HHsearch alignment for GI: 254780750 and conserved domain: PRK12402
>PRK12402 replication factor C small subunit 2; Reviewed.
Probab=95.19 E-value=0.22 Score=28.76 Aligned_cols=104 Identities=19% Similarity=0.291 Sum_probs=50.1
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHHHHCCC-CCCHHHCCCCCCCEEEEEEECC----C---------CCCCCCCHHHHHHH
Q ss_conf 99967784407899999999999997198-5303532068221056765237----6---------61138532899999
Q gi|254780750|r 653 WLLTGPNMGGKSTFLRQNALIVIMAQMGS-YVPASYAHIGIVDKLFSRVGSA----D---------NLASGRSTFMVEMI 718 (920)
Q Consensus 653 ~iiTGpNmgGKSt~lRqval~vilAQiG~-fVPA~~a~i~~~D~IftRiGa~----D---------~l~~g~STF~vEm~ 718 (920)
T Consensus 39 lLf~GPpG~GKTt~A~~lA~~-----l~~~~~~~~~~~~nasd-~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~----~d 107 (337)
T PRK12402 39 LVVYGPSGSGKTAAVRALARE-----LYGDPWENNFTYFNVSD-FFDQ-GKKYLVEDPRFAHFYDDPKRKYKSV----ID 107 (337)
T ss_pred EEEECCCCCCHHHHHHHHHHH-----HCCCCCCCCCCEECCCC-CCCC-CCCEEECCCCHHHHHCCHHHCCCCH----HH
T ss_conf 988892984899999999999-----67997567833311653-1135-6400101664234420153327737----89
Q ss_pred HHHHHHHH-C------CCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHH--CCCEEEEECCCH
Q ss_conf 99999995-8------9985699932588988056799999999999972--698499974875
Q gi|254780750|r 719 ETASILNQ-A------TNQSFVILDEIGRGTATLDGLSIAWATIEYLHET--NRCRGLLATHFH 773 (920)
Q Consensus 719 e~~~IL~~-a------t~~SLVllDElGrGTst~DG~aiA~aile~l~~~--~~~~~lfaTHy~ 773 (920)
T Consensus 108 ~i~~ii~~~a~~~p~~~~~KiiIlDEad~lt~~------Aq~aLlk~lEe~~~~~~fIl~t~~~ 165 (337)
T PRK12402 108 NFKHILKEYASMRPLSADYKLILFDNAEALRED------AQQALRRIMERYSETCRFIFSTTQP 165 (337)
T ss_pred HHHHHHHHHHCCCCCCCCEEEEEEECCCCCCHH------HHHHHHHHHHCCCCCEEEEEECCCC
T ss_conf 999999998614887788049997071317999------9999998874088766998723864