RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddB 
           21,608 sequences; 5,994,473 total letters

Searching..................................................done

Query= gi|254780749|ref|YP_003065162.1| lipoprotein signal peptidase
transmembrane [Candidatus Liberibacter asiaticus str. psy62]
         (108 letters)



>gnl|CDD|173256 PRK14795, PRK14795, lipoprotein signal peptidase; Provisional.
          Length = 158

 Score =  108 bits (273), Expect = 2e-25
 Identities = 45/102 (44%), Positives = 70/102 (68%)

Query: 1   MLSNVSPTILVSIRILIIAFIFFIWKKNPKTKSIFDIGYILITTGALGNVVDHCLYGYVI 60
           MLS +    LV+I + +IAF+ ++W +    +    +G+ LI  GA+GN++D  +YGYVI
Sbjct: 57  MLSGMHGWGLVAITLAVIAFVLWLWWRTAPDRVFARLGFALIIGGAIGNLIDRFMYGYVI 116

Query: 61  DYIMIHTQTWSFAVFNLADLFISIGTCIIIYDDIILQHRQKG 102
           DYI+ HT TWSFAVFNLAD FI+IG  +II ++++   +++ 
Sbjct: 117 DYILFHTPTWSFAVFNLADSFITIGAGLIILEELLGWRKERR 158


>gnl|CDD|178992 PRK00376, lspA, lipoprotein signal peptidase; Reviewed.
          Length = 160

 Score = 77.5 bits (192), Expect = 6e-16
 Identities = 29/80 (36%), Positives = 47/80 (58%)

Query: 13  IRILIIAFIFFIWKKNPKTKSIFDIGYILITTGALGNVVDHCLYGYVIDYIMIHTQTWSF 72
           I I I   + ++  ++   + + +I Y LI  GALGN++D  ++G+V+D+I  +   W F
Sbjct: 74  IAIGISVVLVYLLYRSKALQKLNNIAYALILGGALGNLIDRLVHGFVVDFIDFYWGNWHF 133

Query: 73  AVFNLADLFISIGTCIIIYD 92
             FNLAD  I IG  ++I D
Sbjct: 134 PAFNLADSAICIGAVLLILD 153


>gnl|CDD|184820 PRK14785, PRK14785, lipoprotein signal peptidase; Provisional.
          Length = 171

 Score = 64.8 bits (158), Expect = 4e-12
 Identities = 28/88 (31%), Positives = 54/88 (61%), Gaps = 1/88 (1%)

Query: 15  ILIIAFIFFIWKKNPKTKSIFDIGYILITTGALGNVVDHCLYGYVIDYIMIH-TQTWSFA 73
           +++  F+    KK P+   +  +G  L+  GA+GN++D  L+G+VID+I +H    W + 
Sbjct: 83  LIMSLFLIVYLKKAPRQAKLLSLGLALVLGGAIGNLIDRLLHGHVIDFIHVHYADVWHYP 142

Query: 74  VFNLADLFISIGTCIIIYDDIILQHRQK 101
           +FN+AD+ I +G  +I+ D + L+ ++ 
Sbjct: 143 IFNIADIGICVGVALIVIDMLFLEKKRN 170


>gnl|CDD|184824 PRK14796, PRK14796, lipoprotein signal peptidase; Provisional.
          Length = 161

 Score = 63.5 bits (155), Expect = 1e-11
 Identities = 31/94 (32%), Positives = 48/94 (51%), Gaps = 2/94 (2%)

Query: 8   TILVSIRILIIAFIFFIWKKNPKTKSIFDIGYILITTGALGNVVDHCLYGYVIDYIMIHT 67
            +LV+++         IW     T+ +  I   LI  GA+GN +D   YG V D++++H 
Sbjct: 68  WLLVAVKAAAAVA-LAIWMARSTTR-LAAIALGLIIGGAIGNAIDRLAYGAVFDFVLLHA 125

Query: 68  QTWSFAVFNLADLFISIGTCIIIYDDIILQHRQK 101
            T+S+ VFNLAD  I  G   ++YD +      K
Sbjct: 126 GTYSWYVFNLADAAIVAGVAGLLYDSLFGAPAAK 159


>gnl|CDD|184822 PRK14791, PRK14791, lipoprotein signal peptidase; Provisional.
          Length = 146

 Score = 62.3 bits (152), Expect = 3e-11
 Identities = 33/83 (39%), Positives = 56/83 (67%), Gaps = 2/83 (2%)

Query: 9   ILVSIRILIIAFIFFIWKKNPKTKSIFDIGYILITTGALGNVVDHCLYGYVIDYIMIHTQ 68
           IL++I I+I+  I++I K  P +K ++ I   LI +GA+GN++D   YGYV+D+I  H +
Sbjct: 60  ILITI-IVILGLIYYIIKYKPTSK-LYKISLSLIISGAIGNLIDRIRYGYVVDFIDFHFK 117

Query: 69  TWSFAVFNLADLFISIGTCIIIY 91
            + F VFN+AD+ + +GT ++  
Sbjct: 118 DYYFPVFNVADILVVVGTILLAI 140


>gnl|CDD|173234 PRK14773, PRK14773, lipoprotein signal peptidase; Provisional.
          Length = 192

