Query gi|254780749|ref|YP_003065162.1| lipoprotein signal peptidase transmembrane [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 108
No_of_seqs 112 out of 1642
Neff 6.2
Searched_HMMs 23785
Date Mon May 30 13:37:06 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780749.hhm -d /home/congqian_1/database/pdb/pdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2oar_A Large-conductance mecha 44.4 15 0.00063 16.0 7.3 23 34-56 37-59 (174)
2 2vap_A FTSZ, cell division pro 28.5 27 0.0011 14.7 2.2 26 42-67 44-71 (364)
3 1w5f_A Cell division protein F 26.6 30 0.0013 14.5 2.2 26 42-67 28-55 (353)
4 2vaw_A FTSZ, cell division pro 17.0 50 0.0021 13.4 2.8 26 42-67 18-45 (394)
5 1rq2_A Cell division protein F 13.2 64 0.0027 12.8 2.2 25 42-66 18-44 (382)
6 3ddl_A Xanthorhodopsin; carote 12.0 70 0.0029 12.6 4.1 29 74-102 231-259 (273)
7 2r75_1 Cell division protein F 9.9 83 0.0035 12.2 2.5 24 43-66 15-40 (338)
8 2jaf_A Halorhodopsin, HR; chro 7.2 1.1E+02 0.0046 11.6 3.6 29 74-102 233-261 (274)
9 2i68_A Protein EMRE; transmemb 6.9 1.1E+02 0.0048 11.5 4.7 40 43-93 66-105 (137)
10 1pw4_A Glycerol-3-phosphate tr 6.6 1.2E+02 0.005 11.4 9.5 48 50-103 397-444 (451)
No 1
>2oar_A Large-conductance mechanosensitive channel; stretch activated ION channel mechanosensitive, membrane protein; 3.50A {Mycobacterium tuberculosis H37RA} SCOP: f.16.1.1
Probab=44.40 E-value=15 Score=16.04 Aligned_cols=23 Identities=17% Similarity=0.236 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 89999999999887999998976
Q gi|254780749|r 34 IFDIGYILITTGALGNVVDHCLY 56 (108)
Q Consensus 34 ~~~i~l~li~gGaiGNliDR~~~ 56 (108)
..-++.+.|+|+|.|++++-+..
T Consensus 37 ViDLAVgVIIGaAF~~IV~SlV~ 59 (174)
T 2oar_A 37 IVDLAVAVVIGTAFTALVTKFTD 59 (174)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 67777999999989999999998
No 2
>2vap_A FTSZ, cell division protein FTSZ homolog 1; polymerization, tubulin homolog, GTPase, septation, cell cycle, GTP-binding; HET: GDP; 1.70A {Methanocaldococcus jannaschii} SCOP: c.32.1.1 d.79.2.1 PDB: 1w59_A 1w58_1* 1w5a_A* 1w5b_A* 1fsz_A* 1w5e_A*
Probab=28.51 E-value=27 Score=14.74 Aligned_cols=26 Identities=19% Similarity=0.115 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHCC--CCEEEEEE
Q ss_conf 999887999998976312--75776623
Q gi|254780749|r 42 ITTGALGNVVDHCLYGYV--IDYIMIHT 67 (108)
Q Consensus 42 i~gGaiGNliDR~~~G~V--vDfi~~~~ 67 (108)
-+|||=+|.++|+..-.+ +||+-+..
T Consensus 44 GvGGaG~N~vn~m~~~~~~~v~~iaiNT 71 (364)
T 2vap_A 44 GCGGAGNNTITRLKMEGIEGAKTVAINT 71 (364)
T ss_dssp EEHHHHHHHHHHHHHHTCTTEEEEEEES
T ss_pred EECCCHHHHHHHHHHCCCCCCEEEEEEC
T ss_conf 8788279999999983999807999918
No 3
>1w5f_A Cell division protein FTSZ; complete proteome, GTP-binding, multigene family, septation, tubulin, filament, Z-ring, GTPase, domain swapped; HET: G2P; 2.0A {Thermotoga maritima} SCOP: c.32.1.1 d.79.2.1
Probab=26.62 E-value=30 Score=14.47 Aligned_cols=26 Identities=15% Similarity=0.298 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHCC--CCEEEEEE
Q ss_conf 999887999998976312--75776623
Q gi|254780749|r 42 ITTGALGNVVDHCLYGYV--IDYIMIHT 67 (108)
Q Consensus 42 i~gGaiGNliDR~~~G~V--vDfi~~~~ 67 (108)
-+|||=+|.++|+..-.+ +||+.++.
