HHsearch alignment for GI: 254780750 and conserved domain: COG0249
>COG0249 MutS Mismatch repair ATPase (MutS family) [DNA replication, recombination, and repair].
Probab=100.00 E-value=0 Score=1745.83 Aligned_cols=837 Identities=46% Similarity=0.739 Sum_probs=776.2
Q ss_pred HHHHCCHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHHHHHCCEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 67728916899999998779929999808822200799999998618189107889988876265617669999999998
Q gi|254780750|r 21 NLKSSTPMMRQYIEIKSINPDSLVFYRMGDFYELFFDDALLASRCLGITLTKRGKHLGKDIPMCGVPVHTANHYIQKLIK 100 (920)
Q Consensus 21 ~~~~~TP~~~Qy~~iK~~~~D~il~fr~G~FYE~f~~DA~~aa~~L~i~lt~r~~~~~~~~pmaGvP~~~l~~yl~~Lv~ 100 (920)
T Consensus 2 ~~~~~tP~m~qy~~ik~~~~d~llffr~GdfYelf~~DA~~~s~~l~itlT~r~~-----~pm~gvP~h~~~~yl~~li~ 76 (843)
T COG0249 2 SKAKLTPMMQQYLEIKAQYPDTLLFFRMGDFYELFFEDAKIAARLLDITLTKRGN-----IPMAGVPYHALDYYLAKLIE 76 (843)
T ss_pred CCCCCCCHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHCCEEECCCC-----CCCCCCCCCCHHHHHHHHHH
T ss_conf 7233783899999988758763899845632663699999998760842315788-----76777764327799999996
Q ss_pred CCCEEEEEEECCCHHHHHHCCCCCCEEEEEEEEECCCCEECCHHCCCCCCCEEEEEEECCC-EEEEEEEECCCCEEEEEE
Q ss_conf 8985999950289788741289984554589997753030201038787736999995298-499999997865599960
Q gi|254780750|r 101 IGHRIAICEQIESPLEAKKRGNKSLVRRNVVRLVTPGTLTEDQLLSPTDSNYLMAVARIRT-EWAIAWIDISTGIFKIST 179 (920)
Q Consensus 101 ~GykVaiveQ~E~p~~~~~~~~~~~v~R~Vt~IiTpGT~~d~~~l~~~~~nyL~aI~~~~~-~~Gia~iDisTG~~~~~~ 179 (920)
T Consensus 77 ~g~kVAiceQ~e~~~~~-----k~~v~R~v~rv~TpGt~~d~~~l~~~~~n~l~a~~~~~~~~~gla~~dlstGef~~~~ 151 (843)
T COG0249 77 LGYKVAICEQLEDPAEA-----KGVVERKVVRVVTPGTLTDEALLSDRENNYLAALAIDRDGKVGLAFIDLSTGEFFVSE 151 (843)
T ss_pred CCCEEEEEECCCCHHHH-----CCCCEEEEEEEECCCEEECCCCCCCCCCCEEEEEEECCCCEEEEEEEECCCCEEEEEE
T ss_conf 79838999715581641-----6850257899988976422442346666549999966898799999981267499998
Q ss_pred CCHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHCCCCEECCCCCCCCHHHHHHHHHHHCCCCCCCCHHHHH-HHHHH
Q ss_conf 58789999985229857997077689678998874238815718521147134478899870878642102444-34688
Q gi|254780750|r 180 SNHDRLISDIMRIDPREIIFSEKELSHAEYKSLFETLGNVAVAQPNVFFDHSISESRIADYYNITTVDTFGSFS-QVEKT 258 (920)
Q Consensus 180 ~~~d~l~~~L~~l~P~EIii~~~~~~~~~~~~l~~~~~~~~~~~~~~~f~~~~~~~~l~~~~~~~~l~~~~~~~-~~~~~ 258 (920)
T Consensus 152 ~~~~~l~~~l~r~~p~Eil~~~~~~~~~~-~~~~~~~--~~~~~~~~~f~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~ 228 (843)
T COG0249 152 FEREKLLSELKRLQPKELLLSESLLSSTL-AEIQKGL--FVVRLPASFFDEDDAEEILSEYFGVRDLDGFGLISTPLALS 228 (843)
T ss_pred EEHHHHHHHHHHCCCCEEEECCCCCCHHH-HHHHHCE--EEEECCHHHCCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHH
T ss_conf 32899999998489857996655576245-6653100--13654445337427999999983866454424224538999
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEECCHHHCCEEEEECCCC-CCCCHHHHHHCCCCCCHHHHHHHHHHHHH
Q ss_conf 87777643687411222222113445745401425133201545412787-76412787630123433789999863100
Q gi|254780750|r 259 AAAAAISYIKKTQMVNKPTIGYPEREDIQSTLFIDSAARSNLEILRTLSG-SREQSLLKTIDYSITGAGGRLFAERIASP 337 (920)
Q Consensus 259 a~~all~Yl~~~~~~~~~~i~~~~~~~~~~~m~LD~~Tl~nLEI~~~~~g-~~~gSL~~~Ln~t~T~~G~RlLr~wL~~P 337 (920)