 Score = 59.9 bits (145), Expect = 1e-10
 Identities = 23/78 (29%), Positives = 39/78 (50%), Gaps = 3/78 (3%)

Query: 18  IAFIFFIWKKNPKTKSIFDIGYILITTGALGNVVDHCLYGYVIDYIMIH---TQTWSFAV 74
           +AFI   ++K  + +    +   L+  GA+GN VD    GYVID+I  +        +  
Sbjct: 105 VAFILHYYRKLRQEQRYLQVALALVLGGAVGNFVDRLARGYVIDFIEWYWWNRPDIRWPT 164

Query: 75  FNLADLFISIGTCIIIYD 92
           FN+AD  I +G  +++  
Sbjct: 165 FNVADSLIVVGVAMLVLH 182


>gnl|CDD|173231 PRK14770, PRK14770, lipoprotein signal peptidase; Provisional.
          Length = 167

 Score = 58.3 bits (141), Expect = 4e-10
 Identities = 26/99 (26%), Positives = 49/99 (49%), Gaps = 2/99 (2%)

Query: 2   LSNVSPTILVSIRILIIAFIFFIWKKNPKTKSIFDIGYILITTGALGNVVDHCLYGYVID 61
           L  +   +  ++ +  +  +     + P+      +G   I  GA+GNV+D   YG V+D
Sbjct: 67  LGGIGRVVFSAVSLAAVLLLGVWLTRTPRPLVAAALG--AIMGGAIGNVIDRMRYGAVVD 124

Query: 62  YIMIHTQTWSFAVFNLADLFISIGTCIIIYDDIILQHRQ 100
           ++  H   WS+ VFNLAD  I  G  +++ D ++ + + 
Sbjct: 125 FLHAHAFGWSWYVFNLADAAIDCGVAVLLIDSLLARRQA 163


>gnl|CDD|184823 PRK14793, PRK14793, lipoprotein signal peptidase; Provisional.
          Length = 150

 Score = 54.8 bits (132), Expect = 4e-09
 Identities = 26/85 (30%), Positives = 45/85 (52%), Gaps = 4/85 (4%)

Query: 8   TILVSIRILIIAFIFFIWKKNPKTKSIFDIGYILITTGALGNVVDHCLYGYVIDYIMIHT 67
              + + +++ A + F + K PK K +  +   LI  GALGN+ D    G V+D+  +  
Sbjct: 58  WFFIPVTVIVCAGVLFFYFKIPKQKWLLRLTLGLIGGGALGNLYDRLRIGKVVDF--LDF 115

Query: 68  QTWSFAVFNLADLFISIGTCIIIYD 92
           + W   VFN+AD  I IG  ++++ 
Sbjct: 116 RIW--PVFNIADSAIVIGVGLLMWL 138


>gnl|CDD|161694 TIGR00077, lspA, lipoprotein signal peptidase.  Alternate name:
           lipoprotein signal peptidase.
          Length = 166

 Score = 54.3 bits (131), Expect = 6e-09
 Identities = 25/89 (28%), Positives = 44/89 (49%)

Query: 13  IRILIIAFIFFIWKKNPKTKSIFDIGYILITTGALGNVVDHCLYGYVIDYIMIHTQTWSF 72
           + I I   +F    +  +   I +I + LI  GALGN +D  + G V+D+   +   + F
Sbjct: 76  LAIAISLGLFVFLLRYKELFKITNIAFGLIFGGALGNFIDRLVRGGVVDFFDFYFGNYHF 135

Query: 73  AVFNLADLFISIGTCIIIYDDIILQHRQK 101
            +FN AD  I IG  +++      + ++K
Sbjct: 136 PIFNFADSSICIGVILLLLYFFFPKRKKK 164


>gnl|CDD|184825 PRK14797, PRK14797, lipoprotein signal peptidase; Provisional.
          Length = 150

 Score = 51.5 bits (124), Expect = 5e-08
 Identities = 26/76 (34%), Positives = 44/76 (57%), Gaps = 3/76 (3%)

Query: 15  ILIIAFIFFIWKKNPKTKSIFDIGYILITTGALGNVVDHCLYGYVIDYIMIHTQTWSFAV 74
           + I   I+++WK   K    F +G  LI  G +GN +D    GYV+D  M H    +FA+
Sbjct: 67  LAIGVAIYYLWKHRYK-NIWFLLGLTLIIAGGIGNFIDRLRLGYVVD--MFHLDFINFAI 123

Query: 75  FNLADLFISIGTCIII 90
           FN+AD ++++G  +++
Sbjct: 124 FNVADSYLTVGVILLL 139


>gnl|CDD|173237 PRK14776, PRK14776, lipoprotein signal peptidase; Provisional.
          Length = 170

 Score = 50.7 bits (121), Expect = 8e-08
 Identities = 21/59 (35%), Positives = 34/59 (57%)

