BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= gi|254780748|ref|YP_003065161.1| integration host factor, beta
subunit [Candidatus Liberibacter asiaticus str. psy62]
(100 letters)
Database: las_proteome
1233 sequences; 328,796 total letters
Searching...................................................done
>gi|254780748|ref|YP_003065161.1| integration host factor, beta subunit [Candidatus Liberibacter
asiaticus str. psy62]
Length = 100
Score = 201 bits (511), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 100/100 (100%), Positives = 100/100 (100%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL
Sbjct: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDSTLSNS 100
ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDSTLSNS
Sbjct: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERLNSPDSTLSNS 100
>gi|254780496|ref|YP_003064909.1| integration host factor subunit alpha [Candidatus Liberibacter
asiaticus str. psy62]
Length = 114
Score = 41.6 bits (96), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 22/90 (24%), Positives = 49/90 (54%), Gaps = 1/90 (1%)
Query: 1 MIKSSLIGTIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARL 60
+ +S L+ +I+K+ L+ +D + V L E+ + G ++I F +F V+++ +R+
Sbjct: 5 ITRSDLVKSISKEFG-LSRKDSTRFVTTLFNEICDSAVRGEAIKISSFATFHVKQKGSRV 63
Query: 61 ARAPLAQKVISVEEKMVPFFRAGKNLKERL 90
R + + ++ + V F+A LK+R+
Sbjct: 64 GRNLQTNQEVKIDPRRVVVFKASSILKKRI 93
>gi|254780829|ref|YP_003065242.1| ATP-dependent protease ATP-binding subunit [Candidatus Liberibacter
asiaticus str. psy62]
Length = 437
Score = 22.7 bits (47), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 12/42 (28%), Positives = 22/42 (52%), Gaps = 3/42 (7%)
Query: 47 GFGSFSVRKRAARLARAPLAQKVISVEEKMVPFFRAGKNLKE 88
G G ++ +R ARLA AP + ++ K G+N+++
Sbjct: 63 GVGKTAISRRLARLAGAPFIKVEVT---KFTEIGYVGRNVEQ 101
>gi|254781000|ref|YP_003065413.1| tRNA (uracil-5-)-methyltransferase [Candidatus Liberibacter
asiaticus str. psy62]
Length = 371
Score = 21.2 bits (43), Expect = 4.1, Method: Composition-based stats.
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 11 AKKNPKLNYQDVEKIVNMLLEEMTQAL 37
A+ N N+ + KIV M +E TQA+
Sbjct: 247 ARYNIAANHVNNVKIVRMSSKEFTQAM 273
>gi|254781120|ref|YP_003065533.1| radical SAM protein [Candidatus Liberibacter asiaticus str.
psy62]
Length = 384
Score = 20.8 bits (42), Expect = 5.4, Method: Composition-based stats.
Identities = 8/25 (32%), Positives = 15/25 (60%)
Query: 17 LNYQDVEKIVNMLLEEMTQALANGG 41
+N+ E ++ M+ EE+ +AL G
Sbjct: 1 MNFLKKESLIGMMREELEEALLKIG 25
>gi|254780464|ref|YP_003064877.1| M16 family peptidase [Candidatus Liberibacter asiaticus str. psy62]
Length = 424
Score = 20.4 bits (41), Expect = 6.4, Method: Composition-based stats.
Identities = 8/20 (40%), Positives = 13/20 (65%)
Query: 14 NPKLNYQDVEKIVNMLLEEM 33
N N D+E+ N++LEE+
Sbjct: 108 NSSFNPSDIERERNVVLEEI 127
>gi|254780814|ref|YP_003065227.1| DNA gyrase subunit B [Candidatus Liberibacter asiaticus str. psy62]
Length = 803
Score = 20.4 bits (41), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 14/62 (22%), Positives = 26/62 (41%), Gaps = 14/62 (22%)
Query: 9 TIAKKNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFSVRKRAARLARAPLAQK 68
+I +P+ + Q EK+V+ + + ++ N G +A L PL K
Sbjct: 331 SIKMPDPRFSSQTKEKLVSSEVRSVVESFVNDG--------------LSAWLEEHPLEAK 376
Query: 69 VI 70
+I
Sbjct: 377 II 378
>gi|254780163|ref|YP_003064576.1| ATP-dependent Clp protease ATP-binding subunit [Candidatus
Liberibacter asiaticus str. psy62]
Length = 798
Score = 20.0 bits (40), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 21/46 (45%), Gaps = 10/46 (21%)
Query: 13 KNPKLNYQDVEKIVNMLLEEMTQALANGGRVEIRGFGSFS-VRKRA 57
KN LNY D + + L NG RVE + SF V +RA
Sbjct: 57 KNNLLNYID---------NDSSNKLKNGFRVECKPTSSFQRVVQRA 93
Database: las_proteome
Posted date: Jun 5, 2011 6:30 PM
Number of letters in database: 328,796
Number of sequences in database: 1233
Lambda K H
0.315 0.130 0.344
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 56,437
Number of Sequences: 1233
Number of extensions: 1822
Number of successful extensions: 9
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of query: 100
length of database: 328,796
effective HSP length: 61
effective length of query: 39
effective length of database: 253,583
effective search space: 9889737
effective search space used: 9889737
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.1 bits)
S2: 32 (16.9 bits)