R LK++
Sbjct: 1 MTQQLQEGNIVSVQSFGTFEVKKKAERITINPTTKLRMLVPPKLVLTYRPSTTLKDK 57
>gi|325989777|ref|YP_004249476.1| Histone-like DNA-binding superfamily protein HimA [Mycoplasma
suis KI3806]
gi|323574862|emb|CBZ40522.1| Histone-like DNA-binding superfamily protein HimA/HU/Integration
host factor (himA/hup_2) [Mycoplasma suis]
Length = 92
Score = 46.3 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 12/74 (16%), Positives = 25/74 (33%)
Query: 16 KLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLARAPLAQKVISVEEK 75
L ++ ++ + G V + G + +R R + ++ + +
Sbjct: 8 GLTKDQIDSVLKAYQAITIAEMKEQGEVNVLEIGKIKISRRPERKGVNFMTKEPMVIPAA 67
Query: 76 MVPFFRAGKNLKER 89
V F K LKE
Sbjct: 68 NVAKFSFSKKLKEA 81
>gi|56550655|ref|YP_161721.1| hypothetical protein RMe0099 [Cupriavidus metallidurans CH34]
gi|94152598|ref|YP_582000.1| histone-like DNA-binding protein [Cupriavidus metallidurans CH34]
gi|56410361|emb|CAI30243.1| hypothetical protein RMe0099 [Cupriavidus metallidurans CH34]
gi|93358964|gb|ABF13050.1| Histone-like DNA-binding protein [Cupriavidus metallidurans CH34]
Length = 140
Score = 45.9 bits (108), Expect = 0.002, Method: Composition-based stats.
Identities = 20/96 (20%), Positives = 34/96 (35%), Gaps = 9/96 (9%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRK-----R 56
KSSL+ + + +L+ + V+ ++ L + A+ G E G F V
Sbjct: 44 NKSSLLAHLVTQT-ELDKKTVQTVLAHLENTIASAIHKKGAGEFTFPGLFKVSAIQVPAT 102
Query: 57 AARLARAPLAQKV---ISVEEKMVPFFRAGKNLKER 89
R R P + + R K LK+
Sbjct: 103 KKRFGRNPFTGADQWFAAKPASVKVKVRPLKKLKDA 138
>gi|317064577|ref|ZP_07929062.1| predicted protein [Fusobacterium ulcerans ATCC 49185]
gi|313690253|gb|EFS27088.1| predicted protein [Fusobacterium ulcerans ATCC 49185]
Length = 100
Score = 45.9 bits (108), Expect = 0.002, Method: Composition-based stats.
Identities = 24/96 (25%), Positives = 42/96 (43%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M + I +KKN N + +K V ++ E + +A+ G + + G F ++ R
Sbjct: 3 MKEIEFIRLYSKKNKSKNLKVAKKKVRLIWESIYEAIDTEGSLTLLNMGMFEKKELRPRK 62
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDST 96
P+ K+ + K V FRAGK + +N
Sbjct: 63 IYIPVNGKMSVSKPKTVVKFRAGKGWVKMVNESGEN 98
>gi|330870883|gb|EGH05592.1| hypothetical protein PSYAE_27258 [Pseudomonas syringae pv.
aesculi str. 0893_23]
Length = 46
Score = 45.9 bits (108), Expect = 0.002, Method: Composition-based stats.
Identities = 14/45 (31%), Positives = 19/45 (42%)
Query: 48 FGSFSVRKRAARLARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
G V +R AR R P I + K V F + K L + +N
Sbjct: 1 IGKLKVAERPARTGRNPSTGAAIEIAAKKVVKFVSAKVLNDAINK 45
>gi|297519827|ref|ZP_06938213.1| transcriptional regulator HU subunit beta [Escherichia coli OP50]
Length = 29
Score = 45.9 bits (108), Expect = 0.002, Method: Composition-based stats.
Identities = 13/29 (44%), Positives = 17/29 (58%)
Query: 63 APLAQKVISVEEKMVPFFRAGKNLKERLN 91
P K I++ VP FRAGK LK+ +N
Sbjct: 1 NPQTGKEITIAAAKVPSFRAGKALKDAVN 29
>gi|254362481|ref|ZP_04978589.1| DNA-binding protein HU [Mannheimia haemolytica PHL213]
gi|153094073|gb|EDN74985.1| DNA-binding protein HU [Mannheimia haemolytica PHL213]
Length = 37
Score = 45.5 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 13/37 (35%), Positives = 19/37 (51%)
Query: 55 KRAARLARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
+R AR R P + I + VP F +GK LK+ +
Sbjct: 1 ERKARTGRNPKTGEEIKIAAAKVPAFVSGKALKDLVK 37
>gi|51473887|ref|YP_067644.1| integration host factor alpha subunit [Rickettsia typhi str.
Wilmington]
gi|81636348|sp|Q9AKA7|HLP_RICTY RecName: Full=Histone-like DNA-binding protein
gi|13235499|emb|CAC33761.1| Integration host factor alpha-subunit [Rickettsia typhi]
gi|51460199|gb|AAU04162.1| integration host factor alpha subunit [Rickettsia typhi str.
Wilmington]
Length = 95
Score = 45.5 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 18/92 (19%), Positives = 40/92 (43%), Gaps = 2/92 (2%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
+ K+ + + K + E+IVN + + + +A ++ ++ FGSF V+++ R
Sbjct: 3 ITKNKISLMLNSKL-GFSNNLCEEIVNTVFSNILE-IAKVQKLTLKNFGSFEVKQKKQRP 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
+ + + K F + LK +N
Sbjct: 61 GINFHTKSPVMIASKKNLRFSPSEKLKALINK 92
>gi|257470368|ref|ZP_05634459.1| hypothetical protein FulcA4_13572 [Fusobacterium ulcerans ATCC
49185]
Length = 98
Score = 45.5 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 24/96 (25%), Positives = 42/96 (43%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M + I +KKN N + +K V ++ E + +A+ G + + G F ++ R
Sbjct: 1 MKEIEFIRLYSKKNKSKNLKVAKKKVRLIWESIYEAIDTEGSLTLLNMGMFEKKELRPRK 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDST 96
P+ K+ + K V FRAGK + +N
Sbjct: 61 IYIPVNGKMSVSKPKTVVKFRAGKGWVKMVNESGEN 96
>gi|162456561|ref|YP_001618928.1| histone-like protein [Sorangium cellulosum 'So ce 56']
gi|161167143|emb|CAN98448.1| histone-like protein [Sorangium cellulosum 'So ce 56']
Length = 111
Score = 45.5 bits (107), Expect = 0.003, Method: Composition-based stats.
Identities = 22/95 (23%), Positives = 40/95 (42%), Gaps = 7/95 (7%)
Query: 3 KSSLIGTIAKKNPK-LNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKR---AA 58
KS+LI + + N ++ + V+ I+ L + + L G + GF F V K+ A
Sbjct: 16 KSALINAVVEANENEISRKQVKAILESLTDIAYKELKKNGIFTMPGFAKFRVVKKPATKA 75
Query: 59 RLARAPLAQKVIS---VEEKMVPFFRAGKNLKERL 90
R P ++ ++ R K +K+ L
Sbjct: 76 REGINPFTKQPMTFAAKPASKSVRARPIKAIKDSL 110
>gi|94501846|ref|ZP_01308357.1| DNA-binding protein HU, putative [Oceanobacter sp. RED65]
gi|94425979|gb|EAT10976.1| DNA-binding protein HU, putative [Oceanobacter sp. RED65]
Length = 139
Score = 45.1 bits (106), Expect = 0.003, Method: Composition-based stats.
Identities = 16/95 (16%), Positives = 35/95 (36%), Gaps = 9/95 (9%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRK-----R 56
K+ ++ IA+ +L + V+ +++ L + + + + E G ++ +
Sbjct: 43 NKTQILTEIAENT-ELTKKQVQAVLDNLGDVIERHVKKRAVGEFVLPGLLKIQAVKKPAK 101
Query: 57 AARLARAPLAQKVIS---VEEKMVPFFRAGKNLKE 88
AR P + + R K LKE
Sbjct: 102 KARKGINPFTGEETVFKAKPASIAVKIRPLKKLKE 136
>gi|66391376|ref|YP_238606.1| ORF129 [Staphylococcus phage Twort]
gi|62637306|gb|AAX92417.1| ORF129 [Staphylococcus phage Twort]
Length = 98
Score = 45.1 bits (106), Expect = 0.003, Method: Composition-based stats.
Identities = 19/96 (19%), Positives = 39/96 (40%), Gaps = 2/96 (2%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANG-GRVEIRGFGSFSVRKRAARL 60
+ ++ I+ K D+E+I+N E + + L G +++ F V R +
Sbjct: 3 NRKDIVRRISDKTGYYMQ-DIEEILNAEAESIYELLKEGNDKIKYHKFYQIEVETREPKE 61
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDST 96
A L ++ + EK FR L++ + +
Sbjct: 62 AWDGLNKRYFQIPEKKYIKFRPMSELEKVIKEINEE 97
>gi|330886055|gb|EGH19956.1| hypothetical protein PSYMO_00050 [Pseudomonas syringae pv. mori
str. 301020]
Length = 38
Score = 45.1 bits (106), Expect = 0.003, Method: Composition-based stats.
Identities = 10/34 (29%), Positives = 14/34 (41%)
Query: 59 RLARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R R P I + K V F + K L + +N
Sbjct: 1 RTGRNPSTGAAIEIAAKKVVKFVSAKVLNDAINK 34
>gi|163857634|ref|YP_001631932.1| histone-like protein [Bordetella petrii DSM 12804]
gi|163261362|emb|CAP43664.1| histone-like protein [Bordetella petrii]
Length = 142
Score = 44.8 bits (105), Expect = 0.004, Method: Composition-based stats.
Identities = 18/96 (18%), Positives = 34/96 (35%), Gaps = 9/96 (9%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRA---- 57
KS LI + ++ + + V+ ++ L + ++ G E G F V +
Sbjct: 46 NKSQLIAHLVEQT-GVEAKSVKAVLAGLEGAVLGSVDKKGAGEFSLPGLFKVTVQKVPAK 104
Query: 58 -ARLARAPLAQKVISVEEK---MVPFFRAGKNLKER 89
R + P + K + R K LK+
Sbjct: 105 AKRFGKDPFTGEERWFPAKPASVKVKVRPLKKLKDA 140
>gi|330952800|gb|EGH53060.1| hypothetical protein PSYCIT7_15803 [Pseudomonas syringae Cit 7]
Length = 43
Score = 44.8 bits (105), Expect = 0.004, Method: Composition-based stats.
Identities = 13/43 (30%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRV 43
M KS LI IA + + + ++ ++E +T AL G V
Sbjct: 1 MNKSELIDAIAA-SADIPKAAAGRALDAVIESVTGALKAGDSV 42
>gi|241762720|ref|ZP_04760784.1| hypothetical protein AcdelDRAFT_0015 [Acidovorax delafieldii 2AN]
gi|241368139|gb|EER62331.1| hypothetical protein AcdelDRAFT_0015 [Acidovorax delafieldii 2AN]
Length = 64
Score = 44.4 bits (104), Expect = 0.005, Method: Composition-based stats.
Identities = 13/41 (31%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGG 41
M +S LI T+ KN L + ++N L++ + A+ NG
Sbjct: 23 MNRSDLIDTLHAKN-GLVKMQCDAVLNTLIDTIQNAVKNGD 62
>gi|330880619|gb|EGH14768.1| single-stranded binding protein [Pseudomonas syringae pv.
morsprunorum str. M302280PT]
Length = 66
Score = 44.4 bits (104), Expect = 0.005, Method: Composition-based stats.
Identities = 15/63 (23%), Positives = 23/63 (36%), Gaps = 1/63 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K L+ IA+ + L + L +G + + G G V +R AR
Sbjct: 4 TKDQLVAGIAEAI-DAPKTTARNALEQLGHIVADQLESGAEITLPGIGKLKVAERPARTG 62
Query: 62 RAP 64
R P
Sbjct: 63 RNP 65
>gi|317064600|ref|ZP_07929085.1| predicted protein [Fusobacterium ulcerans ATCC 49185]
gi|313690276|gb|EFS27111.1| predicted protein [Fusobacterium ulcerans ATCC 49185]
Length = 96
Score = 44.4 bits (104), Expect = 0.005, Method: Composition-based stats.
Identities = 15/68 (22%), Positives = 35/68 (51%)
Query: 22 VEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLARAPLAQKVISVEEKMVPFFR 81
K + L+ + +AL G+++ G+F + +R R+ PL ++++++ K F
Sbjct: 26 ALKEIENFLKTIEEALIADGKIKFIEKGTFEILERKPRIISNPLTRELMTIYPKKSVKFT 85
Query: 82 AGKNLKER 89
+ K L ++
Sbjct: 86 SSKKLNKK 93
>gi|189425628|ref|YP_001952805.1| hypothetical protein Glov_2572 [Geobacter lovleyi SZ]
gi|189421887|gb|ACD96285.1| conserved hypothetical protein [Geobacter lovleyi SZ]
Length = 459
Score = 44.4 bits (104), Expect = 0.005, Method: Composition-based stats.
Identities = 8/29 (27%), Positives = 15/29 (51%)
Query: 64 PLAQKVISVEEKMVPFFRAGKNLKERLNS 92
P + I++E + V F+ LK+ +N
Sbjct: 431 PPRGEAITIEVRKVVTFKPSSVLKDAINK 459
>gi|282857713|ref|ZP_06266922.1| histone family protein DNA-binding protein [Pyramidobacter
piscolens W5455]
gi|282584383|gb|EFB89742.1| histone family protein DNA-binding protein [Pyramidobacter
piscolens W5455]
Length = 98
Score = 44.0 bits (103), Expect = 0.006, Method: Composition-based stats.
Identities = 17/92 (18%), Positives = 31/92 (33%), Gaps = 7/92 (7%)
Query: 1 MIKSSLIGTIAKKNPKLNY--QDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVR--KR 56
M LI +KN + + L + +AL + RV +RG G + +
Sbjct: 1 MNTDELIRQY-RKNSRYPKPRAQALADIENFLAVVAKALTDEERVNLRGVGILTTTLSEV 59
Query: 57 AARLARAPLAQKVISVEEKMVP--FFRAGKNL 86
+ + P + E F+ K +
Sbjct: 60 GDKTYKNPRTGESFVKEGHKTLRAKFKPSKAI 91
>gi|225026084|ref|ZP_03715276.1| hypothetical protein EUBHAL_00325 [Eubacterium hallii DSM 3353]
gi|224956601|gb|EEG37810.1| hypothetical protein EUBHAL_00325 [Eubacterium hallii DSM 3353]
Length = 118
Score = 44.0 bits (103), Expect = 0.006, Method: Composition-based stats.
Identities = 16/91 (17%), Positives = 29/91 (31%), Gaps = 4/91 (4%)
Query: 1 MIKSSLIGTIAKKNPK-LNYQDVEKIV-NMLLEEMTQALANGGRVEIRGFGSFSVRKRAA 58
+ + I +A K+ D+ I+ + + L +G R E++G
Sbjct: 4 ISRQEFIDMVAAKSNNRYPKIDLYYIIRDAFWC-LEDILRDGNRFEVKGILGIYPEYIEE 62
Query: 59 RLARAPLAQKVISVEEKMVPFFRAGKNLKER 89
R K +V P + LK
Sbjct: 63 RQYNNFNKGKA-TVPPHYKPVIKPYSRLKRA 92
>gi|187928584|ref|YP_001899071.1| histone family protein DNA-binding protein [Ralstonia pickettii
12J]
gi|241114161|ref|YP_002973636.1| histone family protein DNA-binding protein [Ralstonia pickettii
12D]
gi|187725474|gb|ACD26639.1| histone family protein DNA-binding protein [Ralstonia pickettii
12J]
gi|240868734|gb|ACS66392.1| histone family protein DNA-binding protein [Ralstonia pickettii
12D]
Length = 130
Score = 44.0 bits (103), Expect = 0.006, Method: Composition-based stats.
Identities = 19/96 (19%), Positives = 36/96 (37%), Gaps = 9/96 (9%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRK-----R 56
K+SL+ +A++ +L + V+ ++ L + AL G E G F V
Sbjct: 34 TKASLVSHLAEQT-ELEAKAVKSVLLHLENTILSALHKKGAGEFTLPGLFKVVSVKVPAT 92
Query: 57 AARLARAPLAQKVI---SVEEKMVPFFRAGKNLKER 89
R + P + + + R K +K+
Sbjct: 93 KRRFGKNPFTGQEQWFEAKPASVRVKVRPLKKVKDA 128
>gi|319786712|ref|YP_004146187.1| histone family protein DNA-binding protein [Pseudoxanthomonas
suwonensis 11-1]
gi|317465224|gb|ADV26956.1| histone family protein DNA-binding protein [Pseudoxanthomonas
suwonensis 11-1]
Length = 142
Score = 44.0 bits (103), Expect = 0.007, Method: Composition-based stats.
Identities = 17/95 (17%), Positives = 37/95 (38%), Gaps = 9/95 (9%)
Query: 3 KSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRA----- 57
KS+LI +++ + +DV+ ++ + + ++ A++ G G F V
Sbjct: 47 KSALIKHLSE-TSGVVAKDVKAVLAAVEDAVSGAISKKGAGSFTLPGLFKVTSVKVPAKP 105
Query: 58 ARLARAPLAQKV---ISVEEKMVPFFRAGKNLKER 89
R P ++ + + R K LK+
Sbjct: 106 KRKGINPFTKEEQWFAAKPASVKVKVRPLKKLKDA 140
>gi|94314477|ref|YP_587686.1| histone-like DNA-binding protein [Cupriavidus metallidurans CH34]
gi|93358329|gb|ABF12417.1| histone-like DNA-binding protein [Cupriavidus metallidurans CH34]
Length = 140
Score = 44.0 bits (103), Expect = 0.007, Method: Composition-based stats.
Identities = 19/96 (19%), Positives = 35/96 (36%), Gaps = 9/96 (9%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRK-----R 56
KSSL+ + + +L+ + V+ ++ L + A+ G E G F V
Sbjct: 44 NKSSLLAHLVAQT-ELDKKTVQTVLVHLENTIVSAIHKKGAGEFTLPGLFKVAAIQVPAT 102
Query: 57 AARLARAPLAQKV---ISVEEKMVPFFRAGKNLKER 89
R + P + + + R K LK+
Sbjct: 103 KKRFGKNPFTGQDQWFAAKPASVKVKVRPLKKLKDA 138
>gi|198274638|ref|ZP_03207170.1| hypothetical protein BACPLE_00790 [Bacteroides plebeius DSM
17135]
gi|198272085|gb|EDY96354.1| hypothetical protein BACPLE_00790 [Bacteroides plebeius DSM
17135]
Length = 381
Score = 44.0 bits (103), Expect = 0.007, Method: Composition-based stats.
Identities = 20/89 (22%), Positives = 36/89 (40%), Gaps = 1/89 (1%)
Query: 5 SLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLARAP 64
L+ A+K+ +L+ D L + +ALA V+++G G+F + A A
Sbjct: 9 ELVDLFARKS-QLSQADAALFAKEFLSLIEEALARDKYVKVKGLGTFKLITVDATEETAS 67
Query: 65 LAQKVISVEEKMVPFFRAGKNLKERLNSP 93
+ + F LK+ +N P
Sbjct: 68 NGPETTDSQSHTRVSFIPETGLKDLVNKP 96
>gi|207722729|ref|YP_002253164.1| histone-like dna-binding protein dna-binding plasmid [Ralstonia
solanacearum MolK2]
gi|206587911|emb|CAQ18492.1| probable histone-like dna-binding protein dna-binding plasmid
[Ralstonia solanacearum MolK2]
Length = 135
Score = 43.6 bits (102), Expect = 0.008, Method: Composition-based stats.
Identities = 17/96 (17%), Positives = 36/96 (37%), Gaps = 9/96 (9%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRK-----R 56
K+SL+ + ++ +++ + V+ ++ L + AL G E G F V
Sbjct: 39 TKASLVSHLVEQT-EVDAKSVKAVLQHLENTILGALHKKGAGEFTLPGLFKVVSVKVPAT 97
Query: 57 AARLARAPLAQKVI---SVEEKMVPFFRAGKNLKER 89
R + P + + + R K +K+
Sbjct: 98 KRRFGKNPFTGEDQWFEAKPATVRVKVRPLKKVKDA 133
>gi|48696473|ref|YP_024515.1| putative integration host factor [Staphylococcus phage K]
gi|66395088|ref|YP_240952.1| ORF147 [Staphylococcus phage G1]
gi|37729167|gb|AAO47534.1| ORF85 [Staphylococcus phage K]
gi|62637110|gb|AAX92221.1| ORF147 [Staphylococcus phage G1]
gi|119658122|gb|ABL87157.1| putative integration host factor [Staphylococcus phage 812]
gi|182627946|gb|ACB89108.1| gp ORF115 [Staphylococcus phage A5W]
Length = 101
Score = 43.6 bits (102), Expect = 0.009, Method: Composition-based stats.
Identities = 20/98 (20%), Positives = 41/98 (41%), Gaps = 5/98 (5%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGG-RVEIRGFGSFSVRKRAARL 60
+ + I++ QDVE+I++ + ++ L G +V+ F V +R +
Sbjct: 5 NRRDIARKISENT-GYYIQDVEEILSAETDAISDLLEEGYTKVKNHKFMQIEVIERKGKK 63
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNL---KERLNSPDS 95
A L ++ + + F+ K L +RLN +
Sbjct: 64 AWDGLNKEYFHLPNRKAIKFKPLKELEEVIDRLNEEEK 101
>gi|325914662|ref|ZP_08177003.1| bacterial nucleoid DNA-binding protein [Xanthomonas vesicatoria
ATCC 35937]
gi|325539164|gb|EGD10819.1| bacterial nucleoid DNA-binding protein [Xanthomonas vesicatoria
ATCC 35937]
Length = 92
Score = 43.6 bits (102), Expect = 0.009, Method: Composition-based stats.
Identities = 27/94 (28%), Positives = 37/94 (39%), Gaps = 8/94 (8%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSV---RKRA 57
M + L+ +A + L ++V ML E + L G V I GFG F A
Sbjct: 1 MNRKDLVELLAHEL-DLPKHKTTRLVAMLFEAIVAQLGKGREVNISGFGVFGSEPVTIHA 59
Query: 58 ARLAR-APLAQKVISVEEKMVPFFRAGKNLKERL 90
A R AP Q ++ P FR L +L
Sbjct: 60 ASTRRLAPSLQSTHTI---RRPTFRPSDGLTRKL 90
>gi|254516714|ref|ZP_05128773.1| bacterial DNA-binding protein [gamma proteobacterium NOR5-3]
gi|219675137|gb|EED31504.1| bacterial DNA-binding protein [gamma proteobacterium NOR5-3]
Length = 139
Score = 43.6 bits (102), Expect = 0.010, Method: Composition-based stats.
Identities = 15/96 (15%), Positives = 32/96 (33%), Gaps = 9/96 (9%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEI-----RGFGSFSVRK 55
M K+ ++ +IA+ L+ + V ++ L + +++ E +
Sbjct: 41 MTKTQVLASIAEST-GLSKKQVGDVMAELETLIERSVKKRAVGEFTLPGLMKITTVKKPA 99
Query: 56 RAARLARAPLAQKVIS---VEEKMVPFFRAGKNLKE 88
AR P + + R K +KE
Sbjct: 100 VKARKGINPFTGEETMFKAKPASVAVKVRPLKKMKE 135
>gi|67923415|ref|ZP_00516894.1| Histone-like bacterial DNA-binding protein [Crocosphaera watsonii
WH 8501]
gi|67854750|gb|EAM50030.1| Histone-like bacterial DNA-binding protein [Crocosphaera watsonii
WH 8501]
Length = 54
Score = 43.6 bits (102), Expect = 0.010, Method: Composition-based stats.
Identities = 17/51 (33%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSF 51
M K L+ IA K L ++ I++ L E + + +A+G +V + GFG+F
Sbjct: 1 MNKEDLVNMIAAKTR-LTKKETIHILDSLTETIMETVASGDKVVLVGFGTF 50
>gi|330962997|gb|EGH63257.1| single-stranded binding protein [Pseudomonas syringae pv.
maculicola str. ES4326]
Length = 63
Score = 43.6 bits (102), Expect = 0.010, Method: Composition-based stats.
Identities = 16/63 (25%), Positives = 25/63 (39%)
Query: 26 VNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLARAPLAQKVISVEEKMVPFFRAGKN 85
+ L + + L +G + + G G V +R AR R P I + K F K
Sbjct: 1 LEQLGQIVADQLESGAEITLPGIGKLKVAERPARTGRNPSTGAAIEIAAKKAIKFVPAKV 60
Query: 86 LKE 88
L +
Sbjct: 61 LND 63
>gi|218258130|ref|ZP_03474532.1| hypothetical protein PRABACTJOHN_00186 [Parabacteroides johnsonii
DSM 18315]
gi|218225723|gb|EEC98373.1| hypothetical protein PRABACTJOHN_00186 [Parabacteroides johnsonii
DSM 18315]
Length = 146
Score = 43.2 bits (101), Expect = 0.010, Method: Composition-based stats.
Identities = 21/91 (23%), Positives = 43/91 (47%), Gaps = 9/91 (9%)
Query: 5 SLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLARAP 64
L I+ ++ + DV+ I++ L+ M + L G V++ GSF ++ +
Sbjct: 38 ELCDLISAQSTA-SSGDVKLILDELVNVMRRNLGKGEVVKVGELGSFQLQFGSTGTV--- 93
Query: 65 LAQKV---ISVEEKMVPFFRAGKNLKERLNS 92
+K + ++ + + FR GK LKE + +
Sbjct: 94 -TEKEFNQVLIKSRRIV-FRPGKLLKEAVKN 122
>gi|198283420|ref|YP_002219741.1| histone family protein DNA-binding protein [Acidithiobacillus
ferrooxidans ATCC 53993]
gi|218665856|ref|YP_002426013.1| DNA-binding protein, HU family [Acidithiobacillus ferrooxidans
ATCC 23270]
gi|198247941|gb|ACH83534.1| histone family protein DNA-binding protein [Acidithiobacillus
ferrooxidans ATCC 53993]
gi|218518069|gb|ACK78655.1| DNA-binding protein, HU family [Acidithiobacillus ferrooxidans
ATCC 23270]
Length = 73
Score = 43.2 bits (101), Expect = 0.011, Method: Composition-based stats.
Identities = 11/90 (12%), Positives = 24/90 (26%), Gaps = 28/90 (31%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
+ L+ + +++ ++V +R
Sbjct: 4 TRQELMDYLVD-TFGFSHKGCAELVASFF---------------------------SRPG 35
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R P + V F+A L++R N
Sbjct: 36 RNPGTGVPCEITACRVVTFKARPKLRQRCN 65
>gi|330884569|gb|EGH18718.1| single-stranded binding protein [Pseudomonas syringae pv.
glycinea str. race 4]
Length = 53
Score = 43.2 bits (101), Expect = 0.012, Method: Composition-based stats.
