HHsearch alignment for GI: 254780750 and conserved domain: PRK12726

>PRK12726 flagellar biosynthesis regulator FlhF; Provisional.
Probab=90.18  E-value=0.79  Score=24.63  Aligned_cols=89  Identities=17%  Similarity=0.274  Sum_probs=46.9

Q ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHHHHHCCC---CCCHHHCCCCCCCEEE--EE-EECCCCCCCCCCHHHHHHHHHH
Q ss_conf             6643999967784407899999999999997198---5303532068221056--76-5237661138532899999999
Q gi|254780750|r  648 NSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGS---YVPASYAHIGIVDKLF--SR-VGSADNLASGRSTFMVEMIETA  721 (920)
Q Consensus       648 ~~~~~~iiTGpNmgGKSt~lRqval~vilAQiG~---fVPA~~a~i~~~D~If--tR-iGa~D~l~~g~STF~vEm~e~~  721 (920)
T Consensus       204 ~~g~VIaLVGvnGvGKTTTiAKLA~--~l~~~gkkV~LVAaDTFRaAAiEQLk~~g~rlgV--pV~~~~d--pa~l~~av  277 (407)
T PRK12726        204 SNHRIISLIGQTGVGKTTTLVKLGW--QLLKQNRTVGFITTDTFRSGAVEQFQGYADKLDV--ELIVATS--PAELEEAV  277 (407)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHH--HHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCC--EEEEECC--HHHHHHHH
T ss_conf             3690899989998978999999999--9997799179997066778899999999999796--4998188--89999999


Q ss_pred             HHHHHCCCCCEEEEECCCCCC
Q ss_conf             999958998569993258898
Q gi|254780750|r  722 SILNQATNQSFVILDEIGRGT  742 (920)
Q Consensus       722 ~IL~~at~~SLVllDElGrGT  742 (920)
T Consensus       278 ~~~a~~~~~DvVIIDTAGRl~  298 (407)
T PRK12726        278 QYMTYVNCVDHILIDTVGRNY  298 (407)
T ss_pred             HHHHHCCCCCEEEEECCCCCC
T ss_conf             999862899989996999881