HHsearch alignment for GI: 254780750 and conserved domain: PRK00409
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed.
Probab=100.00 E-value=0 Score=726.06 Aligned_cols=502 Identities=21% Similarity=0.321 Sum_probs=430.1
Q ss_pred ECCHHHCCEEEEECCCCCCCCHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf 25133201545412787764127876301234337899998631002345678989999997402212588999997520
Q gi|254780750|r 292 IDSAARSNLEILRTLSGSREQSLLKTIDYSITGAGGRLFAERIASPLTDSTKINTRLDSINFFIQNPILINPIQKILKSS 371 (920)
Q Consensus 292 LD~~Tl~nLEI~~~~~g~~~gSL~~~Ln~t~T~~G~RlLr~wL~~PL~d~~~I~~R~daVe~l~~~~~~~~~l~~~L~~i 371 (920)
T Consensus 2 m~~~~l~~Lef~~--------i~~~l~~~~~t~~Gk~~l~~--L~P~~~~~~i~~~l~~t~E~~~l~~~~--~~~pl~~i 69 (780)
T PRK00409 2 MNEETLRVLEFNK--------IKEQLKTFAATKLGKEKVED--LKPLTSFEEVKEHLEETDEAAKILRLK--GFPPFEGV 69 (780)
T ss_pred CCHHHHHHCCHHH--------HHHHHHHHCCCHHHHHHHHC--CCCCCCHHHHHHHHHHHHHHHHHHHHC--CCCCCCCC
T ss_conf 4767888659899--------99999717589999999976--899899999999999999999999707--99996785
Q ss_pred CCHHHHHHHHHHH-HHCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 4834444567752-100002120689999986556754302584577876765776789999999998543101221046
Q gi|254780750|r 372 PDVPRSLSRLKIG-RGEPKDIAVIRDGIRSGINILNLFLKNDLPEELRGAVEKLKKLPQSLEKTLSSMLSDDLPTFKRDG 450 (920)
Q Consensus 372 ~DleRll~ri~~~-~~~p~dl~~L~~sl~~~~~i~~~l~~~~~~~~l~~~~~~l~~l~~~l~~~l~~~i~~~~~~~~~~~ 450 (920)
T Consensus 70 ~Di~~~l~r~~~g~~L~~~EL~~i~~~L~~~~~lk~~l~~~~~~p~L~~l~~~l~~~~-~L~~~I~~~Id--------~~ 140 (780)
T PRK00409 70 TDIDDALKRAEKGGVLSGDELLEIAKTLRYFRQLKRFIEDLEELPILEEWVAQIRTLP-ELEQEIHNCID--------EE 140 (780)
T ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCH-HHHHHHHHHCC--------CC
T ss_conf 1379999998658978999999999999999999999865544456999998575868-99999998758--------99
Q ss_pred CEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHH-HHCCCCCCCC--CCCCCCEEEEEECCHHHHHCCCCCCCCCCEEEEE
Q ss_conf 010168541145579988638999997768778-8738875110--2558622376204114333441116876527985
Q gi|254780750|r 451 GFLRDGADASLDETRSLRDQSKRIIASLQLKYA-EETKIKNLKI--KHNNNLGYFIEVTSSSASVLKKDLESKDRFIHRQ 527 (920)
Q Consensus 451 ~~ik~g~d~eLD~lr~~~~~~~~~l~~l~~~~~-~~~~i~sLki--~~n~~~gy~iEV~~~~~~~i~~~~~~~~~~i~~q 527 (920)
T Consensus 141 G~I~D~AS~eL~~IR~~i~~~~~~i~~~l~~~l~~~~~~~~Lqd~~it~R~gRyvlpVk~~~k~~v~-------GiVhd~ 213 (780)
T PRK00409 141 GEVKDSASEKLRGIRRQLRRKNSRIREKLNRIVRSKSLQKYLQDTIITIRNDRYVLPVKAEYKHAIK-------GIVHDQ 213 (780)
T ss_pred CEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCEEEEECCEEEEEEEHHHCCCCC-------EEEEEE
T ss_conf 8288887989999999999999999999999985111124012342799999899996367627788-------189998
Q ss_pred ECCCCHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEC
Q ss_conf 21200011134-56664334643777776433447888765430112579888899986778877888775258851210