Identities = 14/53 (26%), Positives = 21/53 (39%)
Query: 24 KIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLARAPLAQKVISVEEKM 76
K + L + L +G + + G G V +R AR R P I + K
Sbjct: 1 KALEQLGHIVADQLESGAEITLPGIGKLKVAERPARTVRHPSTGAAIEIAAKK 53
>gi|162448296|ref|YP_001610663.1| hypothetical protein sce0027 [Sorangium cellulosum 'So ce 56']
gi|161158878|emb|CAN90183.1| unnamed protein product [Sorangium cellulosum 'So ce 56']
Length = 102
Score = 43.2 bits (101), Expect = 0.012, Method: Composition-based stats.
Identities = 17/95 (17%), Positives = 37/95 (38%), Gaps = 9/95 (9%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEI--RGFGSFSVRKRAA- 58
K+ +I +A+ L+ + V +++ L E + + L G E+ G ++ A
Sbjct: 8 TKAQMIVGLAEAT-HLDKKSVASVLDALGELVKKELGPEGPGEVTVPGLVKIKAKEIPAT 66
Query: 59 --RLARAPLAQKVISV---EEKMVPFFRAGKNLKE 88
R P ++ +++ K LK+
Sbjct: 67 QDREGINPFTKQPMTIKGKPASRKLRAAPVKALKD 101
>gi|26553701|ref|NP_757635.1| DNA-binding histone-like protein HU-alpha [Mycoplasma penetrans
HF-2]
gi|26453708|dbj|BAC44039.1| DNA-binding histone-like protein HU-alpha [Mycoplasma penetrans
HF-2]
Length = 121
Score = 43.2 bits (101), Expect = 0.012, Method: Composition-based stats.
Identities = 17/89 (19%), Positives = 34/89 (38%), Gaps = 1/89 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K +I I+ N ++ +++++ LL + L + + G V+ +L
Sbjct: 20 TKKEIIKLISN-NSNISEPIIKELIEDLLSLIKAELDRCEQFRLFDLGKIKVKPGHKKLT 78
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERL 90
PL + + K F K KE +
Sbjct: 79 TNPLTGETSTEWTKSKIKFVFSKQYKELV 107
>gi|293606886|ref|ZP_06689234.1| conserved hypothetical protein [Achromobacter piechaudii ATCC
43553]
gi|292814738|gb|EFF73871.1| conserved hypothetical protein [Achromobacter piechaudii ATCC
43553]
Length = 152
Score = 42.8 bits (100), Expect = 0.014, Method: Composition-based stats.
Identities = 18/97 (18%), Positives = 35/97 (36%), Gaps = 9/97 (9%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRA--- 57
M K+ L+ I +++ + + V+ ++ L + ++ G E G F V +
Sbjct: 55 MNKTQLVAYIVEQS-GVEAKAVKAVLASLETSVLGSVDKKGAGEFTLPGLFKVAVQKVPA 113
Query: 58 --ARLARAPLAQKVISVEEK---MVPFFRAGKNLKER 89
R + P K + R K LK+
Sbjct: 114 KAKRFGKDPFTGVERWFPAKPASVKVKVRPLKKLKDA 150
>gi|330885370|gb|EGH19519.1| hypothetical protein Pgy4_41759 [Pseudomonas syringae pv.
glycinea str. race 4]
Length = 34
Score = 42.8 bits (100), Expect = 0.014, Method: Composition-based stats.
Identities = 10/34 (29%), Positives = 13/34 (38%)
Query: 59 RLARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R R P I + K V F K L + +N
Sbjct: 1 RTGRNPSTGAAIEIAAKKVIKFVPAKVLTDSINK 34
>gi|87311600|ref|ZP_01093718.1| probable DNA-binding protein HU [Blastopirellula marina DSM 3645]
gi|87285722|gb|EAQ77638.1| probable DNA-binding protein HU [Blastopirellula marina DSM 3645]
Length = 113
Score = 42.8 bits (100), Expect = 0.015, Method: Composition-based stats.
Identities = 23/99 (23%), Positives = 46/99 (46%), Gaps = 11/99 (11%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANG--GRVEIRGFGSFSVRKRAAR 59
K+ L+ IA++ + +DV +++ L ++ ++L G + + G +K AR
Sbjct: 16 TKTELLNNIAEET-GIAKKDVSIVLDSLQNQVKKSLGKTGAGAISLPGLIKIEKKKVPAR 74
Query: 60 LAR----AP-LAQKVISVEEK---MVPFFRAGKNLKERL 90
A+ P +++ V K + RA KNLK+ +
Sbjct: 75 PAKKGVPNPFKPGELMDVPAKPASVKVKIRALKNLKDMV 113
>gi|213609751|ref|ZP_03369577.1| integration host factor subunit beta [Salmonella enterica subsp.
enterica serovar Typhi str. E98-2068]
Length = 43
Score = 42.8 bits (100), Expect = 0.015, Method: Composition-based stats.
Identities = 16/43 (37%), Positives = 22/43 (51%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRV 43
M KS LI +A + + + VE V +LE M LA G R+
Sbjct: 1 MTKSELIERLATQQSHIPAKAVEDAVKEMLEHMASTLAQGERI 43
>gi|126667926|ref|ZP_01738891.1| integration host factor subunit alpha [Marinobacter sp. ELB17]
gi|126627586|gb|EAZ98218.1| integration host factor subunit alpha [Marinobacter sp. ELB17]
Length = 85
Score = 42.8 bits (100), Expect = 0.016, Method: Composition-based stats.
Identities = 16/58 (27%), Positives = 31/58 (53%)
Query: 16 KLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLARAPLAQKVISVE 73
LN ++ ++IV +E+ AL+ +V++ GFG+F +R + R + A+ V
Sbjct: 25 GLNKREAKEIVGAFFDEIRGALSQNEQVKLSGFGNFDLRDKKERPGQKLKAKVEAYVA 82
>gi|116695192|ref|YP_840768.1| DNA-binding protein, histone-like [Ralstonia eutropha H16]
gi|113529691|emb|CAJ96038.1| Bacterial DNA-binding protein, histone-like [Ralstonia eutropha
H16]
Length = 152
Score = 42.8 bits (100), Expect = 0.017, Method: Composition-based stats.
Identities = 20/96 (20%), Positives = 34/96 (35%), Gaps = 9/96 (9%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKR----- 56
KSSL+ + + +L + V+ ++ L + AL G E G V +
Sbjct: 56 NKSSLVAHLVAQT-QLEAKAVKTVLAHLETTIIGALNKKGAGEFTLPGLLKVTAQQVPAK 114
Query: 57 AARLARAPLAQKVISVEEK---MVPFFRAGKNLKER 89
R + P + K + R K LK+
Sbjct: 115 KKRFGKDPFTGEERWFPAKPASVKVKVRPLKKLKDA 150
>gi|38637948|ref|NP_942922.1| histone-like protein [Ralstonia eutropha H16]
gi|32527286|gb|AAP86036.1| histone-like protein [Ralstonia eutropha H16]
Length = 147
Score = 42.8 bits (100), Expect = 0.017, Method: Composition-based stats.
Identities = 21/96 (21%), Positives = 36/96 (37%), Gaps = 9/96 (9%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRK-----R 56
KSSL+ + + +L+ + V+ ++ L M A+ G E G F V
Sbjct: 51 NKSSLLAHLVAQT-ELDKKTVQTVLTHLENTMVSAIHKKGAGEFTFPGLFKVSAIQVPAT 109
Query: 57 AARLARAPLAQKV---ISVEEKMVPFFRAGKNLKER 89
R + P + + + RA K LK+
Sbjct: 110 KKRFGKNPFTGQEQWFAAKPASVKVKVRAMKKLKDA 145
>gi|157093381|gb|ABV22345.1| histone-like protein [Noctiluca scintillans]
Length = 101
Score = 42.4 bits (99), Expect = 0.018, Method: Composition-based stats.
Identities = 15/86 (17%), Positives = 32/86 (37%), Gaps = 6/86 (6%)
Query: 12 KKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKR---AARLARAPLAQK 68
+ L ++V+ V ++ + L G ++ G + ++K+ AR P ++
Sbjct: 16 AETVGLKPKEVKGAVEAVMGVASGELKKHGSFKLAGVLALKLKKKPATPARKGVNPFTKE 75
Query: 69 VIS---VEEKMVPFFRAGKNLKERLN 91
A K LK+ +N
Sbjct: 76 PCVFKAKPASKTVRVLAMKKLKDAVN 101
>gi|88705600|ref|ZP_01103310.1| histone-like protein [Congregibacter litoralis KT71]
gi|88700113|gb|EAQ97222.1| histone-like protein [Congregibacter litoralis KT71]
Length = 140
Score = 42.4 bits (99), Expect = 0.020, Method: Composition-based stats.
Identities = 15/96 (15%), Positives = 31/96 (32%), Gaps = 9/96 (9%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEI-----RGFGSFSVRK 55
M K+ ++ +IA+ L + V ++ L + +++ E +
Sbjct: 42 MTKTQVMASIAEST-GLTKKQVGDVMTELETLIERSIKKRAVGEFTLPGLMKITTVKKPA 100
Query: 56 RAARLARAPLAQKVIS---VEEKMVPFFRAGKNLKE 88
AR P + + R K +KE
Sbjct: 101 VKARKGINPFTGEETMFKAKPASVAVKVRPLKKMKE 136
>gi|157825821|ref|YP_001493541.1| integration host factor beta-subunit [Rickettsia akari str.
Hartford]
gi|157799779|gb|ABV75033.1| Integration host factor beta-subunit [Rickettsia akari str.
Hartford]
Length = 82
Score = 42.4 bits (99), Expect = 0.021, Method: Composition-based stats.
Identities = 25/86 (29%), Positives = 47/86 (54%), Gaps = 10/86 (11%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ LI + +K L +DV+ V+++L+ ++++L R+EIR F +FS+RKR
Sbjct: 3 TKNYLIDKVHEKLNYLAKEDVKDSVDLILDYLSRSLKEQERIEIRNFCNFSIRKRKF--- 59
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLK 87
P + K ++ ++R K+L
Sbjct: 60 --PKSNKFYNI-----VYYRMPKSLF 78
>gi|257469614|ref|ZP_05633706.1| hypothetical protein FulcA4_09758 [Fusobacterium ulcerans ATCC
49185]
gi|317063850|ref|ZP_07928335.1| predicted protein [Fusobacterium ulcerans ATCC 49185]
gi|313689526|gb|EFS26361.1| predicted protein [Fusobacterium ulcerans ATCC 49185]
Length = 98
Score = 42.4 bits (99), Expect = 0.021, Method: Composition-based stats.
Identities = 22/92 (23%), Positives = 43/92 (46%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M +S I KK NY + +K V++ + + L + ++ I+ +G F + +R
Sbjct: 1 MKESDFIKLYKKKIKTKNYMETKKKVDLFWNALFKLLNDEKKIVIKNWGIFEKKSVKSRK 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
P + + K + FRAG+ L +++N
Sbjct: 61 VVVPTWTEARYTKPKEIIKFRAGERLIKKVNK 92
>gi|330884448|gb|EGH18597.1| hypothetical protein Pgy4_37141 [Pseudomonas syringae pv.
glycinea str. race 4]
Length = 47
Score = 42.4 bits (99), Expect = 0.021, Method: Composition-based stats.
Identities = 13/43 (30%), Positives = 18/43 (41%)
Query: 50 SFSVRKRAARLARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
V +R AR R P I + K V F + K L + +N
Sbjct: 1 KLKVAERPARTVRHPSTGAAIEIAAKKVVKFVSAKVLNDAINK 43
>gi|228943512|ref|ZP_04105952.1| DNA-binding protein HU [Bacillus thuringiensis serovar berliner
ATCC 10792]
gi|228976071|ref|ZP_04136585.1| DNA-binding protein HU [Bacillus thuringiensis serovar
thuringiensis str. T01001]
gi|228783642|gb|EEM31707.1| DNA-binding protein HU [Bacillus thuringiensis serovar
thuringiensis str. T01001]
gi|228816164|gb|EEM62349.1| DNA-binding protein HU [Bacillus thuringiensis serovar berliner
ATCC 10792]
Length = 54
Score = 42.1 bits (98), Expect = 0.023, Method: Composition-based stats.
Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRK 55
M K+ L IA+K +L ++ +L+ + ALAN +V+I GF +F +
Sbjct: 1 MNKTELTKVIAEKT-ELTQKEAVAATQAVLDTIINALANKEKVQILGFSTFEGCE 54
>gi|94317729|gb|ABF15024.1| DNA-binding protein [Salmonella enterica subsp. enterica serovar
Newport]
Length = 48
Score = 42.1 bits (98), Expect = 0.023, Method: Composition-based stats.
Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFG 49
M KS LI +A+ + ++ E VN L+ +T+ L GG V + GFG
Sbjct: 1 MNKSELIMKVAE-DADISKAKAEAAVNALINSVTEELKAGGTVALTGFG 48
>gi|188591441|ref|YP_001796040.1| putative Histone-like DNA-binding protein [Cupriavidus taiwanensis]
gi|170938836|emb|CAP63835.1| putative Histone-like DNA-binding protein [Cupriavidus taiwanensis
LMG 19424]
Length = 143
Score = 42.1 bits (98), Expect = 0.024, Method: Composition-based stats.
Identities = 19/96 (19%), Positives = 35/96 (36%), Gaps = 9/96 (9%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRK-----R 56
KSSL+ + + +L+ + V+ ++ L + A+ G E G F V
Sbjct: 47 NKSSLLAHLVAQT-ELDKKTVQTVLAHLENTVLSAVHKKGAGEFTLPGLFKVSAIQVPAT 105
Query: 57 AARLARAPLAQKV---ISVEEKMVPFFRAGKNLKER 89
R + P + + + R K LK+
Sbjct: 106 KKRFGKNPFTGQEQWFAAKPASVKVKVRPLKKLKDA 141
>gi|157827266|ref|YP_001496330.1| integration host factor beta-subunit [Rickettsia bellii OSU
85-389]
gi|157802570|gb|ABV79293.1| Integration host factor beta-subunit [Rickettsia bellii OSU
85-389]
Length = 88
Score = 42.1 bits (98), Expect = 0.024, Method: Composition-based stats.
Identities = 21/56 (37%), Positives = 32/56 (57%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRA 57
K LI I K+ L+ +DV VN++L ++ +L +EIR FG+FS+R R
Sbjct: 11 TKIDLINKIHKQLDYLSKEDVSDSVNLILNYLSNSLKEQNCIEIRNFGNFSIRTRK 66
>gi|289651720|ref|ZP_06483063.1| hypothetical protein Psyrpa2_28829 [Pseudomonas syringae pv.
aesculi str. 2250]
Length = 36
Score = 42.1 bits (98), Expect = 0.024, Method: Composition-based stats.
Identities = 9/32 (28%), Positives = 13/32 (40%)
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
R P I + K V F + K L + +N
Sbjct: 1 GRNPSTGASIEIAAKKVVKFVSAKVLNDAINK 32
>gi|257469219|ref|ZP_05633313.1| hypothetical protein FulcA4_07747 [Fusobacterium ulcerans ATCC
49185]
Length = 121
Score = 42.1 bits (98), Expect = 0.026, Method: Composition-based stats.
Identities = 17/96 (17%), Positives = 38/96 (39%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M ++ + KK N ++ ++ + + E + +A +V ++ FG+F +K R
Sbjct: 16 MTEAEFLELYKKKRKLKNIKEAKEKLELFWEVIFAGIATERKVIVKDFGTFEAKKLKPRK 75
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDST 96
+ +E+ FR E +N +
Sbjct: 76 IYDIHKNSLYMTKERTALKFRVKNGFMEIVNKKVNN 111
>gi|257469062|ref|ZP_05633156.1| hypothetical protein FulcA4_06940 [Fusobacterium ulcerans ATCC
49185]
gi|317063308|ref|ZP_07927793.1| predicted protein [Fusobacterium ulcerans ATCC 49185]
gi|313688984|gb|EFS25819.1| predicted protein [Fusobacterium ulcerans ATCC 49185]
Length = 106
Score = 42.1 bits (98), Expect = 0.026, Method: Composition-based stats.
Identities = 15/100 (15%), Positives = 41/100 (41%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M + + K + ++ ++ + + + + +A +V ++ FG+F V+K +R
Sbjct: 1 MTEIEFLKLYKNKRKLKSIKEAKEKLKIFWDIIFAGIALEKKVTVKDFGTFEVKKLKSRK 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDSTLSNS 100
+ +E+ FR + +N S+ + +
Sbjct: 61 IYNIHKNSLYMTKERTALKFRVKNEFMKIVNKKVSSCNLT 100
>gi|94152492|ref|YP_581899.1| histone-like bacterial DNA-binding protein (Bph2) [Cupriavidus
metallidurans CH34]
gi|93358862|gb|ABF12949.1| Histone-like bacterial DNA-binding protein (Bph2) [Cupriavidus
metallidurans CH34]
gi|222870016|gb|EEF07147.1| predicted protein [Populus trichocarpa]
Length = 147
Score = 42.1 bits (98), Expect = 0.027, Method: Composition-based stats.
Identities = 19/96 (19%), Positives = 34/96 (35%), Gaps = 9/96 (9%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRK-----R 56
KSSL+ + + +L+ + V+ ++ L + A+ G E G F V
Sbjct: 51 NKSSLLAHLIAQT-ELDKKTVQTVLAHLENTIVSAIHKKGAGEFTLPGLFKVAAIQVPAT 109
Query: 57 AARLARAPLAQKV---ISVEEKMVPFFRAGKNLKER 89
R + P + + R K LK+
Sbjct: 110 KKRFGKNPFTGVDQWFAAKPASVKVKVRPLKKLKDA 145
>gi|29349440|ref|NP_812943.1| putative non-specific DNA-binding protein [Bacteroides
thetaiotaomicron VPI-5482]
gi|29341349|gb|AAO79137.1| conserved hypothetical protein, putative non-specific DNA-binding
protein [Bacteroides thetaiotaomicron VPI-5482]
Length = 158
Score = 42.1 bits (98), Expect = 0.028, Method: Composition-based stats.
Identities = 20/97 (20%), Positives = 36/97 (37%), Gaps = 17/97 (17%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVR------ 54
M + +I IA + + DV+ +++ L+ + + LANG + + GSF
Sbjct: 32 MTQRQIIDQIADRCT-VTGSDVKAVLDALMTVIKRNLANGSPIRLGDLGSFRPSVSGIGS 90
Query: 55 -KRAARLARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
A +VI V +KE +
Sbjct: 91 ENVDKFTASNVKKARVIYVP---------SAEIKEAV 118
>gi|154493980|ref|ZP_02033300.1| hypothetical protein PARMER_03325 [Parabacteroides merdae ATCC
43184]
gi|154086240|gb|EDN85285.1| hypothetical protein PARMER_03325 [Parabacteroides merdae ATCC
43184]
Length = 148
Score = 42.1 bits (98), Expect = 0.028, Method: Composition-based stats.
Identities = 22/91 (24%), Positives = 44/91 (48%), Gaps = 9/91 (9%)
Query: 5 SLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLARAP 64
L I+ ++ + DV+ I++ L+ M + L G V++ GSF ++ +
Sbjct: 38 ELCDLISAQSTA-SSGDVKLILDELVNVMRRNLGKGEVVKVGELGSFQLQFGSTGT---- 92
Query: 65 LAQKVIS---VEEKMVPFFRAGKNLKERLNS 92
L +K S ++ + + FR GK LK+ + +
Sbjct: 93 LTEKEFSHALIKSRRIV-FRPGKLLKDAIKN 122
>gi|317405764|gb|EFV86055.1| histone family protein DNA-binding protein [Achromobacter
xylosoxidans C54]
Length = 152
Score = 42.1 bits (98), Expect = 0.029, Method: Composition-based stats.
Identities = 18/96 (18%), Positives = 35/96 (36%), Gaps = 9/96 (9%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRA---- 57
K+ LI I +++ + + V+ ++ L + ++ G E G F V +
Sbjct: 56 NKTQLIAYIVEQS-GVEAKSVKAVLASLETSVLSSVDKKGAGEFTLPGLFKVAVQKVPAK 114
Query: 58 -ARLARAPLAQKVISVEEK---MVPFFRAGKNLKER 89
R + P + K + R K LK+
Sbjct: 115 AKRFGKDPFTGEERWFPAKPASVKVKVRPLKKLKDA 150
>gi|311107989|ref|YP_003980842.1| histone-like DNA-binding protein [Achromobacter xylosoxidans A8]
gi|310762678|gb|ADP18127.1| histone-like DNA-binding protein [Achromobacter xylosoxidans A8]
Length = 156
Score = 42.1 bits (98), Expect = 0.029, Method: Composition-based stats.
Identities = 18/96 (18%), Positives = 35/96 (36%), Gaps = 9/96 (9%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRA---- 57
K+ LI I +++ + + V+ ++ L + ++ G E G F V +
Sbjct: 60 NKTQLIAYIVEQS-GVEAKSVKAVLASLETSVLSSVDKKGAGEFTLPGLFKVAVQKVPAK 118
Query: 58 -ARLARAPLAQKVISVEEK---MVPFFRAGKNLKER 89
R + P + K + R K LK+
Sbjct: 119 AKRFGKDPFTGEERWFPAKPASVKVKVRPLKKLKDA 154
>gi|119476899|ref|ZP_01617180.1| DNA-binding protein HU, putative [marine gamma proteobacterium
HTCC2143]
gi|119449706|gb|EAW30943.1| DNA-binding protein HU, putative [marine gamma proteobacterium
HTCC2143]
Length = 216
Score = 41.7 bits (97), Expect = 0.033, Method: Composition-based stats.
Identities = 19/96 (19%), Positives = 31/96 (32%), Gaps = 9/96 (9%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAA-- 58
M KS + I + L+ + V + L + +++A G E G V
Sbjct: 118 MTKSQMFTDIGEAT-DLSRKQVGAVFAELESLIGRSIAKRGLGEFTIPGLMKVTTVKKAA 176
Query: 59 ---RLARAPLAQKV---ISVEEKMVPFFRAGKNLKE 88
R P + + + R K LKE
Sbjct: 177 KKARKGINPFTGEEQIFKAKPASIAVKVRPLKKLKE 212
>gi|1773080|gb|AAB40156.1| BpH2 [Bordetella pertussis 18323]
Length = 145
Score = 41.7 bits (97), Expect = 0.035, Method: Composition-based stats.
Identities = 18/96 (18%), Positives = 33/96 (34%), Gaps = 9/96 (9%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRA---- 57
KS LI + + + + V+ ++ L + ++ G E G F V +
Sbjct: 49 NKSQLIAYLVENT-GVEAKSVKAVLAGLESSVLASVDKKGAGEFTLPGLFKVAVQKVPAK 107
Query: 58 -ARLARAPLAQKVISVEEK---MVPFFRAGKNLKER 89
R + P + K + R K LK+
Sbjct: 108 AKRFGKDPFTGEERWFPAKPASVKVKVRPLKKLKDA 143
>gi|253570191|ref|ZP_04847600.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
gi|251840572|gb|EES68654.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
Length = 158
Score = 41.7 bits (97), Expect = 0.037, Method: Composition-based stats.
Identities = 20/97 (20%), Positives = 36/97 (37%), Gaps = 17/97 (17%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVR------ 54
M + +I IA + + DV+ +++ L+ + + LANG + + GSF
Sbjct: 32 MTQRQIIDQIADRCT-VTGSDVKAVLDALMTVIKRNLANGSPIRLGDLGSFRPSVSGIGS 90
Query: 55 -KRAARLARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
A +VI V +KE +
Sbjct: 91 ENVDKFTASNVKKARVIYVP---------STEIKEAV 118
>gi|326319191|ref|YP_004236863.1| histone family protein DNA-binding protein [Acidovorax avenae
subsp. avenae ATCC 19860]
gi|323376027|gb|ADX48296.1| histone family protein DNA-binding protein [Acidovorax avenae
subsp. avenae ATCC 19860]
Length = 156
Score = 41.7 bits (97), Expect = 0.038, Method: Composition-based stats.
Identities = 17/96 (17%), Positives = 35/96 (36%), Gaps = 9/96 (9%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKR----- 56
K+SLI +A++ + + + ++ L + ++ G E G + +
Sbjct: 60 TKTSLIAHLAEQ-AGVEPKAAKAVMAALEATILGSVHKKGSGEFTLPGLMKIGLQQVPAK 118
Query: 57 AARLARAPLAQKVISVEEK---MVPFFRAGKNLKER 89
R + P + K + RA K LK+
Sbjct: 119 KKRFGKDPFTGEERWFPAKPASVKIKTRALKKLKDA 154
>gi|1708440|sp|P80606|IHFB_RHILE RecName: Full=Integration host factor subunit beta;
Short=IHF-beta
Length = 30
Score = 41.7 bits (97), Expect = 0.038, Method: Composition-based stats.
Identities = 15/29 (51%), Positives = 20/29 (68%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNML 29
MIKS L+ +A +NP L ++DVE IVN
Sbjct: 1 MIKSELVQIVAARNPHLYHRDVENIVNAF 29
>gi|254521039|ref|ZP_05133094.1| bacterial DNA-binding protein [Stenotrophomonas sp. SKA14]
gi|219718630|gb|EED37155.1| bacterial DNA-binding protein [Stenotrophomonas sp. SKA14]
Length = 132
Score = 41.7 bits (97), Expect = 0.039, Method: Composition-based stats.
Identities = 16/96 (16%), Positives = 33/96 (34%), Gaps = 9/96 (9%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIR-----GFGSFSVRKR 56
KS L+ IA+ + + +DV ++ L + ++ G + +V +
Sbjct: 36 TKSGLVAHIAEAS-GVVAKDVRAVLASLESAVASSVHKKGAGSFTLPGLLKITTVNVAAK 94
Query: 57 AARLARAPLAQKV---ISVEEKMVPFFRAGKNLKER 89
R P ++ + R K LK+
Sbjct: 95 PKRKGINPFTKEEQWFAAKPATTKLKVRPLKKLKDA 130
>gi|91205550|ref|YP_537905.1| integration host factor beta-subunit [Rickettsia bellii RML369-C]
gi|91069094|gb|ABE04816.1| Integration host factor beta-subunit [Rickettsia bellii RML369-C]
Length = 88
Score = 41.3 bits (96), Expect = 0.040, Method: Composition-based stats.
Identities = 22/56 (39%), Positives = 33/56 (58%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRA 57
K LI I K+ L+ +DV VN++L ++ +L R+EIR FG+FS+R R
Sbjct: 11 TKIDLINKIHKQLDYLSKEDVSDSVNLILNYLSNSLKEQNRIEIRNFGNFSIRTRK 66
>gi|303271375|ref|XP_003055049.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226463023|gb|EEH60301.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 132
Score = 41.3 bits (96), Expect = 0.043, Method: Composition-based stats.
