RPS-BLAST 2.2.22 [Sep-27-2009]

Database: pdb70 
           24,244 sequences; 5,693,230 total letters

Searching..................................................done

Query= gi|254780749|ref|YP_003065162.1| lipoprotein signal peptidase
transmembrane [Candidatus Liberibacter asiaticus str. psy62]
         (108 letters)



>2pqv_A MUTT/nudix family protein; structural genomics, PSI-2, protein
           structure initiative, midwest center for structural
           genomics, MCSG; 1.63A {Streptococcus pneumoniae TIGR4}
          Length = 154

 Score = 26.3 bits (57), Expect = 1.5
 Identities = 7/29 (24%), Positives = 13/29 (44%)

Query: 79  DLFISIGTCIIIYDDIILQHRQKGKIDFP 107
            +F    T +I+ +  +L  + KGK    
Sbjct: 16  TVFGVRATALIVQNHKLLVTKDKGKYYTI 44


>2pbt_A AP4A hydrolase; nudix protein, diadenosine polyphosphate,
           structural genomics, NPPSFA; HET: PGE; 1.80A {Aquifex
           aeolicus} PDB: 2pq1_A* 3i7u_A* 3i7v_A*
          Length = 134

 Score = 25.0 bits (54), Expect = 4.8
 Identities = 4/22 (18%), Positives = 8/22 (36%), Gaps = 1/22 (4%)

Query: 87  CIIIYDD-IILQHRQKGKIDFP 107
            ++  D  ++L         FP
Sbjct: 9   GVLFKDGEVLLIKTPSNVWSFP 30


  Database: pdb70
    Posted date:  Jan 26, 2011 11:21 AM
  Number of letters in database: 5,693,230
  Number of sequences in database:  24,244
  
Lambda     K      H
   0.333    0.148    0.465 

Gapped
Lambda     K      H
   0.267   0.0559    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 1,001,953
Number of extensions: 42161
Number of successful extensions: 134
Number of sequences better than 10.0: 1
Number of HSP's gapped: 134
Number of HSP's successfully gapped: 19
Length of query: 108
Length of database: 5,693,230
Length adjustment: 72
Effective length of query: 36
Effective length of database: 3,947,662
Effective search space: 142115832
Effective search space used: 142115832
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (22.0 bits)
S2: 50 (23.4 bits)