HHsearch alignment for GI: 254780750 and conserved domain: cd03222

>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=98.04  E-value=0.00012  Score=53.05  Aligned_cols=111  Identities=23%  Similarity=0.270  Sum_probs=66.6

Q ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHCCCCCCCEEEEEEECC-C--CCCCCCCHHHHHHHHHHHHH
Q ss_conf             66439999677844078999999999999971985303532068221056765237-6--61138532899999999999
Q gi|254780750|r  648 NSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSA-D--NLASGRSTFMVEMIETASIL  724 (920)
Q Consensus       648 ~~~~~~iiTGpNmgGKSt~lRqval~vilAQiG~fVPA~~a~i~~~D~IftRiGa~-D--~l~~g~STF~vEm~e~~~IL  724 (920)
T Consensus        23 ~~GEiv~ilGpNGaGKSTllk~i~--------G~l~p~~G~-i~-~~g~--~~~~~pq~~~LSGGq------rQRv~iAr   84 (177)
T cd03222          23 KEGEVIGIVGPNGTGKTTAVKILA--------GQLIPNGDN-DE-WDGI--TPVYKPQYIDLSGGE------LQRVAIAA   84 (177)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHH--------CCCCCCCCC-EE-ECCC--CEECCCCCCCCCHHH------HHHHHHHH
T ss_conf             899899998999999999999996--------886788994-66-6686--122155515079899------99999999


Q ss_pred             HHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHH
Q ss_conf             95899856999325889880567999999999999726984999748757976
Q gi|254780750|r  725 NQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTD  777 (920)
Q Consensus       725 ~~at~~SLVllDElGrGTst~DG~aiA~aile~l~~~~~~~~lfaTHy~eL~~  777 (920)
T Consensus        85 al~~~p~lllLDEPts~LD~~~r~~-i~~~ik~l~~~~~~Tvl~vsHdl~~a~  136 (177)
T cd03222          85 ALLRNATFYLFDEPSAYLDIEQRLN-AARAIRRLSEEGKKTALVVEHDLAVLD  136 (177)
T ss_pred             HHHCCCCEEEECCCCCCCCHHHHHH-HHHHHHHHHHHCCCEEEEECCCHHHHH
T ss_conf             9823999999748865389999999-999999999965977999858899999