Query: 37  IGYILITTGALGNVVDHCLYGYVIDYIMIHTQTWSFAVFNLADLFISIGTCIIIYDDII 95
           I Y LI  GA+GN++D    GYV+D    + + W +  FNLAD+ I +G  + +   ++
Sbjct: 98  IAYSLILGGAMGNLIDRVFRGYVVDSFDFYWRDWHWPAFNLADIAIVLGALLFVSSSLL 156


>gnl|CDD|184818 PRK14779, PRK14779, lipoprotein signal peptidase; Provisional.
          Length = 159

 Score = 50.1 bits (120), Expect = 1e-07
 Identities = 30/93 (32%), Positives = 48/93 (51%), Gaps = 4/93 (4%)

Query: 9   ILVSIRILIIAFIFFIWKKNPKTKSIFDIGYILITTGALGNVVDHCLYGYVIDYIMIHTQ 68
           +L  I  LII F++ +   +  +    ++   LI  GALGN+ D    G V D+I I+  
Sbjct: 69  LLTPIIALIITFLYALKSNDKLS----NLSMGLIGGGALGNLYDRFFLGQVRDFIDIYIG 124

Query: 69  TWSFAVFNLADLFISIGTCIIIYDDIILQHRQK 101
            + +  FN+AD  ISIG  + I  +   + R+K
Sbjct: 125 DFHWPAFNIADASISIGIALFILYEHFFKKRKK 157


>gnl|CDD|173251 PRK14790, PRK14790, lipoprotein signal peptidase; Provisional.
          Length = 169

 Score = 48.3 bits (115), Expect = 4e-07
 Identities = 25/75 (33%), Positives = 42/75 (56%), Gaps = 4/75 (5%)

Query: 15  ILIIAFIFFIWKKNPKTKSIFDIGYILITTGALGNVVDHCLYGYVIDYIMIHTQTWSFAV 74
           ++ +  I+    + P  + +  +   LI  GALGNV+D    GYV+D+I +    W F +
Sbjct: 78  VISLGAIYLYRTQLPNRRLLIQVAMGLILGGALGNVIDRIRLGYVVDFIQVG---W-FPI 133

Query: 75  FNLADLFISIGTCII 89
           FNLAD  I++G  ++
Sbjct: 134 FNLADSAITVGAALL 148


>gnl|CDD|184817 PRK14775, PRK14775, lipoprotein signal peptidase; Provisional.
          Length = 170

 Score = 48.4 bits (115), Expect = 5e-07
 Identities = 26/100 (26%), Positives = 52/100 (52%), Gaps = 4/100 (4%)

Query: 6   SPTILVSIRILIIAFIFFIWKKNPKTKSIFDIGYILITTGALGNVVDHCLYGYVIDYIMI 65
           S  I   + + +I  +F ++ ++   KS   +G  ++  GALGN+ D   +G V D+I +
Sbjct: 62  SNLIFTYVSLGVILMLFVLFVQSKCNKSTICMG--VVIGGALGNLADRLRFGAVYDFISL 119

Query: 66  HTQTWSFAVFNLADLFISIGTCIIIYDDIILQHRQKGKID 105
           H   + +  FN AD+ ++ G  +I +  + + +  K  +D
Sbjct: 120 HAGEFHWPAFNFADVCVTCG--VICFLCLEVMYHAKACVD 157


>gnl|CDD|173230 PRK14769, PRK14769, lipoprotein signal peptidase; Provisional.
          Length = 156

 Score = 48.0 bits (114), Expect = 5e-07
 Identities = 27/84 (32%), Positives = 43/84 (51%), Gaps = 5/84 (5%)

Query: 7   PTILVSIR-ILIIAFIFFIWKKNPKTKSIFDIGYILITTGALGNVVDHCLYGYVIDYIMI 65
             ++V++  ++++A   + W++ P    +  I    +  GAL NVVD    G V DY  +
Sbjct: 60  VGVIVAVTAVIVVALAVYAWRRAPTAGWVERIAGGAVIGGALANVVDRARDGLVTDY--L 117

Query: 66  HTQTWSFAVFNLADLFISIGTCII 89
           HT  W    FNLAD F+  G  +I
Sbjct: 118 HTGWWP--TFNLADTFLVTGFAVI 139


>gnl|CDD|173243 PRK14782, PRK14782, lipoprotein signal peptidase; Provisional.
          Length = 157

 Score = 47.8 bits (114), Expect = 5e-07
 Identities = 29/84 (34%), Positives = 44/84 (52%), Gaps = 2/84 (2%)

Query: 3   SNVSPTILVSIRILIIAFIFFIWKKNPKTKSIFDIGYILITTGALGNVVDHCLYGYVIDY 62
           S+ +   L+ + + I A +  IW +         I   L+  GAL NV+D  +YGYV+D+
Sbjct: 60  SDAARWALIGLALAICAGVV-IWVRRSGGSRWMLISAGLLIGGALANVLDRVIYGYVLDF 118

Query: 63  I-MIHTQTWSFAVFNLADLFISIG 85
           + M      +  VFNLAD+FI  G
Sbjct: 119 LNMSCCGINNPFVFNLADVFIFAG 142


>gnl|CDD|173255 PRK14794, PRK14794, lipoprotein signal peptidase; Provisional.
          Length = 136

