HHsearch alignment for GI: 254780750 and conserved domain: COG4988

>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones].

Probab=96.66  E-value=0.064  Score=32.80  Aligned_cols=81  Identities=22%  Similarity=0.197  Sum_probs=45.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHC-CC-CCEECCCCCCEEEC--C--CCCHHHHHHHHHCCCCCEEEEEEEECCCCCCCC
Q ss_conf             988889998677887788877525-88-51210478714000--0--468058876310287704443456358777766
Q gi|254780750|r  576 LDNASQVIAIIDISIALAILAKEQ-NY-CRPIIDNSTNFIVK--D--GRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNS  649 (920)
Q Consensus       576 l~~~~~~ia~lD~l~SlA~~a~~~-~y-~rP~i~~~~~l~i~--~--gRHPviE~~l~~~~~~~fVpNdi~l~~~~~~~~  649 (920)
T Consensus       281 fH~~~~g~aa~d~i~~~l~~~~~~~~~~~~~~~~~~~~~ei~~~~l~~~y~----------~g~~~l~~l~~t~----~~  346 (559)
T COG4988         281 FHAAAAGEAAADKLFTLLESPVATPGSGEKAEVANEPPIEISLENLSFRYP----------DGKPALSDLNLTI----KA  346 (559)
T ss_pred             HHHHHHCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEECCEEEECC----------CCCCCCCCCEEEE----CC
T ss_conf             999850366898999972598777887643213568974666021478558----------9985566710675----48


Q ss_pred             CEEEEEECCCCCCHHHHHHHH
Q ss_conf             439999677844078999999
Q gi|254780750|r  650 GKLWLLTGPNMGGKSTFLRQN  670 (920)
Q Consensus       650 ~~~~iiTGpNmgGKSt~lRqv  670 (920)
T Consensus       347 g~~talvG~SGaGKSTLl~lL  367 (559)
T COG4988         347 GQLTALVGASGAGKSTLLNLL  367 (559)
T ss_pred             CCEEEEECCCCCCHHHHHHHH
T ss_conf             967999889999789999998