HHsearch alignment for GI: 254780750 and conserved domain: cd03225
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=97.78 E-value=0.00013 Score=52.88 Aligned_cols=137 Identities=24% Similarity=0.306 Sum_probs=69.2
Q ss_pred EEEEEEEECCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCC---------CHHH--CCCCCC----CE-EE
Q ss_conf 44434563587777664399996778440789999999999999719853---------0353--206822----10-56
Q gi|254780750|r 634 FIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYV---------PASY--AHIGIV----DK-LF 697 (920)
Q Consensus 634 fVpNdi~l~~~~~~~~~~~~iiTGpNmgGKSt~lRqval~vilAQiG~fV---------PA~~--a~i~~~----D~-If 697 (920)
T Consensus 15 ~~L~~vsl~i----~~Gei~~iiG~nGaGKSTLlk~i~Gl~-~p~~G~I~~~g~~i~~~~~~~~~~~ig~v~Q~p~~~~~ 89 (211)
T cd03225 15 PALDDISLTI----KKGEFVLIVGPNGSGKSTLLRLLNGLL-GPTSGEVLVDGKDLTKLSLKELRRKVGLVFQNPDDQFF 89 (211)
T ss_pred EEEEEEEEEE----CCCCEEEEECCCCCCHHHHHHHHHCCC-CCCCCCEEECCEECCCCCHHHHHCCEEEEEECCHHHCC
T ss_conf 5775317888----499799998899998999999996467-79888778999999979989984038999778325305
Q ss_pred EEEECCCCCCC-----CCCHHHHHHHH-HHHHHH----------------------------HCCCCCEEEEECCCCCCC
Q ss_conf 76523766113-----85328999999-999999----------------------------589985699932588988
Q gi|254780750|r 698 SRVGSADNLAS-----GRSTFMVEMIE-TASILN----------------------------QATNQSFVILDEIGRGTA 743 (920)
Q Consensus 698 tRiGa~D~l~~-----g~STF~vEm~e-~~~IL~----------------------------~at~~SLVllDElGrGTs 743 (920)
T Consensus 90 ~-~tv~e~i~~~~~~~~~~~--~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGqkQrv~iAral~~~P~ililDEPTsgLD 166 (211)
T cd03225 90 G-PTVEEEVAFGLENLGLPE--EEIEERVEEALELVGLEGLRDRSPFTLSGGQKQRVAIAGVLAMDPDILLLDEPTAGLD 166 (211)
T ss_pred C-CCHHHHHHHHHHHCCCCH--HHHHHHHHHHHHHCCCHHHHHCCHHHCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCC
T ss_conf 5-869999999999869999--9999999999998699466638954599989999999999975999999979855589
Q ss_pred HHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHH-HHH
Q ss_conf 0567999999999999726984999748757976-643
Q gi|254780750|r 744 TLDGLSIAWATIEYLHETNRCRGLLATHFHELTD-LSK 780 (920)
Q Consensus 744 t~DG~aiA~aile~l~~~~~~~~lfaTHy~eL~~-l~~ 780 (920)
T Consensus 167 ~~~-~~~i~~~l~~l~~~-g~tii~itHdl~~~~~~~d 202 (211)
T cd03225 167 PAG-RRELLELLKKLKAE-GKTIIIVTHDLDLLLELAD 202 (211)
T ss_pred HHH-HHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHCC
T ss_conf 999-99999999999978-9999999259999999799