RPS-BLAST 2.2.22 [Sep-27-2009]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= gi|254780749|ref|YP_003065162.1| lipoprotein signal peptidase
transmembrane [Candidatus Liberibacter asiaticus str. psy62]
         (108 letters)



>d1u20a1 d.113.1.1 (A:14-209) U8 snorna-binding protein x29 {African
           clawed frog (Xenopus laevis) [TaxId: 8355]}
          Length = 196

 Score = 25.4 bits (55), Expect = 1.4
 Identities = 5/22 (22%), Positives = 11/22 (50%)

Query: 86  TCIIIYDDIILQHRQKGKIDFP 107
             + I   +++  R  G++ FP
Sbjct: 37  DRVPIRRVLLMMMRFDGRLGFP 58


>d1oywa3 c.37.1.19 (A:207-406) RecQ helicase domain {Escherichia
           coli [TaxId: 562]}
          Length = 200

 Score = 23.8 bits (50), Expect = 4.0
 Identities = 10/69 (14%), Positives = 25/69 (36%)

Query: 40  ILITTGALGNVVDHCLYGYVIDYIMIHTQTWSFAVFNLADLFISIGTCIIIYDDIILQHR 99
           I++ T A G  ++     +V+ + +       +     A         ++ YD   +   
Sbjct: 83  IVVATVAFGMGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWL 142

Query: 100 QKGKIDFPQ 108
           ++   + PQ
Sbjct: 143 RRCLEEKPQ 151


>d2aeea1 c.61.1.1 (A:1-208) Orotate PRTase {Streptococcus pyogenes
           [TaxId: 1314]}
          Length = 208

 Score = 23.2 bits (49), Expect = 5.9
 Identities = 10/47 (21%), Positives = 19/47 (40%), Gaps = 1/47 (2%)

Query: 59  VIDYIMIHTQTWSFAVFNLADLFISIGTCIIIYDDIILQHRQKGKID 105
           V+  + I T     A  N  +  I +   +  Y ++I   + +G I 
Sbjct: 145 VLGVVAIFTYELPKASQNFKEAGIKL-ITLSNYTELIAVAKLQGYIT 190


>d1j8fa_ c.31.1.5 (A:) Sirt2 histone deacetylase {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 323

 Score = 22.8 bits (48), Expect = 7.6
 Identities = 4/14 (28%), Positives = 8/14 (57%)

Query: 78  ADLFISIGTCIIIY 91
            DL + +GT + + 
Sbjct: 221 VDLLLVMGTSLQVQ 234


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.333    0.148    0.465 

Gapped
Lambda     K      H
   0.267   0.0463    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 439,753
Number of extensions: 18703
Number of successful extensions: 55
Number of sequences better than 10.0: 1
Number of HSP's gapped: 55
Number of HSP's successfully gapped: 16
Length of query: 108
Length of database: 2,407,596
Length adjustment: 68
Effective length of query: 40
Effective length of database: 1,473,956
Effective search space: 58958240
Effective search space used: 58958240
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (22.0 bits)
S2: 47 (22.5 bits)