Identities = 21/91 (23%), Positives = 39/91 (42%), Gaps = 3/91 (3%)
Query: 5 SLIGTIAKKNPK--LNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLAR 62
LI K K + E + L+ + ++A+G RV +GFGSF+ +A+R+ +
Sbjct: 43 DLIKEEVGKVGKAAITKAQAEAALEALIGGIKSSVASGQRVTFQGFGSFTPVTKASRMVQ 102
Query: 63 APLAQKVISVEEKMVPFFRAGKNLKERLNSP 93
P + + E+ F+ K +
Sbjct: 103 TPK-GVKMQLPERKGLRFKISSEFKSAVQGK 132
>gi|73537884|ref|YP_298251.1| histone-like DNA-binding protein [Ralstonia eutropha JMP134]
gi|72121221|gb|AAZ63407.1| Histone-like bacterial DNA-binding protein [Ralstonia eutropha
JMP134]
Length = 154
Score = 41.3 bits (96), Expect = 0.044, Method: Composition-based stats.
Identities = 19/96 (19%), Positives = 34/96 (35%), Gaps = 9/96 (9%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKR----- 56
KSSL+ + + ++ + V+ ++ L + AL G E G V +
Sbjct: 57 NKSSLVAHLVAQT-QMEPKAVKTVLAHLENTIVGALNKKGAGEFTLPGLLKVTAQQVPAK 115
Query: 57 AARLARAPLAQKVISVEEK---MVPFFRAGKNLKER 89
R + P + K + R K LK+
Sbjct: 116 KKRFGKDPFTGEERWFPAKPASVKVKVRPLKKLKDA 151
>gi|15838537|ref|NP_299225.1| histone-like protein [Xylella fastidiosa 9a5c]
gi|9107041|gb|AAF84745.1|AE004013_11 histone-like protein [Xylella fastidiosa 9a5c]
Length = 130
Score = 41.3 bits (96), Expect = 0.044, Method: Composition-based stats.
Identities = 19/95 (20%), Positives = 35/95 (36%), Gaps = 9/95 (9%)
Query: 3 KSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGG--RVEIRGFGSFSVRKRAA-- 58
KS+L+ +A+ + L +DV ++ L + +L G + G S A
Sbjct: 35 KSALVAHLAESSA-LAAKDVRTLLGALENTIHASLHKKGVGSFTLPGLLKISTVNVPAKP 93
Query: 59 -RLARAPLAQKV---ISVEEKMVPFFRAGKNLKER 89
R P ++ + + R K LK+
Sbjct: 94 KRKGINPFTKEEQWFAAKPASVKIKTRPLKKLKDA 128
>gi|33593070|ref|NP_880714.1| DNA-binding protein Bph2 [Bordetella pertussis Tohama I]
gi|33596366|ref|NP_884009.1| DNA-binding protein Bph2 [Bordetella parapertussis 12822]
gi|33563445|emb|CAE42326.1| DNA-binding protein Bph2 [Bordetella pertussis Tohama I]
gi|33566135|emb|CAE37035.1| DNA-binding protein Bph2 [Bordetella parapertussis]
gi|332382482|gb|AEE67329.1| DNA-binding protein Bph2 [Bordetella pertussis CS]
Length = 105
Score = 41.3 bits (96), Expect = 0.046, Method: Composition-based stats.
Identities = 18/96 (18%), Positives = 33/96 (34%), Gaps = 9/96 (9%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRA---- 57
KS LI + + + + V+ ++ L + ++ G E G F V +
Sbjct: 9 NKSQLIAYLVENT-GVEAKSVKAVLAGLESSVLASVDKKGAGEFTLPGLFKVAVQKVPAK 67
Query: 58 -ARLARAPLAQKVISVEEK---MVPFFRAGKNLKER 89
R + P + K + R K LK+
Sbjct: 68 AKRFGKDPFTGEERWFPAKPASVKVKVRPLKKLKDA 103
>gi|56130790|ref|YP_145693.1| hypothetical protein pMOL30_161 [Ralstonia metallidurans CH34]
gi|56068780|emb|CAI11342.1| hypothetical protein [Cupriavidus metallidurans CH34]
Length = 122
Score = 41.3 bits (96), Expect = 0.047, Method: Composition-based stats.
Identities = 19/96 (19%), Positives = 34/96 (35%), Gaps = 9/96 (9%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRK-----R 56
KSSL+ + + +L+ + V+ ++ L + A+ G E G F V
Sbjct: 26 NKSSLLAHLIAQT-ELDKKTVQTVLAHLENTIVSAIHKKGAGEFTLPGLFKVAAIQVPAT 84
Query: 57 AARLARAPLAQKV---ISVEEKMVPFFRAGKNLKER 89
R + P + + R K LK+
Sbjct: 85 KKRFGKNPFTGVDQWFAAKPASVKVKVRPLKKLKDA 120
>gi|187478977|ref|YP_787001.1| DNA-binding protein [Bordetella avium 197N]
gi|115423563|emb|CAJ50099.1| DNA-binding protein [Bordetella avium 197N]
Length = 105
Score = 41.3 bits (96), Expect = 0.048, Method: Composition-based stats.
Identities = 17/96 (17%), Positives = 33/96 (34%), Gaps = 9/96 (9%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRA---- 57
KS L+ + + + + V+ ++ L + ++ G E G F V +
Sbjct: 9 NKSQLVAHLVENT-GVEAKTVKTVLAGLESAVLGSVDKKGAGEFTLAGLFKVSVQKVPAK 67
Query: 58 -ARLARAPLAQKVISVEEK---MVPFFRAGKNLKER 89
R + P + K + R K LK+
Sbjct: 68 AKRFGKDPFTGEERWFPAKPASVKVKVRPLKKLKDA 103
>gi|114565593|ref|YP_752747.1| hypothetical protein Swol_0017 [Syntrophomonas wolfei subsp. wolfei
str. Goettingen]
gi|114336528|gb|ABI67376.1| hypothetical protein Swol_0017 [Syntrophomonas wolfei subsp. wolfei
str. Goettingen]
Length = 152
Score = 41.3 bits (96), Expect = 0.048, Method: Composition-based stats.
Identities = 13/62 (20%), Positives = 27/62 (43%), Gaps = 1/62 (1%)
Query: 1 MIKSSLIGTIAKK-NPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAAR 59
MIK L IA K P++ ++ + + ++ + +AL R S+S++ +
Sbjct: 46 MIKIDLARAIADKVLPQITQKEADAFLTAFMDIIGEALKKLRRSMPGYLVSYSLQANYLK 105
Query: 60 LA 61
Sbjct: 106 HG 107
>gi|317063466|ref|ZP_07927951.1| predicted protein [Fusobacterium ulcerans ATCC 49185]
gi|313689142|gb|EFS25977.1| predicted protein [Fusobacterium ulcerans ATCC 49185]
Length = 106
Score = 40.9 bits (95), Expect = 0.055, Method: Composition-based stats.
Identities = 17/96 (17%), Positives = 38/96 (39%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M ++ + KK N ++ ++ + + E + +A +V ++ FG+F +K R
Sbjct: 1 MTEAEFLELYKKKRKLKNIKEAKEKLELFWEVIFAGIATERKVIVKDFGTFEAKKLKPRK 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDST 96
+ +E+ FR E +N +
Sbjct: 61 IYDIHKNSLYMTKERTALKFRVKNGFMEIVNKKVNN 96
>gi|262037630|ref|ZP_06011076.1| DNA-binding protein HU-alpha [Leptotrichia goodfellowii F0264]
gi|261748346|gb|EEY35739.1| DNA-binding protein HU-alpha [Leptotrichia goodfellowii F0264]
Length = 55
Score = 40.9 bits (95), Expect = 0.056, Method: Composition-based stats.
Identities = 16/37 (43%), Positives = 21/37 (56%)
Query: 38 ANGGRVEIRGFGSFSVRKRAARLARAPLAQKVISVEE 74
A G V+ G+G+F V+KRAAR R P K I +
Sbjct: 1 AKGETVQFVGWGTFGVQKRAARTGRNPQTGKEIKIAA 37
>gi|296448475|ref|ZP_06890357.1| histone family protein DNA-binding protein [Methylosinus
trichosporium OB3b]
gi|296254027|gb|EFH01172.1| histone family protein DNA-binding protein [Methylosinus
trichosporium OB3b]
Length = 130
Score = 40.9 bits (95), Expect = 0.056, Method: Composition-based stats.
Identities = 23/95 (24%), Positives = 37/95 (38%), Gaps = 10/95 (10%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEI--RGFGSFSVRKRAAR 59
KS+LI +A++N +L + + L E ++ G E G S+RK AR
Sbjct: 32 TKSALINHLAEQN-ELPRKTAAAVYATLEEVFLGSVHPRGVGEFTLPGLLKVSLRKVPAR 90
Query: 60 LA----RAPLAQKVIS---VEEKMVPFFRAGKNLK 87
A R P +++ + R LK
Sbjct: 91 KAGTLVRNPATGEMVKAAAKPASVRVKIRPLSKLK 125
>gi|15604381|ref|NP_220897.1| hypothetical protein RP524 [Rickettsia prowazekii str. Madrid E]
gi|14423682|sp|Q9ZD26|DBHL_RICPR RecName: Full=DNA-binding protein HU-like
gi|3861073|emb|CAA14973.1| unknown [Rickettsia prowazekii]
gi|292572136|gb|ADE30051.1| Integration host factor beta-subunit [Rickettsia prowazekii Rp22]
Length = 80
Score = 40.9 bits (95), Expect = 0.056, Method: Composition-based stats.
Identities = 28/87 (32%), Positives = 47/87 (54%), Gaps = 10/87 (11%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ LI + K L+ QDV++ V+++L+ + ++L R+EIR FG+FS+RKR
Sbjct: 3 TKNYLIDKVHDKLDYLSKQDVKESVDLILDYLNESLKEQKRIEIRNFGNFSIRKRKF--- 59
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKE 88
P + K ++R KNL +
Sbjct: 60 --PESNKFY-----NTVYYRMPKNLFK 79
>gi|190573189|ref|YP_001971034.1| putative histone-like protein [Stenotrophomonas maltophilia K279a]
gi|190011111|emb|CAQ44720.1| putative histone-like protein [Stenotrophomonas maltophilia K279a]
Length = 132
Score = 40.9 bits (95), Expect = 0.058, Method: Composition-based stats.
Identities = 16/96 (16%), Positives = 32/96 (33%), Gaps = 9/96 (9%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRK-----R 56
KS L+ IA+ + + +DV ++ L + ++ G G + +
Sbjct: 36 TKSGLVAHIAEAS-GVVAKDVRAVLASLESAVASSVHKKGAGSFTLPGLLKITTVNVPAK 94
Query: 57 AARLARAPLAQKV---ISVEEKMVPFFRAGKNLKER 89
R P ++ + R K LK+
Sbjct: 95 PKRKGINPFTKEEQWFAAKPATTKLKVRPLKKLKDA 130
>gi|293373582|ref|ZP_06619930.1| putative DNA-binding protein [Bacteroides ovatus SD CMC 3f]
gi|299148373|ref|ZP_07041435.1| putative DNA-binding protein [Bacteroides sp. 3_1_23]
gi|292631407|gb|EFF50037.1| putative DNA-binding protein [Bacteroides ovatus SD CMC 3f]
gi|298513134|gb|EFI37021.1| putative DNA-binding protein [Bacteroides sp. 3_1_23]
Length = 158
Score = 40.9 bits (95), Expect = 0.059, Method: Composition-based stats.
Identities = 17/90 (18%), Positives = 35/90 (38%), Gaps = 3/90 (3%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M + ++ IA + L D++ +++ L+ + + LANG V + GSF
Sbjct: 32 MKQKQIVDQIADRCT-LTGSDIKAVLDALMVVIKRNLANGSPVRLGDLGSFRPSVSGKGT 90
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
A + + + +KE +
Sbjct: 91 EDASKCGASSVKKAR--VIYVPSAEIKEAV 118
>gi|83943258|ref|ZP_00955718.1| DNA-binding protein HU, putative [Sulfitobacter sp. EE-36]
gi|83846266|gb|EAP84143.1| DNA-binding protein HU, putative [Sulfitobacter sp. EE-36]
Length = 121
Score = 40.9 bits (95), Expect = 0.059, Method: Composition-based stats.
Identities = 17/77 (22%), Positives = 36/77 (46%), Gaps = 6/77 (7%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K LI T+ +++ + +D + +V+ +L + +AL++ + + FG V
Sbjct: 36 MRKKELIDTVVERS-GVKKRDAKPVVDAMLAVLGEALSDSRELNLLPFGKLKVINEKE-- 92
Query: 61 ARAPLAQKVISVEEKMV 77
K+I V+ + V
Sbjct: 93 ---LKNGKMIRVKVRQV 106
>gi|186474602|ref|YP_001863573.1| DNA-binding protein HU-alpha [Burkholderia phymatum STM815]
gi|184198561|gb|ACC76523.1| DNA-binding protein HU-alpha [Burkholderia phymatum STM815]
Length = 58
Score = 40.9 bits (95), Expect = 0.061, Method: Composition-based stats.
Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGS 50
M K LI +A + + + ++ +LE +T A+ G V++ GFGS
Sbjct: 1 MNKHELIDAVATSTGE-SKSSTGEAIDAILEAVTAAVTRGETVQLVGFGS 49
>gi|67459159|ref|YP_246783.1| integration host factor beta-subunit [Rickettsia felis URRWXCal2]
gi|67004692|gb|AAY61618.1| Integration host factor beta-subunit [Rickettsia felis URRWXCal2]
Length = 80
Score = 40.9 bits (95), Expect = 0.061, Method: Composition-based stats.
Identities = 27/87 (31%), Positives = 49/87 (56%), Gaps = 10/87 (11%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ LI + K L+ +DV+ V+++L+ ++++L R+EIR FG+FS+RKR
Sbjct: 3 TKNYLIDKVHDKLNYLSKEDVKDSVDLILDYLSRSLKEQERIEIRNFGNFSIRKRKF--- 59
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKE 88
P + K ++ ++R KNL +
Sbjct: 60 --PESNKFYNI-----VYYRMPKNLFK 79
>gi|58425631|gb|AAW74668.1| histone-like protein [Xanthomonas oryzae pv. oryzae KACC10331]
Length = 192
Score = 40.9 bits (95), Expect = 0.066, Method: Composition-based stats.
Identities = 17/95 (17%), Positives = 31/95 (32%), Gaps = 9/95 (9%)
Query: 3 KSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRK-----RA 57
K+ L+ IA+ +L +DV ++ L +L+ G G + +
Sbjct: 97 KTGLVAHIAEST-QLAPKDVRAVLASLEATAHASLSKKGVGTFTIPGMLKLTTVHVPAKP 155
Query: 58 ARLARAPLAQKVIS---VEEKMVPFFRAGKNLKER 89
R P ++ R K LK+
Sbjct: 156 KRKGINPFTKEEQIFAAKPATSKIKSRMMKRLKDA 190
>gi|194364785|ref|YP_002027395.1| histone family protein DNA-binding protein [Stenotrophomonas
maltophilia R551-3]
gi|194347589|gb|ACF50712.1| histone family protein DNA-binding protein [Stenotrophomonas
maltophilia R551-3]
Length = 132
Score = 40.5 bits (94), Expect = 0.069, Method: Composition-based stats.
Identities = 16/96 (16%), Positives = 31/96 (32%), Gaps = 9/96 (9%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRK-----R 56
KS L+ IA+ + + DV ++ L + ++ G G + +
Sbjct: 36 TKSGLVAHIAEASGVIAK-DVRAVLASLESAVASSVHKKGAGSFTLPGLLKISTVNVPAK 94
Query: 57 AARLARAPLAQKV---ISVEEKMVPFFRAGKNLKER 89
R P ++ + R K LK+
Sbjct: 95 PKRKGINPFTKEEQWFAAKPATTKLKVRPLKKLKDA 130
>gi|39938811|ref|NP_950577.1| nucleoid DNA-binding protein [Onion yellows phytoplasma OY-M]
gi|39938851|ref|NP_950617.1| nucleoid DNA-binding protein [Onion yellows phytoplasma OY-M]
gi|39721920|dbj|BAD04410.1| bacterial nucleoid DNA-binding protein [Onion yellows phytoplasma
OY-M]
gi|39721960|dbj|BAD04450.1| bacterial nucleoid DNA-binding protein [Onion yellows phytoplasma
OY-M]
Length = 96
Score = 40.5 bits (94), Expect = 0.070, Method: Composition-based stats.
Identities = 23/90 (25%), Positives = 44/90 (48%), Gaps = 2/90 (2%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRV-EIRGFGSFSVRKRAAR 59
M K LI IA N K + E+ ++ + + +A+ N V G F ++ R +
Sbjct: 1 MTKKELIKKIALSN-KTSVTKTEEFYHIFEKTLIEAITNNEEVVLFPKIGKFKLKSRKSY 59
Query: 60 LARAPLAQKVISVEEKMVPFFRAGKNLKER 89
+ R P +K + + +K V F+ K++K++
Sbjct: 60 IGRNPKTKKKLKIPKKTVVTFKLSKSIKDK 89
>gi|330825266|ref|YP_004388569.1| histone family protein DNA-binding protein [Alicycliphilus
denitrificans K601]
gi|329310638|gb|AEB85053.1| histone family protein DNA-binding protein [Alicycliphilus
denitrificans K601]
Length = 70
Score = 40.5 bits (94), Expect = 0.075, Method: Composition-based stats.
Identities = 11/63 (17%), Positives = 25/63 (39%), Gaps = 1/63 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M ++ L+ +A +N L+ ++ L++ + A+ G + + R
Sbjct: 1 MNRAELVEILASRN-DLSKTAANAVLETLIDTIKTAVKKGDAKRTARTRQSRLTRAGGRS 59
Query: 61 ARA 63
AR
Sbjct: 60 ARD 62
>gi|2944015|gb|AAC05204.1| unknown [Rickettsia rickettsii str. 'Sheila Smith']
Length = 90
Score = 40.5 bits (94), Expect = 0.077, Method: Composition-based stats.
Identities = 22/57 (38%), Positives = 37/57 (64%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRA 57
+ K+ LI I K L+ +DV+ V+++L+ + ++L R+EIR FG+FS+RKR
Sbjct: 2 ITKNYLIDKIHDKLNYLSKEDVKDSVDLILDYLNESLKQQKRIEIRNFGNFSIRKRK 58
>gi|237716546|ref|ZP_04547027.1| conserved hypothetical protein [Bacteroides sp. D1]
gi|262405324|ref|ZP_06081874.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
gi|294644626|ref|ZP_06722379.1| putative DNA-binding protein [Bacteroides ovatus SD CC 2a]
gi|294810174|ref|ZP_06768842.1| putative DNA-binding protein [Bacteroides xylanisolvens SD CC 1b]
gi|229442529|gb|EEO48320.1| conserved hypothetical protein [Bacteroides sp. D1]
gi|262356199|gb|EEZ05289.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
gi|292640063|gb|EFF58328.1| putative DNA-binding protein [Bacteroides ovatus SD CC 2a]
gi|294442638|gb|EFG11437.1| putative DNA-binding protein [Bacteroides xylanisolvens SD CC 1b]
Length = 156
Score = 40.5 bits (94), Expect = 0.077, Method: Composition-based stats.
Identities = 20/96 (20%), Positives = 41/96 (42%), Gaps = 15/96 (15%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSF------SVR 54
M + ++ IA + L D++ +++ L+ + + LANG V + GSF
Sbjct: 32 MKQKQIVDQIADRCT-LTGSDIKAVLDALMVVIKRNLANGSPVRLGDLGSFRPSVSGKGT 90
Query: 55 KRAARLARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
+ A++ SV++ V + +KE +
Sbjct: 91 EDASKCGAN-------SVKKARVIY-VPSTEIKEAV 118
>gi|120613143|ref|YP_972821.1| histone family protein DNA-binding protein [Acidovorax citrulli
AAC00-1]
gi|120591607|gb|ABM35047.1| histone family protein DNA-binding protein [Acidovorax citrulli
AAC00-1]
Length = 155
Score = 40.5 bits (94), Expect = 0.080, Method: Composition-based stats.
Identities = 17/96 (17%), Positives = 35/96 (36%), Gaps = 9/96 (9%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKR----- 56
K+SLI +A++ + + + ++ L + ++ G E G + +
Sbjct: 59 TKTSLIAHLAEQ-AGVEPKAAKAVMAALEAAILGSVHKKGSGEFTLPGLMKIGLQQVPAK 117
Query: 57 AARLARAPLAQKVISVEEK---MVPFFRAGKNLKER 89
R + P + K + RA K LK+
Sbjct: 118 KKRFGKDPFTGEERWFPAKPASVKIKTRALKKLKDA 153
>gi|51473705|ref|YP_067462.1| integration host factor beta subunit [Rickettsia typhi str.
Wilmington]
gi|51460017|gb|AAU03980.1| integration host factor beta subunit [Rickettsia typhi str.
Wilmington]
Length = 80
Score = 40.5 bits (94), Expect = 0.083, Method: Composition-based stats.
Identities = 28/87 (32%), Positives = 47/87 (54%), Gaps = 10/87 (11%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K+ LI + K L+ QDV++ V+++L+ + ++L R+EIR FG+FS+RKR
Sbjct: 3 TKNYLIDKVHDKLNYLSKQDVKESVDLILDYLNESLKEQKRIEIRNFGNFSIRKRKF--- 59
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKE 88
P + K ++R KNL +
Sbjct: 60 --PESNKFY-----NTVYYRMPKNLFK 79
>gi|237742453|ref|ZP_04572934.1| predicted protein [Fusobacterium sp. 4_1_13]
gi|229430101|gb|EEO40313.1| predicted protein [Fusobacterium sp. 4_1_13]
Length = 118
Score = 40.1 bits (93), Expect = 0.090, Method: Composition-based stats.
Identities = 16/90 (17%), Positives = 37/90 (41%), Gaps = 2/90 (2%)
Query: 12 KKNPKLNYQDVEKIVNMLLEEMTQALANGG--RVEIRGFGSFSVRKRAARLARAPLAQKV 69
K + ++ E++ +E + L+N + ++ GSF V ++ R ++V
Sbjct: 23 AKISNFSIEEAEELTKNFIEAIRNTLSNYEIQNILLKRLGSFIVHEQKERSGTLFGKKEV 82
Query: 70 ISVEEKMVPFFRAGKNLKERLNSPDSTLSN 99
++ K F+ +N KE++
Sbjct: 83 VTFPAKKAIKFKFSRNAKEKIEENIKKRKK 112
>gi|330880309|gb|EGH14458.1| HU family DNA-binding protein [Pseudomonas syringae pv.
morsprunorum str. M302280PT]
Length = 66
Score = 40.1 bits (93), Expect = 0.097, Method: Composition-based stats.
Identities = 17/63 (26%), Positives = 24/63 (38%), Gaps = 1/63 (1%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K I IA+ K + L + + L NG + + G G V +R AR
Sbjct: 4 TKDQFIAVIAEAI-DAPKNTTGKALEQLGQIVADQLGNGAEITLPGIGKLKVAERPARTG 62
Query: 62 RAP 64
R P
Sbjct: 63 RHP 65
>gi|189466861|ref|ZP_03015646.1| hypothetical protein BACINT_03242 [Bacteroides intestinalis DSM
17393]
gi|189435125|gb|EDV04110.1| hypothetical protein BACINT_03242 [Bacteroides intestinalis DSM
17393]
Length = 169
Score = 40.1 bits (93), Expect = 0.097, Method: Composition-based stats.
Identities = 22/89 (24%), Positives = 44/89 (49%), Gaps = 8/89 (8%)
Query: 6 LIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLARAPL 65
L I +K+ + DV+ ++ L+EE+ + L NG +V++ FG+F + +A
Sbjct: 40 LAAAI-QKSCAMTKGDVKHVIEALVEEVQENLVNGNKVKLNLFGTFHMTFCCPGVA---- 94
Query: 66 AQKVISVE--EKMVPFFRAGKNLKERLNS 92
+V+ +++ F K LK +N+
Sbjct: 95 TSAECTVKNIKRVNIRFVPDKELK-LVNN 122
>gi|33602348|ref|NP_889908.1| DNA-binding protein Bph2 [Bordetella bronchiseptica RB50]
gi|33576787|emb|CAE33866.1| DNA-binding protein Bph2 [Bordetella bronchiseptica RB50]
Length = 112
Score = 40.1 bits (93), Expect = 0.099, Method: Composition-based stats.
Identities = 18/96 (18%), Positives = 33/96 (34%), Gaps = 9/96 (9%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRA---- 57
KS LI + + + + V+ ++ L + ++ G E G F V +
Sbjct: 16 NKSQLIAYLVENT-GVEAKSVKAVLAGLESSVLASVDKKGAGEFTLPGLFKVAVQKVPAK 74
Query: 58 -ARLARAPLAQKVISVEEK---MVPFFRAGKNLKER 89
R + P + K + R K LK+
Sbjct: 75 AKRFGKDPFTGEERWFPAKPASVKVKVRPLKKLKDA 110
>gi|320012167|gb|ADW07017.1| histone family protein DNA-binding protein [Streptomyces
flavogriseus ATCC 33331]
Length = 87
Score = 40.1 bits (93), Expect = 0.100, Method: Composition-based stats.
Identities = 23/102 (22%), Positives = 37/102 (36%), Gaps = 29/102 (28%)
Query: 1 MIKSSLIGTIAKKNPK---LNYQDVEKIVNMLLEE------MTQALANGGRVEIRGFGSF 51
M +S+LI + ++ L+ + ++V+ L + + L GG V + GFGSF
Sbjct: 1 MDRSALIEAVGRRTAGGGELSADQIGRVVDALFGTVAEAGAIAETLRTGGAVTLVGFGSF 60
Query: 52 SVRKRAARLARAPLAQKVISVEEKMVPFFRAGKNLKERLNSP 93
A R GK L E +N
Sbjct: 61 HQEDGEA--------------------ALRPGKALNEFVNDE 82
>gi|83954391|ref|ZP_00963111.1| DNA-binding protein HU, putative [Sulfitobacter sp. NAS-14.1]
gi|83841428|gb|EAP80598.1| DNA-binding protein HU, putative [Sulfitobacter sp. NAS-14.1]
Length = 121
Score = 40.1 bits (93), Expect = 0.100, Method: Composition-based stats.
Identities = 17/77 (22%), Positives = 36/77 (46%), Gaps = 6/77 (7%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K LI T+ +++ + +D + +V+ +L + +AL++ + + FG V
Sbjct: 36 MRKKELIDTVVERS-GVKKRDAKPVVDAMLAVLGEALSDSRELNLLPFGKLKVINEKE-- 92
Query: 61 ARAPLAQKVISVEEKMV 77
K+I V+ + V
Sbjct: 93 ---LKNGKMIRVKVRQV 106
>gi|212211792|ref|YP_002302728.1| DNA-binding protein [Coxiella burnetii CbuG_Q212]
gi|212010202|gb|ACJ17583.1| bacterial DNA-binding protein [Coxiella burnetii CbuG_Q212]
Length = 78
Score = 40.1 bits (93), Expect = 0.10, Method: Composition-based stats.
