HHsearch alignment for GI: 254780750 and conserved domain: cd01122
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=95.93 E-value=0.025 Score=35.80 Aligned_cols=44 Identities=36% Similarity=0.403 Sum_probs=31.9
Q ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHCCCCC
Q ss_conf 664399996778440789999999999999719853035320682
Q gi|254780750|r 648 NSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGI 692 (920)
Q Consensus 648 ~~~~~~iiTGpNmgGKSt~lRqval~vilAQiG~fVPA~~a~i~~ 692 (920)
T Consensus 28 ~~GeL~viaarpg~GKT~f~~~~a~~~~-~~~g~~vl~~SlEm~~ 71 (271)
T cd01122 28 RKGELIILTAGTGVGKTTFLREYALDLI-TQHGVRVGTISLEEPV 71 (271)
T ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHHH-HHCCCEEEEEECCCCH
T ss_conf 9980899996899869999999999999-9769908999704999