HHsearch alignment for GI: 254780750 and conserved domain: PRK09361
>PRK09361 radB DNA repair and recombination protein RadB; Provisional.
Probab=92.59 E-value=0.79 Score=24.63 Aligned_cols=121 Identities=13% Similarity=0.132 Sum_probs=59.8
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHHH-CCCCCCHHHCCCCCCCEEEEEE-E-CCCCCCC-CCCHHHHH---HHHHH
Q ss_conf 643999967784407899999999999997-1985303532068221056765-2-3766113-85328999---99999
Q gi|254780750|r 649 SGKLWLLTGPNMGGKSTFLRQNALIVIMAQ-MGSYVPASYAHIGIVDKLFSRV-G-SADNLAS-GRSTFMVE---MIETA 721 (920)
Q Consensus 649 ~~~~~iiTGpNmgGKSt~lRqval~vilAQ-iG~fVPA~~a~i~~~D~IftRi-G-a~D~l~~-g~STF~vE---m~e~~ 721 (920)
T Consensus 22 ~G~itei~G~pG~GKTtl~lq~a~~~~~~g~~vlYidtE~~~~er~~qi~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~ 101 (224)
T PRK09361 22 RGTITQIYGPPGSGKTNICIQLAVEAARQGKKVIYIDTEGLSPERFKQIAGEDFEELLSNIIIFEPSSFEEQREAIQKAE 101 (224)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHCCCHHHHHHCCEEECCCCHHHHHHHHHHHH
T ss_conf 88799998999985999999999999974990999678767889999985657345420614724798899999999999
Q ss_pred HHHHHCCCCCEEEEECCCC--------CCCHHHHH-HHHH--HHHHHHHHHCCCEEEEECCC
Q ss_conf 9999589985699932588--------98805679-9999--99999997269849997487
Q gi|254780750|r 722 SILNQATNQSFVILDEIGR--------GTATLDGL-SIAW--ATIEYLHETNRCRGLLATHF 772 (920)
Q Consensus 722 ~IL~~at~~SLVllDElGr--------GTst~DG~-aiA~--aile~l~~~~~~~~lfaTHy 772 (920)
T Consensus 102 ~~~~--~~~~lvVIDSi~~~~~~e~~~~~~~-~~~~~l~~~~~~L~~~a~~~~~~vvl~nqV 160 (224)
T PRK09361 102 KIAK--ENVGLIVLDSATSLYRLELDDNDNS-KLNRELGKQISHLLSLARKHNIAVVITNQV 160 (224)
T ss_pred HHHH--CCCCEEEEECCHHHEEHHCCCCCCH-HHHHHHHHHHHHHHHHHHHCCCEEEEEEEE
T ss_conf 8750--5873899962301000001457658-999999999999999999719869999668