HHsearch alignment for GI: 254780750 and conserved domain: COG3842
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism].
Probab=94.36 E-value=0.067 Score=32.62 Aligned_cols=136 Identities=25% Similarity=0.262 Sum_probs=74.2
Q ss_pred CEEEEEEEECCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHH--------HCCCCCCHHHCCCCCCC---EEEEEEE
Q ss_conf 044434563587777664399996778440789999999999999--------71985303532068221---0567652
Q gi|254780750|r 633 PFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMA--------QMGSYVPASYAHIGIVD---KLFSRVG 701 (920)
Q Consensus 633 ~fVpNdi~l~~~~~~~~~~~~iiTGpNmgGKSt~lRqval~vilA--------QiG~fVPA~~a~i~~~D---~IftRiG 701 (920)
T Consensus 18 ~~al~~isl~i----~~Gef~tlLGPSGcGKTTlLR~IAGfe~p~~G~I~l~g~~i~~lpp~kR~ig~VFQ~YALFPHmt 93 (352)
T COG3842 18 FTAVDDISLDI----KKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPPEKRPIGMVFQSYALFPHMT 93 (352)
T ss_pred EEEEECCEEEE----CCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHCCCCEEECCCCCCCCCC
T ss_conf 26773214454----48868999899888889999999677788886599999998889942265232606766688885
Q ss_pred CCCCCCCCCC-------H----HHHHHHHHHHH--------------------HH--HCCCCCEEEEECCCCCCCHHH--
Q ss_conf 3766113853-------2----89999999999--------------------99--589985699932588988056--
Q gi|254780750|r 702 SADNLASGRS-------T----FMVEMIETASI--------------------LN--QATNQSFVILDEIGRGTATLD-- 746 (920)
Q Consensus 702 a~D~l~~g~S-------T----F~vEm~e~~~I--------------------L~--~at~~SLVllDElGrGTst~D-- 746 (920)
T Consensus 94 V~~NVafGLk~~~~~~~~ei~~rV~e~L~lV~L~~~~~R~p~qLSGGQqQRVALARAL~~~P~vLLLDEPl---SaLD~k 170 (352)
T COG3842 94 VEENVAFGLKVRKKLKKAEIKARVEEALELVGLEGFADRKPHQLSGGQQQRVALARALVPEPKVLLLDEPL---SALDAK 170 (352)
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCHHHHHHCHHHHCHHHHHHHHHHHHHHCCCCHHHHCCCC---CCHHHH
T ss_conf 89975533310577877899999999998748544444276664827899999999742183544342740---023189
Q ss_pred -HHHHHHHHHHHHHHHCCCEEEEECCCHHHH
Q ss_conf -799999999999972698499974875797
Q gi|254780750|r 747 -GLSIAWATIEYLHETNRCRGLLATHFHELT 776 (920)
Q Consensus 747 -G~aiA~aile~l~~~~~~~~lfaTHy~eL~ 776 (920)
T Consensus 171 LR~~m-r~Elk~lq~~~giT~i~VTHDqeEA 200 (352)
T COG3842 171 LREQM-RKELKELQRELGITFVYVTHDQEEA 200 (352)
T ss_pred HHHHH-HHHHHHHHHHCCCEEEEEECCHHHH
T ss_conf 99999-9999999985597299997898998