HHsearch alignment for GI: 254780750 and conserved domain: PRK09183

>PRK09183 transposase/IS protein; Provisional.
Probab=96.19  E-value=0.046  Score=33.84  Aligned_cols=95  Identities=18%  Similarity=0.262  Sum_probs=60.9

Q ss_pred             EEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHCCCCCCCEEEEEEECCCCCCCCCCHHHHHHHH------HHHHHH-
Q ss_conf             9996778440789999999999999719853035320682210567652376611385328999999------999999-
Q gi|254780750|r  653 WLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFMVEMIE------TASILN-  725 (920)
Q Consensus       653 ~iiTGpNmgGKSt~lRqval~vilAQiG~fVPA~~a~i~~~D~IftRiGa~D~l~~g~STF~vEm~e------~~~IL~-  725 (920)
T Consensus       104 vil~G~~GtGKThLA~Alg~~A~~--~G~------------~v~f~~~~---~L-------~~~L~~a~~~~~~~~~l~r  159 (258)
T PRK09183        104 IVLLGPSGVGKTHLAIALGYEAVR--AGI------------KVRFTTAA---DL-------LLQLSTAQRQGRYKTTLQR  159 (258)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHH--CCC------------EEEEEEHH---HH-------HHHHHHHHHCCCHHHHHHH
T ss_conf             799899998689999999999998--799------------39997899---99-------9999999876859999998


Q ss_pred             HCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEECCCH
Q ss_conf             589985699932588988056799999999999972698499974875
Q gi|254780750|r  726 QATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFH  773 (920)
Q Consensus       726 ~at~~SLVllDElGrGTst~DG~aiA~aile~l~~~~~~~~lfaTHy~  773 (920)
T Consensus       160 ~l~~~dLLIiDdlG~~~~~~~~~~~lfeli~~Rye~-~-S~IiTSn~~  205 (258)
T PRK09183        160 GVMAPRLLIIDEIGYLPFSQEEANLFFQVIAKRYEK-G-AMILTSNLP  205 (258)
T ss_pred             HHCCCCEEEEHHHHCCCCCHHHHHHHHHHHHHHHCC-C-CEEEECCCC
T ss_conf             743465144313315468888999999999998576-7-789988999