 Score = 45.4 bits (107), Expect = 3e-06
 Identities = 23/81 (28%), Positives = 41/81 (50%), Gaps = 2/81 (2%)

Query: 10  LVSIRILIIAFIFFIWKKNPKTKSIFDIGYILITTGALGNVVDHCLYGYVIDYIMIHTQT 69
            + I +++  F+  +  +N          Y LI  GA+GN++D    GYV+D    + + 
Sbjct: 39  FIGIAVVVSIFLIKLILENRHKGEAI--AYSLILGGAMGNLIDRVFRGYVVDSFDFYWRD 96

Query: 70  WSFAVFNLADLFISIGTCIII 90
           W +  FNLAD+ I +G  + +
Sbjct: 97  WHWPAFNLADIAIVLGALLFV 117


>gnl|CDD|173239 PRK14778, PRK14778, lipoprotein signal peptidase; Provisional.
          Length = 186

 Score = 44.8 bits (106), Expect = 5e-06
 Identities = 27/91 (29%), Positives = 53/91 (58%), Gaps = 7/91 (7%)

Query: 1   MLSNVSPTIL-VSIRILIIAFIFFIWKKNPKTKSIFDIGYILITTGALGNVVDHCLYGYV 59
           + SN+S  +L   + +++   +     +  + + +  +G+IL   GALGN++D   +GYV
Sbjct: 47  LFSNLSEQVLWTVLFVVVFLSLLPYIFRFSRLERMA-MGFIL--GGALGNLLDRIRFGYV 103

Query: 60  IDYIMIHTQTWSFAVFNLADLFISIGTCIII 90
           +D++     T+   +FNLAD+FI +G  ++I
Sbjct: 104 LDFL---NLTFLPTIFNLADVFIIVGGALMI 131


>gnl|CDD|173229 PRK14768, PRK14768, lipoprotein signal peptidase; Provisional.
          Length = 148

 Score = 42.2 bits (99), Expect = 3e-05
 Identities = 29/80 (36%), Positives = 49/80 (61%), Gaps = 3/80 (3%)

Query: 11  VSIRILIIAFIFFIWKKNPKTKSIFD-IGYILITTGALGNVVDHCLYGYVIDYIMIHTQT 69
           + I + ++A +F ++  N +   IF  +G ILI +GALGN++D    G+V+DY       
Sbjct: 59  IFIIVALLATVFGLYYLNTRKVHIFGRLGIILIISGALGNLIDRVRLGFVVDYFDFRV-I 117

Query: 70  WSFAVFNLADLFISIGTCII 89
           W + VFN+AD+F+ +GT  +
Sbjct: 118 WEY-VFNVADVFVVVGTVFL 136


>gnl|CDD|173248 PRK14787, PRK14787, lipoprotein signal peptidase; Provisional.
          Length = 159

 Score = 42.3 bits (100), Expect = 3e-05
 Identities = 27/95 (28%), Positives = 47/95 (49%), Gaps = 12/95 (12%)

Query: 6   SPTILVSIRILIIA--FIFFIWKKNPKTKSIFDIGYILITTGALGNVVDHCLYGYVIDYI 63
            P +L+ +   I A    + +  KN     +F + + LI  G +GN++D    G V+D+I
Sbjct: 58  PPEVLLLLTGAISAGVLWYVLRSKNRTP--LFLLAFGLILGGGIGNLIDRITSGRVVDFI 115

Query: 64  -------MIHTQTWS-FAVFNLADLFISIGTCIII 90
                   I     S + +FN+AD  I+IG C+++
Sbjct: 116 YFDLYQGYIFGIWVSLWPIFNIADSAITIGACMLL 150


>gnl|CDD|184815 PRK14767, PRK14767, lipoprotein signal peptidase; Provisional.
          Length = 174

 Score = 42.0 bits (99), Expect = 4e-05
 Identities = 24/82 (29%), Positives = 48/82 (58%), Gaps = 2/82 (2%)

Query: 9   ILVSIRILIIAFIFFIWKKNPKTKSIFDIGYILITTGALGNVVDHCLYGYVIDYIMIHTQ 68
           +++++ ++II    F      K  +   I  + I  GA GN++D  L GYV+D+  I+ +
Sbjct: 71  LVITVAVVIIMAFVFFKLPATKKYNPLHIILVFIVAGAAGNLIDRILNGYVVDF--IYFK 128

Query: 69  TWSFAVFNLADLFISIGTCIII 90
             +F +FN+AD+++++ T + I
Sbjct: 129 LINFPIFNVADIYVTVSTFLFI 150


>gnl|CDD|173253 PRK14792, PRK14792, lipoprotein signal peptidase; Provisional.
          Length = 159

 Score = 41.5 bits (98), Expect = 5e-05
 Identities = 32/97 (32%), Positives = 51/97 (52%), Gaps = 7/97 (7%)

