HHsearch alignment for GI: 254780750 and conserved domain: PRK13537
>PRK13537 lipooligosaccharide transporter ATP-binding subunit; Provisional.
Probab=97.78 E-value=0.00067 Score=47.56 Aligned_cols=139 Identities=24% Similarity=0.343 Sum_probs=72.0
Q ss_pred EEEEEEEECCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHC------CCCCCH----HHCCCCCC---CEEEEEE
Q ss_conf 4443456358777766439999677844078999999999999971------985303----53206822---1056765
Q gi|254780750|r 634 FIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQM------GSYVPA----SYAHIGIV---DKLFSRV 700 (920)
Q Consensus 634 fVpNdi~l~~~~~~~~~~~~iiTGpNmgGKSt~lRqval~vilAQi------G~fVPA----~~a~i~~~---D~IftRi 700 (920)
T Consensus 19 ~al~~vs~~V----~~Gei~gllGpNGAGKTTli~~l~Gl~~-p~sG~v~i~G~~i~~~~~~~r~~iG~~pq~~~l~~~l 93 (304)
T PRK13537 19 LVVDGLSFHV----QPGECFGLLGPNGAGKTTTLKMLLGLTH-PDAGTISLCGEPVPSRARHARQRVGVVPQFDNLDPDF 93 (304)
T ss_pred EEECCEEEEE----CCCCEEEEECCCCCCHHHHHHHHHCCCC-CCCCEEEECCEECCCCHHHHHHCEEEEECCCCCCCCC
T ss_conf 9983717788----6995999999989729999999977956-8976899999988756288873559991776568898
Q ss_pred ECCCCCC----------------------------------CCCCHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHH
Q ss_conf 2376611----------------------------------385328999999999999589985699932588988056
Q gi|254780750|r 701 GSADNLA----------------------------------SGRSTFMVEMIETASILNQATNQSFVILDEIGRGTATLD 746 (920)
Q Consensus 701 Ga~D~l~----------------------------------~g~STF~vEm~e~~~IL~~at~~SLVllDElGrGTst~D 746 (920)
T Consensus 94 tv~e~l~~~~~~~g~~~~~~~~~~~~ll~~~~L~~~~~~~~~~lSgG~kqrl~ia~a--l~~~P~lliLDEPT~GLDp~~ 171 (304)
T PRK13537 94 TVRENLLVFGRYFGLSAAAARALVPPLLEFAKLENKADAKVGELSGGMKRRLTLARA--LVNDPDVLVLDEPTTGLDPQA 171 (304)
T ss_pred CHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHCCCHHHCCHHHHHHHHHHHH--HHCCCCEEEEECCCCCCCHHH
T ss_conf 999999999997299999999999999997799568567366799999999999999--837999999938866789999
Q ss_pred HHHHHHHHHHHHHHHCCCEEEEECCCHHHHH-HHHH
Q ss_conf 7999999999999726984999748757976-6430
Q gi|254780750|r 747 GLSIAWATIEYLHETNRCRGLLATHFHELTD-LSKS 781 (920)
Q Consensus 747 G~aiA~aile~l~~~~~~~~lfaTHy~eL~~-l~~~ 781 (920)
T Consensus 172 r-~~i~~~i~~l~~~-G~TillttH~l~E~e~lcDr 205 (304)
T PRK13537 172 R-HLMWERLRSLLAR-GKTILLTTHFMEEAERLCDR 205 (304)
T ss_pred H-HHHHHHHHHHHHC-CCEEEEECCCHHHHHHHCCE
T ss_conf 9-9999999999968-99999988848999986999