RPS-BLAST 2.2.22 [Sep-27-2009] Database: scop70_1_75 13,730 sequences; 2,407,596 total letters Searching..................................................done Query= gi|254780749|ref|YP_003065162.1| lipoprotein signal peptidase transmembrane [Candidatus Liberibacter asiaticus str. psy62] (108 letters) >d1u20a1 d.113.1.1 (A:14-209) U8 snorna-binding protein x29 {African clawed frog (Xenopus laevis) [TaxId: 8355]} Length = 196 Score = 25.4 bits (55), Expect = 1.4 Identities = 5/22 (22%), Positives = 11/22 (50%) Query: 86 TCIIIYDDIILQHRQKGKIDFP 107 + I +++ R G++ FP Sbjct: 37 DRVPIRRVLLMMMRFDGRLGFP 58 >d1oywa3 c.37.1.19 (A:207-406) RecQ helicase domain {Escherichia coli [TaxId: 562]} Length = 200 Score = 23.8 bits (50), Expect = 4.0 Identities = 10/69 (14%), Positives = 25/69 (36%) Query: 40 ILITTGALGNVVDHCLYGYVIDYIMIHTQTWSFAVFNLADLFISIGTCIIIYDDIILQHR 99 I++ T A G ++ +V+ + + + A ++ YD + Sbjct: 83 IVVATVAFGMGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWL 142 Query: 100 QKGKIDFPQ 108 ++ + PQ Sbjct: 143 RRCLEEKPQ 151 >d2aeea1 c.61.1.1 (A:1-208) Orotate PRTase {Streptococcus pyogenes [TaxId: 1314]} Length = 208 Score = 23.2 bits (49), Expect = 5.9 Identities = 10/47 (21%), Positives = 19/47 (40%), Gaps = 1/47 (2%) Query: 59 VIDYIMIHTQTWSFAVFNLADLFISIGTCIIIYDDIILQHRQKGKID 105 V+ + I T A N + I + + Y ++I + +G I Sbjct: 145 VLGVVAIFTYELPKASQNFKEAGIKL-ITLSNYTELIAVAKLQGYIT 190 >d1j8fa_ c.31.1.5 (A:) Sirt2 histone deacetylase {Human (Homo sapiens) [TaxId: 9606]} Length = 323 Score = 22.8 bits (48), Expect = 7.6 Identities = 4/14 (28%), Positives = 8/14 (57%) Query: 78 ADLFISIGTCIIIY 91 DL + +GT + + Sbjct: 221 VDLLLVMGTSLQVQ 234 Database: scop70_1_75 Posted date: Mar 27, 2010 6:21 PM Number of letters in database: 2,407,596 Number of sequences in database: 13,730 Lambda K H 0.333 0.148 0.465 Gapped Lambda K H 0.267 0.0463 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 13730 Number of Hits to DB: 439,753 Number of extensions: 18703 Number of successful extensions: 55 Number of sequences better than 10.0: 1 Number of HSP's gapped: 55 Number of HSP's successfully gapped: 16 Length of query: 108 Length of database: 2,407,596 Length adjustment: 68 Effective length of query: 40 Effective length of database: 1,473,956 Effective search space: 58958240 Effective search space used: 58958240 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (22.0 bits) S2: 47 (22.5 bits)