HHsearch alignment for GI: 254780750 and conserved domain: PRK13543

>PRK13543 cytochrome c biogenesis protein CcmA; Provisional.
Probab=98.23  E-value=0.00023  Score=50.98  Aligned_cols=153  Identities=18%  Similarity=0.196  Sum_probs=73.1

Q ss_pred             CEECCCCCCEEECCCCCHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCC
Q ss_conf             12104787140000468058876310287704443456358777766439999677844078999999999999971985
Q gi|254780750|r  603 RPIIDNSTNFIVKDGRHPIVEKTLKQQSSKPFIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSY  682 (920)
Q Consensus       603 rP~i~~~~~l~i~~gRHPviE~~l~~~~~~~fVpNdi~l~~~~~~~~~~~~iiTGpNmgGKSt~lRqval~vilAQiG~f  682 (920)
T Consensus         3 ~p~~~~~P~L~~~~ls~~---------~~~~~vl~~isf~v----~~Ge~~~l~GpNGaGKTTLlr~l~Gl~-~p~~G~I   68 (214)
T PRK13543          3 EPLHTAPPLLAAHALAFS---------RNEEPVFGPLDFHV----DAGEALLVQGDNGAGKTTLLRVLAGLL-HVESGQI   68 (214)
T ss_pred             CCCCCCCCEEEEEEEEEE---------ECCEEEEECEEEEE----CCCCEEEEECCCCCCHHHHHHHHHCCC-CCCCEEE
T ss_conf             988999975999827999---------79999982638898----189899999999987999999997697-7884199


Q ss_pred             C----CHHHCCCCCCCEEEEEEECCCCCCCCCCHH-----------------------------------------HHHH
Q ss_conf             3----035320682210567652376611385328-----------------------------------------9999
Q gi|254780750|r  683 V----PASYAHIGIVDKLFSRVGSADNLASGRSTF-----------------------------------------MVEM  717 (920)
Q Consensus       683 V----PA~~a~i~~~D~IftRiGa~D~l~~g~STF-----------------------------------------~vEm  717 (920)
T Consensus        69 ~~~g~~~~~~---~~~~~~~~~~~~~~l~~~lt~~enl~~~~~l~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqR  145 (214)
T PRK13543         69 QIDGKTATRG---DRSRFMAYLGHLPGLKADLSTLENLHFLCGLHGRRAKQMPGSALAIVGLAGYEDALVRQLSAGQRKR  145 (214)
T ss_pred             EECCEECCCH---HHCCEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCHHCCCHHHCCHHHHHH
T ss_conf             9999999754---0213589980145446887699999999862587799999999998699440007823489999999


Q ss_pred             HHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHH
Q ss_conf             99999999589985699932588988056799999999999972698499974875797
Q gi|254780750|r  718 IETASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELT  776 (920)
Q Consensus       718 ~e~~~IL~~at~~SLVllDElGrGTst~DG~aiA~aile~l~~~~~~~~lfaTHy~eL~  776 (920)
T Consensus       146 v~lA~a--l~~~p~illLDEPt~~LD~-~~~~~l~~~l~~~~~~-g~tvl~~tHd~~~~  200 (214)
T PRK13543        146 LALARL--WLSPAPLWLLDEPYANLDL-EGITLVNRMISAHLRG-GGAALVTTHGAYAA  200 (214)
T ss_pred             HHHHHH--HHCCCCEEEEECCCCCCCH-HHHHHHHHHHHHHHHC-CCEEEEECCCHHHH
T ss_conf             999999--8579999998099888999-9999999999999867-99999991998999