BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254780749|ref|YP_003065162.1| lipoprotein signal peptidase
transmembrane [Candidatus Liberibacter asiaticus str. psy62]
         (108 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254780749|ref|YP_003065162.1| lipoprotein signal peptidase transmembrane [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 108

 Score =  217 bits (552), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 108/108 (100%), Positives = 108/108 (100%)

Query: 1   MLSNVSPTILVSIRILIIAFIFFIWKKNPKTKSIFDIGYILITTGALGNVVDHCLYGYVI 60
           MLSNVSPTILVSIRILIIAFIFFIWKKNPKTKSIFDIGYILITTGALGNVVDHCLYGYVI
Sbjct: 1   MLSNVSPTILVSIRILIIAFIFFIWKKNPKTKSIFDIGYILITTGALGNVVDHCLYGYVI 60

Query: 61  DYIMIHTQTWSFAVFNLADLFISIGTCIIIYDDIILQHRQKGKIDFPQ 108
           DYIMIHTQTWSFAVFNLADLFISIGTCIIIYDDIILQHRQKGKIDFPQ
Sbjct: 61  DYIMIHTQTWSFAVFNLADLFISIGTCIIIYDDIILQHRQKGKIDFPQ 108


>gi|254780384|ref|YP_003064797.1| serralysin [Candidatus Liberibacter asiaticus str. psy62]
          Length = 665

 Score = 24.6 bits (52), Expect = 0.43,   Method: Composition-based stats.
 Identities = 14/46 (30%), Positives = 26/46 (56%), Gaps = 8/46 (17%)

Query: 26  KKNPKTKSIFDIGYILITTGALGNVVDHCLYGYVIDYIMIHTQTWS 71
           K +P  ++I+D G          +++D  L G V +YI ++T++WS
Sbjct: 214 KDSPFIQTIYDSGG--------DDLLDLTLIGGVKNYIDLNTESWS 251


>gi|254780217|ref|YP_003064630.1| DNA polymerase III subunit delta' [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 347

 Score = 21.6 bits (44), Expect = 4.0,   Method: Composition-based stats.
 Identities = 11/34 (32%), Positives = 20/34 (58%)

Query: 1   MLSNVSPTILVSIRILIIAFIFFIWKKNPKTKSI 34
           ++S+ SPTIL +IR   ++  F    +N   K++
Sbjct: 165 LISHASPTILSTIRSRCLSIKFNSLSENNLYKAL 198


>gi|254780270|ref|YP_003064683.1| ATP-dependent protease La [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 820

 Score = 20.8 bits (42), Expect = 6.7,   Method: Composition-based stats.
 Identities = 7/20 (35%), Positives = 13/20 (65%)

Query: 77  LADLFISIGTCIIIYDDIIL 96
           +A   +SI TCI +Y ++ +
Sbjct: 700 MATAIVSIMTCIPVYKNVAM 719


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.333    0.148    0.465 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 72,607
Number of Sequences: 1233
Number of extensions: 2794
Number of successful extensions: 8
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 3
Number of HSP's gapped (non-prelim): 5
length of query: 108
length of database: 328,796
effective HSP length: 62
effective length of query: 46
effective length of database: 252,350
effective search space: 11608100
effective search space used: 11608100
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (22.0 bits)
S2: 32 (16.9 bits)