Identities = 16/75 (21%), Positives = 28/75 (37%), Gaps = 8/75 (10%)
Query: 24 KIVNMLLEEMTQALANGGRVEIRGFGSFSVRKR-----AARLARAPLAQKVIS---VEEK 75
+++ L + M + L G E G + AR P ++++ +
Sbjct: 3 AVLDELADVMHRHLRKGAAGEFTLPGLVKCTVKRKPATKARKGINPFTGEMMTFKAKPAR 62
Query: 76 MVPFFRAGKNLKERL 90
V RA K LKE +
Sbjct: 63 NVVKVRALKRLKEMV 77
>gi|121593962|ref|YP_985858.1| histone family protein DNA-binding protein [Acidovorax sp. JS42]
gi|120606042|gb|ABM41782.1| histone family protein DNA-binding protein [Acidovorax sp. JS42]
Length = 179
Score = 39.8 bits (92), Expect = 0.12, Method: Composition-based stats.
Identities = 15/96 (15%), Positives = 35/96 (36%), Gaps = 9/96 (9%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRA---- 57
KS+L+ +A+++ + + V+ ++ L + ++ G G + +
Sbjct: 83 TKSALVAHLAEQS-NVEPKAVKAVLAALESAVLGSVHKKGAGAFVLPGLLKIDVQKVPAK 141
Query: 58 -ARLARAPLAQKVIS---VEEKMVPFFRAGKNLKER 89
R P ++ + RA K LK+
Sbjct: 142 PKRKGINPFTKEEQVFAAKPATVRIKARALKKLKDA 177
>gi|323137749|ref|ZP_08072825.1| histone family protein DNA-binding protein [Methylocystis sp. ATCC
49242]
gi|322397046|gb|EFX99571.1| histone family protein DNA-binding protein [Methylocystis sp. ATCC
49242]
Length = 129
Score = 39.8 bits (92), Expect = 0.13, Method: Composition-based stats.
Identities = 23/97 (23%), Positives = 37/97 (38%), Gaps = 10/97 (10%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEI--RGFGSFSVRKRAAR 59
KS+LI IA++N +L + + L ++ G E G ++RK AR
Sbjct: 31 TKSALINLIAEQN-ELPRKTAVGVYATLESVFLGSVHPRGVGEFTLPGLLKVTLRKVPAR 89
Query: 60 LA----RAPLAQKVIS---VEEKMVPFFRAGKNLKER 89
A R P +++ + RA LK
Sbjct: 90 KAGTLVRNPATGEMVKGAAKPASVRVKIRALSKLKNA 126
>gi|224536207|ref|ZP_03676746.1| hypothetical protein BACCELL_01074 [Bacteroides cellulosilyticus
DSM 14838]
gi|224522175|gb|EEF91280.1| hypothetical protein BACCELL_01074 [Bacteroides cellulosilyticus
DSM 14838]
Length = 141
Score = 39.8 bits (92), Expect = 0.14, Method: Composition-based stats.
Identities = 20/83 (24%), Positives = 42/83 (50%), Gaps = 7/83 (8%)
Query: 12 KKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLARAPLAQKVIS 71
+K+ + DV+ ++ L+EE+ + LANG +V++ F +F + +A +
Sbjct: 17 QKSCAMTKGDVKHVIEALVEEVQENLANGNKVKLNQFSTFYMTFCCPGVA----TSAECT 72
Query: 72 VE--EKMVPFFRAGKNLKERLNS 92
V+ +++ F K LK +N+
Sbjct: 73 VKNIKRVNIRFVPDKELK-LVNN 94
>gi|296120328|ref|YP_003628106.1| histone family protein DNA-binding protein [Planctomyces
limnophilus DSM 3776]
gi|296012668|gb|ADG65907.1| histone family protein DNA-binding protein [Planctomyces
limnophilus DSM 3776]
Length = 106
Score = 39.8 bits (92), Expect = 0.14, Method: Composition-based stats.
Identities = 17/97 (17%), Positives = 38/97 (39%), Gaps = 10/97 (10%)
Query: 3 KSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRK-----RA 57
K+ + IA+ L+ +DV+ + L + +++ + G G ++
Sbjct: 11 KTDIFAAIAESTS-LSKKDVQAVFTALNDLISKQVGKKGPGVFAVPGLLKIQVVRKPATK 69
Query: 58 ARLARAP-LAQKVISV---EEKMVPFFRAGKNLKERL 90
A P +++ V + RA K+LK+ +
Sbjct: 70 ATQRANPFKPGEMMVVKAKPARNTVKIRALKSLKDMV 106
>gi|285017827|ref|YP_003375538.1| bacterial DNA-binding protein [Xanthomonas albilineans GPE PC73]
gi|283473045|emb|CBA15550.1| putative bacterial dna-binding protein [Xanthomonas albilineans]
Length = 132
Score = 39.8 bits (92), Expect = 0.14, Method: Composition-based stats.
Identities = 18/95 (18%), Positives = 34/95 (35%), Gaps = 9/95 (9%)
Query: 3 KSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRK-----RA 57
KS+L+ IA+ + +DV ++ L M +++ G G + +A
Sbjct: 37 KSALVAHIAE-TSGVIAKDVRAVMTSLEHAMAGSISKKGAGSFTLPGLLKITSTQVAAKA 95
Query: 58 ARLARAPLAQKV---ISVEEKMVPFFRAGKNLKER 89
R P ++ + R K LK+
Sbjct: 96 KRKGINPFTKEEQWFAAKPATTKLKVRPLKKLKDA 130
>gi|34581629|ref|ZP_00143109.1| integration host factor beta-subunit [Rickettsia sibirica 246]
gi|229586789|ref|YP_002845290.1| Integration host factor beta-subunit [Rickettsia africae ESF-5]
gi|28263014|gb|EAA26518.1| integration host factor beta-subunit [Rickettsia sibirica 246]
gi|228021839|gb|ACP53547.1| Integration host factor beta-subunit [Rickettsia africae ESF-5]
Length = 80
Score = 39.8 bits (92), Expect = 0.14, Method: Composition-based stats.
Identities = 22/57 (38%), Positives = 37/57 (64%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRA 57
+ K+ LI I K L+ +DV+ V+++L+ + ++L R+EIR FG+FS+RKR
Sbjct: 2 ITKNYLIDKIHDKLNYLSKEDVKDSVDLILDYLNESLKKQKRIEIRNFGNFSIRKRK 58
>gi|157964585|ref|YP_001499409.1| integration host factor beta-subunit [Rickettsia massiliae MTU5]
gi|157844361|gb|ABV84862.1| Integration host factor beta-subunit [Rickettsia massiliae MTU5]
Length = 81
Score = 39.8 bits (92), Expect = 0.14, Method: Composition-based stats.
Identities = 26/89 (29%), Positives = 47/89 (52%), Gaps = 10/89 (11%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
+ K+ LI I K L+ +DV+ V+++L+ + ++L R+EIR FG+FS+RKR
Sbjct: 3 ITKNYLIDKIHDKLNYLSKEDVKDSVDLILDYLNESLKEQKRIEIRNFGNFSIRKRKFPE 62
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKER 89
+ + ++R KNL ++
Sbjct: 63 S------EKFY----NTVYYRMPKNLFKK 81
>gi|85057552|ref|YP_456468.1| DNA-binding protein HU [Aster yellows witches'-broom phytoplasma
AYWB]
gi|84789657|gb|ABC65389.1| DNA-binding protein HU [Aster yellows witches'-broom phytoplasma
AYWB]
Length = 122
Score = 39.8 bits (92), Expect = 0.14, Method: Composition-based stats.
Identities = 22/107 (20%), Positives = 39/107 (36%), Gaps = 16/107 (14%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRV-EIRGFGSFSVRKRAAR 59
M K LI +IA+ N K + E+ N + +A+ + V G F ++ R A
Sbjct: 13 MNKKELIKSIAEVN-KTSITQTEEFYNSFENALIKAITSNEEVVLSSKIGKFILKTRKAH 71
Query: 60 LA--------------RAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
+ K + + K V F+ K +K+ +
Sbjct: 72 ITPETKFIINKQTGKKTVKRTGKNLKIPAKTVVSFKMSKPIKDEVKK 118
>gi|157828573|ref|YP_001494815.1| integration host factor beta-subunit [Rickettsia rickettsii str.
'Sheila Smith']
gi|165933287|ref|YP_001650076.1| hypothetical protein RrIowa_0832 [Rickettsia rickettsii str.
Iowa]
gi|238651133|ref|YP_002916075.1| integration host factor beta-subunit [Rickettsia peacockii str.
Rustic]
gi|166214917|sp|O68451|DBHL_RICRS RecName: Full=DNA-binding protein HU-like
gi|157801054|gb|ABV76307.1| integration host factor beta-subunit [Rickettsia rickettsii str.
'Sheila Smith']
gi|165908374|gb|ABY72670.1| hypothetical protein RrIowa_0832 [Rickettsia rickettsii str.
Iowa]
gi|238625231|gb|ACR47937.1| integration host factor beta-subunit [Rickettsia peacockii str.
Rustic]
Length = 80
Score = 39.8 bits (92), Expect = 0.15, Method: Composition-based stats.
Identities = 26/88 (29%), Positives = 46/88 (52%), Gaps = 10/88 (11%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
+ K+ LI I K L+ +DV+ V+++L+ + ++L R+EIR FG+FS+RKR
Sbjct: 2 ITKNYLIDKIHDKLNYLSKEDVKDSVDLILDYLNESLKQQKRIEIRNFGNFSIRKRKFPE 61
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKE 88
+ + ++R KNL +
Sbjct: 62 S------EKFY----NTVYYRMPKNLFK 79
>gi|39939020|ref|NP_950786.1| nucleoid DNA-binding protein [Onion yellows phytoplasma OY-M]
gi|39939184|ref|NP_950950.1| nucleoid DNA-binding protein [Onion yellows phytoplasma OY-M]
gi|39722129|dbj|BAD04619.1| bacterial nucleoid DNA-binding protein [Onion yellows phytoplasma
OY-M]
gi|39722293|dbj|BAD04783.1| bacterial nucleoid DNA-binding protein [Onion yellows phytoplasma
OY-M]
Length = 110
Score = 39.4 bits (91), Expect = 0.16, Method: Composition-based stats.
Identities = 24/109 (22%), Positives = 41/109 (37%), Gaps = 16/109 (14%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANG-GRVEIRGFGSFSVRKRAA- 58
M K LI +IA+KN K + E+ N + +A+ N V G F ++ R A
Sbjct: 1 MTKKELIKSIAEKN-KTSITQTEEFYNSFENAIIKAITNNAEVVLSSKLGKFILKTRKAH 59
Query: 59 -----RLARAPLAQKV--------ISVEEKMVPFFRAGKNLKERLNSPD 94
+ K + + K V F+ K +K+++
Sbjct: 60 LTPETKFIINKRTGKKNAQRTGKNLKIPSKTVVTFKLSKTIKDKVKELK 108
>gi|255693884|ref|ZP_05417559.1| putative integration host factor IHF alpha subunit [Bacteroides
finegoldii DSM 17565]
gi|260620313|gb|EEX43184.1| putative integration host factor IHF alpha subunit [Bacteroides
finegoldii DSM 17565]
Length = 371
Score = 39.4 bits (91), Expect = 0.17, Method: Composition-based stats.
Identities = 7/45 (15%), Positives = 17/45 (37%)
Query: 49 GSFSVRKRAARLARAPLAQKVISVEEKMVPFFRAGKNLKERLNSP 93
+F + +R + + ++ F NL++ +N P
Sbjct: 4 NTFKLIDVDSRESVNVNTGERFQIKGHTKVSFSPDANLRDTINKP 48
>gi|28198762|ref|NP_779076.1| histone-like protein [Xylella fastidiosa Temecula1]
gi|71275828|ref|ZP_00652112.1| Histone-like bacterial DNA-binding protein [Xylella fastidiosa
Dixon]
gi|71898513|ref|ZP_00680684.1| Histone-like bacterial DNA-binding protein [Xylella fastidiosa
Ann-1]
gi|71901883|ref|ZP_00683943.1| Histone-like bacterial DNA-binding protein [Xylella fastidiosa
Ann-1]
gi|170730191|ref|YP_001775624.1| histone-like protein [Xylella fastidiosa M12]
gi|182681454|ref|YP_001829614.1| histone family protein DNA-binding protein [Xylella fastidiosa M23]
gi|28056853|gb|AAO28725.1| histone-like protein [Xylella fastidiosa Temecula1]
gi|71163406|gb|EAO13124.1| Histone-like bacterial DNA-binding protein [Xylella fastidiosa
Dixon]
gi|71728354|gb|EAO30525.1| Histone-like bacterial DNA-binding protein [Xylella fastidiosa
Ann-1]
gi|71731637|gb|EAO33697.1| Histone-like bacterial DNA-binding protein [Xylella fastidiosa
Ann-1]
gi|167964984|gb|ACA11994.1| histone-like protein [Xylella fastidiosa M12]
gi|182631564|gb|ACB92340.1| histone family protein DNA-binding protein [Xylella fastidiosa M23]
gi|307579904|gb|ADN63873.1| histone family protein DNA-binding protein [Xylella fastidiosa
subsp. fastidiosa GB514]
Length = 130
Score = 39.4 bits (91), Expect = 0.18, Method: Composition-based stats.
Identities = 17/95 (17%), Positives = 34/95 (35%), Gaps = 9/95 (9%)
Query: 3 KSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRK-----RA 57
KS+L+ +A+ + L +DV ++ L + +L G G + +
Sbjct: 35 KSALVAHLAESSA-LAAKDVRTLLGALENTIHASLHKKGVGSFTLPGLLKISTVNVPAKP 93
Query: 58 ARLARAPLAQKV---ISVEEKMVPFFRAGKNLKER 89
R P ++ + + R K LK+
Sbjct: 94 KRKGINPFTKEEQWFAAKPASVKIKTRPLKKLKDA 128
>gi|84515538|ref|ZP_01002900.1| hypothetical protein SKA53_02731 [Loktanella vestfoldensis SKA53]
gi|84510821|gb|EAQ07276.1| hypothetical protein SKA53_02731 [Loktanella vestfoldensis SKA53]
Length = 135
Score = 39.4 bits (91), Expect = 0.18, Method: Composition-based stats.
Identities = 13/55 (23%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
Query: 3 KSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRA 57
K L+ +A ++ L +D + ++ L + +ALA G + + G V K
Sbjct: 48 KPDLLDQLATRS-GLKKRDAKLALDATLALIGEALARGDDLLLPPLGRVRVVKAK 101
>gi|255690919|ref|ZP_05414594.1| putative non-specific DNA-binding protein HU-1 [Bacteroides
finegoldii DSM 17565]
gi|260623561|gb|EEX46432.1| putative non-specific DNA-binding protein HU-1 [Bacteroides
finegoldii DSM 17565]
Length = 137
Score = 39.4 bits (91), Expect = 0.18, Method: Composition-based stats.
Identities = 26/92 (28%), Positives = 43/92 (46%), Gaps = 9/92 (9%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVR---KRAA 58
K+ + +A KN L+ D K + M+LE + L NG + + FGSFS+ +
Sbjct: 34 TKA-FVEYLADKN-NLSKGDAYKNLTMVLEGIEAVLKNGNILNLDDFGSFSLNGSFCKDK 91
Query: 59 RLARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
+ A + I + F+A K LK+R+
Sbjct: 92 QPGENHRA-ESIEI---KNVVFKAEKQLKKRI 119
>gi|15892680|ref|NP_360394.1| integration host factor beta-subunit [Rickettsia conorii str.
Malish 7]
gi|20137863|sp|Q92HL4|DBHL_RICCN RecName: Full=DNA-binding protein HU-like
gi|15619852|gb|AAL03295.1| integration host factor beta-subunit [Rickettsia conorii str.
Malish 7]
Length = 80
Score = 39.4 bits (91), Expect = 0.19, Method: Composition-based stats.
Identities = 22/57 (38%), Positives = 37/57 (64%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRA 57
+ K+ LI I K L+ +DV+ V+++L+ + ++L R+EIR FG+FS+RKR
Sbjct: 2 ITKNYLIDKIHDKLNCLSKEDVKDSVDLILDYLNESLKKQKRIEIRNFGNFSIRKRK 58
>gi|295700076|ref|YP_003607969.1| histone family protein DNA-binding protein [Burkholderia sp.
CCGE1002]
gi|295439289|gb|ADG18458.1| histone family protein DNA-binding protein [Burkholderia sp.
CCGE1002]
Length = 150
Score = 39.0 bits (90), Expect = 0.20, Method: Composition-based stats.
Identities = 17/96 (17%), Positives = 34/96 (35%), Gaps = 9/96 (9%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKR----- 56
K+SL IA++ + + + ++ L + + + G E G + +
Sbjct: 53 TKASLAAHIAERAA-VEPKTAKAVLAALEDTILGTVHKKGAGEFTLSGLLKIVVQAVPAK 111
Query: 57 AARLARAPLAQKVISVEEK---MVPFFRAGKNLKER 89
R + P + K + RA K LK+
Sbjct: 112 KKRFGKDPFTGEERWFPAKPASVRIKARALKKLKDA 147
>gi|327197774|ref|YP_004301472.1| gp139 [Brochothrix phage A9]
gi|299810374|gb|ADJ53173.1| gp139 [Brochothrix phage A9]
Length = 93
Score = 39.0 bits (90), Expect = 0.21, Method: Composition-based stats.
Identities = 16/77 (20%), Positives = 30/77 (38%)
Query: 6 LIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLARAPL 65
L I KK P LN +D+ + + + + + L +G V++ + A L
Sbjct: 8 LARDIRKKLPHLNQKDIVATILAMNDVIVEHLEDGDDVKLHKLLKLTNEVSKEHRAYNGL 67
Query: 66 AQKVISVEEKMVPFFRA 82
+++ EK V
Sbjct: 68 SKEYYIKPEKPVIKISP 84
>gi|262037516|ref|ZP_06010975.1| DNA-binding protein HU [Leptotrichia goodfellowii F0264]
gi|261748446|gb|EEY35826.1| DNA-binding protein HU [Leptotrichia goodfellowii F0264]
Length = 57
Score = 39.0 bits (90), Expect = 0.22, Method: Composition-based stats.
Identities = 16/37 (43%), Positives = 21/37 (56%)
Query: 38 ANGGRVEIRGFGSFSVRKRAARLARAPLAQKVISVEE 74
A G V+ G+G+F V+KRAAR R P K I +
Sbjct: 1 AKGETVQFVGWGTFGVQKRAARKGRNPQTGKEIKIAA 37
>gi|255961253|ref|YP_003097811.1| bacterial nucleoid DNA-binding protein [Onion yellows phytoplasma
OY-M]
gi|162809323|dbj|BAF95568.1| bacterial nucleoid DNA-binding protein [Onion yellows phytoplasma
OY-M]
Length = 110
Score = 39.0 bits (90), Expect = 0.23, Method: Composition-based stats.
Identities = 22/107 (20%), Positives = 39/107 (36%), Gaps = 16/107 (14%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRV-EIRGFGSFSVRKRAA- 58
M K LI +IA+ N K + E+ N + +A+ + V G F ++ R A
Sbjct: 1 MNKKELIKSIAEVN-KTSITQTEEFYNSFENALIKAITSNEEVVLSSKIGKFILKTRKAH 59
Query: 59 -----RLARAPLAQKV--------ISVEEKMVPFFRAGKNLKERLNS 92
+ K + + K V F+ K +K+ +
Sbjct: 60 TTPETKFIINKQTGKKTGKRTGKNLKIPAKTVVSFKMSKPIKDEVKK 106
>gi|315919280|ref|ZP_07915520.1| conserved hypothetical protein [Bacteroides sp. D2]
gi|313693155|gb|EFS29990.1| conserved hypothetical protein [Bacteroides sp. D2]
Length = 212
Score = 39.0 bits (90), Expect = 0.24, Method: Composition-based stats.
Identities = 27/89 (30%), Positives = 37/89 (41%), Gaps = 3/89 (3%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
K L+ I + L+ DV + L E+ Q L G +V I G G V
Sbjct: 34 TKK-LVYRIHDRCS-LSPSDVTATLEELKYEVAQCLKEGKKVHIDGLGYLQVTLSCEEEI 91
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R P ++V V+ K F+A K LK L
Sbjct: 92 RDPKDKRVHKVKLK-AIKFKADKELKAEL 119
>gi|289829537|ref|ZP_06547133.1| integration host factor subunit alpha [Salmonella enterica subsp.
enterica serovar Typhi str. E98-3139]
Length = 50
Score = 38.6 bits (89), Expect = 0.26, Method: Composition-based stats.
Identities = 14/47 (29%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGF 48
K+ + + K L+ +D +++V + EE+ +AL NG +V++ GF
Sbjct: 4 TKAEMSEYLFDKL-GLSKRDAKELVELFFEEIRRALENGEQVKLSGF 49
>gi|85057472|ref|YP_456388.1| DNA-binding protein HU [Aster yellows witches'-broom phytoplasma
AYWB]
gi|84789577|gb|ABC65309.1| DNA-binding protein HU [Aster yellows witches'-broom phytoplasma
AYWB]
Length = 110
Score = 38.6 bits (89), Expect = 0.27, Method: Composition-based stats.
Identities = 22/107 (20%), Positives = 39/107 (36%), Gaps = 16/107 (14%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRV-EIRGFGSFSVRKRAAR 59
M K LI +IA+ N K + E+ N + +A+ + V G F ++ R A
Sbjct: 1 MNKKELIKSIAEVN-KTSITQTEEFYNSFENALIKAITSNEEVVLSSKIGKFILKTRKAH 59
Query: 60 LA--------------RAPLAQKVISVEEKMVPFFRAGKNLKERLNS 92
+ K + + K V F+ K +K+ +
Sbjct: 60 ITPETKFIINKQTGKKTVKRTGKNLKIPAKTVVSFKMSKPIKDEVKK 106
>gi|186473326|ref|YP_001860668.1| histone family protein DNA-binding protein [Burkholderia phymatum
STM815]
gi|184195658|gb|ACC73622.1| histone family protein DNA-binding protein [Burkholderia phymatum
STM815]
Length = 150
Score = 38.6 bits (89), Expect = 0.27, Method: Composition-based stats.
Identities = 16/96 (16%), Positives = 35/96 (36%), Gaps = 9/96 (9%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKR----- 56
K+SL +A++ + + + ++ L + + ++ G E G + +
Sbjct: 53 TKASLAAHVAER-AGVEPKSAKAVLAALEDTILGSVHKKGAGEFTLSGLLKIVVQAVPAK 111
Query: 57 AARLARAPLAQKVISVEEK---MVPFFRAGKNLKER 89
R + P + K + RA K LK+
Sbjct: 112 KKRFGKDPFTGQERWFPAKPASVRIKARALKKLKDA 147
>gi|281424532|ref|ZP_06255445.1| putative integration host factor subunit alpha [Prevotella oris
F0302]
gi|281401369|gb|EFB32200.1| putative integration host factor subunit alpha [Prevotella oris
F0302]
Length = 98
Score = 38.6 bits (89), Expect = 0.30, Method: Composition-based stats.
Identities = 22/83 (26%), Positives = 39/83 (46%), Gaps = 2/83 (2%)
Query: 5 SLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA-RA 63
L+ AK+ L+ + + + + LL +++ + +G + + FGSF +R +
Sbjct: 10 DLLRK-AKERSGLSQEILRQSLRALLGAISEVMDDGNNIALDNFGSFELRTVKEHIVTPP 68
Query: 64 PLAQKVISVEEKMVPFFRAGKNL 86
P I V E V FRA KN+
Sbjct: 69 PPNNTPIVVPEHQVVRFRAYKNI 91
>gi|167566381|ref|ZP_02359297.1| histone family protein DNA-binding protein [Burkholderia
oklahomensis EO147]
gi|167573495|ref|ZP_02366369.1| histone family protein DNA-binding protein [Burkholderia
oklahomensis C6786]
Length = 117
Score = 38.6 bits (89), Expect = 0.31, Method: Composition-based stats.
Identities = 18/96 (18%), Positives = 36/96 (37%), Gaps = 9/96 (9%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKR----- 56
K+SL IA++ ++ + V+ ++ L + ++ G E G + +
Sbjct: 21 TKASLAAHIAER-AEVELKAVKAVLTALENAILGSIHKKGAGEFTLPGLLKISAQAVPAK 79
Query: 57 AARLARAPLAQKVISVEEK---MVPFFRAGKNLKER 89
R + P + K + RA K LK+
Sbjct: 80 KKRFGKDPFTGEERWFPAKPASVRVKARALKKLKDA 115
>gi|212217925|ref|YP_002304712.1| DNA-binding protein [Coxiella burnetii CbuK_Q154]
gi|212012187|gb|ACJ19567.1| bacterial DNA-binding protein [Coxiella burnetii CbuK_Q154]
Length = 78
Score = 38.2 bits (88), Expect = 0.33, Method: Composition-based stats.
Identities = 16/73 (21%), Positives = 27/73 (36%), Gaps = 8/73 (10%)
Query: 24 KIVNMLLEEMTQALANGGRVEIRGFGSFSVRKR-----AARLARAPLAQKVIS---VEEK 75
+++ L + M + L G E G + AR P ++++ +
Sbjct: 3 AVLDELADVMHRHLRKGAAGEFTLPGLVKCTVKRKPATKARKGINPFTGEMMTFKAKPAR 62
Query: 76 MVPFFRAGKNLKE 88
V RA K LKE
Sbjct: 63 NVVKVRALKRLKE 75
>gi|270294809|ref|ZP_06201010.1| conserved hypothetical protein [Bacteroides sp. D20]
gi|270274056|gb|EFA19917.1| conserved hypothetical protein [Bacteroides sp. D20]
Length = 207
Score = 38.2 bits (88), Expect = 0.38, Method: Composition-based stats.
Identities = 21/96 (21%), Positives = 36/96 (37%), Gaps = 8/96 (8%)
Query: 4 SSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLARA 63
+ L I ++ L DV +++ L M + LA G +V + G G F +
Sbjct: 36 AELRRRIQERCS-LTKTDVSAVLDALSHVMGEDLAEGRQVHLDGIGYFHPVL----TSTE 90
Query: 64 PLAQKVISVEEK---MVPFFRAGKNLKERLNSPDST 96
P+ K FRA + LK + + +
Sbjct: 91 PVTAATKRKTTKIKLKGIKFRADQVLKNEIGAIKAK 126
>gi|255264224|ref|ZP_05343566.1| DNA-binding protein HU, putative [Thalassiobium sp. R2A62]
gi|255106559|gb|EET49233.1| DNA-binding protein HU, putative [Thalassiobium sp. R2A62]
Length = 153
Score = 38.2 bits (88), Expect = 0.40, Method: Composition-based stats.
Identities = 15/60 (25%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K L+ + +++ + +DV+ V L + +ALA G + I+ G V + R
Sbjct: 67 MKKKDLMDRVVERS-GMKKKDVKPAVEAALAVIGEALAAGEEMNIQPLGKIMVNREKDRP 125
>gi|237719825|ref|ZP_04550306.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
gi|229451094|gb|EEO56885.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
Length = 95
Score = 38.2 bits (88), Expect = 0.40, Method: Composition-based stats.