Query: 8   TILVSIRILI--IAFIFFIWKKNPKTKSIFD-IGYILITTGALGNVVDHCLYGYVIDYIM 64
           TIL+ +  L+  I  I++IW+K P    I+  +    +  G LGN +D    GYVID++ 
Sbjct: 65  TILLGLLSLLVSIGLIYWIWRKKPL--PIWQLLALAFLLGGTLGNGIDRWRLGYVIDFLN 122

Query: 65  IHTQTWSFAVFNLADLFISIGTCIIIYDDIILQHRQK 101
           +     +F +FN+AD+ I+I     I D I  +   K
Sbjct: 123 L--VPINFPIFNIADIAINIAVICFIIDLIKNRRGSK 157


>gnl|CDD|184814 PRK14764, PRK14764, lipoprotein signal peptidase; Provisional.
          Length = 209

 Score = 40.0 bits (94), Expect = 1e-04
 Identities = 22/60 (36%), Positives = 34/60 (56%), Gaps = 10/60 (16%)

Query: 37  IGYILITTGALGNVVDHC------LYGYVIDYIMIHTQTWSFAVFNLADLFISIGTCIII 90
           +G  LI  GALGN+VD        L G+V+D++ +    W + VFN+AD  I  G  +++
Sbjct: 124 LGLGLILGGALGNLVDRFFRAPGPLRGHVVDFLSVG---W-WPVFNVADSAIVCGAILLV 179


>gnl|CDD|173242 PRK14781, PRK14781, lipoprotein signal peptidase; Provisional.
          Length = 153

 Score = 40.2 bits (94), Expect = 1e-04
 Identities = 24/76 (31%), Positives = 43/76 (56%), Gaps = 4/76 (5%)

Query: 15  ILIIAFIFFIWKKNPKTKSIFDIGYILITTGALGNVVDHCLYGYVIDYIMIHTQTWSFAV 74
           ++I A ++++    PK   +   G  L+  GA+GN +D      V+DY+  H+  W F  
Sbjct: 68  LIIAALLWYLTSSAPKMSRLSRAGAALLLGGAVGNFIDRLDGRGVVDYL--HS-GW-FPT 123

Query: 75  FNLADLFISIGTCIII 90
           FNLAD+F++ G  +++
Sbjct: 124 FNLADVFVTTGVALLV 139


>gnl|CDD|173247 PRK14786, PRK14786, lipoprotein signal peptidase; Provisional.
          Length = 154

 Score = 40.0 bits (93), Expect = 1e-04
 Identities = 23/77 (29%), Positives = 42/77 (54%), Gaps = 2/77 (2%)

Query: 15  ILIIAFIFFIWKKNPKTKSIFDIGYILITTGALGNVVDHCLYGYVIDYIMIHTQTWSFAV 74
           I++ A I+++ K     +  F +   +I  GALGN++D     YV D++       ++ +
Sbjct: 66  IVVGALIYYLIKILKTGEVAFKLSLAIIIGGALGNLIDRVRLNYVTDFLDF--TLINYPI 123

Query: 75  FNLADLFISIGTCIIIY 91
           FNLAD+F+  G  ++ Y
Sbjct: 124 FNLADVFVVSGVVMLSY 140


>gnl|CDD|173235 PRK14774, PRK14774, lipoprotein signal peptidase; Provisional.
          Length = 185

 Score = 39.6 bits (92), Expect = 2e-04
 Identities = 28/78 (35%), Positives = 43/78 (55%), Gaps = 4/78 (5%)

Query: 10  LVSIRILIIAFIF-FIWKKNPKTKSIFDIGYILITTGALGNVVDHCLYGYVIDYI-MIHT 67
           LV + + I A+++ ++W+  P   +    G  L+  GALGNVVD  LYG V D++ M   
Sbjct: 67  LVIVSLAISAWVWRWVWRSTPTRLARISGG--LLIGGALGNVVDRVLYGAVADFLNMSCC 124

Query: 68  QTWSFAVFNLADLFISIG 85
              +   FN+AD+ I  G
Sbjct: 125 GIENPYAFNVADIAIFAG 142


>gnl|CDD|173238 PRK14777, PRK14777, lipoprotein signal peptidase; Provisional.
          Length = 184

 Score = 39.1 bits (91), Expect = 2e-04
 Identities = 25/93 (26%), Positives = 46/93 (49%), Gaps = 19/93 (20%)

Query: 9   ILVSIRILIIAFIFFIWKKNPKTKSIFDIGYILITTGALGNVVDHCLYGYVIDYIMIHTQ 68
           +LV + +L+    + + +  P+      +   LI  GA+GN +D   +G V D  M+H+ 
Sbjct: 92  LLVGLGLLV----YLLRRPQPR---FLTVVLSLIAAGAIGNAIDGLRFGRVTD--MLHSP 142

Query: 69  TWS----------FAVFNLADLFISIGTCIIIY 91
             S          F +FNLAD+ +  GT ++++
Sbjct: 143 ALSAVTRALGQGDFPIFNLADMCVVGGTLLLLF 175


>gnl|CDD|184819 PRK14784, PRK14784, lipoprotein signal peptidase; Provisional.
          Length = 160

 Score = 34.1 bits (78), Expect = 0.009
 Identities = 26/79 (32%), Positives = 42/79 (53%), Gaps = 6/79 (7%)

