HHsearch alignment for GI: 254780750 and conserved domain: PRK12402

>PRK12402 replication factor C small subunit 2; Reviewed.
Probab=95.19  E-value=0.22  Score=28.76  Aligned_cols=104  Identities=19%  Similarity=0.291  Sum_probs=50.1

Q ss_pred             EEEECCCCCCHHHHHHHHHHHHHHHHCCC-CCCHHHCCCCCCCEEEEEEECC----C---------CCCCCCCHHHHHHH
Q ss_conf             99967784407899999999999997198-5303532068221056765237----6---------61138532899999
Q gi|254780750|r  653 WLLTGPNMGGKSTFLRQNALIVIMAQMGS-YVPASYAHIGIVDKLFSRVGSA----D---------NLASGRSTFMVEMI  718 (920)
Q Consensus       653 ~iiTGpNmgGKSt~lRqval~vilAQiG~-fVPA~~a~i~~~D~IftRiGa~----D---------~l~~g~STF~vEm~  718 (920)
T Consensus        39 lLf~GPpG~GKTt~A~~lA~~-----l~~~~~~~~~~~~nasd-~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~----~d  107 (337)
T PRK12402         39 LVVYGPSGSGKTAAVRALARE-----LYGDPWENNFTYFNVSD-FFDQ-GKKYLVEDPRFAHFYDDPKRKYKSV----ID  107 (337)
T ss_pred             EEEECCCCCCHHHHHHHHHHH-----HCCCCCCCCCCEECCCC-CCCC-CCCEEECCCCHHHHHCCHHHCCCCH----HH
T ss_conf             988892984899999999999-----67997567833311653-1135-6400101664234420153327737----89


Q ss_pred             HHHHHHHH-C------CCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHH--CCCEEEEECCCH
Q ss_conf             99999995-8------9985699932588988056799999999999972--698499974875
Q gi|254780750|r  719 ETASILNQ-A------TNQSFVILDEIGRGTATLDGLSIAWATIEYLHET--NRCRGLLATHFH  773 (920)
Q Consensus       719 e~~~IL~~-a------t~~SLVllDElGrGTst~DG~aiA~aile~l~~~--~~~~~lfaTHy~  773 (920)
T Consensus       108 ~i~~ii~~~a~~~p~~~~~KiiIlDEad~lt~~------Aq~aLlk~lEe~~~~~~fIl~t~~~  165 (337)
T PRK12402        108 NFKHILKEYASMRPLSADYKLILFDNAEALRED------AQQALRRIMERYSETCRFIFSTTQP  165 (337)
T ss_pred             HHHHHHHHHHCCCCCCCCEEEEEEECCCCCCHH------HHHHHHHHHHCCCCCEEEEEECCCC
T ss_conf             999999998614887788049997071317999------9999998874088766998723864