T Consensus 229 a~~~ll~Y~~~t~~~~l~~~~~~~~~~~~~~m~lD~~t~~nLEl~~~~~~~~~~gSL~~~ld~t~T~mG~RlL~~wl~~P 308 (843)
T COG0249 229 AAGALLSYLKDTQKTFLPHIQIIQRYDLEDYMVLDAATRRNLELFSNLRGNGKKGSLFWLLDRTVTPMGSRLLKRWLLQP 308 (843)
T ss_pred HHHHHHHHHHHHHHCCCCCCCCCEEECCCCEEEECHHHHHCCCCCCCCCCCCCCCCHHHHHCCCCCCHHHHHHHHHHHCC
T ss_conf 99999999998653224355634564358679973899711102224778998873999853677824679989976480
Q ss_pred CCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHH
Q ss_conf 23456789899999974022125889999975204834444567752100002120689999986556754302584577
Q gi|254780750|r 338 LTDSTKINTRLDSINFFIQNPILINPIQKILKSSPDVPRSLSRLKIGRGEPKDIAVIRDGIRSGINILNLFLKNDLPEEL 417 (920)
Q Consensus 338 L~d~~~I~~R~daVe~l~~~~~~~~~l~~~L~~i~DleRll~ri~~~~~~p~dl~~L~~sl~~~~~i~~~l~~~~~~~~l 417 (920)
T Consensus 309 L~~~~~I~~Rld~Ve~l~~~~~l~~~L~~~L~~v~DleRl~~Rl~~~~~~~rDl~~l~~~l~~~~~i~~~l~~~~~~~~l 388 (843)
T COG0249 309 LLDKEEIEERLDAVEELKDNPELREKLREMLKKVPDLERLLSRLSLGRASPRDLLRLRDSLEKIPEIFKLLSSLKSESDL 388 (843)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH
T ss_conf 35899999999999999865689999999985076799999999737998656999999999889999998525430235
Q ss_pred HHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHCCCCEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 87676577678--9999999998543101221046010168541145579988638999997768778873887511025
Q gi|254780750|r 418 RGAVEKLKKLP--QSLEKTLSSMLSDDLPTFKRDGGFLRDGADASLDETRSLRDQSKRIIASLQLKYAEETKIKNLKIKH 495 (920)
Q Consensus 418 ~~~~~~l~~l~--~~l~~~l~~~i~~~~~~~~~~~~~ik~g~d~eLD~lr~~~~~~~~~l~~l~~~~~~~~~i~sLki~~ 495 (920)
T Consensus 389 ~~~~~~i~~~~~~~e~~~ll~~~i~~~~~~~~~~-~ii~~g~~~eLd~lr~~~~~~~~~i~~le~~~r~~~gi~slki~~ 467 (843)
T COG0249 389 LLLLEDIESLDYLAELLELLETAINEDPPLAVRD-GIIKEGYNIELDELRDLLNNAKEWIAKLELEERERTGIKSLKIKY 467 (843)
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHCCH-HHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH
T ss_conf 6776444313407999999998721166233015-577511039999999999888999999999888864972121122
Q ss_pred CCCCEEEEEECCHHHHHCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH
Q ss_conf 58622376204114333441116876527985212000111345666433464377777643344788876543011257
Q gi|254780750|r 496 NNNLGYFIEVTSSSASVLKKDLESKDRFIHRQTMSNLTRFTTLELIDLENRITNATNSALLIELESFEILSNAIIEQSES 575 (920)
Q Consensus 496 n~~~gy~iEV~~~~~~~i~~~~~~~~~~i~~qt~~~~~Rf~t~eL~~l~~~i~~~~~~~~~~e~~~~~~l~~~i~~~~~~ 575 (920)
T Consensus 468 n~v~Gy~ievt~~~~~~~p~~------~ir~qt~kn~~rf~t~el~~~e~~i~~a~~~i~~lE~~l~~~~~~~i~~~~~~ 541 (843)
T COG0249 468 NKVYGYYIEVTKSNAKLVPDD------YIRRQTLKNAERFTTPELKELEEKLLDAEEKILALEYELFDELREKILAHINE 541 (843)
T ss_pred HCCCEEEEEECHHCCCCCCHH------HHHHHHHHCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 034605999542014558437------89998773246864888899999999999998999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCEECCCCCCEEECCCCCHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCEEEEE
Q ss_conf 98888999867788778887752588512104787140000468058876310287704443456358777766439999
Q gi|254780750|r 576 LDNASQVIAIIDISIALAILAKEQNYCRPIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLL 655 (920)
