HHsearch alignment for GI: 254780750 and conserved domain: PRK13541
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional.
Probab=98.22 E-value=7.9e-05 Score=54.51 Aligned_cols=128 Identities=20% Similarity=0.211 Sum_probs=69.8
Q ss_pred EEEEEECCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHCC-C-----C-CCCEEEEEEECCCCCCC
Q ss_conf 434563587777664399996778440789999999999999719853035320-6-----8-22105676523766113
Q gi|254780750|r 636 ANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAH-I-----G-IVDKLFSRVGSADNLAS 708 (920)
Q Consensus 636 pNdi~l~~~~~~~~~~~~iiTGpNmgGKSt~lRqval~vilAQiG~fVPA~~a~-i-----~-~~D~IftRiGa~D~l~~ 708 (920)
T Consensus 16 l~disl~i----~~G~i~~i~G~NGsGKSTLlk~i~--------Gl~~p~~G~I~~~~~~~~~~~~~~~~~i~~~~~l~~ 83 (195)
T PRK13541 16 LFDLSITF----LPSAITYIKGANGCGKSSLLRMIA--------GIMQPSSGNIYYKNCNINNIAKPYCTYIGHNLGLKL 83 (195)
T ss_pred EEEEEEEE----CCCCEEEEECCCCCCHHHHHHHHH--------CCCCCCCEEEEECCEEHHHHCHHHCEEECCCCCCCC
T ss_conf 99777787----799799999999981999999996--------798898408999999920324635366355346787
Q ss_pred CC---------------------------------------CHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHH
Q ss_conf 85---------------------------------------328999999999999589985699932588988056799
Q gi|254780750|r 709 GR---------------------------------------STFMVEMIETASILNQATNQSFVILDEIGRGTATLDGLS 749 (920)
Q Consensus 709 g~---------------------------------------STF~vEm~e~~~IL~~at~~SLVllDElGrGTst~DG~a 749 (920)
T Consensus 84 ~ltv~enl~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~kqrv~iAra--l~~~p~llllDEPt~~LD~-~~~~ 160 (195)
T PRK13541 84 EMTVFENLKFWSEIYNSVETLYAAIHYFKLHDLLDEKCYSLSSGMQKVVALARL--IACQSDLWLLDEVETNLSK-ENRD 160 (195)
T ss_pred CCCHHHHHHHHHHHCCHHHHHHHHHHHCCCHHHHHCCHHHCCHHHHHHHHHHHH--HHHCCCEEEEECCCCCCCH-HHHH
T ss_conf 776999999999862839999999998498756648664599999999999999--9709999999787655999-9999
Q ss_pred HHHHHHHHHHHHCCCEEEEECCCHHHHHHH
Q ss_conf 999999999972698499974875797664
Q gi|254780750|r 750 IAWATIEYLHETNRCRGLLATHFHELTDLS 779 (920)
Q Consensus 750 iA~aile~l~~~~~~~~lfaTHy~eL~~l~ 779 (920)
T Consensus 161 ~i~~li~~~~~-~g~~ili~sH~~~~i~~a 189 (195)
T PRK13541 161 LLNNLIVMKAN-SGGIVLLSSHLESSIKSA 189 (195)
T ss_pred HHHHHHHHHHH-CCCEEEEECCCHHHHHHC
T ss_conf 99999999983-999999983798999419