RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddB 21,608 sequences; 5,994,473 total letters Searching..................................................done Query= gi|254780749|ref|YP_003065162.1| lipoprotein signal peptidase transmembrane [Candidatus Liberibacter asiaticus str. psy62] (108 letters) >gnl|CDD|173256 PRK14795, PRK14795, lipoprotein signal peptidase; Provisional. Length = 158 Score = 108 bits (273), Expect = 2e-25 Identities = 45/102 (44%), Positives = 70/102 (68%) Query: 1 MLSNVSPTILVSIRILIIAFIFFIWKKNPKTKSIFDIGYILITTGALGNVVDHCLYGYVI 60 MLS + LV+I + +IAF+ ++W + + +G+ LI GA+GN++D +YGYVI Sbjct: 57 MLSGMHGWGLVAITLAVIAFVLWLWWRTAPDRVFARLGFALIIGGAIGNLIDRFMYGYVI 116 Query: 61 DYIMIHTQTWSFAVFNLADLFISIGTCIIIYDDIILQHRQKG 102 DYI+ HT TWSFAVFNLAD FI+IG +II ++++ +++ Sbjct: 117 DYILFHTPTWSFAVFNLADSFITIGAGLIILEELLGWRKERR 158 >gnl|CDD|178992 PRK00376, lspA, lipoprotein signal peptidase; Reviewed. Length = 160 Score = 77.5 bits (192), Expect = 6e-16 Identities = 29/80 (36%), Positives = 47/80 (58%) Query: 13 IRILIIAFIFFIWKKNPKTKSIFDIGYILITTGALGNVVDHCLYGYVIDYIMIHTQTWSF 72 I I I + ++ ++ + + +I Y LI GALGN++D ++G+V+D+I + W F Sbjct: 74 IAIGISVVLVYLLYRSKALQKLNNIAYALILGGALGNLIDRLVHGFVVDFIDFYWGNWHF 133 Query: 73 AVFNLADLFISIGTCIIIYD 92 FNLAD I IG ++I D Sbjct: 134 PAFNLADSAICIGAVLLILD 153 >gnl|CDD|184820 PRK14785, PRK14785, lipoprotein signal peptidase; Provisional. Length = 171 Score = 64.8 bits (158), Expect = 4e-12 Identities = 28/88 (31%), Positives = 54/88 (61%), Gaps = 1/88 (1%) Query: 15 ILIIAFIFFIWKKNPKTKSIFDIGYILITTGALGNVVDHCLYGYVIDYIMIH-TQTWSFA 73 +++ F+ KK P+ + +G L+ GA+GN++D L+G+VID+I +H W + Sbjct: 83 LIMSLFLIVYLKKAPRQAKLLSLGLALVLGGAIGNLIDRLLHGHVIDFIHVHYADVWHYP 142 Query: 74 VFNLADLFISIGTCIIIYDDIILQHRQK 101 +FN+AD+ I +G +I+ D + L+ ++ Sbjct: 143 IFNIADIGICVGVALIVIDMLFLEKKRN 170 >gnl|CDD|184824 PRK14796, PRK14796, lipoprotein signal peptidase; Provisional. Length = 161 Score = 63.5 bits (155), Expect = 1e-11 Identities = 31/94 (32%), Positives = 48/94 (51%), Gaps = 2/94 (2%) Query: 8 TILVSIRILIIAFIFFIWKKNPKTKSIFDIGYILITTGALGNVVDHCLYGYVIDYIMIHT 67 +LV+++ IW T+ + I LI GA+GN +D YG V D++++H Sbjct: 68 WLLVAVKAAAAVA-LAIWMARSTTR-LAAIALGLIIGGAIGNAIDRLAYGAVFDFVLLHA 125 Query: 68 QTWSFAVFNLADLFISIGTCIIIYDDIILQHRQK 101 T+S+ VFNLAD I G ++YD + K Sbjct: 126 GTYSWYVFNLADAAIVAGVAGLLYDSLFGAPAAK 159 >gnl|CDD|184822 PRK14791, PRK14791, lipoprotein signal peptidase; Provisional. Length = 146 Score = 62.3 bits (152), Expect = 3e-11 Identities = 33/83 (39%), Positives = 56/83 (67%), Gaps = 2/83 (2%) Query: 9 ILVSIRILIIAFIFFIWKKNPKTKSIFDIGYILITTGALGNVVDHCLYGYVIDYIMIHTQ 68 IL++I I+I+ I++I K P +K ++ I LI +GA+GN++D YGYV+D+I H + Sbjct: 60 ILITI-IVILGLIYYIIKYKPTSK-LYKISLSLIISGAIGNLIDRIRYGYVVDFIDFHFK 117 Query: 69 TWSFAVFNLADLFISIGTCIIIY 91 + F VFN+AD+ + +GT ++ Sbjct: 118 DYYFPVFNVADILVVVGTILLAI 140 >gnl|CDD|173234 PRK14773, PRK14773, lipoprotein signal peptidase; Provisional. Length = 192 Score = 59.9 bits (145), Expect = 1e-10 Identities = 23/78 (29%), Positives = 39/78 (50%), Gaps = 3/78 (3%) Query: 18 IAFIFFIWKKNPKTKSIFDIGYILITTGALGNVVDHCLYGYVIDYIMIH---TQTWSFAV 74 +AFI ++K + + + L+ GA+GN VD GYVID+I + + Sbjct: 105 VAFILHYYRKLRQEQRYLQVALALVLGGAVGNFVDRLARGYVIDFIEWYWWNRPDIRWPT 164 Query: 75 FNLADLFISIGTCIIIYD 92 FN+AD I +G +++ Sbjct: 165 FNVADSLIVVGVAMLVLH 182 >gnl|CDD|173231 PRK14770, PRK14770, lipoprotein signal peptidase; Provisional. Length = 167 Score = 58.3 bits (141), Expect = 4e-10 Identities = 26/99 (26%), Positives = 49/99 (49%), Gaps = 2/99 (2%) Query: 2 LSNVSPTILVSIRILIIAFIFFIWKKNPKTKSIFDIGYILITTGALGNVVDHCLYGYVID 61 L + + ++ + + + + P+ +G I GA+GNV+D YG V+D Sbjct: 67 LGGIGRVVFSAVSLAAVLLLGVWLTRTPRPLVAAALG--AIMGGAIGNVIDRMRYGAVVD 124 Query: 62 YIMIHTQTWSFAVFNLADLFISIGTCIIIYDDIILQHRQ 100 ++ H WS+ VFNLAD I G +++ D ++ + + Sbjct: 125 FLHAHAFGWSWYVFNLADAAIDCGVAVLLIDSLLARRQA 163 >gnl|CDD|184823 PRK14793, PRK14793, lipoprotein signal peptidase; Provisional. Length = 150 Score = 54.8 bits (132), Expect = 4e-09 Identities = 26/85 (30%), Positives = 45/85 (52%), Gaps = 4/85 (4%) Query: 8 TILVSIRILIIAFIFFIWKKNPKTKSIFDIGYILITTGALGNVVDHCLYGYVIDYIMIHT 67 + + +++ A + F + K PK K + + LI GALGN+ D G V+D+ + Sbjct: 58 WFFIPVTVIVCAGVLFFYFKIPKQKWLLRLTLGLIGGGALGNLYDRLRIGKVVDF--LDF 115 Query: 68 QTWSFAVFNLADLFISIGTCIIIYD 92 + W VFN+AD I IG ++++ Sbjct: 116 RIW--PVFNIADSAIVIGVGLLMWL 138 >gnl|CDD|161694 TIGR00077, lspA, lipoprotein signal peptidase. Alternate name: lipoprotein signal peptidase. Length = 166 Score = 54.3 bits (131), Expect = 6e-09 Identities = 25/89 (28%), Positives = 44/89 (49%) Query: 13 IRILIIAFIFFIWKKNPKTKSIFDIGYILITTGALGNVVDHCLYGYVIDYIMIHTQTWSF 72 + I I +F + + I +I + LI GALGN +D + G V+D+ + + F Sbjct: 76 LAIAISLGLFVFLLRYKELFKITNIAFGLIFGGALGNFIDRLVRGGVVDFFDFYFGNYHF 135 Query: 73 AVFNLADLFISIGTCIIIYDDIILQHRQK 101 +FN AD I IG +++ + ++K Sbjct: 136 PIFNFADSSICIGVILLLLYFFFPKRKKK 164 >gnl|CDD|184825 PRK14797, PRK14797, lipoprotein signal peptidase; Provisional. Length = 150 Score = 51.5 bits (124), Expect = 5e-08 Identities = 26/76 (34%), Positives = 44/76 (57%), Gaps = 3/76 (3%) Query: 15 ILIIAFIFFIWKKNPKTKSIFDIGYILITTGALGNVVDHCLYGYVIDYIMIHTQTWSFAV 74 + I I+++WK K F +G LI G +GN +D GYV+D M H +FA+ Sbjct: 67 LAIGVAIYYLWKHRYK-NIWFLLGLTLIIAGGIGNFIDRLRLGYVVD--MFHLDFINFAI 123 Query: 75 FNLADLFISIGTCIII 90 FN+AD ++++G +++ Sbjct: 124 FNVADSYLTVGVILLL 139 >gnl|CDD|173237 PRK14776, PRK14776, lipoprotein signal peptidase; Provisional. Length = 170 Score = 50.7 bits (121), Expect = 8e-08 Identities = 21/59 (35%), Positives = 34/59 (57%) Query: 37 IGYILITTGALGNVVDHCLYGYVIDYIMIHTQTWSFAVFNLADLFISIGTCIIIYDDII 95 I Y LI GA+GN++D GYV+D + + W + FNLAD+ I +G + + ++ Sbjct: 98 IAYSLILGGAMGNLIDRVFRGYVVDSFDFYWRDWHWPAFNLADIAIVLGALLFVSSSLL 156 >gnl|CDD|184818 PRK14779, PRK14779, lipoprotein signal peptidase; Provisional. Length = 159 Score = 50.1 bits (120), Expect = 1e-07 Identities = 30/93 (32%), Positives = 48/93 (51%), Gaps = 4/93 (4%) Query: 9 ILVSIRILIIAFIFFIWKKNPKTKSIFDIGYILITTGALGNVVDHCLYGYVIDYIMIHTQ 68 +L I LII F++ + + + ++ LI GALGN+ D G V D+I I+ Sbjct: 69 LLTPIIALIITFLYALKSNDKLS----NLSMGLIGGGALGNLYDRFFLGQVRDFIDIYIG 124 Query: 69 TWSFAVFNLADLFISIGTCIIIYDDIILQHRQK 101 + + FN+AD ISIG + I + + R+K Sbjct: 125 DFHWPAFNIADASISIGIALFILYEHFFKKRKK 157 >gnl|CDD|173251 PRK14790, PRK14790, lipoprotein signal peptidase; Provisional. Length = 169 Score = 48.3 bits (115), Expect = 4e-07 Identities = 25/75 (33%), Positives = 42/75 (56%), Gaps = 4/75 (5%) Query: 15 ILIIAFIFFIWKKNPKTKSIFDIGYILITTGALGNVVDHCLYGYVIDYIMIHTQTWSFAV 74 ++ + I+ + P + + + LI GALGNV+D GYV+D+I + W F + Sbjct: 78 VISLGAIYLYRTQLPNRRLLIQVAMGLILGGALGNVIDRIRLGYVVDFIQVG---W-FPI 133 Query: 75 FNLADLFISIGTCII 89 FNLAD I++G ++ Sbjct: 134 FNLADSAITVGAALL 148 >gnl|CDD|184817 PRK14775, PRK14775, lipoprotein signal peptidase; Provisional. Length = 170 Score = 48.4 bits (115), Expect = 5e-07 Identities = 26/100 (26%), Positives = 52/100 (52%), Gaps = 4/100 (4%) Query: 6 SPTILVSIRILIIAFIFFIWKKNPKTKSIFDIGYILITTGALGNVVDHCLYGYVIDYIMI 65 S I + + +I +F ++ ++ KS +G ++ GALGN+ D +G V D+I + Sbjct: 62 SNLIFTYVSLGVILMLFVLFVQSKCNKSTICMG--VVIGGALGNLADRLRFGAVYDFISL 119 Query: 66 HTQTWSFAVFNLADLFISIGTCIIIYDDIILQHRQKGKID 105 H + + FN AD+ ++ G +I + + + + K +D Sbjct: 120 HAGEFHWPAFNFADVCVTCG--VICFLCLEVMYHAKACVD 157 >gnl|CDD|173230 PRK14769, PRK14769, lipoprotein signal peptidase; Provisional. Length = 156 Score = 48.0 bits (114), Expect = 5e-07 Identities = 27/84 (32%), Positives = 43/84 (51%), Gaps = 5/84 (5%) Query: 7 PTILVSIR-ILIIAFIFFIWKKNPKTKSIFDIGYILITTGALGNVVDHCLYGYVIDYIMI 65 ++V++ ++++A + W++ P + I + GAL NVVD G V DY + Sbjct: 60 VGVIVAVTAVIVVALAVYAWRRAPTAGWVERIAGGAVIGGALANVVDRARDGLVTDY--L 117 Query: 66 HTQTWSFAVFNLADLFISIGTCII 89 HT W FNLAD F+ G +I Sbjct: 118 HTGWWP--TFNLADTFLVTGFAVI 139 >gnl|CDD|173243 PRK14782, PRK14782, lipoprotein signal peptidase; Provisional. Length = 157 Score = 47.8 bits (114), Expect = 5e-07 Identities = 29/84 (34%), Positives = 44/84 (52%), Gaps = 2/84 (2%) Query: 3 SNVSPTILVSIRILIIAFIFFIWKKNPKTKSIFDIGYILITTGALGNVVDHCLYGYVIDY 62 S+ + L+ + + I A + IW + I L+ GAL NV+D +YGYV+D+ Sbjct: 60 SDAARWALIGLALAICAGVV-IWVRRSGGSRWMLISAGLLIGGALANVLDRVIYGYVLDF 118 Query: 63 I-MIHTQTWSFAVFNLADLFISIG 85 + M + VFNLAD+FI G Sbjct: 119 LNMSCCGINNPFVFNLADVFIFAG 142 >gnl|CDD|173255 PRK14794, PRK14794, lipoprotein signal peptidase; Provisional. Length = 136 Score = 45.4 bits (107), Expect = 3e-06 Identities = 23/81 (28%), Positives = 41/81 (50%), Gaps = 2/81 (2%) Query: 10 LVSIRILIIAFIFFIWKKNPKTKSIFDIGYILITTGALGNVVDHCLYGYVIDYIMIHTQT 69 + I +++ F+ + +N Y LI GA+GN++D GYV+D + + Sbjct: 39 FIGIAVVVSIFLIKLILENRHKGEAI--AYSLILGGAMGNLIDRVFRGYVVDSFDFYWRD 96 Query: 70 WSFAVFNLADLFISIGTCIII 90 W + FNLAD+ I +G + + Sbjct: 97 WHWPAFNLADIAIVLGALLFV 117 >gnl|CDD|173239 PRK14778, PRK14778, lipoprotein signal peptidase; Provisional. Length = 186 Score = 44.8 bits (106), Expect = 5e-06 Identities = 27/91 (29%), Positives = 53/91 (58%), Gaps = 7/91 (7%) Query: 1 MLSNVSPTIL-VSIRILIIAFIFFIWKKNPKTKSIFDIGYILITTGALGNVVDHCLYGYV 59 + SN+S +L + +++ + + + + + +G+IL GALGN++D +GYV Sbjct: 47 LFSNLSEQVLWTVLFVVVFLSLLPYIFRFSRLERMA-MGFIL--GGALGNLLDRIRFGYV 103 Query: 60 IDYIMIHTQTWSFAVFNLADLFISIGTCIII 90 +D++ T+ +FNLAD+FI +G ++I Sbjct: 104 LDFL---NLTFLPTIFNLADVFIIVGGALMI 131 >gnl|CDD|173229 PRK14768, PRK14768, lipoprotein signal peptidase; Provisional. Length = 148 Score = 42.2 bits (99), Expect = 3e-05 Identities = 29/80 (36%), Positives = 49/80 (61%), Gaps = 3/80 (3%) Query: 11 VSIRILIIAFIFFIWKKNPKTKSIFD-IGYILITTGALGNVVDHCLYGYVIDYIMIHTQT 69 + I + ++A +F ++ N + IF +G ILI +GALGN++D G+V+DY Sbjct: 59 IFIIVALLATVFGLYYLNTRKVHIFGRLGIILIISGALGNLIDRVRLGFVVDYFDFRV-I 117 Query: 70 WSFAVFNLADLFISIGTCII 89 W + VFN+AD+F+ +GT + Sbjct: 118 WEY-VFNVADVFVVVGTVFL 136 >gnl|CDD|173248 PRK14787, PRK14787, lipoprotein signal peptidase; Provisional. Length = 159 Score = 42.3 bits (100), Expect = 3e-05 Identities = 27/95 (28%), Positives = 47/95 (49%), Gaps = 12/95 (12%) Query: 6 SPTILVSIRILIIA--FIFFIWKKNPKTKSIFDIGYILITTGALGNVVDHCLYGYVIDYI 63 P +L+ + I A + + KN +F + + LI G +GN++D G V+D+I Sbjct: 58 PPEVLLLLTGAISAGVLWYVLRSKNRTP--LFLLAFGLILGGGIGNLIDRITSGRVVDFI 115 Query: 64 -------MIHTQTWS-FAVFNLADLFISIGTCIII 90 I S + +FN+AD I+IG C+++ Sbjct: 116 YFDLYQGYIFGIWVSLWPIFNIADSAITIGACMLL 150 >gnl|CDD|184815 PRK14767, PRK14767, lipoprotein signal peptidase; Provisional. Length = 174 Score = 42.0 bits (99), Expect = 4e-05 Identities = 24/82 (29%), Positives = 48/82 (58%), Gaps = 2/82 (2%) Query: 9 ILVSIRILIIAFIFFIWKKNPKTKSIFDIGYILITTGALGNVVDHCLYGYVIDYIMIHTQ 68 +++++ ++II F K + I + I GA GN++D L GYV+D+ I+ + Sbjct: 71 LVITVAVVIIMAFVFFKLPATKKYNPLHIILVFIVAGAAGNLIDRILNGYVVDF--IYFK 128 Query: 69 TWSFAVFNLADLFISIGTCIII 90 +F +FN+AD+++++ T + I Sbjct: 129 LINFPIFNVADIYVTVSTFLFI 150 >gnl|CDD|173253 PRK14792, PRK14792, lipoprotein signal peptidase; Provisional. Length = 159 Score = 41.5 bits (98), Expect = 5e-05 Identities = 32/97 (32%), Positives = 51/97 (52%), Gaps = 7/97 (7%) Query: 8 TILVSIRILI--IAFIFFIWKKNPKTKSIFD-IGYILITTGALGNVVDHCLYGYVIDYIM 64 TIL+ + L+ I I++IW+K P I+ + + G LGN +D GYVID++ Sbjct: 65 TILLGLLSLLVSIGLIYWIWRKKPL--PIWQLLALAFLLGGTLGNGIDRWRLGYVIDFLN 122 Query: 65 IHTQTWSFAVFNLADLFISIGTCIIIYDDIILQHRQK 101 + +F +FN+AD+ I+I I D I + K Sbjct: 123 L--VPINFPIFNIADIAINIAVICFIIDLIKNRRGSK 157 >gnl|CDD|184814 PRK14764, PRK14764, lipoprotein signal peptidase; Provisional. Length = 209 Score = 40.0 bits (94), Expect = 1e-04 Identities = 22/60 (36%), Positives = 34/60 (56%), Gaps = 10/60 (16%) Query: 37 IGYILITTGALGNVVDHC------LYGYVIDYIMIHTQTWSFAVFNLADLFISIGTCIII 90 +G LI GALGN+VD L G+V+D++ + W + VFN+AD I G +++ Sbjct: 124 LGLGLILGGALGNLVDRFFRAPGPLRGHVVDFLSVG---W-WPVFNVADSAIVCGAILLV 179 >gnl|CDD|173242 PRK14781, PRK14781, lipoprotein signal peptidase; Provisional. Length = 153 Score = 40.2 bits (94), Expect = 1e-04 Identities = 24/76 (31%), Positives = 43/76 (56%), Gaps = 4/76 (5%) Query: 15 ILIIAFIFFIWKKNPKTKSIFDIGYILITTGALGNVVDHCLYGYVIDYIMIHTQTWSFAV 74 ++I A ++++ PK + G L+ GA+GN +D V+DY+ H+ W F Sbjct: 68 LIIAALLWYLTSSAPKMSRLSRAGAALLLGGAVGNFIDRLDGRGVVDYL--HS-GW-FPT 123 Query: 75 FNLADLFISIGTCIII 90 FNLAD+F++ G +++ Sbjct: 124 FNLADVFVTTGVALLV 139 >gnl|CDD|173247 PRK14786, PRK14786, lipoprotein signal peptidase; Provisional. Length = 154 Score = 40.0 bits (93), Expect = 1e-04 Identities = 23/77 (29%), Positives = 42/77 (54%), Gaps = 2/77 (2%) Query: 15 ILIIAFIFFIWKKNPKTKSIFDIGYILITTGALGNVVDHCLYGYVIDYIMIHTQTWSFAV 74 I++ A I+++ K + F + +I GALGN++D YV D++ ++ + Sbjct: 66 IVVGALIYYLIKILKTGEVAFKLSLAIIIGGALGNLIDRVRLNYVTDFLDF--TLINYPI 123 Query: 75 FNLADLFISIGTCIIIY 91 FNLAD+F+ G ++ Y Sbjct: 124 FNLADVFVVSGVVMLSY 140 >gnl|CDD|173235 PRK14774, PRK14774, lipoprotein signal peptidase; Provisional. Length = 185 Score = 39.6 bits (92), Expect = 2e-04 Identities = 28/78 (35%), Positives = 43/78 (55%), Gaps = 4/78 (5%) Query: 10 LVSIRILIIAFIF-FIWKKNPKTKSIFDIGYILITTGALGNVVDHCLYGYVIDYI-MIHT 67 LV + + I A+++ ++W+ P + G L+ GALGNVVD LYG V D++ M Sbjct: 67 LVIVSLAISAWVWRWVWRSTPTRLARISGG--LLIGGALGNVVDRVLYGAVADFLNMSCC 124 Query: 68 QTWSFAVFNLADLFISIG 85 + FN+AD+ I G Sbjct: 125 GIENPYAFNVADIAIFAG 142 >gnl|CDD|173238 PRK14777, PRK14777, lipoprotein signal peptidase; Provisional. Length = 184 Score = 39.1 bits (91), Expect = 2e-04 Identities = 25/93 (26%), Positives = 46/93 (49%), Gaps = 19/93 (20%) Query: 9 ILVSIRILIIAFIFFIWKKNPKTKSIFDIGYILITTGALGNVVDHCLYGYVIDYIMIHTQ 68 +LV + +L+ + + + P+ + LI GA+GN +D +G V D M+H+ Sbjct: 92 LLVGLGLLV----YLLRRPQPR---FLTVVLSLIAAGAIGNAIDGLRFGRVTD--MLHSP 142 Query: 69 TWS----------FAVFNLADLFISIGTCIIIY 91 S F +FNLAD+ + GT ++++ Sbjct: 143 ALSAVTRALGQGDFPIFNLADMCVVGGTLLLLF 175 >gnl|CDD|184819 PRK14784, PRK14784, lipoprotein signal peptidase; Provisional. Length = 160 Score = 34.1 bits (78), Expect = 0.009 Identities = 26/79 (32%), Positives = 42/79 (53%), Gaps = 6/79 (7%) Query: 9 ILVSIRILIIAFI-FFIWKKNPKTKSIFDIGYI-LITTGALGNVVDHCLYGYVIDYIMIH 66 I S+ +I+A FFI KK P + + + +I G +GN++D GYV D+I Sbjct: 64 IAASVLGVILAMTAFFIRKKLPFLDTRPGLIALGVILAGTVGNLIDRVRLGYVTDFI--- 120 Query: 67 TQTWSFAVFNLADLFISIG 85 + F FN+AD +++G Sbjct: 121 -RVGDFPTFNIADSCLTVG 138 >gnl|CDD|173233 PRK14772, PRK14772, lipoprotein signal peptidase; Provisional. Length = 190 Score = 33.3 bits (76), Expect = 0.013 Identities = 21/55 (38%), Positives = 30/55 (54%), Gaps = 10/55 (18%) Query: 41 LITTGALGNVVDHCL------YGYVIDYIMIHTQTWSFAVFNLADLFISIGTCII 89 L+ GALGN+ D G+V+D+I Q +FA+FN+AD + G II Sbjct: 114 LLLGGALGNLTDRLFREPSFGMGHVVDFI----QLPNFAIFNIADSAVVSGVVII 164 >gnl|CDD|173250 PRK14789, PRK14789, lipoprotein signal peptidase; Provisional. Length = 191 Score = 32.7 bits (74), Expect = 0.020 Identities = 22/62 (35%), Positives = 31/62 (50%), Gaps = 4/62 (6%) Query: 41 