HHsearch alignment for GI: 254780750 and conserved domain: cd03215
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=98.02 E-value=7.1e-05 Score=54.86 Aligned_cols=135 Identities=19% Similarity=0.172 Sum_probs=70.6
Q ss_pred EEEEEEEECCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHH--------------------HHHCC-CCCCHHHCCCCC
Q ss_conf 444345635877776643999967784407899999999999--------------------99719-853035320682
Q gi|254780750|r 634 FIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVI--------------------MAQMG-SYVPASYAHIGI 692 (920)
Q Consensus 634 fVpNdi~l~~~~~~~~~~~~iiTGpNmgGKSt~lRqval~vi--------------------lAQiG-~fVPA~~a~i~~ 692 (920)
T Consensus 14 ~aL~~vsl~v----~~GEi~~liG~nGaGKSTll~~l~G~~~p~~G~I~~~G~~~~~~~~~~~~~~~i~~vp~~r~~--- 86 (182)
T cd03215 14 GAVRDVSFEV----RAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPRDAIRAGIAYVPEDRKR--- 86 (182)
T ss_pred CCEECEEEEE----CCCCEEEEECCCCCCCCHHHHHHCCCCCCCCCEEEECCEECCCCCHHHHHHCCEEEEEHHHHH---
T ss_conf 8762317898----599699998889999263778766986788775999999988649999997896996020766---
Q ss_pred CCEEEEEEECCCCCCCC--CCHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEEC
Q ss_conf 21056765237661138--5328999999999999589985699932588988056799999999999972698499974
Q gi|254780750|r 693 VDKLFSRVGSADNLASG--RSTFMVEMIETASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLAT 770 (920)
Q Consensus 693 ~D~IftRiGa~D~l~~g--~STF~vEm~e~~~IL~~at~~SLVllDElGrGTst~DG~aiA~aile~l~~~~~~~~lfaT 770 (920)
T Consensus 87 -~~l~~~~~v~en~~~~~~LSGG~~Qrv~lAra--l~~~p~llllDEPT~gLD~~~~-~~i~~~i~~l~~~-g~tvi~is 161 (182)
T cd03215 87 -EGLVLDLSVAENIALSSLLSGGNQQKVVLARW--LARDPRVLILDEPTRGVDVGAK-AEIYRLIRELADA-GKAVLLIS 161 (182)
T ss_pred -CCCCCCCCHHHHHHCCCCCCHHHHHHHHHHHH--HHCCCCEEEECCCCCCCCHHHH-HHHHHHHHHHHHC-CCEEEEEE
T ss_conf -25678990999951855799899999999999--9719999998687545899999-9999999999978-99999996
Q ss_pred CCHHH-HHHHH
Q ss_conf 87579-76643
Q gi|254780750|r 771 HFHEL-TDLSK 780 (920)
Q Consensus 771 Hy~eL-~~l~~ 780 (920)
T Consensus 162 Hdl~~~~~~~D 172 (182)
T cd03215 162 SELDELLGLCD 172 (182)
T ss_pred CCHHHHHHHCC
T ss_conf 87999999799