Identities = 14/53 (26%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSV 53
M + ++ IA + L D++ +++ L+ + + LANG V + GSF
Sbjct: 32 MKQKQIVDQIADRCT-LTGSDIKAVLDALMVVIKRNLANGSPVRLGDLGSFRP 83
>gi|209522053|ref|ZP_03270709.1| histone family protein DNA-binding protein [Burkholderia sp. H160]
gi|209497516|gb|EDZ97715.1| histone family protein DNA-binding protein [Burkholderia sp. H160]
Length = 150
Score = 37.8 bits (87), Expect = 0.44, Method: Composition-based stats.
Identities = 17/96 (17%), Positives = 34/96 (35%), Gaps = 9/96 (9%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKR----- 56
K+SL IA++ + + + ++ L + + + G E G + +
Sbjct: 53 TKASLAAHIAERAA-VEPKTAKAVLAALEDTILGTVHKKGAGEFTLSGLLKIVVQAVPAK 111
Query: 57 AARLARAPLAQKVISVEEK---MVPFFRAGKNLKER 89
R + P + K + RA K LK+
Sbjct: 112 KKRFGKDPFTGEERWFPAKPASVRIKARALKKLKDA 147
>gi|325915087|ref|ZP_08177415.1| putative DNA-binding protein [Xanthomonas vesicatoria ATCC 35937]
gi|325538699|gb|EGD10367.1| putative DNA-binding protein [Xanthomonas vesicatoria ATCC 35937]
Length = 140
Score = 37.8 bits (87), Expect = 0.45, Method: Composition-based stats.
Identities = 17/95 (17%), Positives = 32/95 (33%), Gaps = 9/95 (9%)
Query: 3 KSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRK-----RA 57
K+ L+ IA+ +L +DV ++ L +L+ G G + +
Sbjct: 45 KTGLVAHIAE-TTQLAPKDVRAVLATLESAAHSSLSKKGAGSFTLPGMLKLTSVHVPAKP 103
Query: 58 ARLARAPLAQKVIS---VEEKMVPFFRAGKNLKER 89
R P ++ + R K LK+
Sbjct: 104 KRKGINPFTKEEQTFAAKPASFKVKARLLKKLKDA 138
>gi|187919157|ref|YP_001888188.1| histone family protein DNA-binding protein [Burkholderia
phytofirmans PsJN]
gi|187717595|gb|ACD18818.1| histone family protein DNA-binding protein [Burkholderia
phytofirmans PsJN]
Length = 150
Score = 37.8 bits (87), Expect = 0.50, Method: Composition-based stats.
Identities = 16/96 (16%), Positives = 35/96 (36%), Gaps = 9/96 (9%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKR----- 56
K+SL +A++ + + + ++ L + + A+ G E G + +
Sbjct: 53 TKASLAAHVAERAA-VEPKTAKAVLAALEDTILGAVHKKGAGEFTLSGLLKIVVQAVPAK 111
Query: 57 AARLARAPLAQKVISVEEK---MVPFFRAGKNLKER 89
R + P + + K + R K LK+
Sbjct: 112 KKRFGKDPFSGEERWFPAKPASVRIKARPLKKLKDA 147
>gi|256845789|ref|ZP_05551247.1| predicted protein [Fusobacterium sp. 3_1_36A2]
gi|256719348|gb|EEU32903.1| predicted protein [Fusobacterium sp. 3_1_36A2]
Length = 111
Score = 37.8 bits (87), Expect = 0.53, Method: Composition-based stats.
Identities = 16/84 (19%), Positives = 36/84 (42%), Gaps = 2/84 (2%)
Query: 12 KKNPKLNYQDVEKIVNMLLEEMTQALANGG--RVEIRGFGSFSVRKRAARLARAPLAQKV 69
K + + E++ +E + L+N + ++ GSF V ++ R ++V
Sbjct: 16 AKISNFSIEKAEELTKNFIEAIRNTLSNYEIQNILLKRLGSFIVHEQKERNGTLFGKKEV 75
Query: 70 ISVEEKMVPFFRAGKNLKERLNSP 93
++ K F+ +N KE++
Sbjct: 76 VTFPAKKAIKFKFSRNAKEKIEEN 99
>gi|283781927|ref|YP_003372682.1| DNA-binding protein [Pirellula staleyi DSM 6068]
gi|283440380|gb|ADB18822.1| DNA-binding protein [Pirellula staleyi DSM 6068]
Length = 107
Score = 37.8 bits (87), Expect = 0.56, Method: Composition-based stats.
Identities = 23/97 (23%), Positives = 36/97 (37%), Gaps = 10/97 (10%)
Query: 3 KSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANG--GRVEIRGFGSFSVRKRAARL 60
KS ++ IA L + + + L E+ +AL G +I G + A+
Sbjct: 12 KSEVMANIATAT-GLTKKQITTVFEALTAEIGKALGKKGPGAFQIPGLCKIVRKHVPAKK 70
Query: 61 AR----APLAQKVISVEEK---MVPFFRAGKNLKERL 90
A+ L KV K RA K+LK +
Sbjct: 71 AQKGVLNRLTGKVEDRPAKPASTTVRVRALKSLKSMV 107
>gi|157325091|ref|YP_001468516.1| gp136 [Listeria phage A511]
gi|66732779|gb|AAY53370.1| gp67 [Listeria phage P100]
gi|66733099|gb|AAY52917.1| gp136 [Listeria phage A511]
Length = 104
Score = 37.4 bits (86), Expect = 0.57, Method: Composition-based stats.
Identities = 18/98 (18%), Positives = 43/98 (43%), Gaps = 3/98 (3%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANG-GRVEIRGFGSFSVRKRAAR 59
+ ++ + +A++ +DVE+I+ + AL G +++ V + A+
Sbjct: 6 INRTDIAREVAQRT-GFYIKDVEQILAERDTVIIDALQGGVTKIKEHKLYQIEVETKPAK 64
Query: 60 L-ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDST 96
A L + S+ EK + F+ ++E ++S +
Sbjct: 65 KNAWNGLDKVYFSIPEKKIIKFKPLVAVEEVIDSLNKK 102
>gi|253572295|ref|ZP_04849698.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
gi|251838070|gb|EES66158.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
Length = 205
Score = 37.4 bits (86), Expect = 0.57, Method: Composition-based stats.
Identities = 20/93 (21%), Positives = 40/93 (43%), Gaps = 6/93 (6%)
Query: 3 KSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLAR 62
K I +++ P + +E ++ +++E+ +ALA+G VE+ G FS+ +
Sbjct: 34 KKDFIERVSRHQP-FPHNIIEGVLGAVVDELAEALADGYIVELGELGHFSISLKCTHKVM 92
Query: 63 APLAQKVISVEEKM--VPFFRAGKNLKERLNSP 93
+K I E R K K+++
Sbjct: 93 ---TKKEIRAESIRFDNVHLRTSKEFKKKIKRE 122
>gi|91779334|ref|YP_554542.1| Bph2 [Burkholderia xenovorans LB400]
gi|296157052|ref|ZP_06839889.1| histone family protein DNA-binding protein [Burkholderia sp. Ch1-1]
gi|91691994|gb|ABE35192.1| DNA-binding protein BpH2 [Burkholderia xenovorans LB400]
gi|295892938|gb|EFG72719.1| histone family protein DNA-binding protein [Burkholderia sp. Ch1-1]
Length = 150
Score = 37.4 bits (86), Expect = 0.58, Method: Composition-based stats.
Identities = 16/96 (16%), Positives = 35/96 (36%), Gaps = 9/96 (9%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKR----- 56
K+SL +A++ + + + ++ L + + A+ G E G + +
Sbjct: 53 TKASLAAHVAERAA-VEPKTAKAVLAALEDTILGAVHKKGAGEFTLSGLLKIVVQAVPAK 111
Query: 57 AARLARAPLAQKVISVEEK---MVPFFRAGKNLKER 89
R + P + + K + R K LK+
Sbjct: 112 KKRFGKDPFSGEERWFPAKPASVRIKARPLKKLKDA 147
>gi|229076719|ref|ZP_04209639.1| hypothetical protein bcere0024_54270 [Bacillus cereus Rock4-18]
gi|228706381|gb|EEL58634.1| hypothetical protein bcere0024_54270 [Bacillus cereus Rock4-18]
Length = 49
Score = 37.4 bits (86), Expect = 0.58, Method: Composition-based stats.
Identities = 6/45 (13%), Positives = 14/45 (31%)
Query: 39 NGGRVEIRGFGSFSVRKRAARLARAPLAQKVISVEEKMVPFFRAG 83
+ V++ A R P + + + +P F+
Sbjct: 5 RRKSTVTWFLRTSEVQELAERNGHNPKTGEAMKILPSKLPGFKIS 49
>gi|166367748|ref|YP_001660021.1| selenide water dikinase [Microcystis aeruginosa NIES-843]
gi|166090121|dbj|BAG04829.1| selenide water dikinase [Microcystis aeruginosa NIES-843]
Length = 377
Score = 37.4 bits (86), Expect = 0.61, Method: Composition-based stats.
Identities = 13/33 (39%), Positives = 22/33 (66%), Gaps = 2/33 (6%)
Query: 68 KVISVEEKMVPFFRAG--KNLKERLNSPDSTLS 98
K ++ K VP FR G + LK+ +N+P++TL+
Sbjct: 121 KEYTIPAKPVPIFREGWQEILKKAVNNPNNTLN 153
>gi|224537892|ref|ZP_03678431.1| hypothetical protein BACCELL_02779 [Bacteroides cellulosilyticus
DSM 14838]
gi|224520488|gb|EEF89593.1| hypothetical protein BACCELL_02779 [Bacteroides cellulosilyticus
DSM 14838]
Length = 215
Score = 37.4 bits (86), Expect = 0.61, Method: Composition-based stats.
Identities = 20/91 (21%), Positives = 39/91 (42%), Gaps = 8/91 (8%)
Query: 5 SLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLARAP 64
+ I K++ L DV +++ L M + L+ G +V + G G F ++ +
Sbjct: 39 EIRRKIQKRSS-LTETDVSAVLDALSHVMGEELSEGRQVHLDGIGYFYPTLKSEKGI--- 94
Query: 65 LAQKVISVEEK---MVPFFRAGKNLKERLNS 92
++ EK FRA + LK+ + +
Sbjct: 95 -TRETDRKNEKVRLKGIKFRADRALKDEVGN 124
>gi|325925539|ref|ZP_08186927.1| putative DNA-binding protein [Xanthomonas perforans 91-118]
gi|325544043|gb|EGD15438.1| putative DNA-binding protein [Xanthomonas perforans 91-118]
Length = 141
Score = 37.4 bits (86), Expect = 0.62, Method: Composition-based stats.
Identities = 17/95 (17%), Positives = 31/95 (32%), Gaps = 9/95 (9%)
Query: 3 KSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRK-----RA 57
K+ L+ IA+ +L +DV ++ L +L+ G G + +
Sbjct: 46 KTGLVAHIAEST-QLAPKDVRAVLASLEATAHASLSKKGVGSFTIPGMLKLTTVHVPAKP 104
Query: 58 ARLARAPLAQKVIS---VEEKMVPFFRAGKNLKER 89
R P ++ R K LK+
Sbjct: 105 KRKGINPFTKEEQMFAAKPATTKLKSRPLKKLKDA 139
>gi|297520878|ref|ZP_06939264.1| transcriptional regulator HU subunit alpha [Escherichia coli
OP50]
Length = 29
Score = 37.4 bits (86), Expect = 0.63, Method: Composition-based stats.
Identities = 10/29 (34%), Positives = 14/29 (48%)
Query: 63 APLAQKVISVEEKMVPFFRAGKNLKERLN 91
P K I + VP F +GK LK+ +
Sbjct: 1 NPQTGKEIKIAAANVPAFVSGKALKDAVK 29
>gi|154495134|ref|ZP_02034139.1| hypothetical protein PARMER_04181 [Parabacteroides merdae ATCC
43184]
gi|154085684|gb|EDN84729.1| hypothetical protein PARMER_04181 [Parabacteroides merdae ATCC
43184]
Length = 128
Score = 37.4 bits (86), Expect = 0.65, Method: Composition-based stats.
Identities = 28/94 (29%), Positives = 42/94 (44%), Gaps = 8/94 (8%)
Query: 8 GTIAKKNPK---LNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLARAP 64
+A++ +Y +V+ +V L + +AL G V I G G+FSV R R P
Sbjct: 35 DALAEQIAGSSTFSYGEVKGLVENLTILIAEALEGGNTVTIDGLGTFSVTARPNREVEDP 94
Query: 65 LA--QKVISVEEKMVPFFRAGKNLKERLNSPDST 96
L + I + F+ LKERL S + T
Sbjct: 95 LKIRAESIKL---KGIGFKPSPKLKERLRSIEFT 125
>gi|295086370|emb|CBK67893.1| DNA-binding protein, histone-like, putative [Bacteroides
xylanisolvens XB1A]
Length = 156
Score = 37.4 bits (86), Expect = 0.66, Method: Composition-based stats.
Identities = 19/93 (20%), Positives = 39/93 (41%), Gaps = 15/93 (16%)
Query: 4 SSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVR------KRA 57
++ IA + L D++ +++ L+ + + LANG V + GSF + A
Sbjct: 35 KQIVEQIADRCT-LTGSDIKAVLDALMTVIKRNLANGSPVRLGDLGSFRPSVSGKGLEDA 93
Query: 58 ARLARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
++ SV++ V + +KE +
Sbjct: 94 SKCGAN-------SVKKARVIY-VPSTEIKEAV 118
>gi|260892769|ref|YP_003238866.1| hypothetical protein Adeg_0877 [Ammonifex degensii KC4]
gi|260864910|gb|ACX52016.1| hypothetical protein Adeg_0877 [Ammonifex degensii KC4]
Length = 140
Score = 37.4 bits (86), Expect = 0.68, Method: Composition-based stats.
Identities = 18/92 (19%), Positives = 35/92 (38%), Gaps = 14/92 (15%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDV-EKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAAR 59
M + L +A + +DV E ++ + + L G+V ++G G F + +
Sbjct: 1 MKTAELC-RLAAEKGGYWKKDVRECLLVHFPAALVEGLKRDGKVRLKGVGVFFLASPPGK 59
Query: 60 LARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
++ + FR L +RLN
Sbjct: 60 R------REGVY------VRFRPSSLLLKRLN 79
>gi|29346834|ref|NP_810337.1| hypothetical protein BT_1424 [Bacteroides thetaiotaomicron
VPI-5482]
gi|29338731|gb|AAO76531.1| Histone-like bacterial DNA-binding protein [Bacteroides
thetaiotaomicron VPI-5482]
Length = 205
Score = 37.1 bits (85), Expect = 0.77, Method: Composition-based stats.
Identities = 20/93 (21%), Positives = 40/93 (43%), Gaps = 6/93 (6%)
Query: 3 KSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLAR 62
K I +++ P + +E ++ +++E+ +ALA+G VE+ G FS+ +
Sbjct: 34 KKDFIERVSRHQP-FPHNIIEGVLGAVVDELAEALADGYIVELGELGHFSISLKCTHKVM 92
Query: 63 APLAQKVISVEEKM--VPFFRAGKNLKERLNSP 93
+K I E R K K+++
Sbjct: 93 ---TKKEIRAESIRFDNVHLRTSKEFKKKIKRE 122
>gi|217069514|gb|ACJ83244.1| Rv2986c antigen [Mycobacterium tuberculosis]
Length = 152
Score = 37.1 bits (85), Expect = 0.80, Method: Composition-based stats.
Identities = 8/27 (29%), Positives = 12/27 (44%)
Query: 64 PLAQKVISVEEKMVPFFRAGKNLKERL 90
P + + V+ VP FR G K +
Sbjct: 1 PRTGETVKVKPTSVPAFRPGAQFKAVV 27
>gi|298386519|ref|ZP_06996075.1| conserved hypothetical protein [Bacteroides sp. 1_1_14]
gi|298260896|gb|EFI03764.1| conserved hypothetical protein [Bacteroides sp. 1_1_14]
Length = 205
Score = 37.1 bits (85), Expect = 0.82, Method: Composition-based stats.
Identities = 20/93 (21%), Positives = 40/93 (43%), Gaps = 6/93 (6%)
Query: 3 KSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLAR 62
K I +++ P + +E ++ +++E+ +ALA+G VE+ G FS+ +
Sbjct: 34 KKDFIERVSRHQP-FPHNIIEGVLGAVVDELAEALADGYIVELGELGHFSISLKCTHKVM 92
Query: 63 APLAQKVISVEEKM--VPFFRAGKNLKERLNSP 93
+K I E R K K+++
Sbjct: 93 ---TKKEIRAESIRFDNVHLRTSKEFKKKIKRE 122
>gi|254253671|ref|ZP_04946988.1| hypothetical protein BDAG_02949 [Burkholderia dolosa AUO158]
gi|124898316|gb|EAY70159.1| hypothetical protein BDAG_02949 [Burkholderia dolosa AUO158]
Length = 159
Score = 37.1 bits (85), Expect = 0.82, Method: Composition-based stats.
Identities = 18/96 (18%), Positives = 35/96 (36%), Gaps = 9/96 (9%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKR----- 56
K+SL IA++ + + V+ ++ L + ++ G E G + +
Sbjct: 63 TKASLAAHIAERAA-VEVKAVKAVLAALENVVLGSVHKKGAGEFTLPGLLKITAQVVPAK 121
Query: 57 AARLARAPLAQKVISVEEK---MVPFFRAGKNLKER 89
R + P + K + RA K LK+
Sbjct: 122 KKRFGKDPFTGEERWFPAKPASVRVKARALKKLKDA 157
>gi|260171450|ref|ZP_05757862.1| putative non-specific DNA-binding protein HU-1 [Bacteroides sp. D2]
gi|315919765|ref|ZP_07916005.1| conserved hypothetical protein [Bacteroides sp. D2]
gi|313693640|gb|EFS30475.1| conserved hypothetical protein [Bacteroides sp. D2]
Length = 137
Score = 37.1 bits (85), Expect = 0.87, Method: Composition-based stats.
Identities = 23/92 (25%), Positives = 40/92 (43%), Gaps = 9/92 (9%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVR---KRAA 58
K+ + +A KN + D + ++M+LE + L +G + + FGSFS+
Sbjct: 34 TKA-FVEYLADKN-NITKGDAYRNLSMILEGIEAILKDGNILNLDDFGSFSLNGSFCEDK 91
Query: 59 RLARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
A + I V F+A K LK+ +
Sbjct: 92 EPGENHRA-ESIEV---KNVVFKAEKRLKKAI 119
>gi|221196919|ref|ZP_03569966.1| histone H1 homolog BpH2 [Burkholderia multivorans CGD2M]
gi|221203589|ref|ZP_03576608.1| histone H1 homolog BpH2 [Burkholderia multivorans CGD2]
gi|221177523|gb|EEE09951.1| histone H1 homolog BpH2 [Burkholderia multivorans CGD2]
gi|221183473|gb|EEE15873.1| histone H1 homolog BpH2 [Burkholderia multivorans CGD2M]
Length = 158
Score = 37.1 bits (85), Expect = 0.87, Method: Composition-based stats.
Identities = 18/96 (18%), Positives = 35/96 (36%), Gaps = 9/96 (9%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKR----- 56
K+SL IA++ + + V+ ++ L + ++ G E G + +
Sbjct: 62 TKASLAAHIAERAA-VEVKAVKAVLAALENVVLGSIHKKGAGEFTLPGLLKITAQAVPAK 120
Query: 57 AARLARAPLAQKVISVEEK---MVPFFRAGKNLKER 89
R + P + K + RA K LK+
Sbjct: 121 KKRFGKDPFTGEERWFPAKPATVRVKARALKKLKDA 156
>gi|325855016|ref|ZP_08171732.1| putative DNA-binding protein [Prevotella denticola CRIS 18C-A]
gi|325483994|gb|EGC86934.1| putative DNA-binding protein [Prevotella denticola CRIS 18C-A]
Length = 202
Score = 37.1 bits (85), Expect = 0.90, Method: Composition-based stats.
Identities = 21/84 (25%), Positives = 35/84 (41%), Gaps = 2/84 (2%)
Query: 12 KKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLARAPLAQK-VI 70
+ + L + D+ V L +E+ L +G V + G G FS+ + P + +
Sbjct: 40 EHSTSLTHADLLGAVRALNDEVAHQLMSGNAVHLPGLGYFSLA-VKGDIYEDPRSHHYRL 98
Query: 71 SVEEKMVPFFRAGKNLKERLNSPD 94
E FR +KERL S +
Sbjct: 99 HNPEVRTVKFRPDAEMKERLRSTE 122
>gi|254777677|ref|ZP_05219193.1| bacterial nucleoid DNA-binding protein [Mycobacterium avium
subsp. avium ATCC 25291]
Length = 43
Score = 37.1 bits (85), Expect = 0.90, Method: Composition-based stats.
Identities = 8/42 (19%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGR 42
M + L+ +A+++ V +++ L E T + G +
Sbjct: 3 MNRKELVAAVAERSGN-TQAAVSDVLDALFEVFTAQVKKGEK 43
>gi|158079356|ref|YP_001504169.1| putative integration host factor [Enterococcus phage phiEF24C]
gi|157890200|dbj|BAF81328.1| putative integration host factor [Enterococcus phage phiEF24C]
Length = 103
Score = 37.1 bits (85), Expect = 0.94, Method: Composition-based stats.
Identities = 20/96 (20%), Positives = 45/96 (46%), Gaps = 1/96 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
+ ++ + TI+ + +D+ KI+ + E + QA++ G V+ +++K+ ++
Sbjct: 7 INRTDIARTIS-HHTGYRMKDILKILEIEDEVVAQAVSQGISVKNHKLWKLNIKKKPEKV 65
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDST 96
A + K EK V F LKE +++ +
Sbjct: 66 AWDGINSKSFIQPEKYVVKFVPLSKLKESIDTYNKE 101
>gi|313203872|ref|YP_004042529.1| nlp/p60 protein [Paludibacter propionicigenes WB4]
gi|312443188|gb|ADQ79544.1| NLP/P60 protein [Paludibacter propionicigenes WB4]
Length = 258
Score = 37.1 bits (85), Expect = 0.95, Method: Composition-based stats.
Identities = 14/99 (14%), Positives = 31/99 (31%), Gaps = 10/99 (10%)
Query: 1 MIKSSL-----IGTIAKKNPK-LNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVR 54
M S L + I ++ + L + V + ++M + L +
Sbjct: 22 MT-SQLLFGECVEVIKTRDQQFLLRNLADNYVGWVDKKMIRILKKHEEQRLTELN-VHCV 79
Query: 55 KRAARLARAPLAQKVISVEEKMVPFFRAGKNLKERLNSP 93
+ + + + F+AG LK +N+
Sbjct: 80 CTPLIEGQNEETGEKLLLPGGSKLHFQAGTELK--VNNK 116
>gi|325281906|ref|YP_004254448.1| histone family protein DNA-binding protein [Odoribacter
splanchnicus DSM 20712]
gi|324313715|gb|ADY34268.1| histone family protein DNA-binding protein [Odoribacter
splanchnicus DSM 20712]
Length = 119
Score = 36.7 bits (84), Expect = 0.97, Method: Composition-based stats.
Identities = 21/88 (23%), Positives = 40/88 (45%), Gaps = 14/88 (15%)
Query: 4 SSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLARA 63
+ ++ I +K ++ DV+ +++ L E+ +AL NG V + GSF + +A
Sbjct: 16 AQIVKRI-EKRSTVSSADVKAVLDALQYEVIEALENGNTVRLGDIGSFHLTIKAE----- 69
Query: 64 PLAQKVISVEEKMVPFFRAGKNLKERLN 91
+VE K G L +++N
Sbjct: 70 ---GAATAVEAKAK-----GAKLIKQVN 89
>gi|329962082|ref|ZP_08300093.1| putative DNA-binding protein [Bacteroides fluxus YIT 12057]
gi|328530730|gb|EGF57588.1| putative DNA-binding protein [Bacteroides fluxus YIT 12057]
Length = 203
Score = 36.7 bits (84), Expect = 0.98, Method: Composition-based stats.
Identities = 18/82 (21%), Positives = 31/82 (37%), Gaps = 7/82 (8%)
Query: 12 KKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLARAPLAQKVIS 71
++ L DV +++ L + AL+ G RV + G G F+ P+ +
Sbjct: 43 QEYCSLTETDVLAVLDALSHFVGDALSEGRRVHLDGIGYFTPTL----TCTEPVTLETKR 98
Query: 72 VEEK---MVPFFRAGKNLKERL 90
K FR K L+ +
Sbjct: 99 KSTKVKLKSISFRPDKALRSEI 120
>gi|325919602|ref|ZP_08181614.1| putative DNA-binding protein [Xanthomonas gardneri ATCC 19865]
gi|325549938|gb|EGD20780.1| putative DNA-binding protein [Xanthomonas gardneri ATCC 19865]
Length = 127
Score = 36.7 bits (84), Expect = 1.00, Method: Composition-based stats.
Identities = 17/95 (17%), Positives = 32/95 (33%), Gaps = 9/95 (9%)
Query: 3 KSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRK-----RA 57
K+ L+ IA+ +L +DV ++ L +L+ G G + +
Sbjct: 32 KTGLVAHIAEST-QLAPKDVRAVLATLESVAHSSLSKKGAGSFTLPGMLKLTSVHVPAKP 90
Query: 58 ARLARAPLAQKVIS---VEEKMVPFFRAGKNLKER 89
R P ++ + R K LK+
Sbjct: 91 KRKGINPFTKEEQTFAAKPASFKVKARLLKKLKDA 125
>gi|332530366|ref|ZP_08406311.1| histone family protein DNA-binding protein [Hylemonella gracilis
ATCC 19624]
gi|332040177|gb|EGI76558.1| histone family protein DNA-binding protein [Hylemonella gracilis
ATCC 19624]
Length = 106
Score = 36.7 bits (84), Expect = 1.1, Method: Composition-based stats.
Identities = 17/96 (17%), Positives = 33/96 (34%), Gaps = 9/96 (9%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRA---- 57
K +L +A++ + + V+ ++ L M A+ G E G + +
Sbjct: 10 TKGALASHLAEQ-AGVEPKAVKAVLAALEATMLGAINKKGAGEFTLPGLLKIGVQKVPAK 68
Query: 58 -ARLARAPLAQKVIS---VEEKMVPFFRAGKNLKER 89
R P ++ + RA K LK+
Sbjct: 69 PKRKGINPFTKEEQVFAAKPATVRIKARALKKLKDA 104
>gi|260170959|ref|ZP_05757371.1| putative DNA-binding protein [Bacteroides sp. D2]
Length = 233
Score = 36.7 bits (84), Expect = 1.2, Method: Composition-based stats.
Identities = 26/87 (29%), Positives = 36/87 (41%), Gaps = 2/87 (2%)
Query: 4 SSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLARA 63
L+ I + L+ DV + L E+ Q L G +V I G G V R
Sbjct: 56 KKLVYRIHDRCS-LSPSDVTATLEELKYEVAQCLKEGKKVHIDGLGYLQVTLSCEEEIRD 114
Query: 64 PLAQKVISVEEKMVPFFRAGKNLKERL 90
P ++V V+ K F+A K LK L
Sbjct: 115 PKDKRVHKVKLK-AIKFKADKELKAEL 140
>gi|298375884|ref|ZP_06985840.1| DNA-binding protein [Bacteroides sp. 3_1_19]
gi|298266921|gb|EFI08578.1| DNA-binding protein [Bacteroides sp. 3_1_19]
Length = 253
Score = 36.3 bits (83), Expect = 1.3, Method: Composition-based stats.