LITTGALGNVVDHCLYGYVIDYIMIHTQTWSFAVFNLADLFISIGTCIIIYDDIILQHRQ 100 +I G L N+VD GYV+D+I Q + VFNLAD I+IG + + I + Sbjct: 98 MIFGGGLSNLVDRIRQGYVVDFI----QFGWWPVFNLADSAITIGVAALAFHIIFIGEEP 153 Query: 101 KG 102 Sbjct: 154 AP 155 >gnl|CDD|184821 PRK14788, PRK14788, lipoprotein signal peptidase; Provisional. Length = 200 Score = 31.1 bits (71), Expect = 0.061 Identities = 18/55 (32%), Positives = 25/55 (45%), Gaps = 2/55 (3%) Query: 9 ILVSIRILIIAFIFFIWKKNPKTKS--IFDIGYILITTGALGNVVDHCLYGYVID 61 L RI+ + I + K K S I LI GA+GN++D YG + D Sbjct: 62 FLTLFRIVAVGGIGYYLWKLVKKNSSKGLIICISLILAGAIGNIIDSVFYGVIFD 116 >gnl|CDD|184816 PRK14771, PRK14771, lipoprotein signal peptidase; Provisional. Length = 165 Score = 28.2 bits (63), Expect = 0.51 Identities = 16/52 (30%), Positives = 30/52 (57%), Gaps = 11/52 (21%) Query: 45 GALGNVVDHCLY------GYVIDYIMIHTQTWSFAVFNLADLFISIGTCIII 90 GALGN++D +Y G V+D++ + ++V N+AD+F+ I ++ Sbjct: 105 GALGNLIDRVMYAQGFLNGKVVDFL-----NYGWSVGNVADIFLMIAGIALV 151 >gnl|CDD|173227 PRK14766, PRK14766, lipoprotein signal peptidase; Provisional. Length = 201 Score = 27.5 bits (61), Expect = 0.86 Identities = 29/96 (30%), Positives = 45/96 (46%), Gaps = 27/96 (28%) Query: 15 ILIIAFIFFIWKKNPKTKSIFDIGYILITTGALGNVV--------DHCLYGYVIDYIMIH 66 L I FIF KK + I ++ G+ GN++ + +YG V+D++ Sbjct: 94 FLTIVFIFLNNKK-------WLIVLSILLAGSWGNLLARLWAPGNEQNIYGGVVDFL--- 143 Query: 67 TQTWSFA-------VFNLADLFISIGTCIIIYDDII 95 TW F+ VFNLADL+++I + I II Sbjct: 144 --TWDFSLLNSRDYVFNLADLYVNIAIGLTILFTII 177 >gnl|CDD|182488 PRK10476, PRK10476, multidrug resistance protein MdtN; Provisional. Length = 346 Score = 27.3 bits (61), Expect = 0.96 Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 4/45 (8%) Query: 64 MIHTQTWSFAVFNL--ADL-FISIGTCIIIYDDIILQHRQKGKID 105 +I T W +A+ N DL I +G C +Y I +GK+D Sbjct: 239 LIDTDHW-YAIANFRETDLKNIRVGDCATVYSMIDRGRPFEGKVD 282 >gnl|CDD|183113 PRK11387, PRK11387, S-methylmethionine transporter; Provisional. Length = 471 Score = 27.1 bits (60), Expect = 0.96 Identities = 11/30 (36%), Positives = 19/30 (63%) Query: 35 FDIGYILITTGALGNVVDHCLYGYVIDYIM 64 F+ GYI+ TTGA G ++ + + V+ +M Sbjct: 36 FNTGYIISTTGAAGTLLAYLIGALVVYLVM 65 >gnl|CDD|173241 PRK14780, PRK14780, lipoprotein signal peptidase; Provisional. Length = 263 Score = 26.4 bits (58), Expect = 1.7 Identities = 26/104 (25%), Positives = 44/104 (42%), Gaps = 28/104 (26%) Query: 16 LIIAFIFFIWKKNPKTKSIFDIGYILITTGALGNVVDHCL-------------------- 55 +I+ F+ FI+ KN S+ I + + G LGN++D + Sbjct: 121 IILGFLSFIFLKN----SLLYIPLLFLLFGGLGNIIDRSIPEVELYKALPGIFHNSLINP 176 Query: 56 --YGYVIDYIMIHTQTWSF--AVFNLADLFISIGTCIIIYDDII 95 G D I W F ++ NL D++I +G C+++ II Sbjct: 177 NSVGGGDDVINGVVDYWKFVNSIINLFDVYIVVGVCVLVVILII 220 >gnl|CDD|179304 PRK01574, lspA, signal peptidase II; Provisional. Length = 163 Score = 25.0 bits (55), Expect = 3.9 Identities = 22/99 (22%), Positives = 45/99 (45%), Gaps = 11/99 (11%) Query: 9 ILVSIRILIIAFIFFIWKKNPKTKSIFDIGYILITTGALGNVVDHCLYGY-VIDYI---- 63 + + I+I+ F+F + K + I +LI +G +GN++D V+D++ Sbjct: 69 FFLIVPIIILIFVFSFYLK--ERNRIQRWALLLILSGGIGNIIDRLFRPEGVVDFLDVKF 126 Query: 64 --MIHTQTWSFAVFNLADLFISIGTCIIIYDDIILQHRQ 100 + W FN AD ++ IG + + D ++ + Sbjct: 127 FGIFGLDRWP--TFNFADSYVVIGMILFLIYDFFIKRKS 163 >gnl|CDD|178273 PLN02668, PLN02668, indole-3-acetate carboxyl methyltransferase. Length = 386 Score = 24.8 bits (54), Expect = 4.6 Identities = 11/37 (29%), Positives = 17/37 (45%) Query: 65 IHTQTWSFAVFNLADLFISIGTCIIIYDDIILQHRQK 101 +H + F DL S G+ I D+I++H K Sbjct: 55 VHLNSSPEVPFTAVDLGCSSGSNTIHIIDVIVKHMSK 91 >gnl|CDD|179043 PRK00481, PRK00481, NAD-dependent deacetylase; Provisional. Length = 242 Score = 24.8 bits (55), Expect = 4.7 Identities = 8/9 (88%), Positives = 8/9 (88%) Query: 78 ADLFISIGT 86 ADLFI IGT Sbjct: 178 ADLFIVIGT 186 >gnl|CDD|178265 PLN02659, PLN02659, Probable galacturonosyltransferase. Length = 534 Score = 24.6 bits (53), Expect = 5.7 Identities = 13/42 (30%), Positives = 22/42 (52%), Gaps = 10/42 (23%) Query: 56 YGYVIDYIMIHTQTWSFAVFNLADLFISIGTCIIIYDDIILQ 97 Y V+++I IH L +LF S+ + + DDI++Q Sbjct: 326 YNSVMNHIRIH----------LPELFPSLNKVVFLDDDIVVQ 357 >gnl|CDD|132618 TIGR03579, EF_0833, conserved hypothetical protein EF_0833/AHA_3914. Members of this family of relatively rare proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown. Length = 209 Score = 24.8 bits (54), Expect = 5.9 Identities = 12/27 (44%), Positives = 16/27 (59%) Query: 1 MLSNVSPTILVSIRILIIAFIFFIWKK 27 +LS +I + I I A IF+IWKK Sbjct: 162 VLSAAGASIPIGIGSTIGALIFYIWKK 188 >gnl|CDD|180251 PRK05776, PRK05776, DNA topoisomerase I; Provisional. Length = 670 Score = 24.2 bits (53), Expect = 7.1 Identities = 13/53 (24%), Positives = 22/53 (41%), Gaps = 12/53 (22%) Query: 27 KNPKTKSIFDIGYILITTGALGNVV----DHCLYGYVIDYIMIHTQTWSFAVF 75 + P I+ + Y ++ VV H L+G +HT++ F VF Sbjct: 22 EKPIRCRIYGVPYWIVKRDGKKIVVAPAAGH-LFG-------LHTKSKGFPVF 66 >gnl|CDD|181892 PRK09478, mglC, beta-methylgalactoside transporter inner membrane component; Provisional. Length = 336 Score = 24.3 bits (53), Expect = 7.9 Identities = 9/29 (31%), Positives = 17/29 (58%) Query: 10 LVSIRILIIAFIFFIWKKNPKTKSIFDIG 38 + ++ +AF++ +W K K+IF IG Sbjct: 186 ITFYALIAVAFVWVLWNKTRFGKNIFAIG 214 >gnl|CDD|130223 TIGR01153, psbC, photosystem II 44 kDa subunit reaction center protein (also called P6 protein, CP43), bacterial and chloroplast. This model describes the Photosystem II, 44kDa subunit (also called P6 protein, CP43) in bacterial and its equivalents in chloroplast of algae and higher plants. Photosystem II is in many ways functionally equivalent to bacterial reaction center. At the core of Photosystem II are several light harvesting cofactors including plastoquinones, pheophytins, phyloquinones etc. These cofactors are intimately associated with the polypeptides, which principally including subunits 44 kDa protein,DI, DII, Cyt.b, Cyt.f, iron-sulphur protein and others. Functinally 44 kDa subunit is imlicated