HHsearch alignment for GI: 254780750 and conserved domain: PRK13543
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional.
Probab=98.23 E-value=0.00023 Score=50.98 Aligned_cols=153 Identities=18% Similarity=0.196 Sum_probs=73.1
Q ss_pred CEECCCCCCEEECCCCCHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCC
Q ss_conf 12104787140000468058876310287704443456358777766439999677844078999999999999971985
Q gi|254780750|r 603 RPIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSY 682 (920)
Q Consensus 603 rP~i~~~~~l~i~~gRHPviE~~l~~~~~~~fVpNdi~l~~~~~~~~~~~~iiTGpNmgGKSt~lRqval~vilAQiG~f 682 (920)
T Consensus 3 ~p~~~~~P~L~~~~ls~~---------~~~~~vl~~isf~v----~~Ge~~~l~GpNGaGKTTLlr~l~Gl~-~p~~G~I 68 (214)
T PRK13543 3 EPLHTAPPLLAAHALAFS---------RNEEPVFGPLDFHV----DAGEALLVQGDNGAGKTTLLRVLAGLL-HVESGQI 68 (214)
T ss_pred CCCCCCCCEEEEEEEEEE---------ECCEEEEECEEEEE----CCCCEEEEECCCCCCHHHHHHHHHCCC-CCCCEEE
T ss_conf 988999975999827999---------79999982638898----189899999999987999999997697-7884199
Q ss_pred C----CHHHCCCCCCCEEEEEEECCCCCCCCCCHH-----------------------------------------HHHH
Q ss_conf 3----035320682210567652376611385328-----------------------------------------9999
Q gi|254780750|r 683 V----PASYAHIGIVDKLFSRVGSADNLASGRSTF-----------------------------------------MVEM 717 (920)
Q Consensus 683 V----PA~~a~i~~~D~IftRiGa~D~l~~g~STF-----------------------------------------~vEm 717 (920)
T Consensus 69 ~~~g~~~~~~---~~~~~~~~~~~~~~l~~~lt~~enl~~~~~l~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqR 145 (214)
T PRK13543 69 QIDGKTATRG---DRSRFMAYLGHLPGLKADLSTLENLHFLCGLHGRRAKQMPGSALAIVGLAGYEDALVRQLSAGQRKR 145 (214)
T ss_pred EECCEECCCH---HHCCEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCHHCCCHHHCCHHHHHH
T ss_conf 9999999754---0213589980145446887699999999862587799999999998699440007823489999999
Q ss_pred HHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHH
Q ss_conf 99999999589985699932588988056799999999999972698499974875797
Q gi|254780750|r 718 IETASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELT 776 (920)
Q Consensus 718 ~e~~~IL~~at~~SLVllDElGrGTst~DG~aiA~aile~l~~~~~~~~lfaTHy~eL~ 776 (920)
T Consensus 146 v~lA~a--l~~~p~illLDEPt~~LD~-~~~~~l~~~l~~~~~~-g~tvl~~tHd~~~~ 200 (214)
T PRK13543 146 LALARL--WLSPAPLWLLDEPYANLDL-EGITLVNRMISAHLRG-GGAALVTTHGAYAA 200 (214)
T ss_pred HHHHHH--HHCCCCEEEEECCCCCCCH-HHHHHHHHHHHHHHHC-CCEEEEECCCHHHH
T ss_conf 999999--8579999998099888999-9999999999999867-99999991998999