T Consensus 28 GvGGaG~N~vn~m~~~~~~~v~~iainT 55 (353)
T 1w5f_A 28 GVGGAGNNAINRMIEIGIHGVEFVAVNT 55 (353)
T ss_dssp EEHHHHHHHHHHHHHHCCTTEEEEEEES
T ss_pred EECCHHHHHHHHHHHCCCCCCEEEEEEC
T ss_conf 9787189999999983999847999918
No 4
>2vaw_A FTSZ, cell division protein FTSZ; bacterial cell division protein, tubulin homolog, nucleotide-binding, GTPase, septation, cytoplasm; HET: GDP; 2.90A {Pseudomonas aeruginosa} SCOP: c.32.1.1 d.79.2.1
Probab=16.96 E-value=50 Score=13.38 Aligned_cols=26 Identities=31% Similarity=0.441 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHCC--CCEEEEEE
Q ss_conf 999887999998976312--75776623
Q gi|254780749|r 42 ITTGALGNVVDHCLYGYV--IDYIMIHT 67 (108)
Q Consensus 42 i~gGaiGNliDR~~~G~V--vDfi~~~~ 67 (108)
-+|||=+|.++|+..-.+ |||+-++.
T Consensus 18 GvGG~G~N~v~~m~~~~~~~v~~ia~NT 45 (394)
T 2vaw_A 18 GVGGGGGNAVNHMAKNNVEGVEFICANT 45 (394)
T ss_dssp EEHHHHHHHHHHHHTTTCCSEEEEEEES
T ss_pred EECCCCHHHHHHHHHCCCCCCEEEEEEC
T ss_conf 8477737899999974999836999937
No 5
>1rq2_A Cell division protein FTSZ; cell cycle, tubulin, GTPase, signaling protein; HET: CIT; 1.86A {Mycobacterium tuberculosis} SCOP: c.32.1.1 d.79.2.1 PDB: 1rlu_A* 1rq7_A* 2q1y_A* 2q1x_A*
Probab=13.17 E-value=64 Score=12.83 Aligned_cols=25 Identities=20% Similarity=0.251 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHCC--CCEEEEE
Q ss_conf 999887999998976312--7577662
Q gi|254780749|r 42 ITTGALGNVVDHCLYGYV--IDYIMIH 66 (108)
Q Consensus 42 i~gGaiGNliDR~~~G~V--vDfi~~~ 66 (108)
-+|||=+|.++|+..-.+ +||+-+.
T Consensus 18 GvGg~G~n~v~~~~~~~~~~v~~iain 44 (382)
T 1rq2_A 18 GIGGGGVNAVNRMIEQGLKGVEFIAIN 44 (382)
T ss_dssp EEHHHHHHHHHHHHHTTCCSEEEEEEE
T ss_pred EECCHHHHHHHHHHHCCCCCEEEEEEC
T ss_conf 868648999999998499970899981
No 6
>3ddl_A Xanthorhodopsin; carotenoid, ION pump, light-harvesting, antenna, retinal, transport protein; HET: SXN UNL RET PX4 PCW; 1.90A {Salinibacter ruber}
Probab=11.97 E-value=70 Score=12.63 Aligned_cols=29 Identities=21% Similarity=0.465 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 89999999999999999999940004321
Q gi|254780749|r 74 VFNLADLFISIGTCIIIYDDIILQHRQKG 102 (108)
Q Consensus 74 vFNvAD~~I~iG~~lli~~~~~~~~~~k~ 102 (108)
.+|+||+.=-+|..++++..-..+.++|.
