HHsearch alignment for GI: 254780750 and conserved domain: PRK12726
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional.
Probab=90.18 E-value=0.79 Score=24.63 Aligned_cols=89 Identities=17% Similarity=0.274 Sum_probs=46.9
Q ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHHHHCCC---CCCHHHCCCCCCCEEE--EE-EECCCCCCCCCCHHHHHHHHHH
Q ss_conf 6643999967784407899999999999997198---5303532068221056--76-5237661138532899999999
Q gi|254780750|r 648 NSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGS---YVPASYAHIGIVDKLF--SR-VGSADNLASGRSTFMVEMIETA 721 (920)
Q Consensus 648 ~~~~~~iiTGpNmgGKSt~lRqval~vilAQiG~---fVPA~~a~i~~~D~If--tR-iGa~D~l~~g~STF~vEm~e~~ 721 (920)
T Consensus 204 ~~g~VIaLVGvnGvGKTTTiAKLA~--~l~~~gkkV~LVAaDTFRaAAiEQLk~~g~rlgV--pV~~~~d--pa~l~~av 277 (407)
T PRK12726 204 SNHRIISLIGQTGVGKTTTLVKLGW--QLLKQNRTVGFITTDTFRSGAVEQFQGYADKLDV--ELIVATS--PAELEEAV 277 (407)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHH--HHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCC--EEEEECC--HHHHHHHH
T ss_conf 3690899989998978999999999--9997799179997066778899999999999796--4998188--89999999
Q ss_pred HHHHHCCCCCEEEEECCCCCC
Q ss_conf 999958998569993258898
Q gi|254780750|r 722 SILNQATNQSFVILDEIGRGT 742 (920)
Q Consensus 722 ~IL~~at~~SLVllDElGrGT 742 (920)
T Consensus 278 ~~~a~~~~~DvVIIDTAGRl~ 298 (407)
T PRK12726 278 QYMTYVNCVDHILIDTVGRNY 298 (407)
T ss_pred HHHHHCCCCCEEEEECCCCCC
T ss_conf 999862899989996999881