Query: 9   ILVSIRILIIAFI-FFIWKKNPKTKSIFDIGYI-LITTGALGNVVDHCLYGYVIDYIMIH 66
           I  S+  +I+A   FFI KK P   +   +  + +I  G +GN++D    GYV D+I   
Sbjct: 64  IAASVLGVILAMTAFFIRKKLPFLDTRPGLIALGVILAGTVGNLIDRVRLGYVTDFI--- 120

Query: 67  TQTWSFAVFNLADLFISIG 85
            +   F  FN+AD  +++G
Sbjct: 121 -RVGDFPTFNIADSCLTVG 138


>gnl|CDD|173233 PRK14772, PRK14772, lipoprotein signal peptidase; Provisional.
          Length = 190

 Score = 33.3 bits (76), Expect = 0.013
 Identities = 21/55 (38%), Positives = 30/55 (54%), Gaps = 10/55 (18%)

Query: 41  LITTGALGNVVDHCL------YGYVIDYIMIHTQTWSFAVFNLADLFISIGTCII 89
           L+  GALGN+ D          G+V+D+I    Q  +FA+FN+AD  +  G  II
Sbjct: 114 LLLGGALGNLTDRLFREPSFGMGHVVDFI----QLPNFAIFNIADSAVVSGVVII 164


>gnl|CDD|173250 PRK14789, PRK14789, lipoprotein signal peptidase; Provisional.
          Length = 191

 Score = 32.7 bits (74), Expect = 0.020
 Identities = 22/62 (35%), Positives = 31/62 (50%), Gaps = 4/62 (6%)

Query: 41  LITTGALGNVVDHCLYGYVIDYIMIHTQTWSFAVFNLADLFISIGTCIIIYDDIILQHRQ 100
           +I  G L N+VD    GYV+D+I    Q   + VFNLAD  I+IG   + +  I +    
Sbjct: 98  MIFGGGLSNLVDRIRQGYVVDFI----QFGWWPVFNLADSAITIGVAALAFHIIFIGEEP 153

Query: 101 KG 102
             
Sbjct: 154 AP 155


>gnl|CDD|184821 PRK14788, PRK14788, lipoprotein signal peptidase; Provisional.
          Length = 200

 Score = 31.1 bits (71), Expect = 0.061
 Identities = 18/55 (32%), Positives = 25/55 (45%), Gaps = 2/55 (3%)

Query: 9   ILVSIRILIIAFIFFIWKKNPKTKS--IFDIGYILITTGALGNVVDHCLYGYVID 61
            L   RI+ +  I +   K  K  S     I   LI  GA+GN++D   YG + D
Sbjct: 62  FLTLFRIVAVGGIGYYLWKLVKKNSSKGLIICISLILAGAIGNIIDSVFYGVIFD 116


>gnl|CDD|184816 PRK14771, PRK14771, lipoprotein signal peptidase; Provisional.
          Length = 165

 Score = 28.2 bits (63), Expect = 0.51
 Identities = 16/52 (30%), Positives = 30/52 (57%), Gaps = 11/52 (21%)

Query: 45  GALGNVVDHCLY------GYVIDYIMIHTQTWSFAVFNLADLFISIGTCIII 90
           GALGN++D  +Y      G V+D++      + ++V N+AD+F+ I    ++
Sbjct: 105 GALGNLIDRVMYAQGFLNGKVVDFL-----NYGWSVGNVADIFLMIAGIALV 151


>gnl|CDD|173227 PRK14766, PRK14766, lipoprotein signal peptidase; Provisional.
          Length = 201

 Score = 27.5 bits (61), Expect = 0.86
 Identities = 29/96 (30%), Positives = 45/96 (46%), Gaps = 27/96 (28%)

Query: 15  ILIIAFIFFIWKKNPKTKSIFDIGYILITTGALGNVV--------DHCLYGYVIDYIMIH 66
            L I FIF   KK       + I   ++  G+ GN++        +  +YG V+D++   
Sbjct: 94  FLTIVFIFLNNKK-------WLIVLSILLAGSWGNLLARLWAPGNEQNIYGGVVDFL--- 143

Query: 67  TQTWSFA-------VFNLADLFISIGTCIIIYDDII 95
             TW F+       VFNLADL+++I   + I   II
Sbjct: 144 --TWDFSLLNSRDYVFNLADLYVNIAIGLTILFTII 177


>gnl|CDD|182488 PRK10476, PRK10476, multidrug resistance protein MdtN; Provisional.
          Length = 346

 Score = 27.3 bits (61), Expect = 0.96
 Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 4/45 (8%)

Query: 64  MIHTQTWSFAVFNL--ADL-FISIGTCIIIYDDIILQHRQKGKID 105
           +I T  W +A+ N    DL  I +G C  +Y  I      +GK+D
Sbjct: 239 LIDTDHW-YAIANFRETDLKNIRVGDCATVYSMIDRGRPFEGKVD 282


>gnl|CDD|183113 PRK11387, PRK11387, S-methylmethionine transporter; Provisional.
          Length = 471