Q gi|254780750|r 528 TMSNLTRFTTL-ELIDLENRITNATNSALLIELESFEILSNAIIEQSESLDNASQVIAIIDISIALAILAKEQNYCRPII 606 (920)
Q Consensus 528 t~~~~~Rf~t~-eL~~l~~~i~~~~~~~~~~e~~~~~~l~~~i~~~~~~l~~~~~~ia~lD~l~SlA~~a~~~~y~rP~i 606 (920)
T Consensus 214 S~SG~T~fIEP~~vveLnN~l~~L~~~e~~Ei~rIL~eLs~~v~~~~~~l~~~~~~l~~LD~~~AkA~~A~~~~~~~P~~ 293 (780)
T PRK00409 214 SSSGATLYIEPQSVVELNNEIRELRNKEKEEIERILKELSAKVAKNLDFLKFLNKIFDTLDFIFARARYAKALKATFPLF 293 (780)
T ss_pred CCCCCEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEE
T ss_conf 07998588552999988899999999999999999999999999879999999999999999999999999779863127
Q ss_pred CCCCCEEECCCCCHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCHH
Q ss_conf 47871400004680588763102877044434563587777664399996778440789999999999999719853035
Q gi|254780750|r 607 DNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPAS 686 (920)
Q Consensus 607 ~~~~~l~i~~gRHPviE~~l~~~~~~~fVpNdi~l~~~~~~~~~~~~iiTGpNmgGKSt~lRqval~vilAQiG~fVPA~ 686 (920)
T Consensus 294 ~~~~~i~L~~aRHPLL~~-------~~vVP~di~l~-----~~~~~liITGPNtGGKTv~LKtvgL~~lMaq~Gl~vPa~ 361 (780)
T PRK00409 294 NDEGKIDLRQARHPLLDG-------EKVVPKDIELG-----FDKTVLVITGPNTGGKTVTLKTLGLAALMAKSGLPIPAA 361 (780)
T ss_pred CCCCEEEEEECCCCCCCC-------CCCCCCEEEEC-----CCCEEEEEECCCCCCCEEHHHHHHHHHHHHHHCCCCCCC
T ss_conf 799808986035776366-------77257347866-----984189996898888563799999999999829997516
Q ss_pred H-CCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCE
Q ss_conf 3-206822105676523766113853289999999999995899856999325889880567999999999999726984
Q gi|254780750|r 687 Y-AHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCR 765 (920)
Q Consensus 687 ~-a~i~~~D~IftRiGa~D~l~~g~STF~vEm~e~~~IL~~at~~SLVllDElGrGTst~DG~aiA~aile~l~~~~~~~ 765 (920)
T Consensus 362 e~s~~~~f~~i~adIGD~QSie~~LSTFS~hm~~i~~il~~a~~~sLVLlDElG~GTDP~EGaALa~aile~l~~~-~~~ 440 (780)
T PRK00409 362 EPSEIPVFKEVFADIGDEQSIEQSLSTFSGHMTNIVRILEKADENSLVLFDELGAGTDPDEGAALAISILDYLRKR-GAK 440 (780)
T ss_pred CCCCCCCCCEEEEEECCCHHHHHCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHC-CCE
T ss_conf 8980423463899827712133265249999999999997389980881232358998456599999999999977-997
Q ss_pred EEEECCCHHHHHHHHHCCCEEEEEEEEEEECCEEEEEEEEEECCCCCCHHHHHHHHCCCCHHHHHHHHHHH
Q ss_conf 99974875797664306885899999996099277877774478988778999998299989999999999
Q gi|254780750|r 766 GLLATHFHELTDLSKSLKRFHNATLQVSDSNEGIIFLHKVIPGIADHSYGIQVGKLAGLPNTVISRAYDIL 836 (920)
Q Consensus 766 ~lfaTHy~eL~~l~~~~~~v~n~~~~~~~~~~~i~flykl~~G~~~~Sygi~vA~laG~p~~vi~~A~~~~ 836 (920)
T Consensus 441 ~i~TTH~~~lK~~a~~~~~~~nas~~FD~~t--l~PtYrl~~G~pG~S~A~~IA~rlGlp~~ii~~A~~~l 509 (780)
T PRK00409 441 IIATTHYKELKALKYNREGVENASVEFDEET--LRPTYRLLIGIPGRSNAFEIAKRLGLPPNIIEEAKKVY 509 (780)
T ss_pred EEEECCHHHHHHHHHCCCCCEEEEEEECCCC--CCCCEEEECCCCCCCHHHHHHHHHCCCHHHHHHHHHHH
T ss_conf 9994776999999727998189888874023--78606870599976369999999297999999999885