Q Consensus 576 l~~~~~~ia~lD~l~SlA~~a~~~~y~rP~i~~~~~l~i~~gRHPviE~~l~~~~~~~fVpNdi~l~~~~~~~~~~~~ii 655 (920)
T Consensus 542 l~~~a~aLa~lD~l~slA~~a~~~~y~rP~~~~~~~l~i~~gRHPvvE~~~~~~----fVpNd~~L~-----~~~~i~lI 612 (843)
T COG0249 542 LQALAKALAELDVLSSLAEIAAEQNYVRPEFVDSNDLEIKEGRHPVVEAVLDNG----FVPNDIDLS-----GNRRIILI 612 (843)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCCEECCCCCEEEEECCCCHHHHHCCCC----CCCCCEEEC-----CCCEEEEE
T ss_conf 999999999999999999998657987866638988799845761122212577----446865307-----99548999
Q ss_pred ECCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHCCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEE
Q ss_conf 67784407899999999999997198530353206822105676523766113853289999999999995899856999
Q gi|254780750|r 656 TGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVIL 735 (920)
Q Consensus 656 TGpNmgGKSt~lRqval~vilAQiG~fVPA~~a~i~~~D~IftRiGa~D~l~~g~STF~vEm~e~~~IL~~at~~SLVll 735 (920)
T Consensus 613 TGPNM~GKSTylRQvali~imAQiGsfVPA~~A~i~ivD~IfTRiGa~DDL~~G~STFMvEM~Eta~IL~~AT~~SLvil 692 (843)
T COG0249 613 TGPNMGGKSTYLRQVALIVILAQIGSFVPAEKARIGIVDRIFTRIGAADDLASGRSTFMVEMLETANILDNATERSLVIL 692 (843)
T ss_pred ECCCCCCCHHHHHHHHHHHHHHHCCCCEEHHHCCCCCCCEEEECCCCCCHHHCCCCHHHHHHHHHHHHHHHCCCCCEEEE
T ss_conf 78998861999999999999987499852887436653201121565100211651899999999999985798848999
Q ss_pred ECCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHCCCEEEEEEEEEEECCEEEEEEEEEECCCCCCHH
Q ss_conf 32588988056799999999999972698499974875797664306885899999996099277877774478988778
Q gi|254780750|r 736 DEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTDLSKSLKRFHNATLQVSDSNEGIIFLHKVIPGIADHSYG 815 (920)
Q Consensus 736 DElGrGTst~DG~aiA~aile~l~~~~~~~~lfaTHy~eL~~l~~~~~~v~n~~~~~~~~~~~i~flykl~~G~~~~Syg 815 (920)
T Consensus 693 DEiGRGTsT~DGlaIA~Av~eyL~~~~~~~tLFATHy~ELt~l~~~~~~v~N~h~~~~e~~~~i~Fl~kv~~G~a~~SyG 772 (843)
T COG0249 693 DEIGRGTSTYDGLAIAWAVLEYLHEKIGCRTLFATHYHELTELEEKLPQVKNYHMSAVEEGGDITFLYKVKPGIADKSYG 772 (843)
T ss_pred ECCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHCCCCCCEEEEEEEECCCCEEEEEEECCCCCCCCHH
T ss_conf 64668877413689999999999863583699961688887765115445504788897489658999834688886589
Q ss_pred HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHH
Q ss_conf 99999829998999999999999987630001111211111000011200354738999998607822279899999999
Q gi|254780750|r 816 IQVGKLAGLPNTVISRAYDILKTFEKLYHHNQKDMRLYYPEIQTKESKNNLSKNDKLFVEKIKCLNLDEMSPLTALKTLY 895 (920)
Q Consensus 816 i~vA~laG~p~~vi~~A~~~~~~le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~al~~l~ 895 (920)
T Consensus 773 i~VAklaGlP~~Vi~rA~~il~~le~~~~~~~~~~-----------~~~~~~~-~~~i~~~~~~~~~~~~tp~-al~~l~ 839 (843)
T COG0249 773 IHVAKLAGLPEEVIERAREILAELEKESRSSNLEL-----------NQKDLSL-FPKVLKALKSLDPDELTPR-ALNLLY 839 (843)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCH-----------HHHHHHH-HHHHHHHHHHCCHHHCCHH-HHHHHH
T ss_conf 99999929999999999999998750356753231-----------4566767-9999999870790004878-999999
Q ss_pred HHHH
Q ss_conf 9999
Q gi|254780750|r 896 AVKA 899 (920)
Q Consensus 896 ~lk~ 899 (920)
T Consensus 840 ~lk~ 843 (843)
T COG0249 840 ELKK 843 (843)
T ss_pred HHHC
T ss_conf 8529