 Score = 27.1 bits (60), Expect = 0.96
 Identities = 11/30 (36%), Positives = 19/30 (63%)

Query: 35 FDIGYILITTGALGNVVDHCLYGYVIDYIM 64
          F+ GYI+ TTGA G ++ + +   V+  +M
Sbjct: 36 FNTGYIISTTGAAGTLLAYLIGALVVYLVM 65


>gnl|CDD|173241 PRK14780, PRK14780, lipoprotein signal peptidase; Provisional.
          Length = 263

 Score = 26.4 bits (58), Expect = 1.7
 Identities = 26/104 (25%), Positives = 44/104 (42%), Gaps = 28/104 (26%)

Query: 16  LIIAFIFFIWKKNPKTKSIFDIGYILITTGALGNVVDHCL-------------------- 55
           +I+ F+ FI+ KN    S+  I  + +  G LGN++D  +                    
Sbjct: 121 IILGFLSFIFLKN----SLLYIPLLFLLFGGLGNIIDRSIPEVELYKALPGIFHNSLINP 176

Query: 56  --YGYVIDYIMIHTQTWSF--AVFNLADLFISIGTCIIIYDDII 95
              G   D I      W F  ++ NL D++I +G C+++   II
Sbjct: 177 NSVGGGDDVINGVVDYWKFVNSIINLFDVYIVVGVCVLVVILII 220


>gnl|CDD|179304 PRK01574, lspA, signal peptidase II; Provisional.
          Length = 163

 Score = 25.0 bits (55), Expect = 3.9
 Identities = 22/99 (22%), Positives = 45/99 (45%), Gaps = 11/99 (11%)

Query: 9   ILVSIRILIIAFIFFIWKKNPKTKSIFDIGYILITTGALGNVVDHCLYGY-VIDYI---- 63
             + + I+I+ F+F  + K  +   I     +LI +G +GN++D       V+D++    
Sbjct: 69  FFLIVPIIILIFVFSFYLK--ERNRIQRWALLLILSGGIGNIIDRLFRPEGVVDFLDVKF 126

Query: 64  --MIHTQTWSFAVFNLADLFISIGTCIIIYDDIILQHRQ 100
             +     W    FN AD ++ IG  + +  D  ++ + 
Sbjct: 127 FGIFGLDRWP--TFNFADSYVVIGMILFLIYDFFIKRKS 163


>gnl|CDD|178273 PLN02668, PLN02668, indole-3-acetate carboxyl methyltransferase.
          Length = 386

 Score = 24.8 bits (54), Expect = 4.6
 Identities = 11/37 (29%), Positives = 17/37 (45%)

Query: 65  IHTQTWSFAVFNLADLFISIGTCIIIYDDIILQHRQK 101
           +H  +     F   DL  S G+  I   D+I++H  K
Sbjct: 55  VHLNSSPEVPFTAVDLGCSSGSNTIHIIDVIVKHMSK 91


>gnl|CDD|179043 PRK00481, PRK00481, NAD-dependent deacetylase; Provisional.
          Length = 242

 Score = 24.8 bits (55), Expect = 4.7
 Identities = 8/9 (88%), Positives = 8/9 (88%)

Query: 78  ADLFISIGT 86
           ADLFI IGT
Sbjct: 178 ADLFIVIGT 186


>gnl|CDD|178265 PLN02659, PLN02659, Probable galacturonosyltransferase.
          Length = 534

 Score = 24.6 bits (53), Expect = 5.7
 Identities = 13/42 (30%), Positives = 22/42 (52%), Gaps = 10/42 (23%)

Query: 56  YGYVIDYIMIHTQTWSFAVFNLADLFISIGTCIIIYDDIILQ 97
           Y  V+++I IH          L +LF S+   + + DDI++Q
Sbjct: 326 YNSVMNHIRIH----------LPELFPSLNKVVFLDDDIVVQ 357


>gnl|CDD|132618 TIGR03579, EF_0833, conserved hypothetical protein
           EF_0833/AHA_3914.  Members of this family of relatively
           rare proteins are found in both Gram-positive (e.g.
           Enterococcus faecalis) and Gram-negative (e.g. Aeromonas
           hydrophila) bacteria, as part of a cluster of conserved
           proteins. The function is unknown.
          Length = 209

 Score = 24.8 bits (54), Expect = 5.9
 Identities = 12/27 (44%), Positives = 16/27 (59%)

Query: 1   MLSNVSPTILVSIRILIIAFIFFIWKK 27
           +LS    +I + I   I A IF+IWKK
Sbjct: 162 VLSAAGASIPIGIGSTIGALIFYIWKK 188


>gnl|CDD|180251 PRK05776, PRK05776, DNA topoisomerase I; Provisional.
          Length = 670

 Score = 24.2 bits (53), Expect = 7.1
 Identities = 13/53 (24%), Positives = 22/53 (41%), Gaps = 12/53 (22%)

Query: 27 KNPKTKSIFDIGYILITTGALGNVV----DHCLYGYVIDYIMIHTQTWSFAVF 75
          + P    I+ + Y ++       VV     H L+G       +HT++  F VF
Sbjct: 22 EKPIRCRIYGVPYWIVKRDGKKIVVAPAAGH-LFG-------LHTKSKGFPVF 66


