HHsearch alignment for GI: 254780750 and conserved domain: PRK06835
>PRK06835 DNA replication protein DnaC; Validated.
Probab=94.47 E-value=0.4 Score=26.85 Aligned_cols=102 Identities=16% Similarity=0.156 Sum_probs=56.4
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHHCCCCC---CHHHCCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHCC
Q ss_conf 99996778440789999999999999719853---035320682210567652376611385328999999999999589
Q gi|254780750|r 652 LWLLTGPNMGGKSTFLRQNALIVIMAQMGSYV---PASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIETASILNQAT 728 (920)
Q Consensus 652 ~~iiTGpNmgGKSt~lRqval~vilAQiG~fV---PA~~a~i~~~D~IftRiGa~D~l~~g~STF~vEm~e~~~IL~~at 728 (920)
T Consensus 185 nLlf~G~~G~GKTfLa~~IA~ell~--~g~sViy~ta~~----L~~~l----~~--~~~~~~~~----~~~~~~~l~~~D 248 (330)
T PRK06835 185 NLLFYGNTGTGKTFLSNCIAKELLD--RGKTVIYRTSDE----LIENL----RE--IRFNNDND----APELEDLLINCD 248 (330)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHH--CCCEEEEEEHHH----HHHHH----HH--HHCCCCCC----HHHHHHHHHHCC
T ss_conf 6698899999889999999999998--799499962999----99999----99--75457644----899999996189
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEECCCH
Q ss_conf 985699932588988056799999999999972698499974875
Q gi|254780750|r 729 NQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFH 773 (920)
Q Consensus 729 ~~SLVllDElGrGTst~DG~aiA~aile~l~~~~~~~~lfaTHy~ 773 (920)
T Consensus 249 ---LLIIDDLG~E~~t~~~~~~Lf~iIN~R~~~-~k~tIITTNl~ 289 (330)
T PRK06835 249 ---LLIIDDLGTESITEFSKTELFNLINKRLLM-NKKMIISTNLS 289 (330)
T ss_pred ---EEEEECCCCCCCCHHHHHHHHHHHHHHHHC-CCCEEEECCCC
T ss_conf ---899721034558868999999999999867-99979988999