HHsearch alignment for GI: 254780750 and conserved domain: cd03214
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=98.01 E-value=0.0001 Score=53.63 Aligned_cols=127 Identities=21% Similarity=0.254 Sum_probs=69.1
Q ss_pred EEEEEEECCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHCCCCCCCEEEEEEECCCCCCCCCCHHH
Q ss_conf 44345635877776643999967784407899999999999997198530353206822105676523766113853289
Q gi|254780750|r 635 IANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSADNLASGRSTFM 714 (920)
Q Consensus 635 VpNdi~l~~~~~~~~~~~~iiTGpNmgGKSt~lRqval~vilAQiG~fVPA~~a~i~~~D~IftRiGa~D~l~~g~STF~ 714 (920)
T Consensus 14 il~~is~~i----~~Ge~~~liG~nGsGKTTLl~~i~--------G~~~~~-~G~I~~~g~~i~~~~~-~~~~~~i~-~v 78 (180)
T cd03214 14 VLDDLSLSI----EAGEIVGILGPNGAGKSTLLKTLA--------GLLKPS-SGEILLDGKDLASLSP-KELARKIA-YV 78 (180)
T ss_pred EEECEEEEE----CCCCEEEEECCCCCCHHHHHHHHH--------CCCCCC-CCEEEECCEECCCCCH-HHHHCCCC-HH
T ss_conf 880437788----699799999899988999999995--------798998-7289999999896999-99955464-99
Q ss_pred ---HH-------------------HHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEECCC
Q ss_conf ---99-------------------99999999958998569993258898805679999999999997269849997487
Q gi|254780750|r 715 ---VE-------------------MIETASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHF 772 (920)
Q Consensus 715 ---vE-------------------m~e~~~IL~~at~~SLVllDElGrGTst~DG~aiA~aile~l~~~~~~~~lfaTHy 772 (920)
T Consensus 79 ~Q~l~~~~l~~~~~~~~~~LSGGqkQrv~iA~aL~~~P~ililDEPts~LD~~~~~~-i~~~i~~l~~~~~~tii~itHd 157 (180)
T cd03214 79 PQALELLGLAHLADRPFNELSGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIE-LLELLRRLARERGKTVVMVLHD 157 (180)
T ss_pred HHHHHHCCCHHHHCCCHHHCCHHHHHHHHHHHHHHHCCCEEEECCCCCCCCHHHHHH-HHHHHHHHHHHCCCEEEEEECC
T ss_conf 999998599778649910379999999999999986896478858754479999999-9999999998469899999079
Q ss_pred HHHHH
Q ss_conf 57976
Q gi|254780750|r 773 HELTD 777 (920)
Q Consensus 773 ~eL~~ 777 (920)
T Consensus 158 l~~~~ 162 (180)
T cd03214 158 LNLAA 162 (180)
T ss_pred HHHHH
T ss_conf 89999