Identities = 22/91 (24%), Positives = 37/91 (40%), Gaps = 11/91 (12%)
Query: 5 SLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLARAP 64
I AK + D++ I+ + + M L G VE+ G G+FSV +R
Sbjct: 80 EFINR-AKSRSSFSPADMKGILQLFQDMMVDFLMYGYNVELEGIGTFSV-SLKSRPVM-- 135
Query: 65 LAQKVISVEEK----MVPFFRAGKNLKERLN 91
+ + + FR+ K L++RL
Sbjct: 136 ---EKNEIRAESIHFKDVKFRSSKELRDRLK 163
>gi|167762549|ref|ZP_02434676.1| hypothetical protein BACSTE_00905 [Bacteroides stercoris ATCC
43183]
gi|167699655|gb|EDS16234.1| hypothetical protein BACSTE_00905 [Bacteroides stercoris ATCC
43183]
Length = 204
Score = 36.3 bits (83), Expect = 1.3, Method: Composition-based stats.
Identities = 21/92 (22%), Positives = 33/92 (35%), Gaps = 10/92 (10%)
Query: 3 KSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLAR 62
+ I + ++ +E + ++E+ LANG VE+ G F+ R A
Sbjct: 34 RKEFIDRVHL-FTGISRSVLEGAMAAFMDELRDCLANGWTVELGELGYFTPSLSCRRRAM 92
Query: 63 APLAQKVISVEEKMV----PFFRAGKNLKERL 90
+ V V FR GK E L
Sbjct: 93 -----EKDEVRAASVALRGLNFRLGKKFHEDL 119
>gi|270296533|ref|ZP_06202733.1| conserved hypothetical protein [Bacteroides sp. D20]
gi|317480255|ref|ZP_07939361.1| hypothetical protein HMPREF1007_02478 [Bacteroides sp. 4_1_36]
gi|270273937|gb|EFA19799.1| conserved hypothetical protein [Bacteroides sp. D20]
gi|316903576|gb|EFV25424.1| hypothetical protein HMPREF1007_02478 [Bacteroides sp. 4_1_36]
Length = 170
Score = 36.3 bits (83), Expect = 1.3, Method: Composition-based stats.
Identities = 24/95 (25%), Positives = 38/95 (40%), Gaps = 20/95 (21%)
Query: 7 IGTIAK---KNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKR------- 56
I +A KN + DV+ ++ L+EE+ LANG +V++ G+F + R
Sbjct: 37 IDVLAASIQKNCAMTKGDVKHVIEALVEEIQGNLANGDKVKLNQLGTFHMTFRCPGMEAS 96
Query: 57 AARLARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R K+ F K LK +N
Sbjct: 97 DKCTVRNI---------SKVNIRFIPDKELK-LVN 121
>gi|254485852|ref|ZP_05099057.1| DNA-binding protein HU, putative [Roseobacter sp. GAI101]
gi|214042721|gb|EEB83359.1| DNA-binding protein HU, putative [Roseobacter sp. GAI101]
Length = 101
Score = 36.3 bits (83), Expect = 1.3, Method: Composition-based stats.
Identities = 13/57 (22%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRA 57
M K LI + +++ + +D + +V +L + +ALA+ + + G F V
Sbjct: 13 MRKKELIDLVVERSS-IKKKDAKPVVEAMLAVLGEALADNRELNLLPMGKFKVVNEK 68
>gi|86153462|ref|ZP_01071666.1| DNA-binding protein HU 1 [Campylobacter jejuni subsp. jejuni
HB93-13]
gi|85843188|gb|EAQ60399.1| DNA-binding protein HU 1 [Campylobacter jejuni subsp. jejuni
HB93-13]
Length = 45
Score = 36.3 bits (83), Expect = 1.4, Method: Composition-based stats.
Identities = 18/36 (50%), Positives = 21/36 (58%)
Query: 55 KRAARLARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
+RAAR AR P K I V V F+ GKNLKE +
Sbjct: 1 ERAAREARVPSTGKTIKVPATRVAKFKVGKNLKEAV 36
>gi|115523980|ref|YP_780891.1| histone family protein DNA-binding protein [Rhodopseudomonas
palustris BisA53]
gi|115517927|gb|ABJ05911.1| histone family protein DNA-binding protein [Rhodopseudomonas
palustris BisA53]
Length = 98
Score = 36.3 bits (83), Expect = 1.4, Method: Composition-based stats.
Identities = 19/96 (19%), Positives = 35/96 (36%), Gaps = 7/96 (7%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRA--- 57
M K+ LI I++ + + DV+ ++ + + L G I GF SV +
Sbjct: 4 MSKAQLIDAISESSSV-SKSDVKAVIEHMATVGYKELNEVGEFVIPGFAKMSVVNKPATE 62
Query: 58 ARLARAPLAQKVIS---VEEKMVPFFRAGKNLKERL 90
AR P ++ + K K+ +
Sbjct: 63 ARSGINPFTKEPMEFAAKPASKTVKASPLKVAKDAV 98
>gi|13508268|ref|NP_110218.1| histone like protein [Mycoplasma pneumoniae M129]
gi|2496402|sp|P75249|Y529_MYCPN RecName: Full=Uncharacterized protein MG353 homolog
gi|1673985|gb|AAB95961.1| bacterial histone-like protein [Mycoplasma pneumoniae M129]
gi|301633234|gb|ADK86788.1| putative DNA-binding protein HU [Mycoplasma pneumoniae FH]
Length = 109
Score = 36.3 bits (83), Expect = 1.4, Method: Composition-based stats.
Identities = 13/83 (15%), Positives = 29/83 (34%), Gaps = 1/83 (1%)
Query: 7 IGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIR-GFGSFSVRKRAARLARAPL 65
I I + +++I L + L + + G + R AR+ +
Sbjct: 16 INKIIAVATGVKEAKIKEIFKYLNTLLLNELVSRSVCILPENLGKLRITIRNARIQKDMK 75
Query: 66 AQKVISVEEKMVPFFRAGKNLKE 88
++ + K + + K +KE
Sbjct: 76 TGEMKHIPPKPLVRYSPSKTIKE 98
>gi|330820882|ref|YP_004349744.1| DNA-binding protein BpH [Burkholderia gladioli BSR3]
gi|327372877|gb|AEA64232.1| DNA-binding protein BpH [Burkholderia gladioli BSR3]
Length = 147
Score = 36.3 bits (83), Expect = 1.5, Method: Composition-based stats.
Identities = 18/96 (18%), Positives = 36/96 (37%), Gaps = 9/96 (9%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKR----- 56
K+SL IA++ ++ + V+ ++ L + ++ G E G + +
Sbjct: 51 TKASLATHIAER-AEVELKTVKAVLATLENVILGSIHKKGAGEFTLPGLLKISAQAVAAK 109
Query: 57 AARLARAPLAQKVISVEEK---MVPFFRAGKNLKER 89
R + P + K + RA K LK+
Sbjct: 110 KKRFGKDPFTGEERWFPAKPASVRVKARALKKLKDA 145
>gi|327313337|ref|YP_004328774.1| putative DNA-binding protein [Prevotella denticola F0289]
gi|326944528|gb|AEA20413.1| putative DNA-binding protein [Prevotella denticola F0289]
Length = 202
Score = 36.3 bits (83), Expect = 1.5, Method: Composition-based stats.
Identities = 21/84 (25%), Positives = 34/84 (40%), Gaps = 2/84 (2%)
Query: 12 KKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLARAPLAQK-VI 70
+ + L + D+ V L +E+ L G V + G G FS+ + P + +
Sbjct: 40 EHSTSLTHADLLGAVRALNDEVAHQLMAGNAVHLPGLGYFSLA-VKGDIYEDPRSHHYRL 98
Query: 71 SVEEKMVPFFRAGKNLKERLNSPD 94
E FR +KERL S +
Sbjct: 99 HNPEVRTVKFRPDAEMKERLRSTE 122
>gi|262383760|ref|ZP_06076896.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
gi|301311932|ref|ZP_07217854.1| putative DNA-binding protein [Bacteroides sp. 20_3]
gi|262294658|gb|EEY82590.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
gi|300830034|gb|EFK60682.1| putative DNA-binding protein [Bacteroides sp. 20_3]
Length = 211
Score = 36.3 bits (83), Expect = 1.6, Method: Composition-based stats.
Identities = 22/91 (24%), Positives = 37/91 (40%), Gaps = 11/91 (12%)
Query: 5 SLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLARAP 64
I AK + D++ I+ + + M L G VE+ G G+FSV +R
Sbjct: 38 EFISR-AKSRSSFSPADMKGILQLFQDMMVDFLMFGYNVELEGIGTFSV-SLKSRPVM-- 93
Query: 65 LAQKVISVEEK----MVPFFRAGKNLKERLN 91
+ + + FR+ K L++RL
Sbjct: 94 ---EKNEIRAESIHFKDVKFRSSKELRDRLK 121
>gi|257468467|ref|ZP_05632561.1| hypothetical protein FulcA4_03939 [Fusobacterium ulcerans ATCC
49185]
Length = 45
Score = 36.3 bits (83), Expect = 1.6, Method: Composition-based stats.
Identities = 10/45 (22%), Positives = 25/45 (55%)
Query: 43 VEIRGFGSFSVRKRAARLARAPLAQKVISVEEKMVPFFRAGKNLK 87
++ G+F + + R+ P+ ++++++ K + FRA K +K
Sbjct: 1 MKFPKIGTFEILSKQPRVISNPVTRELMTIYPKKIIKFRASKKIK 45
>gi|329955615|ref|ZP_08296523.1| putative DNA-binding protein [Bacteroides clarus YIT 12056]
gi|328526018|gb|EGF53042.1| putative DNA-binding protein [Bacteroides clarus YIT 12056]
Length = 204
Score = 36.3 bits (83), Expect = 1.6, Method: Composition-based stats.
Identities = 23/97 (23%), Positives = 34/97 (35%), Gaps = 10/97 (10%)
Query: 3 KSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLAR 62
K I + ++ +E + ++E+ LANG VE+ G F+ R A
Sbjct: 34 KKEFIDRVHL-FTGISRSVLEGTMAAFMDELRDCLANGWTVELGELGYFTPSLSCQRRAM 92
Query: 63 APLAQKVISVEEKMV----PFFRAGKNLKERLNSPDS 95
+ V V FR GK E L S
Sbjct: 93 -----EKDKVRAASVALRGLNFRLGKRFYEELGSKMK 124
>gi|160888495|ref|ZP_02069498.1| hypothetical protein BACUNI_00912 [Bacteroides uniformis ATCC 8492]
gi|156862172|gb|EDO55603.1| hypothetical protein BACUNI_00912 [Bacteroides uniformis ATCC 8492]
Length = 207
Score = 36.3 bits (83), Expect = 1.6, Method: Composition-based stats.
Identities = 21/95 (22%), Positives = 36/95 (37%), Gaps = 8/95 (8%)
Query: 5 SLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLARAP 64
L I +++ L DV +++ L M + LA G +V + G G F + P
Sbjct: 37 ELRRRIQERSS-LTETDVSAVLDALSHVMGEDLAEGRQVHLDGIGYFYPVL----TSTEP 91
Query: 65 LAQKVISVEEK---MVPFFRAGKNLKERLNSPDST 96
+ K FRA + LK + + +
Sbjct: 92 VTAATKRKTTKIKLKGIKFRADQVLKNEIGAIKAK 126
>gi|308270543|emb|CBX27155.1| hypothetical protein N47_A11840 [uncultured Desulfobacterium sp.]
Length = 54
Score = 36.3 bits (83), Expect = 1.6, Method: Composition-based stats.
Identities = 13/50 (26%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSF 51
K++++ I + + + +IV+ +E + +L +G V I GFG F
Sbjct: 4 TKANIVENIQSEL-EFSKNKSLQIVDAFIETIRGSLESGDDVLISGFGKF 52
>gi|166711255|ref|ZP_02242462.1| Bacterial DNA-binding protein [Xanthomonas oryzae pv. oryzicola
BLS256]
Length = 141
Score = 35.9 bits (82), Expect = 1.7, Method: Composition-based stats.
Identities = 17/95 (17%), Positives = 31/95 (32%), Gaps = 9/95 (9%)
Query: 3 KSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRK-----RA 57
K+ L+ IA+ +L +DV ++ L +L+ G G + +
Sbjct: 46 KTGLVAHIAEST-QLAPKDVRAVLASLEATAHASLSKKGVGTFTIPGMLKLTTVHVPAKP 104
Query: 58 ARLARAPLAQKVIS---VEEKMVPFFRAGKNLKER 89
R P ++ R K LK+
Sbjct: 105 KRKGINPFTKEEQIFAAKPATSKIKSRMMKRLKDA 139
>gi|150008887|ref|YP_001303630.1| hypothetical protein BDI_2282 [Parabacteroides distasonis ATCC
8503]
gi|149937311|gb|ABR44008.1| conserved hypothetical protein [Parabacteroides distasonis ATCC
8503]
Length = 211
Score = 35.9 bits (82), Expect = 1.7, Method: Composition-based stats.
Identities = 23/91 (25%), Positives = 37/91 (40%), Gaps = 11/91 (12%)
Query: 5 SLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLARAP 64
I AK + D++ I+ + + M L G VE+ G G+FSV +R
Sbjct: 38 EFINR-AKSRSSFSPADMKGILQLFQDMMVDFLMFGYNVELEGIGTFSV-SLKSRPVM-- 93
Query: 65 LAQKVISVEEK----MVPFFRAGKNLKERLN 91
+ V + FR+ K L++RL
Sbjct: 94 ---EKNEVRAESIHFKDVKFRSSKELRDRLK 121
>gi|238024276|ref|YP_002908508.1| DNA-binding protein BpH [Burkholderia glumae BGR1]
gi|237878941|gb|ACR31273.1| DNA-binding protein BpH [Burkholderia glumae BGR1]
Length = 147
Score = 35.9 bits (82), Expect = 1.8, Method: Composition-based stats.
Identities = 18/96 (18%), Positives = 36/96 (37%), Gaps = 9/96 (9%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKR----- 56
K+SL IA++ ++ + V+ ++ L + ++ G E G + +
Sbjct: 51 TKASLATHIAER-AEVELKTVKAVLATLENVILGSIHKKGAGEFTLPGLLKISAQAVAAK 109
Query: 57 AARLARAPLAQKVISVEEK---MVPFFRAGKNLKER 89
R + P + K + RA K LK+
Sbjct: 110 KKRFGKDPFTGEERWFPAKPASVRVKARALKKLKDA 145
>gi|161521145|ref|YP_001584572.1| histone family protein DNA-binding protein [Burkholderia
multivorans ATCC 17616]
gi|189352677|ref|YP_001948304.1| histone-like DNA-binding protein [Burkholderia multivorans ATCC
17616]
gi|221212497|ref|ZP_03585474.1| histone H1 homolog BpH2 [Burkholderia multivorans CGD1]
gi|160345195|gb|ABX18280.1| histone family protein DNA-binding protein [Burkholderia
multivorans ATCC 17616]
gi|189336699|dbj|BAG45768.1| histone-like DNA-binding protein [Burkholderia multivorans ATCC
17616]
gi|221167596|gb|EEE00066.1| histone H1 homolog BpH2 [Burkholderia multivorans CGD1]
Length = 147
Score = 35.9 bits (82), Expect = 1.8, Method: Composition-based stats.
Identities = 18/96 (18%), Positives = 35/96 (36%), Gaps = 9/96 (9%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKR----- 56
K+SL IA++ + + V+ ++ L + ++ G E G + +
Sbjct: 51 TKASLAAHIAERAA-VEVKAVKAVLAALENVVLGSIHKKGAGEFTLPGLLKITAQAVPAK 109
Query: 57 AARLARAPLAQKVISVEEK---MVPFFRAGKNLKER 89
R + P + K + RA K LK+
Sbjct: 110 KKRFGKDPFTGEERWFPAKPATVRVKARALKKLKDA 145
>gi|224026653|ref|ZP_03645019.1| hypothetical protein BACCOPRO_03410 [Bacteroides coprophilus DSM
18228]
gi|224019889|gb|EEF77887.1| hypothetical protein BACCOPRO_03410 [Bacteroides coprophilus DSM
18228]
Length = 44
Score = 35.9 bits (82), Expect = 1.8, Method: Composition-based stats.
Identities = 9/43 (20%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRV 43
M K+ ++ IAK+ + V +V ++ + ++ G V
Sbjct: 1 MTKAEIVDRIAKQT-GIEKNTVTAVVEAFMKSVKDSMIVGEEV 42
>gi|118580695|ref|YP_901945.1| integration host factor subunit alpha [Pelobacter propionicus DSM
2379]
gi|118503405|gb|ABK99887.1| integration host factor, alpha subunit [Pelobacter propionicus
DSM 2379]
Length = 57
Score = 35.9 bits (82), Expect = 1.9, Method: Composition-based stats.
Identities = 8/44 (18%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEI 45
K+ ++ I +K +D ++ + + M L G +++I
Sbjct: 8 TKADIVERIYEKT-GFAKKDCADLLETVFDIMKATLEAGEKLKI 50
>gi|313897652|ref|ZP_07831194.1| hypothetical protein HMPREF9406_0693 [Clostridium sp. HGF2]
gi|312957604|gb|EFR39230.1| hypothetical protein HMPREF9406_0693 [Clostridium sp. HGF2]
Length = 193
Score = 35.9 bits (82), Expect = 1.9, Method: Composition-based stats.
Identities = 9/40 (22%), Positives = 18/40 (45%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANG 40
M K I + K+ +L + E ++N E + + +G
Sbjct: 1 MNKQEFISLLEKRLFQLPQVEKEHLLNYYNETIEDRMEDG 40
>gi|157093125|gb|ABV22217.1| major basic nuclear protein [Karlodinium micrum]
Length = 110
Score = 35.9 bits (82), Expect = 1.9, Method: Composition-based stats.
Identities = 19/94 (20%), Positives = 37/94 (39%), Gaps = 5/94 (5%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M K +L +A ++ L + +++N +++ T+ + G I G R + A
Sbjct: 18 MSKGALAKALADEH-GLKQKACSEVLNSIVDIATKEVKKNGIFTIHGVCRIKTRTKPATK 76
Query: 61 A--RAPLAQKVIS--VEEKMVPFFRAGKNLKERL 90
A R ++V K V LK ++
Sbjct: 77 AGVRNIFGKEVKVAAKPAKTVVKAYPAAALKSQI 110
>gi|298385143|ref|ZP_06994702.1| DNA-binding protein [Bacteroides sp. 1_1_14]
gi|298262287|gb|EFI05152.1| DNA-binding protein [Bacteroides sp. 1_1_14]
Length = 161
Score = 35.9 bits (82), Expect = 2.0, Method: Composition-based stats.
Identities = 22/91 (24%), Positives = 41/91 (45%), Gaps = 5/91 (5%)
Query: 7 IGTIAKK---NPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLARA 63
I +A++ + +N+ DV ++ L EM + G V + GSF V R+ +
Sbjct: 36 IDEMAERIQRSSTVNWADVVCVLRALQTEMIDSFKKGEIVRLGNIGSFYVTLRSNGVLVQ 95
Query: 64 PLAQKVISVEEKMVPFFRAGKNLKERLNSPD 94
++ + + FR GK +K+ L + D
Sbjct: 96 KDVKEGLIKGAR--VRFRPGKEIKDALKTLD 124
>gi|84622954|ref|YP_450326.1| histone-like protein [Xanthomonas oryzae pv. oryzae MAFF 311018]
gi|122879099|ref|YP_200053.6| histone-like protein [Xanthomonas oryzae pv. oryzae KACC10331]
gi|188577987|ref|YP_001914916.1| bacterial DNA-binding protein [Xanthomonas oryzae pv. oryzae
PXO99A]
gi|84366894|dbj|BAE68052.1| histone-like protein [Xanthomonas oryzae pv. oryzae MAFF 311018]
gi|188522439|gb|ACD60384.1| bacterial DNA-binding protein [Xanthomonas oryzae pv. oryzae
PXO99A]
Length = 141
Score = 35.9 bits (82), Expect = 2.0, Method: Composition-based stats.
Identities = 17/95 (17%), Positives = 31/95 (32%), Gaps = 9/95 (9%)
Query: 3 KSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRK-----RA 57
K+ L+ IA+ +L +DV ++ L +L+ G G + +
Sbjct: 46 KTGLVAHIAEST-QLAPKDVRAVLASLEATAHASLSKKGVGTFTIPGMLKLTTVHVPAKP 104
Query: 58 ARLARAPLAQKVIS---VEEKMVPFFRAGKNLKER 89
R P ++ R K LK+
Sbjct: 105 KRKGINPFTKEEQIFAAKPATSKIKSRMMKRLKDA 139
>gi|255014715|ref|ZP_05286841.1| hypothetical protein B2_12469 [Bacteroides sp. 2_1_7]
Length = 253
Score = 35.9 bits (82), Expect = 2.0, Method: Composition-based stats.
Identities = 22/91 (24%), Positives = 37/91 (40%), Gaps = 11/91 (12%)
Query: 5 SLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLARAP 64
I AK + D++ I+ + + M L G VE+ G G+FSV +R
Sbjct: 80 EFINR-AKSRSSFSPADMKGILQLFQDMMVDFLMFGYNVELEGIGTFSV-SLKSRPVM-- 135
Query: 65 LAQKVISVEEK----MVPFFRAGKNLKERLN 91
+ + + FR+ K L++RL
Sbjct: 136 ---EKNEIRAESIHFKDVKFRSSKELRDRLK 163
>gi|302419121|ref|XP_003007391.1| conserved hypothetical protein [Verticillium albo-atrum VaMs.102]
gi|261353042|gb|EEY15470.1| conserved hypothetical protein [Verticillium albo-atrum VaMs.102]
Length = 1145
Score = 35.9 bits (82), Expect = 2.1, Method: Composition-based stats.
Identities = 16/94 (17%), Positives = 35/94 (37%), Gaps = 9/94 (9%)
Query: 7 IGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGR-VEIRGFGSFSVRKRAARLARAPL 65
I I + +L+ + E+ + E+ A G I + + + R P+
Sbjct: 18 IPNIQEFVAQLDKEKAER-DAAIDAELKNNKAKGETLDHIPEKKHRLHKNKKTKTVRDPV 76
Query: 66 AQKVISVEEKMVPFFRAGKNLKERLNSPDSTLSN 99
K + +E+ + KE + +P ++ N
Sbjct: 77 TGKDVEIEDAKT-------DFKEAVENPKISIPN 103
>gi|83717539|ref|YP_438900.1| DNA-binding protein BpH2 [Burkholderia thailandensis E264]
gi|83651364|gb|ABC35428.1| DNA-binding protein BpH2 [Burkholderia thailandensis E264]
Length = 147
Score = 35.9 bits (82), Expect = 2.1, Method: Composition-based stats.
Identities = 18/96 (18%), Positives = 35/96 (36%), Gaps = 9/96 (9%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKR----- 56
K+SL IA++ + + V+ ++ L + ++ G E G + +
Sbjct: 51 TKASLATHIAERAA-IEVKAVKAVLAALENVVLGSIHKKGAGEFTLPGLLKITAQAVPAK 109
Query: 57 AARLARAPLAQKVISVEEK---MVPFFRAGKNLKER 89
R + P + K + RA K LK+
Sbjct: 110 KKRFGKDPFTGEERWFPAKPASVRVKARALKKLKDA 145
>gi|21232189|ref|NP_638106.1| histone-like protein [Xanthomonas campestris pv. campestris str.
ATCC 33913]
gi|66767682|ref|YP_242444.1| histone-like protein [Xanthomonas campestris pv. campestris str.
8004]
gi|188990799|ref|YP_001902809.1| Bacterial DNA-binding protein [Xanthomonas campestris pv.
campestris str. B100]
gi|21113945|gb|AAM42030.1| histone-like protein [Xanthomonas campestris pv. campestris str.
ATCC 33913]
gi|66573014|gb|AAY48424.1| histone-like protein [Xanthomonas campestris pv. campestris str.
8004]
gi|167732559|emb|CAP50753.1| Bacterial DNA-binding protein [Xanthomonas campestris pv.
campestris]
Length = 140
Score = 35.9 bits (82), Expect = 2.1, Method: Composition-based stats.
Identities = 18/95 (18%), Positives = 32/95 (33%), Gaps = 9/95 (9%)
Query: 3 KSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRK-----RA 57
K+ L+ IA+ +L +DV ++ L +L+ G G + +
Sbjct: 45 KTGLVAHIAE-TTQLAPKDVRAVLASLEATAHASLSKKGVGSFVLPGMLKITSVNVPAKP 103
Query: 58 ARLARAPLAQKVISV---EEKMVPFFRAGKNLKER 89
R P ++ RA K LK+
Sbjct: 104 KRKGINPFTKEEQVFAARPATCKLKVRAMKRLKDA 138
>gi|21243654|ref|NP_643236.1| histone-like protein [Xanthomonas axonopodis pv. citri str. 306]
gi|21109232|gb|AAM37772.1| histone-like protein [Xanthomonas axonopodis pv. citri str. 306]
Length = 141
Score = 35.5 bits (81), Expect = 2.2, Method: Composition-based stats.
Identities = 17/95 (17%), Positives = 31/95 (32%), Gaps = 9/95 (9%)
Query: 3 KSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRK-----RA 57
K+ L+ IA+ +L +DV ++ L +L+ G G + +
Sbjct: 46 KTGLVAHIAEST-QLAPKDVRAVLASLEATAHASLSKKGVGTFTIPGMLKLTTVHVPAKP 104
Query: 58 ARLARAPLAQKVIS---VEEKMVPFFRAGKNLKER 89
R P ++ R K LK+
Sbjct: 105 KRKGINPFTKEEQIFAAKPATTKLKSRMMKRLKDA 139
>gi|114762939|ref|ZP_01442371.1| hypothetical protein 1100011001359_R2601_26496 [Pelagibaca
bermudensis HTCC2601]
gi|114544549|gb|EAU47556.1| hypothetical protein R2601_26496 [Roseovarius sp. HTCC2601]
Length = 141
Score = 35.5 bits (81), Expect = 2.3, Method: Composition-based stats.
Identities = 12/73 (16%), Positives = 26/73 (35%), Gaps = 8/73 (10%)
Query: 3 KSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLAR 62
K L+ + + + ++ + V L + +ALA G + + FG V R
Sbjct: 56 KKELVDRVVAR-CGVKKREAKPSVEAALAILGEALAEGRELRLEPFGKLKVSNIKTR--- 111
Query: 63 APLAQKVISVEEK 75
+ + +
Sbjct: 112 ----GEKRVINAR 120
>gi|29347400|ref|NP_810903.1| hypothetical protein BT_1990 [Bacteroides thetaiotaomicron
VPI-5482]
gi|253570563|ref|ZP_04847971.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
gi|29339300|gb|AAO77097.1| Histone-like bacterial DNA-binding protein [Bacteroides
thetaiotaomicron VPI-5482]
gi|251839512|gb|EES67595.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
Length = 161
Score = 35.5 bits (81), Expect = 2.3, Method: Composition-based stats.