in chlorophyll binding. Together they participate in the electron transfer reactions that lead to the net production of the reducting equivalents in the form of NADPH, which are used for reduction of CO2 to carbohydrates(C6H1206). Phosystem II operates during oxygenic photosynthesis and principal electron donor is H2O. Although no high resolution X-ray structural data is presently available, recently a 3D structure of the supercomplex has been described by cryo-electron microscopy. Besides a huge body of literature exits that describes function using a variety of biochemical and biophysical techniques. Length = 432 Score = 24.0 bits (52), Expect = 8.6 Identities = 13/42 (30%), Positives = 19/42 (45%) Query: 20 FIFFIWKKNPKTKSIFDIGYILITTGALGNVVDHCLYGYVID 61 F + WK + +I IL+ GAL V C +G + D Sbjct: 114 FFGYDWKDKNQMTNILGYHLILLGIGALLLVAKACFFGGIYD 155 >gnl|CDD|132509 TIGR03469, HonB, hopene-associated glycosyltransferase HpnB. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The genes of this family are often found in the same genetic locus with squalene-hopene cyclase genes, and are never associated with genes for the metabolism of phytoene. Indeed, the members of this family appear to never be found in a genome lacking squalene-hopene cyclase (SHC), although not all genomes encoding SHC have this glycosyl transferase. In the organism Zymomonas mobilis the linkage of this gene to hopanoid biosynthesis has been noted and the gene named HpnB. Hopanoids are known to feature polar glycosyl head groups in many organisms. Length = 384 Score = 23.9 bits (52), Expect = 8.9 Identities = 14/42 (33%), Positives = 21/42 (50%), Gaps = 8/42 (19%) Query: 14 RILIIAFIFFI-------WKKNPKTKSIFDI-GYILITTGAL 47 ++LI AF+FF W +P+ ++ G ILI AL Sbjct: 180 KLLIPAFVFFFQKLYPFRWVNDPRRRTAAAAGGCILIRREAL 221 >gnl|CDD|178826 PRK00052, PRK00052, prolipoprotein diacylglyceryl transferase; Reviewed. Length = 269 Score = 24.0 bits (53), Expect = 9.8 Identities = 13/49 (26%), Positives = 20/49 (40%), Gaps = 4/49 (8%) Query: 17 IIAFIFFIWKKNPKTKSIFDIGYILITTGA----LGNVVDHCLYGYVID 61 I+A + F KK + D + G +GN ++ LYG D Sbjct: 109 ILAMLLFCRKKKLSFLQLLDFIAPAVPIGQAIGRIGNFINGELYGRPTD 157 Database: CddB Posted date: Feb 4, 2011 9:54 PM Number of letters in database: 5,994,473 Number of sequences in database: 21,608 Lambda K H 0.333 0.148 0.465 Gapped Lambda K H 0.267 0.0699 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21608 Number of Hits to DB: 1,808,401 Number of extensions: 105053 Number of successful extensions: 414 Number of sequences better than 10.0: 1 Number of HSP's gapped: 391 Number of HSP's successfully gapped: 98 Length of query: 108 Length of database: 5,994,473 Length adjustment: 74 Effective length of query: 34 Effective length of database: 4,395,481 Effective search space: 149446354 Effective search space used: 149446354 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (22.0 bits) S2: 50 (23.1 bits)