HHsearch alignment for GI: 254780750 and conserved domain: cd03222
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=98.04 E-value=0.00012 Score=53.05 Aligned_cols=111 Identities=23% Similarity=0.270 Sum_probs=66.6
Q ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHCCCCCCCEEEEEEECC-C--CCCCCCCHHHHHHHHHHHHH
Q ss_conf 66439999677844078999999999999971985303532068221056765237-6--61138532899999999999
Q gi|254780750|r 648 NSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVDKLFSRVGSA-D--NLASGRSTFMVEMIETASIL 724 (920)
Q Consensus 648 ~~~~~~iiTGpNmgGKSt~lRqval~vilAQiG~fVPA~~a~i~~~D~IftRiGa~-D--~l~~g~STF~vEm~e~~~IL 724 (920)
T Consensus 23 ~~GEiv~ilGpNGaGKSTllk~i~--------G~l~p~~G~-i~-~~g~--~~~~~pq~~~LSGGq------rQRv~iAr 84 (177)
T cd03222 23 KEGEVIGIVGPNGTGKTTAVKILA--------GQLIPNGDN-DE-WDGI--TPVYKPQYIDLSGGE------LQRVAIAA 84 (177)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHH--------CCCCCCCCC-EE-ECCC--CEECCCCCCCCCHHH------HHHHHHHH
T ss_conf 899899998999999999999996--------886788994-66-6686--122155515079899------99999999
Q ss_pred HHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHH
Q ss_conf 95899856999325889880567999999999999726984999748757976
Q gi|254780750|r 725 NQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFHELTD 777 (920)
Q Consensus 725 ~~at~~SLVllDElGrGTst~DG~aiA~aile~l~~~~~~~~lfaTHy~eL~~ 777 (920)
T Consensus 85 al~~~p~lllLDEPts~LD~~~r~~-i~~~ik~l~~~~~~Tvl~vsHdl~~a~ 136 (177)
T cd03222 85 ALLRNATFYLFDEPSAYLDIEQRLN-AARAIRRLSEEGKKTALVVEHDLAVLD 136 (177)
T ss_pred HHHCCCCEEEECCCCCCCCHHHHHH-HHHHHHHHHHHCCCEEEEECCCHHHHH
T ss_conf 9823999999748865389999999-999999999965977999858899999