Identities = 22/91 (24%), Positives = 41/91 (45%), Gaps = 5/91 (5%)
Query: 7 IGTIAKK---NPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLARA 63
I +A++ + +N+ DV ++ L EM + G V + GSF V R+ +
Sbjct: 36 IDEMAERIQRSSTVNWADVVCVLRALQTEMIDSFKKGEIVRLGNIGSFYVTLRSNGVLVQ 95
Query: 64 PLAQKVISVEEKMVPFFRAGKNLKERLNSPD 94
++ + + FR GK +K+ L + D
Sbjct: 96 KDVKEGLIKGAR--VRFRPGKEIKDALKTLD 124
>gi|255652549|ref|ZP_05399451.1| hypothetical protein CdifQCD_20371 [Clostridium difficile
QCD-37x79]
Length = 101
Score = 35.5 bits (81), Expect = 2.4, Method: Composition-based stats.
Identities = 12/88 (13%), Positives = 31/88 (35%), Gaps = 7/88 (7%)
Query: 1 MIKSSLIG----TIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKR 56
M K+ + + ++ +L ++V+ +++ E + +G I GF ++
Sbjct: 1 MRKNEYVKLFQEKLKEEGLELKQKEVDVVLDAFKELVVDIFKSGEDATIGGFLKIGRKEI 60
Query: 57 AARLARA--P-LAQKVISVEEKMVPFFR 81
A P + + P +
Sbjct: 61 EACEKTHTLPGKEGEKYIIPASTKPTVK 88
>gi|34540166|ref|NP_904645.1| histone-like family DNA-binding protein [Porphyromonas gingivalis
W83]
gi|34396478|gb|AAQ65544.1| DNA-binding protein, histone-like family [Porphyromonas gingivalis
W83]
Length = 171
Score = 35.5 bits (81), Expect = 2.4, Method: Composition-based stats.
Identities = 21/82 (25%), Positives = 38/82 (46%), Gaps = 3/82 (3%)
Query: 6 LIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLARAPL 65
L IA+++ L DV+ I++ L+ +++ L NG V I GSF + ++ P
Sbjct: 38 LCKRIAEESA-LTSADVKGILDRLVNILSEELPNGKTVRIGELGSFRL-SFGSKQLDDPK 95
Query: 66 AQKVISVEEKMVPFFRAGKNLK 87
V +++ + F LK
Sbjct: 96 NFSVDQIQKHRLV-FIPSAELK 116
>gi|167590247|ref|ZP_02382635.1| histone family protein DNA-binding protein [Burkholderia ubonensis
Bu]
Length = 117
Score = 35.5 bits (81), Expect = 2.5, Method: Composition-based stats.
Identities = 18/96 (18%), Positives = 35/96 (36%), Gaps = 9/96 (9%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKR----- 56
K+SL IA++ + + V+ ++ L + ++ G E G + +
Sbjct: 21 TKASLAAHIAERAA-VEVKAVKAVLAALENVVLGSVHKKGAGEFTLPGLLKITAQAVPAK 79
Query: 57 AARLARAPLAQKVISVEEK---MVPFFRAGKNLKER 89
R + P + K + RA K LK+
Sbjct: 80 KKRFGKDPFTGEERWFPAKPASVRVKARALKKLKDA 115
>gi|257468208|ref|ZP_05632304.1| hypothetical protein FulcA4_02652 [Fusobacterium ulcerans ATCC
49185]
gi|317062493|ref|ZP_07926978.1| predicted protein [Fusobacterium ulcerans ATCC 49185]
gi|313688169|gb|EFS25004.1| predicted protein [Fusobacterium ulcerans ATCC 49185]
Length = 65
Score = 35.5 bits (81), Expect = 2.6, Method: Composition-based stats.
Identities = 15/64 (23%), Positives = 31/64 (48%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M + I K+N ++++V + +++ + +AL +V + +G F R+R AR
Sbjct: 1 MTEEEFIRFYKKRNNSKSHKEVREKIDLFWNVLLKALDEDKKVIFKNWGVFEKRERKARK 60
Query: 61 ARAP 64
P
Sbjct: 61 VLVP 64
>gi|226943961|ref|YP_002799034.1| histone-like protein [Azotobacter vinelandii DJ]
gi|226718888|gb|ACO78059.1| histone-like protein [Azotobacter vinelandii DJ]
Length = 40
Score = 35.5 bits (81), Expect = 2.7, Method: Composition-based stats.
Identities = 12/33 (36%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEM 33
M KS LI ++A + L+ K++N LLE +
Sbjct: 1 MNKSELIASVAN-HGDLDKATATKVINALLETI 32
>gi|329955710|ref|ZP_08296618.1| putative DNA-binding protein [Bacteroides clarus YIT 12056]
gi|328526113|gb|EGF53137.1| putative DNA-binding protein [Bacteroides clarus YIT 12056]
Length = 162
Score = 35.5 bits (81), Expect = 2.8, Method: Composition-based stats.
Identities = 23/95 (24%), Positives = 37/95 (38%), Gaps = 20/95 (21%)
Query: 7 IGTIAK---KNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVR-------KR 56
I +A KN + DV+ ++ L+EE+ LANG +V++ G+ + K
Sbjct: 37 IDVLAASIQKNCAMTKGDVKHVIEALVEEIQTNLANGDKVKLNQLGTLHMTFRCPGVEKS 96
Query: 57 AARLARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R K+ F K LK +N
Sbjct: 97 EDCTVRNI---------SKVNIRFVPDKGLK-LVN 121
>gi|167840351|ref|ZP_02467035.1| DNA-binding protein BpH2 [Burkholderia thailandensis MSMB43]
Length = 117
Score = 35.5 bits (81), Expect = 2.8, Method: Composition-based stats.
Identities = 18/96 (18%), Positives = 35/96 (36%), Gaps = 9/96 (9%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKR----- 56
K+SL IA++ + + V+ ++ L + ++ G E G + +
Sbjct: 21 TKASLATHIAERAA-IEVKAVKAVLAALENVVLGSVHKKGAGEFTLPGLLKITAQAVPAK 79
Query: 57 AARLARAPLAQKVISVEEK---MVPFFRAGKNLKER 89
R + P + K + RA K LK+
Sbjct: 80 KKRFGKDPFTGEERWFPAKPASVRVKARALKKLKDA 115
>gi|319760136|ref|YP_004124075.1| histone family protein DNA-binding protein [Alicycliphilus
denitrificans BC]
gi|317119742|gb|ADV02230.1| histone family protein DNA-binding protein [Alicycliphilus
denitrificans BC]
Length = 123
Score = 35.1 bits (80), Expect = 2.8, Method: Composition-based stats.
Identities = 19/96 (19%), Positives = 37/96 (38%), Gaps = 9/96 (9%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGR--VEIRGFGSFSVRKRAA- 58
K+SL +A++ ++ + V+ ++ L M ++ G + G V+K A
Sbjct: 27 TKTSLTALLAERT-GVDAKSVKAVLAALEGAMLGSVNKKGAQAFTLPGLLKIEVQKIPAK 85
Query: 59 --RLARAPLAQKVIS---VEEKMVPFFRAGKNLKER 89
R P ++ + RA K LK+
Sbjct: 86 PKRKGINPFTKEEQVFAAKPASVRIKARALKKLKDA 121
>gi|241762983|ref|ZP_04761045.1| histone family protein DNA-binding protein [Acidovorax delafieldii
2AN]
gi|241367935|gb|EER62154.1| histone family protein DNA-binding protein [Acidovorax delafieldii
2AN]
Length = 131
Score = 35.1 bits (80), Expect = 2.8, Method: Composition-based stats.
Identities = 16/96 (16%), Positives = 32/96 (33%), Gaps = 9/96 (9%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRA---- 57
K +L +A+ + + V+ ++ L + A+ G E G + +
Sbjct: 35 TKGALTNHLAE-LAGVEPKAVKAVLAALETTVLGAVNKKGAGEFTLPGLLKIGVQKVPAK 93
Query: 58 -ARLARAPLAQKVIS---VEEKMVPFFRAGKNLKER 89
R P ++ + RA K LK+
Sbjct: 94 PKRKGINPFTKEEQVFAAKPATVRIKARALKKLKDA 129
>gi|260592134|ref|ZP_05857592.1| putative non-specific DNA binding protein [Prevotella veroralis
F0319]
gi|260535915|gb|EEX18532.1| putative non-specific DNA binding protein [Prevotella veroralis
F0319]
Length = 148
Score = 35.1 bits (80), Expect = 2.9, Method: Composition-based stats.
Identities = 20/92 (21%), Positives = 40/92 (43%), Gaps = 6/92 (6%)
Query: 5 SLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLARAP 64
+ IA ++ L D+E ++ +E + L +G V++ FG+ + + A
Sbjct: 34 DIAKDIAGRSS-LTRGDIENVLTNFMECLPSYLRDGFSVQLGEFGTMRLTLSSTGAA-NE 91
Query: 65 LAQKVISVEEKMVPFFRAGKNLKERL--NSPD 94
+ K +++ + F G LK L NS +
Sbjct: 92 KSFKTETIKPR--VTFTPGVELKAALRDNSYE 121
>gi|189465367|ref|ZP_03014152.1| hypothetical protein BACINT_01716 [Bacteroides intestinalis DSM
17393]
gi|189437641|gb|EDV06626.1| hypothetical protein BACINT_01716 [Bacteroides intestinalis DSM
17393]
Length = 207
Score = 35.1 bits (80), Expect = 2.9, Method: Composition-based stats.
Identities = 17/95 (17%), Positives = 32/95 (33%), Gaps = 10/95 (10%)
Query: 3 KSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLAR 62
+ + + ++ +E + ++E+ LA+G VE G F+ R
Sbjct: 34 RKEFLNRVHL-FTGISRSLLEGAMASFMDELRDCLADGWTVEFGELGYFTPSLNCRREVM 92
Query: 63 APLAQKVISVEEKMV----PFFRAGKNLKERLNSP 93
+ + V FR GK + LN
Sbjct: 93 -----EKKELRAASVTLRGLNFRLGKEFYKELNKK 122
>gi|167577274|ref|ZP_02370148.1| DNA-binding protein BpH2 [Burkholderia thailandensis TXDOH]
gi|167615413|ref|ZP_02384048.1| DNA-binding protein BpH2 [Burkholderia thailandensis Bt4]
gi|257141985|ref|ZP_05590247.1| DNA-binding protein BpH2 [Burkholderia thailandensis E264]
Length = 117
Score = 35.1 bits (80), Expect = 2.9, Method: Composition-based stats.
Identities = 18/96 (18%), Positives = 35/96 (36%), Gaps = 9/96 (9%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKR----- 56
K+SL IA++ + + V+ ++ L + ++ G E G + +
Sbjct: 21 TKASLATHIAERAA-IEVKAVKAVLAALENVVLGSIHKKGAGEFTLPGLLKITAQAVPAK 79
Query: 57 AARLARAPLAQKVISVEEK---MVPFFRAGKNLKER 89
R + P + K + RA K LK+
Sbjct: 80 KKRFGKDPFTGEERWFPAKPASVRVKARALKKLKDA 115
>gi|170702375|ref|ZP_02893266.1| histone family protein DNA-binding protein [Burkholderia ambifaria
IOP40-10]
gi|172062904|ref|YP_001810555.1| histone family protein DNA-binding protein [Burkholderia ambifaria
MC40-6]
gi|170132710|gb|EDT01147.1| histone family protein DNA-binding protein [Burkholderia ambifaria
IOP40-10]
gi|171995421|gb|ACB66339.1| histone family protein DNA-binding protein [Burkholderia ambifaria
MC40-6]
Length = 149
Score = 35.1 bits (80), Expect = 3.1, Method: Composition-based stats.
Identities = 18/96 (18%), Positives = 35/96 (36%), Gaps = 9/96 (9%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKR----- 56
K+SL IA++ + + V+ ++ L + ++ G E G + +
Sbjct: 53 TKASLATHIAERAA-VEVKAVKAVLTALENVVLGSVHKKGAGEFTLPGLLKITAQVVPAK 111
Query: 57 AARLARAPLAQKVISVEEK---MVPFFRAGKNLKER 89
R + P + K + RA K LK+
Sbjct: 112 KKRFGKDPFTGEERWFPAKPASVRVKARALKKLKDA 147
>gi|260893224|ref|YP_003239321.1| hypothetical protein Adeg_1369 [Ammonifex degensii KC4]
gi|260865365|gb|ACX52471.1| hypothetical protein Adeg_1369 [Ammonifex degensii KC4]
Length = 89
Score = 35.1 bits (80), Expect = 3.2, Method: Composition-based stats.
Identities = 20/100 (20%), Positives = 37/100 (37%), Gaps = 14/100 (14%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDV-EKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAAR 59
M + L A+K +DV E ++ + + L G+V+++G G F + K +
Sbjct: 1 MKTAELCRLAAEK-GGFWKKDVREFLLQHFPAALAEGLVRDGKVKLKGVGVFYLAKPPGK 59
Query: 60 LARAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDSTLSN 99
+K + FR L +LN +
Sbjct: 60 K------RKGVY------VRFRPSSLLLRKLNGEGKRDES 87
>gi|281420313|ref|ZP_06251312.1| putative DNA-binding protein [Prevotella copri DSM 18205]
gi|281405615|gb|EFB36295.1| putative DNA-binding protein [Prevotella copri DSM 18205]
Length = 212
Score = 35.1 bits (80), Expect = 3.2, Method: Composition-based stats.
Identities = 14/97 (14%), Positives = 33/97 (34%), Gaps = 4/97 (4%)
Query: 3 KSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFS----VRKRAA 58
+ + + + ++ E ++ +++ +T L+ G V + GFG+FS
Sbjct: 32 RKEFVKMMQNYHRGISESTTEAVLTDVVDMLTDMLSMGYNVNLEGFGTFSLSLAFEDEKP 91
Query: 59 RLARAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDS 95
R P + F+A + +
Sbjct: 92 REILNPDDKMTYRKVGVKDINFKASPEFIKEVKRETD 128
>gi|188995495|ref|YP_001929747.1| piutative DNA-binding protein histone-like family [Porphyromonas
gingivalis ATCC 33277]
gi|188595175|dbj|BAG34150.1| piutative DNA-binding protein histone-like family [Porphyromonas
gingivalis ATCC 33277]
Length = 172
Score = 35.1 bits (80), Expect = 3.3, Method: Composition-based stats.
Identities = 21/82 (25%), Positives = 38/82 (46%), Gaps = 3/82 (3%)
Query: 6 LIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLARAPL 65
L IA+++ L DV+ I++ L+ +++ L NG V I GSF + ++ P
Sbjct: 38 LCKRIAEESA-LTSADVKGILDRLVNILSEELPNGKTVRIGELGSFRL-SFGSKQLDDPK 95
Query: 66 AQKVISVEEKMVPFFRAGKNLK 87
V +++ + F LK
Sbjct: 96 NFSVDQIQKHRLV-FIPSAELK 116
>gi|171318607|ref|ZP_02907755.1| histone family protein DNA-binding protein [Burkholderia ambifaria
MEX-5]
gi|171096205|gb|EDT41124.1| histone family protein DNA-binding protein [Burkholderia ambifaria
MEX-5]
Length = 118
Score = 35.1 bits (80), Expect = 3.4, Method: Composition-based stats.
Identities = 18/96 (18%), Positives = 35/96 (36%), Gaps = 9/96 (9%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKR----- 56
K+SL IA++ + + V+ ++ L + ++ G E G + +
Sbjct: 22 TKASLATHIAERAA-VEVKAVKAVLTALENVVLGSVHKKGAGEFTLPGLLKITAQVVPAK 80
Query: 57 AARLARAPLAQKVISVEEK---MVPFFRAGKNLKER 89
R + P + K + RA K LK+
Sbjct: 81 KKRFGKDPFTGEERWFPAKPASVRVKARALKKLKDA 116
>gi|88597555|ref|ZP_01100789.1| DNA-binding protein HU [Campylobacter jejuni subsp. jejuni 84-25]
gi|88190147|gb|EAQ94122.1| DNA-binding protein HU [Campylobacter jejuni subsp. jejuni 84-25]
Length = 42
Score = 35.1 bits (80), Expect = 3.4, Method: Composition-based stats.
Identities = 16/33 (48%), Positives = 18/33 (54%)
Query: 58 ARLARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
AR AR P K I V V F+ GKNLKE +
Sbjct: 1 AREARVPSTGKTIKVPATRVAKFKVGKNLKEAV 33
>gi|206562867|ref|YP_002233630.1| putative histone-like protein [Burkholderia cenocepacia J2315]
gi|198038907|emb|CAR54869.1| putative histone-like protein [Burkholderia cenocepacia J2315]
Length = 149
Score = 35.1 bits (80), Expect = 3.4, Method: Composition-based stats.
Identities = 18/96 (18%), Positives = 35/96 (36%), Gaps = 9/96 (9%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKR----- 56
K+SL IA++ + + V+ ++ L + ++ G E G + +
Sbjct: 53 TKASLATHIAERAA-VEVKAVKAVLAALENVVLGSVHKKGAGEFTLPGLLKITAQVVPAK 111
Query: 57 AARLARAPLAQKVISVEEK---MVPFFRAGKNLKER 89
R + P + K + RA K LK+
Sbjct: 112 KKRFGKDPFTGEERWFPAKPASVRVKARALKKLKDA 147
>gi|29465850|gb|AAM97523.1| basic chromosomal protein HCC4 [Crypthecodinium cohnii]
Length = 123
Score = 35.1 bits (80), Expect = 3.5, Method: Composition-based stats.
Identities = 21/91 (23%), Positives = 36/91 (39%), Gaps = 5/91 (5%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAA-R 59
M K+ L +A +++ +D I+ L + G++ I G RK+ A +
Sbjct: 31 MTKTGLAEALANAT-EVSKKDCASIIESLATICATEVKKTGKLTIPGLVMVKTRKKPATK 89
Query: 60 LARAPLAQKVISV---EEKMVPFFRAGKNLK 87
+ + KV+ V K V K LK
Sbjct: 90 AGKREMFGKVVLVKAQPAKTVVKAYPVKALK 120
>gi|332702648|ref|ZP_08422736.1| hypothetical protein Desaf_1504 [Desulfovibrio africanus str.
Walvis Bay]
gi|332552797|gb|EGJ49841.1| hypothetical protein Desaf_1504 [Desulfovibrio africanus str.
Walvis Bay]
Length = 70
Score = 34.7 bits (79), Expect = 3.7, Method: Composition-based stats.
Identities = 16/85 (18%), Positives = 27/85 (31%), Gaps = 18/85 (21%)
Query: 1 MIKSSLIGTIAKKNPKLNYQD--VEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAA 58
+ + +K P L +D V+++ + +AL N V+I G G S A
Sbjct: 2 ITTQEFTSALKEKMPDLFQKDYDARDTVDIIFACIPRALKNADTVDIPGIGQISAHSEGA 61
Query: 59 RLARAPLAQKVISVEEKMVPFFRAG 83
R F+
Sbjct: 62 R----------------KQVKFKPS 70
>gi|325528108|gb|EGD05311.1| DNA-binding protein BpH2 [Burkholderia sp. TJI49]
Length = 118
Score = 34.7 bits (79), Expect = 3.8, Method: Composition-based stats.
Identities = 18/96 (18%), Positives = 35/96 (36%), Gaps = 9/96 (9%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKR----- 56
K+SL IA++ + + V+ ++ L + ++ G E G + +
Sbjct: 22 TKASLATHIAERAA-VEVKAVKAVLAALENVVLGSVHKKGAGEFTLPGLLKITAQVVPAK 80
Query: 57 AARLARAPLAQKVISVEEK---MVPFFRAGKNLKER 89
R + P + K + RA K LK+
Sbjct: 81 KKRFGKDPFTGEERWFPAKPASVRVKARALKKLKDA 116
>gi|330825850|ref|YP_004389153.1| histone family protein DNA-binding protein [Alicycliphilus
denitrificans K601]
gi|329311222|gb|AEB85637.1| histone family protein DNA-binding protein [Alicycliphilus
denitrificans K601]
Length = 134
Score = 34.7 bits (79), Expect = 3.8, Method: Composition-based stats.
Identities = 15/96 (15%), Positives = 35/96 (36%), Gaps = 9/96 (9%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRA---- 57
KS+L+ +A+++ + + V+ ++ L + ++ G G + +
Sbjct: 38 TKSALVAHLAEQSS-VEPKAVKAVLAALESAVLGSVHKKGAGAFVLPGLLKIDVQKVPAK 96
Query: 58 -ARLARAPLAQKVIS---VEEKMVPFFRAGKNLKER 89
R P ++ + RA K LK+
Sbjct: 97 PKRKGINPFTKEEQVFAAKPATVRIKARALKKLKDA 132
>gi|328947219|ref|YP_004364556.1| hypothetical protein Tresu_0300 [Treponema succinifaciens DSM 2489]
gi|328447543|gb|AEB13259.1| hypothetical protein Tresu_0300 [Treponema succinifaciens DSM 2489]
Length = 255
Score = 34.7 bits (79), Expect = 4.0, Method: Composition-based stats.
Identities = 18/85 (21%), Positives = 38/85 (44%), Gaps = 5/85 (5%)
Query: 6 LIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLARAPL 65
LI KK+ +N + I++++ E+ +AL G V + G+F + A +
Sbjct: 45 LIARTQKKDIGVNAITAKHILSLIKAEIIEALQRGESVNLMDLGTFYI----AASGTSGN 100
Query: 66 AQKVISVEEKMVPFFRAGKNLKERL 90
+ ++ K++ F + K E +
Sbjct: 101 TAETAEIK-KLLVKFTSSKETNEAV 124
>gi|223983367|ref|ZP_03633553.1| hypothetical protein HOLDEFILI_00833 [Holdemania filiformis DSM
12042]
gi|223964539|gb|EEF68865.1| hypothetical protein HOLDEFILI_00833 [Holdemania filiformis DSM
12042]
Length = 550
Score = 34.7 bits (79), Expect = 4.0, Method: Composition-based stats.
Identities = 7/41 (17%), Positives = 15/41 (36%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGG 41
M K + + K L +++ I++ + L G
Sbjct: 1 MTKKEFLEKLEHKLHLLKRDEIQDILDEYSGYIDNKLQEGK 41
>gi|218129855|ref|ZP_03458659.1| hypothetical protein BACEGG_01436 [Bacteroides eggerthii DSM 20697]
gi|217987965|gb|EEC54290.1| hypothetical protein BACEGG_01436 [Bacteroides eggerthii DSM 20697]
Length = 204
Score = 34.7 bits (79), Expect = 4.1, Method: Composition-based stats.
Identities = 18/95 (18%), Positives = 31/95 (32%), Gaps = 11/95 (11%)
Query: 3 KSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLAR 62
K I + + ++ +E + ++E+ L G VE+ G FS R
Sbjct: 34 KKEFIDRVH-RFTGISRSVLEGSMTAFMDELRDCLVGGWTVELGELGYFSP-SLNCRPVM 91
Query: 63 APLAQKVISVEEKMV----PFFRAGKNLKERLNSP 93
+ V V FR ++ LN
Sbjct: 92 -----EKKEVRAASVSLRGLNFRVSRDFYRTLNEK 121
>gi|210634362|ref|ZP_03298088.1| hypothetical protein COLSTE_02010 [Collinsella stercoris DSM
13279]
gi|210158841|gb|EEA89812.1| hypothetical protein COLSTE_02010 [Collinsella stercoris DSM
13279]
Length = 267
Score = 34.7 bits (79), Expect = 4.4, Method: Composition-based stats.
Identities = 8/40 (20%), Positives = 19/40 (47%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANG 40
M K + + + KL + +VE+ + E ++ + +G
Sbjct: 1 MTKQEFLSKLERALGKLPHAEVEQALAFYDEAISDRMEDG 40
>gi|218260516|ref|ZP_03475786.1| hypothetical protein PRABACTJOHN_01449 [Parabacteroides johnsonii
DSM 18315]
gi|218224501|gb|EEC97151.1| hypothetical protein PRABACTJOHN_01449 [Parabacteroides johnsonii
DSM 18315]
Length = 194
Score = 34.7 bits (79), Expect = 4.6, Method: Composition-based stats.
Identities = 17/74 (22%), Positives = 34/74 (45%), Gaps = 1/74 (1%)
Query: 17 LNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLARAPLAQKVISVEEKM 76
+N D++ +++ L + + + L+ G VE+ G G FS + + + I
Sbjct: 39 VNSADIKGVLDALSKYVGRELSYGSCVELDGLGFFSPALKTFKDGVNEK-GEEIYKVRVD 97
Query: 77 VPFFRAGKNLKERL 90
FR K LK+++
Sbjct: 98 GVNFRCAKKLKKQV 111
>gi|329960119|ref|ZP_08298583.1| putative DNA-binding protein [Bacteroides fluxus YIT 12057]
gi|328533071|gb|EGF59844.1| putative DNA-binding protein [Bacteroides fluxus YIT 12057]
Length = 202
Score = 34.7 bits (79), Expect = 4.7, Method: Composition-based stats.
Identities = 21/94 (22%), Positives = 39/94 (41%), Gaps = 10/94 (10%)
Query: 4 SSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLARA 63
L+ + K D+E ++ L + +T + G RVE+ FG F+ + ++RL
Sbjct: 35 KELLD-LTAKFSGFRKGDIEGVLISLFDTVTHLINRGFRVELGEFGYFTGKVTSSRLV-- 91
Query: 64 PLAQKVISVEEKMV----PFFRAGKNLKERLNSP 93
+K + + V FR K+ L+
Sbjct: 92 ---EKNTDIHAQSVKFNNVNFRPSATFKKALDGK 122
>gi|298479855|ref|ZP_06998055.1| DNA-binding protein [Bacteroides sp. D22]
gi|298274245|gb|EFI15806.1| DNA-binding protein [Bacteroides sp. D22]
Length = 236
Score = 34.4 bits (78), Expect = 4.8, Method: Composition-based stats.
Identities = 14/91 (15%), Positives = 37/91 (40%), Gaps = 11/91 (12%)
Query: 4 SSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLARA 63
++ IA+ + D+E + + ++++ L +G V++ G FS + AR
Sbjct: 69 QQIVKEIAQASS-FTPADIEGVQLAIENKISEYLVSGHHVQLGNLGYFSAK-LKARPVMD 126
Query: 64 PLAQKVISVEEKMV----PFFRAGKNLKERL 90
+ + + FR + ++++
Sbjct: 127 AK-----EIHAQSIYFDNVNFRPSSSFRKKV 152
>gi|295084777|emb|CBK66300.1| DNA-binding protein, histone-like, putative [Bacteroides
xylanisolvens XB1A]
Length = 202
Score = 34.4 bits (78), Expect = 4.9, Method: Composition-based stats.