T Consensus 231 ~Yni~Dvi~Kv~FGl~i~~~A~~~s~~~~ 259 (273)
T 3ddl_A 231 GYTIADVLAKAGYGVLIYNIAKAKSEEEG 259 (273)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 98999999999999999999998415006
No 7
>2r75_1 Cell division protein FTSZ; GTPase, tubulin-like, inhibitor, cell cycle; HET: 01G; 1.40A {Aquifex aeolicus} PDB: 2r6r_1*
Probab=9.94 E-value=83 Score=12.25 Aligned_cols=24 Identities=17% Similarity=0.242 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHCC--CCEEEEE
Q ss_conf 99887999998976312--7577662
Q gi|254780749|r 43 TTGALGNVVDHCLYGYV--IDYIMIH 66 (108)
Q Consensus 43 ~gGaiGNliDR~~~G~V--vDfi~~~ 66 (108)
+|||=+|.+||+....+ ++|+.++
T Consensus 15 vGgaG~n~v~~~~~~g~~~v~~iain 40 (338)
T 2r75_1 15 VGGGGSNAVNRMYEDGIEGVELYAIN 40 (338)
T ss_dssp EHHHHHHHHHHHHHTTCCSCEEEEEE
T ss_pred ECCHHHHHHHHHHHCCCCCEEEEEEE
T ss_conf 78458999999998299971799992
No 8
>2jaf_A Halorhodopsin, HR; chromophore, chloride pump, ION transport, membrane, chloride, receptor, ION pump, transport, sensory transduction; HET: BOG PLM RET; 1.7A {Halobacterium salinarium} PDB: 2jag_A* 1e12_A*
Probab=7.22 E-value=1.1e+02 Score=11.62 Aligned_cols=29 Identities=14% Similarity=0.232 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 89999999999999999999940004321
Q gi|254780749|r 74 VFNLADLFISIGTCIIIYDDIILQHRQKG 102 (108)
Q Consensus 74 vFNvAD~~I~iG~~lli~~~~~~~~~~k~ 102 (108)
.+|++|+.--+|..++++.....+++...
T Consensus 233 ~Y~ilDv~aK~~Fgl~ll~~~~~~~~~~~ 261 (274)
T 2jaf_A 233 AYSVLDVFAKYVFAFILLRWVANNERTVA 261 (274)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHHHTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCHHHH
T ss_conf 99999999868899999999985401132
No 9
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=6.90 E-value=1.1e+02 Score=11.53 Aligned_cols=40 Identities=20% Similarity=0.248 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 998879999989763127577662368154089999999999999999999
Q gi|254780749|r 43 TTGALGNVVDHCLYGYVIDYIMIHTQTWSFAVFNLADLFISIGTCIIIYDD 93 (108)
Q Consensus 43 ~gGaiGNliDR~~~G~VvDfi~~~~~~~~~pvFNvAD~~I~iG~~lli~~~ 93 (108)
+|=+..-+++-+++|.-.|...+ +.=..|.+|++++=+.+
T Consensus 66 lG~v~~~lig~~~f~E~ls~~~i-----------lgi~LIi~GVv~Lnl~s 105 (137)
T 2i68_A 66 VGIVLISLLSWGFFGQRLDLPAI-----------IGMMLICAGVLIINLLS 105 (137)
T ss_dssp HHHHHHHHHHHHHHC------CH-----------HHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHCCCCCHHHH-----------HHHHHHHHHHHHEECCC
T ss_conf 99999999999994799989999-----------99999999998222057
No 10
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=6.55 E-value=1.2e+02 Score=11.44 Aligned_cols=48 Identities=19% Similarity=0.268 Sum_probs=21.2
Q ss_pred HHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 999897631275776623681540899999999999999999999400043211
Q gi|254780749|r 50 VVDHCLYGYVIDYIMIHTQTWSFAVFNLADLFISIGTCIIIYDDIILQHRQKGK 103 (108)
Q Consensus 50 liDR~~~G~VvDfi~~~~~~~~~pvFNvAD~~I~iG~~lli~~~~~~~~~~k~~ 103 (108)
+.=-..-|++.|... ++ .+|-+.=.+..++++++.......+||+++.
T Consensus 397 ~~~~~i~g~l~~~~g-----~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 444 (451)
T 1pw4_A 397 VAASAIVGYTVDFFG-----WD-GGFMVMIGGSILAVILLIVVMIGEKRRHEQL 444 (451)
T ss_dssp HHHHHHHHHHHHSSC-----SH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHHHHHC-----HH-HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH
T ss_conf 999999999999868-----69-9999999999999999999998202616678
Done!