HHsearch alignment for GI: 254780750 and conserved domain: TIGR03522
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=97.87 E-value=0.00029 Score=50.34 Aligned_cols=138 Identities=19% Similarity=0.224 Sum_probs=72.3
Q ss_pred EEEEEEEECCCCCCCCCEEEEEECCCCCCHHHHHHHHHHH--------------------HHHHHCCCCCCHHHC---CC
Q ss_conf 4443456358777766439999677844078999999999--------------------999971985303532---06
Q gi|254780750|r 634 FIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALI--------------------VIMAQMGSYVPASYA---HI 690 (920)
Q Consensus 634 fVpNdi~l~~~~~~~~~~~~iiTGpNmgGKSt~lRqval~--------------------vilAQiG~fVPA~~a---~i 690 (920)
T Consensus 16 ~al~~vsf~v----~~Gei~gllGpNGAGKTTl~~~l~Gl~~p~~G~i~i~G~~~~~~~~~~~~~ig-~~pq~~~l~~~l 90 (301)
T TIGR03522 16 NALDEVSFEA----QKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQNPKEVQRNIG-YLPEHNPLYLDM 90 (301)
T ss_pred EEECCEEEEE----CCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCHHHHHHHCE-EECCCCCCCCCC
T ss_conf 9973606788----59819999999998199999999679568977799927513448799985376-745556567888
Q ss_pred CCCCEE--EE-------------------EEECCC---CCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHH
Q ss_conf 822105--67-------------------652376---611385328999999999999589985699932588988056
Q gi|254780750|r 691 GIVDKL--FS-------------------RVGSAD---NLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTATLD 746 (920)
Q Consensus 691 ~~~D~I--ft-------------------RiGa~D---~l~~g~STF~vEm~e~~~IL~~at~~SLVllDElGrGTst~D 746 (920)
T Consensus 91 tv~e~l~~~~~~~g~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~kqrl~la~a--L~~~P~lliLDEPt~GLDp~~ 168 (301)
T TIGR03522 91 YVREYLQFIAGIYGMKGQLLKQRVEEMIELVGLRPEQHKKIGQLSKGYRQRVGLAQA--LIHDPKVLILDEPTTGLDPNQ 168 (301)
T ss_pred CHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCHHHHCCHHHHCCHHHHHHHHHHHH--HCCCCCEEEEECCCCCCCHHH
T ss_conf 999999999997399989999999999988188566548276779988445998898--707998999948866789899
Q ss_pred HHHHHHHHHHHHHHHCCCEEEEECCCHHHH-HHHHH
Q ss_conf 799999999999972698499974875797-66430
Q gi|254780750|r 747 GLSIAWATIEYLHETNRCRGLLATHFHELT-DLSKS 781 (920)
Q Consensus 747 G~aiA~aile~l~~~~~~~~lfaTHy~eL~-~l~~~ 781 (920)
T Consensus 169 -~~~~~~~l~~l~-~-~~TillssH~l~e~e~lcdr 201 (301)
T TIGR03522 169 -LVEIRNVIKNIG-K-DKTIILSTHIMQEVEAICDR 201 (301)
T ss_pred -HHHHHHHHHHHC-C-CCEEEEECCCHHHHHHHCCE
T ss_conf -999999999875-9-99999987858999986999