Identities = 14/91 (15%), Positives = 37/91 (40%), Gaps = 11/91 (12%)
Query: 4 SSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLARA 63
++ IA+ + D+E + + ++++ L +G V++ G FS + AR
Sbjct: 35 QQIVKEIAQASS-FTPADIEGVQLAIENKISEYLVSGHHVQLGNLGYFSAK-LKARPVMD 92
Query: 64 PLAQKVISVEEKMV----PFFRAGKNLKERL 90
+ + + FR + ++++
Sbjct: 93 AK-----EIHAQSIYFDNVNFRPSSSFRKKV 118
>gi|256841119|ref|ZP_05546626.1| conserved hypothetical protein [Parabacteroides sp. D13]
gi|256736962|gb|EEU50289.1| conserved hypothetical protein [Parabacteroides sp. D13]
Length = 253
Score = 34.4 bits (78), Expect = 4.9, Method: Composition-based stats.
Identities = 22/91 (24%), Positives = 37/91 (40%), Gaps = 11/91 (12%)
Query: 5 SLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLARAP 64
I AK + D++ I+ + + M L G VE+ G G+FSV +R
Sbjct: 80 EFISR-AKSRSSFSPADMKGILQLFQDMMVDFLMFGYNVELEGIGTFSV-SLKSRPVM-- 135
Query: 65 LAQKVISVEEK----MVPFFRAGKNLKERLN 91
+ + + FR+ K L++RL
Sbjct: 136 ---EKNEIRAESIHFKDVKFRSSKELRDRLK 163
>gi|222111316|ref|YP_002553580.1| histone family protein DNA-binding protein [Acidovorax ebreus TPSY]
gi|221730760|gb|ACM33580.1| histone family protein DNA-binding protein [Acidovorax ebreus TPSY]
Length = 134
Score = 34.4 bits (78), Expect = 4.9, Method: Composition-based stats.
Identities = 15/96 (15%), Positives = 35/96 (36%), Gaps = 9/96 (9%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRA---- 57
KS+L+ +A+++ + + V+ ++ L + ++ G G + +
Sbjct: 38 TKSALVAHLAEQSS-VEPKAVKAVLAALESAVLGSVHKKGAGAFVLPGLLKIDVQKVPAK 96
Query: 58 -ARLARAPLAQKVIS---VEEKMVPFFRAGKNLKER 89
R P ++ + RA K LK+
Sbjct: 97 PKRKGINPFTKEEQVFAAKPATVRIKARALKRLKDA 132
>gi|107026732|ref|YP_624243.1| histone-like DNA-binding protein [Burkholderia cenocepacia AU 1054]
gi|170735932|ref|YP_001777192.1| histone family protein DNA-binding protein [Burkholderia
cenocepacia MC0-3]
gi|105896106|gb|ABF79270.1| histone-like DNA-binding protein [Burkholderia cenocepacia AU 1054]
gi|169818120|gb|ACA92702.1| histone family protein DNA-binding protein [Burkholderia
cenocepacia MC0-3]
Length = 149
Score = 34.4 bits (78), Expect = 5.0, Method: Composition-based stats.
Identities = 18/96 (18%), Positives = 35/96 (36%), Gaps = 9/96 (9%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKR----- 56
K+SL IA++ + + V+ ++ L + ++ G E G + +
Sbjct: 53 TKASLATHIAERAA-VEVKAVKAVLVALENVVLGSVHKKGAGEFTLPGLLKITAQVVPAK 111
Query: 57 AARLARAPLAQKVISVEEK---MVPFFRAGKNLKER 89
R + P + K + RA K LK+
Sbjct: 112 KKRFGKDPFTGEERWFPAKPASVRVKARALKKLKDA 147
>gi|78062953|ref|YP_372861.1| histone-like DNA-binding protein [Burkholderia sp. 383]
gi|77970838|gb|ABB12217.1| Histone-like DNA-binding protein [Burkholderia sp. 383]
Length = 149
Score = 34.4 bits (78), Expect = 5.0, Method: Composition-based stats.
Identities = 18/96 (18%), Positives = 35/96 (36%), Gaps = 9/96 (9%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKR----- 56
K+SL IA++ + + V+ ++ L + ++ G E G + +
Sbjct: 53 TKASLATHIAERAA-VEVKAVKAVLVALENVVLGSVHKKGAGEFTLPGLLKITAQVVPAK 111
Query: 57 AARLARAPLAQKVISVEEK---MVPFFRAGKNLKER 89
R + P + K + RA K LK+
Sbjct: 112 KKRFGKDPFTGEERWFPAKPASVRVKARALKKLKDA 147
>gi|309779566|ref|ZP_07674327.1| DNA-binding protein BpH2 [Ralstonia sp. 5_7_47FAA]
gi|308921807|gb|EFP67443.1| DNA-binding protein BpH2 [Ralstonia sp. 5_7_47FAA]
Length = 141
Score = 34.4 bits (78), Expect = 5.2, Method: Composition-based stats.
Identities = 19/100 (19%), Positives = 34/100 (34%), Gaps = 10/100 (10%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRK-----R 56
K+SL+ +A++ ++ L + +L G E G F V
Sbjct: 43 TKASLVSHLAEQAAVDAKAVKAVLL-HLENTIVASLHKKGAGEFTLPGLFKVTSVKVPAT 101
Query: 57 AARLARAPLAQKVI---SVEEKMVPFFRAGKNLKE-RLNS 92
R + P + + RA K +K+ +NS
Sbjct: 102 KRRFGKNPFTGVDQWFEAKPATVRVKVRALKKVKDAAINS 141
>gi|89895231|ref|YP_518718.1| hypothetical protein DSY2485 [Desulfitobacterium hafniense Y51]
gi|219669663|ref|YP_002460098.1| thiolase [Desulfitobacterium hafniense DCB-2]
gi|89334679|dbj|BAE84274.1| hypothetical protein [Desulfitobacterium hafniense Y51]
gi|219539923|gb|ACL21662.1| Thiolase [Desulfitobacterium hafniense DCB-2]
Length = 397
Score = 34.4 bits (78), Expect = 5.3, Method: Composition-based stats.
Identities = 9/55 (16%), Positives = 19/55 (34%)
Query: 7 IGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLA 61
+ K + +DV+++ E+ ALAN + R + +
Sbjct: 162 AENVVAKAGGITKEDVDRVTARRYEQYNDALANDRAFQKRYMFPVEYKISKKKTG 216
>gi|218129040|ref|ZP_03457844.1| hypothetical protein BACEGG_00613 [Bacteroides eggerthii DSM 20697]
gi|317477497|ref|ZP_07936723.1| hypothetical protein HMPREF1016_03708 [Bacteroides eggerthii
1_2_48FAA]
gi|217988816|gb|EEC55134.1| hypothetical protein BACEGG_00613 [Bacteroides eggerthii DSM 20697]
gi|316906361|gb|EFV28089.1| hypothetical protein HMPREF1016_03708 [Bacteroides eggerthii
1_2_48FAA]
Length = 164
Score = 34.4 bits (78), Expect = 5.5, Method: Composition-based stats.
Identities = 23/93 (24%), Positives = 37/93 (39%), Gaps = 18/93 (19%)
Query: 6 LIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVR-------KRAA 58
L I +KN + DV+ ++ L+EE+ LANG +V++ G+ + K
Sbjct: 40 LAANI-QKNCAMTKGDVKHVIEALVEEIQTNLANGDKVKLNLLGTLHMTFRCPGVEKSED 98
Query: 59 RLARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
R K+ F K LK +N
Sbjct: 99 CTVRNI---------SKVNIRFVPDKELK-LVN 121
>gi|237508863|ref|ZP_04521578.1| BpH2 [Burkholderia pseudomallei MSHR346]
gi|238563039|ref|ZP_04610360.1| BpH2 [Burkholderia mallei GB8 horse 4]
gi|242312291|ref|ZP_04811308.1| histone H1 homolog BpH2 [Burkholderia pseudomallei 1106b]
gi|251766894|ref|ZP_02265296.2| histone H1 homolog BpH2 [Burkholderia mallei PRL-20]
gi|254201148|ref|ZP_04907513.1| histone H1 [Burkholderia mallei FMH]
gi|254205119|ref|ZP_04911472.1| histone H1 [Burkholderia mallei JHU]
gi|147748760|gb|EDK55835.1| histone H1 [Burkholderia mallei FMH]
gi|147754705|gb|EDK61769.1| histone H1 [Burkholderia mallei JHU]
gi|235001068|gb|EEP50492.1| BpH2 [Burkholderia pseudomallei MSHR346]
gi|238521462|gb|EEP84913.1| BpH2 [Burkholderia mallei GB8 horse 4]
gi|242135530|gb|EES21933.1| histone H1 homolog BpH2 [Burkholderia pseudomallei 1106b]
gi|243064519|gb|EES46705.1| histone H1 homolog BpH2 [Burkholderia mallei PRL-20]
Length = 158
Score = 34.4 bits (78), Expect = 5.5, Method: Composition-based stats.
Identities = 18/96 (18%), Positives = 34/96 (35%), Gaps = 9/96 (9%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKR----- 56
K+SL IA++ + + V+ ++ L + ++ G E G + +
Sbjct: 62 TKASLATHIAERAA-VEVKAVKAVLAALENVVLGSIHKKGAGEFTLPGLLKITAQAVPAK 120
Query: 57 AARLARAPLAQKVISVEEK---MVPFFRAGKNLKER 89
R + P K + RA K LK+
Sbjct: 121 KKRFGKDPFTGAERWFPAKPASVRVKARALKKLKDA 156
>gi|225871452|ref|YP_002747399.1| hypothetical protein SEQ_2198 [Streptococcus equi subsp. equi
4047]
gi|225700856|emb|CAW95595.1| hypothetical protein SEQ_2198 [Streptococcus equi subsp. equi
4047]
Length = 351
Score = 34.4 bits (78), Expect = 5.5, Method: Composition-based stats.
Identities = 5/29 (17%), Positives = 14/29 (48%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNML 29
M K + + ++ L +D ++I++
Sbjct: 1 MTKQDFLDKLKQQINHLPQKDYQEIIDHF 29
>gi|225869447|ref|YP_002745395.1| hypothetical protein SZO_19020 [Streptococcus equi subsp.
zooepidemicus]
gi|225702723|emb|CAX00857.1| hypothetical protein SZO_19020 [Streptococcus equi subsp.
zooepidemicus]
Length = 351
Score = 34.4 bits (78), Expect = 5.6, Method: Composition-based stats.
Identities = 5/29 (17%), Positives = 14/29 (48%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNML 29
M K + + ++ L +D ++I++
Sbjct: 1 MTKQDFLDKLKQQINHLPQKDYQEIIDHF 29
>gi|189459607|ref|ZP_03008392.1| hypothetical protein BACCOP_00233 [Bacteroides coprocola DSM 17136]
gi|189433689|gb|EDV02674.1| hypothetical protein BACCOP_00233 [Bacteroides coprocola DSM 17136]
Length = 136
Score = 34.4 bits (78), Expect = 5.8, Method: Composition-based stats.
Identities = 19/91 (20%), Positives = 32/91 (35%), Gaps = 9/91 (9%)
Query: 7 IGTIAKKNPKL---NYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLARA 63
I +A + ++ D ++ L M L G V + GSF +
Sbjct: 36 IREMADRIQQMCTVTRADTMAVLISLGTVMRDGLCAGEIVRLGDLGSFQIGLNGEGSV-- 93
Query: 64 PLAQKVISVE--EKMVPFFRAGKNLKERLNS 92
++ +K FR G +L + LNS
Sbjct: 94 --TEEEYHTGLIKKAHINFRPGADLSDILNS 122
>gi|319943530|ref|ZP_08017812.1| DNA-binding protein BpH2 [Lautropia mirabilis ATCC 51599]
gi|319743345|gb|EFV95750.1| DNA-binding protein BpH2 [Lautropia mirabilis ATCC 51599]
Length = 102
Score = 34.4 bits (78), Expect = 5.9, Method: Composition-based stats.
Identities = 15/96 (15%), Positives = 30/96 (31%), Gaps = 9/96 (9%)
Query: 2 IKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIR-----GFGSFSVRKR 56
K+ L +A++ V+ ++ L + ++ G E G V +
Sbjct: 6 TKAGLAQHLAEQTGVETKA-VKAVMAALELTILASVHKKGAREFTLPGLLKIGVIDVPAK 64
Query: 57 AARLARAPLAQKVIS---VEEKMVPFFRAGKNLKER 89
R P + + RA K +K+
Sbjct: 65 KKRRGIDPFTGQEREFAAKPATVRIKVRALKKIKDA 100
>gi|299146634|ref|ZP_07039702.1| conserved hypothetical protein [Bacteroides sp. 3_1_23]
gi|298517125|gb|EFI41006.1| conserved hypothetical protein [Bacteroides sp. 3_1_23]
Length = 206
Score = 34.4 bits (78), Expect = 6.0, Method: Composition-based stats.
Identities = 18/93 (19%), Positives = 39/93 (41%), Gaps = 5/93 (5%)
Query: 3 KSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLAR 62
K + ++ + NY ++ +V ++++E+ +AL+ G VE+ G FS+ +
Sbjct: 34 KKEFLERVSHSSQTFNYNVIDAVVGIVIDELAEALSEGYVVELGELGHFSISLKCTHKVM 93
Query: 63 APLAQKVISVEE--KMVPFFRAGKNLKERLNSP 93
++ I E R K K ++
Sbjct: 94 ---TKREIRAESICFDNVHLRTSKEFKRKIKRE 123
>gi|289664570|ref|ZP_06486151.1| bacterial DNA-binding protein [Xanthomonas campestris pv.
vasculorum NCPPB702]
Length = 141
Score = 34.4 bits (78), Expect = 6.2, Method: Composition-based stats.
Identities = 17/95 (17%), Positives = 31/95 (32%), Gaps = 9/95 (9%)
Query: 3 KSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRK-----RA 57
K+ L+ IA+ +L +DV ++ L +L+ G G + +
Sbjct: 46 KTGLVAHIAEST-QLAPKDVRAVLASLEATAHASLSKKGVGTFTIPGMLKLTTVHVPAKP 104
Query: 58 ARLARAPLAQKVIS---VEEKMVPFFRAGKNLKER 89
R P ++ R K LK+
Sbjct: 105 KRKGINPFTKEEQIFAAKPATSKLKSRVMKRLKDA 139
>gi|237714806|ref|ZP_04545287.1| conserved hypothetical protein [Bacteroides sp. D1]
gi|262406920|ref|ZP_06083469.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
gi|229445131|gb|EEO50922.1| conserved hypothetical protein [Bacteroides sp. D1]
gi|262355623|gb|EEZ04714.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
Length = 236
Score = 34.4 bits (78), Expect = 6.2, Method: Composition-based stats.
Identities = 14/91 (15%), Positives = 37/91 (40%), Gaps = 11/91 (12%)
Query: 4 SSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLARA 63
++ IA+ + D+E + + ++++ L +G V++ G FS + AR
Sbjct: 69 QQIVKEIAQASS-FTPADIEGVQLAIENKISEYLVSGHHVQLGNLGYFSAK-LKARPVMD 126
Query: 64 PLAQKVISVEEKMV----PFFRAGKNLKERL 90
+ + + FR + ++++
Sbjct: 127 AK-----EIHAQSIYFDNVNFRPSSSFRKKV 152
>gi|284161477|ref|YP_003400100.1| deoxyhypusine synthase [Archaeoglobus profundus DSM 5631]
gi|284011474|gb|ADB57427.1| deoxyhypusine synthase [Archaeoglobus profundus DSM 5631]
Length = 311
Score = 34.0 bits (77), Expect = 6.3, Method: Composition-based stats.
Identities = 7/36 (19%), Positives = 15/36 (41%), Gaps = 1/36 (2%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQA 36
M + LI + K+ +D+ V++ E +
Sbjct: 12 MTVNELIKELY-KSGGFTAKDLAVAVDIFEEMIKDE 46
>gi|195979005|ref|YP_002124249.1| hypothetical membrane associated protein [Streptococcus equi
subsp. zooepidemicus MGCS10565]
gi|195975710|gb|ACG63236.1| hypothetical membrane associated protein [Streptococcus equi
subsp. zooepidemicus MGCS10565]
Length = 351
Score = 34.0 bits (77), Expect = 6.3, Method: Composition-based stats.
Identities = 5/29 (17%), Positives = 14/29 (48%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNML 29
M K + + ++ L +D ++I++
Sbjct: 1 MTKQDFLDKLKQQINHLPQKDYQEIIDHF 29
>gi|257126521|ref|YP_003164635.1| surface antigen (D15) [Leptotrichia buccalis C-1013-b]
gi|257050460|gb|ACV39644.1| surface antigen (D15) [Leptotrichia buccalis C-1013-b]
Length = 788
Score = 34.0 bits (77), Expect = 6.4, Method: Composition-based stats.
Identities = 10/63 (15%), Positives = 20/63 (31%), Gaps = 6/63 (9%)
Query: 27 NMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLARAPLAQKVISVEEKMVPF-FRAGKN 85
+ + +++ F F + R R P+ K + + F K
Sbjct: 686 DKFHATIENRTKINDTIQLVAF--FDIGNAWQREGRDPVTGKRVYKPNRKEAHDF---KE 740
Query: 86 LKE 88
LK+
Sbjct: 741 LKK 743
>gi|313205067|ref|YP_004043724.1| DNA-binding protein [Paludibacter propionicigenes WB4]
gi|312444383|gb|ADQ80739.1| DNA-binding protein [Paludibacter propionicigenes WB4]
Length = 127
Score = 34.0 bits (77), Expect = 6.6, Method: Composition-based stats.
Identities = 19/95 (20%), Positives = 42/95 (44%), Gaps = 4/95 (4%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAA-R 59
+ + IA+ + ++ DV ++N L + + + L NG V FG+F + ++
Sbjct: 32 ITLKQISREIAENSSTVSDTDVLAVLNDLTKILNRHLKNGEIVRFGDFGTFQINIKSEGA 91
Query: 60 LARAPLAQKVISVEEKMVPFFRAGKNLKERLNSPD 94
+ +I+ +R G +++E LN+
Sbjct: 92 ESEEKFTTAMITD---TKVTYRPGSDVREMLNNIK 123
>gi|289804555|ref|ZP_06535184.1| hypothetical protein Salmonellaentericaenterica_08762 [Salmonella
enterica subsp. enterica serovar Typhi str. AG3]
Length = 22
Score = 34.0 bits (77), Expect = 6.9, Method: Composition-based stats.
Identities = 10/19 (52%), Positives = 13/19 (68%)
Query: 73 EEKMVPFFRAGKNLKERLN 91
E K VP F+ GK L++R N
Sbjct: 1 EGKYVPHFKPGKELRDRAN 19
>gi|294647580|ref|ZP_06725155.1| putative DNA-binding protein [Bacteroides ovatus SD CC 2a]
gi|294808257|ref|ZP_06767018.1| putative DNA-binding protein [Bacteroides xylanisolvens SD CC 1b]
gi|292637072|gb|EFF55515.1| putative DNA-binding protein [Bacteroides ovatus SD CC 2a]
gi|294444541|gb|EFG13247.1| putative DNA-binding protein [Bacteroides xylanisolvens SD CC 1b]
Length = 202
Score = 34.0 bits (77), Expect = 7.0, Method: Composition-based stats.
Identities = 14/91 (15%), Positives = 37/91 (40%), Gaps = 11/91 (12%)
Query: 4 SSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLARA 63
++ IA+ + D+E + + ++++ L +G V++ G FS + AR
Sbjct: 35 QQIVKEIAQASS-FTPADIEGVQLAIENKISEYLVSGHHVQLGNLGYFSAK-LKARPVMD 92
Query: 64 PLAQKVISVEEKMV----PFFRAGKNLKERL 90
+ + + FR + ++++
Sbjct: 93 AK-----EIHAQSIYFDNVNFRPSSSFRKKV 118
>gi|330893726|gb|EGH26387.1| hypothetical protein PSYMO_35066 [Pseudomonas syringae pv. mori
str. 301020]
Length = 39
Score = 34.0 bits (77), Expect = 7.3, Method: Composition-based stats.
Identities = 7/27 (25%), Positives = 11/27 (40%)
Query: 66 AQKVISVEEKMVPFFRAGKNLKERLNS 92
I + K V F K L + +N+
Sbjct: 2 TGAAIEIAAKKVIKFVPAKRLNDAINN 28
>gi|325092386|gb|EGC45696.1| conserved hypothetical protein [Ajellomyces capsulatus H88]
Length = 401
Score = 33.6 bits (76), Expect = 8.5, Method: Composition-based stats.
Identities = 15/69 (21%), Positives = 28/69 (40%), Gaps = 4/69 (5%)
Query: 1 MIKSS----LIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKR 56
M KS+ L+ ++ + + + E IV+ + + + N R S R+R
Sbjct: 316 MSKSTAEPPLLSSVHDQETGIPQAENESIVDEIENIVKKENDNSERGTNVDDISPEERRR 375
Query: 57 AARLARAPL 65
+L R P
Sbjct: 376 QEQLPRNPK 384
>gi|150005202|ref|YP_001299946.1| hypothetical protein BVU_2672 [Bacteroides vulgatus ATCC 8482]
gi|319642715|ref|ZP_07997359.1| hypothetical protein HMPREF9011_02959 [Bacteroides sp. 3_1_40A]
gi|149933626|gb|ABR40324.1| conserved hypothetical protein [Bacteroides vulgatus ATCC 8482]
gi|317385650|gb|EFV66585.1| hypothetical protein HMPREF9011_02959 [Bacteroides sp. 3_1_40A]
Length = 142
Score = 33.6 bits (76), Expect = 8.5, Method: Composition-based stats.
Identities = 18/84 (21%), Positives = 30/84 (35%), Gaps = 7/84 (8%)
Query: 5 SLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLARAP 64
+ I +K + DV ++ L + + +AL G V + G+F + R
Sbjct: 38 EMADRI-QKTCTVTRADVMAVLVALEDVIMEALEGGEIVRLADLGTFQIGLS----GRGA 92
Query: 65 LAQKVISVE--EKMVPFFRAGKNL 86
+ V K FR G L
Sbjct: 93 ETEDTYDVSMIRKARINFRPGIAL 116
>gi|160892044|ref|ZP_02073047.1| hypothetical protein BACUNI_04504 [Bacteroides uniformis ATCC 8492]
gi|156858522|gb|EDO51953.1| hypothetical protein BACUNI_04504 [Bacteroides uniformis ATCC 8492]
Length = 265
Score = 33.6 bits (76), Expect = 8.6, Method: Composition-based stats.
Identities = 20/90 (22%), Positives = 37/90 (41%), Gaps = 8/90 (8%)
Query: 3 KSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGF-GSFSVRKRAARLA 61
K+ ++ + KNP + + + + ++ E + +AL NG V F G R A + A
Sbjct: 35 KNIILDRMVAKNPGVRRETMALGIELMEEVIAEALMNGESVNTGLFRGVAQFRGVAKQNA 94
Query: 62 RAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
+ + F GK L+E +
Sbjct: 95 WNAVTNSIY-------VSFTQGKTLREAIK 117
>gi|257469065|ref|ZP_05633159.1| hypothetical protein FulcA4_06955 [Fusobacterium ulcerans ATCC
49185]
gi|317063311|ref|ZP_07927796.1| predicted protein [Fusobacterium ulcerans ATCC 49185]
gi|313688987|gb|EFS25822.1| predicted protein [Fusobacterium ulcerans ATCC 49185]
Length = 96
Score = 33.6 bits (76), Expect = 9.6, Method: Composition-based stats.
Identities = 14/74 (18%), Positives = 36/74 (48%)
Query: 13 KNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLARAPLAQKVISV 72
KN +++ ++ E+ + M++E + +A+A ++ + G F + R + + K +
Sbjct: 17 KNQEVSLKEAEEDIEMMVESIAEAIAMENELKFKNKGKFILEDRKRKTVQNIHTGKKTKL 76
Query: 73 EEKMVPFFRAGKNL 86
K + + K+L
Sbjct: 77 PPKKIFKYIQPKSL 90
>gi|288802083|ref|ZP_06407524.1| putative non-specific DNA binding protein [Prevotella
melaninogenica D18]
gi|288335518|gb|EFC73952.1| putative non-specific DNA binding protein [Prevotella
melaninogenica D18]
Length = 157
Score = 33.6 bits (76), Expect = 9.7, Method: Composition-based stats.
Identities = 19/91 (20%), Positives = 40/91 (43%), Gaps = 14/91 (15%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
M + ++ + +K ++ DV+ +++ L E+ +AL NG V + GSF + ++
Sbjct: 30 MSLAQIVKRV-EKRSTVSSADVKAVLDALQYEVMEALENGNTVRLGDLGSFRLTMKSQ-- 86
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLN 91
+ E K G L +++N
Sbjct: 87 ------GAPTAAEAKKK-----GAQLIKQVN 106
>gi|160885219|ref|ZP_02066222.1| hypothetical protein BACOVA_03217 [Bacteroides ovatus ATCC 8483]
gi|156109569|gb|EDO11314.1| hypothetical protein BACOVA_03217 [Bacteroides ovatus ATCC 8483]
Length = 202
Score = 33.6 bits (76), Expect = 9.9, Method: Composition-based stats.
Identities = 14/91 (15%), Positives = 37/91 (40%), Gaps = 11/91 (12%)
Query: 4 SSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLARA 63
++ IA+ + D+E + + ++++ L +G V++ G FS + AR
Sbjct: 35 QQIVKEIAQASS-FTPADIEGVQLAIENKISEYLVSGHHVQLGNLGYFSAK-LKARPVMD 92
Query: 64 PLAQKVISVEEKMV----PFFRAGKNLKERL 90
+ + + FR + ++++
Sbjct: 93 AK-----EIHAQSIYFDNVNFRPSSSFRKKV 118
Database: nr
Posted date: May 22, 2011 12:22 AM
Number of letters in database: 999,999,966
Number of sequences in database: 2,987,313
Database: /data/usr2/db/fasta/nr.01
Posted date: May 22, 2011 12:30 AM
Number of letters in database: 999,999,796
Number of sequences in database: 2,903,041
Database: /data/usr2/db/fasta/nr.02
Posted date: May 22, 2011 12:36 AM
Number of letters in database: 999,999,281
Number of sequences in database: 2,904,016
Database: /data/usr2/db/fasta/nr.03
Posted date: May 22, 2011 12:41 AM
Number of letters in database: 999,999,960
Number of sequences in database: 2,935,328
Database: /data/usr2/db/fasta/nr.04
Posted date: May 22, 2011 12:46 AM
Number of letters in database: 842,794,627
Number of sequences in database: 2,394,679
Lambda K H
0.311 0.164 0.494
Lambda K H
0.267 0.0505 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,119,812,554
Number of Sequences: 14124377
Number of extensions: 39894694
Number of successful extensions: 215846
Number of sequences better than 10.0: 4621
Number of HSP's better than 10.0 without gapping: 4225
Number of HSP's successfully gapped in prelim test: 396
Number of HSP's that attempted gapping in prelim test: 208695
Number of HSP's gapped (non-prelim): 4661
length of query: 100
length of database: 4,842,793,630
effective HSP length: 69
effective length of query: 31
effective length of database: 3,868,211,617
effective search space: 119914560127
effective search space used: 119914560127
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.0 bits)
S2: 76 (33.6 bits)