>gnl|CDD|181892 PRK09478, mglC, beta-methylgalactoside transporter inner membrane
           component; Provisional.
          Length = 336

 Score = 24.3 bits (53), Expect = 7.9
 Identities = 9/29 (31%), Positives = 17/29 (58%)

Query: 10  LVSIRILIIAFIFFIWKKNPKTKSIFDIG 38
           +    ++ +AF++ +W K    K+IF IG
Sbjct: 186 ITFYALIAVAFVWVLWNKTRFGKNIFAIG 214


>gnl|CDD|130223 TIGR01153, psbC, photosystem II 44 kDa subunit reaction center
           protein (also called P6 protein, CP43), bacterial and
           chloroplast.  This model describes the Photosystem II,
           44kDa subunit (also called P6 protein, CP43) in
           bacterial and its equivalents in chloroplast of algae
           and higher plants. Photosystem II is in many ways
           functionally equivalent to bacterial reaction center. At
           the core of Photosystem II are several light harvesting
           cofactors including plastoquinones, pheophytins,
           phyloquinones etc. These cofactors are intimately
           associated with the polypeptides, which principally
           including subunits 44 kDa protein,DI, DII, Cyt.b, Cyt.f,
           iron-sulphur protein and others. Functinally 44 kDa
           subunit is imlicated in chlorophyll binding. Together
           they participate in the electron transfer reactions that
           lead to the net production of the reducting equivalents
           in the form of NADPH, which are used for reduction of
           CO2 to carbohydrates(C6H1206). Phosystem II operates
           during oxygenic photosynthesis and principal electron
           donor is H2O. Although no high resolution X-ray
           structural data is presently available, recently a 3D
           structure of the supercomplex has been described by
           cryo-electron microscopy. Besides a huge body of
           literature exits that describes function using a variety
           of biochemical and biophysical techniques.
          Length = 432

 Score = 24.0 bits (52), Expect = 8.6
 Identities = 13/42 (30%), Positives = 19/42 (45%)

Query: 20  FIFFIWKKNPKTKSIFDIGYILITTGALGNVVDHCLYGYVID 61
           F  + WK   +  +I     IL+  GAL  V   C +G + D
Sbjct: 114 FFGYDWKDKNQMTNILGYHLILLGIGALLLVAKACFFGGIYD 155


>gnl|CDD|132509 TIGR03469, HonB, hopene-associated glycosyltransferase HpnB.  This
           family of genes include a glycosyl transferase, group 2
           domain (pfam00535) which are responsible, generally for
           the transfer of nucleotide-diphosphate sugars to
           substrates such as polysaccharides and lipids. The genes
           of this family are often found in the same genetic locus
           with squalene-hopene cyclase genes, and are never
           associated with genes for the metabolism of phytoene.
           Indeed, the members of this family appear to never be
           found in a genome lacking squalene-hopene cyclase (SHC),
           although not all genomes encoding SHC have this glycosyl
           transferase. In the organism Zymomonas mobilis the
           linkage of this gene to hopanoid biosynthesis has been
           noted and the gene named HpnB. Hopanoids are known to
           feature polar glycosyl head groups in many organisms.
          Length = 384

 Score = 23.9 bits (52), Expect = 8.9
 Identities = 14/42 (33%), Positives = 21/42 (50%), Gaps = 8/42 (19%)

Query: 14  RILIIAFIFFI-------WKKNPKTKSIFDI-GYILITTGAL 47
           ++LI AF+FF        W  +P+ ++     G ILI   AL
Sbjct: 180 KLLIPAFVFFFQKLYPFRWVNDPRRRTAAAAGGCILIRREAL 221


>gnl|CDD|178826 PRK00052, PRK00052, prolipoprotein diacylglyceryl transferase;
           Reviewed.
          Length = 269

 Score = 24.0 bits (53), Expect = 9.8
 Identities = 13/49 (26%), Positives = 20/49 (40%), Gaps = 4/49 (8%)

Query: 17  IIAFIFFIWKKNPKTKSIFDIGYILITTGA----LGNVVDHCLYGYVID 61
           I+A + F  KK      + D     +  G     +GN ++  LYG   D
Sbjct: 109 ILAMLLFCRKKKLSFLQLLDFIAPAVPIGQAIGRIGNFINGELYGRPTD 157


  Database: CddB
    Posted date:  Feb 4, 2011  9:54 PM
  Number of letters in database: 5,994,473
  Number of sequences in database:  21,608
  
Lambda     K      H
   0.333    0.148    0.465 

Gapped
Lambda     K      H
   0.267   0.0699    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 1,808,401
Number of extensions: 105053
Number of successful extensions: 414
Number of sequences better than 10.0: 1
Number of HSP's gapped: 391
Number of HSP's successfully gapped: 98
Length of query: 108
Length of database: 5,994,473
Length adjustment: 74
Effective length of query: 34
Effective length of database: 4,395,481
Effective search space: 149446354
Effective search space used: 149446354
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (22.0 bits)
S2: 50 (23.1 bits)