HHsearch alignment for GI: 254780750 and conserved domain: TIGR03608
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=97.98 E-value=0.00017 Score=51.98 Aligned_cols=130 Identities=19% Similarity=0.251 Sum_probs=70.9
Q ss_pred EEEEEEEECCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHCCCCCCCEEEE-------------EE
Q ss_conf 44434563587777664399996778440789999999999999719853035320682210567-------------65
Q gi|254780750|r 634 FIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFS-------------RV 700 (920)
Q Consensus 634 fVpNdi~l~~~~~~~~~~~~iiTGpNmgGKSt~lRqval~vilAQiG~fVPA~~a~i~~~D~Ift-------------Ri 700 (920)
T Consensus 12 ~vL~~vsl~i----~~Ge~~~i~GpSGsGKSTLL~~i~gl---------~~p~sG~i~~~g~~~~~~~~~~~~~~rr~~i 78 (206)
T TIGR03608 12 TILDDLNLTI----EKGKMVAIVGESGSGKSTLLNIIGLL---------EKPDSGQVYLNGQETPPINSKKASKFRREKL 78 (206)
T ss_pred EEECCEEEEE----CCCCEEEEECCCCCCHHHHHHHHHCC---------CCCCCEEEEECCEECCCCCHHHHHHHHHCCE
T ss_conf 9975807798----69989999879997099999999759---------9989759999999999899889999986588
Q ss_pred EC--CC-CCCCCCCHH--------------------HHHHHHH---------------------HHHHH-HCCCCCEEEE
Q ss_conf 23--76-611385328--------------------9999999---------------------99999-5899856999
Q gi|254780750|r 701 GS--AD-NLASGRSTF--------------------MVEMIET---------------------ASILN-QATNQSFVIL 735 (920)
Q Consensus 701 Ga--~D-~l~~g~STF--------------------~vEm~e~---------------------~~IL~-~at~~SLVll 735 (920)
T Consensus 79 G~VfQ~~~L~~~ltV~eNi~l~l~~~~~~~~~~~~~~~~~L~~vgl~~~~~~~p~~LSGGe~QRVAIARAL~~~P~illa 158 (206)
T TIGR03608 79 GYLFQNFALIENETVEENLDLALKYSKLSKKEKREKKKEALEKVGLNLKLKQKIYELSGGEQQRVALARAILKPSELILA 158 (206)
T ss_pred EEECCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHCCCHHCCHHHHHHHHHHHHHHCCCCEEEE
T ss_conf 99857987679891999999999865999999999999999986990565299244486999999999998249999996
Q ss_pred ECCCCCCCHHHHH--HHHHHHHHHHHHHCCCEEEEECCCHHHHHHHH
Q ss_conf 3258898805679--99999999999726984999748757976643
Q gi|254780750|r 736 DEIGRGTATLDGL--SIAWATIEYLHETNRCRGLLATHFHELTDLSK 780 (920)
Q Consensus 736 DElGrGTst~DG~--aiA~aile~l~~~~~~~~lfaTHy~eL~~l~~ 780 (920)
T Consensus 159 DEP---T~~LD~~~~~~i~~ll~~l~~~-g~tii~vTHd~~~a~~~D 201 (206)
T TIGR03608 159 DEP---TGSLDPKNRDEVLDLLLELNDE-GKTIIIVTHDPEVAEQAD 201 (206)
T ss_pred CCC---CCCCCHHHHHHHHHHHHHHHHC-CCEEEEECCCHHHHHHCC
T ss_conf 399---8778999999999999999867-999999898789998699