>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

Probab=97.83 E-value=0.00021 Score=51.33 Aligned_cols=123 Identities=27% Similarity=0.327 Sum_probs=66.7 Q ss_pred EEEEEEEECCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHCCC-------------------CCCC Q ss_conf 444345635877776643999967784407899999999999997198530353206-------------------8221 Q gi|254780750|r 634 FIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHI-------------------GIVD 694 (920) Q Consensus 634 fVpNdi~l~~~~~~~~~~~~iiTGpNmgGKSt~lRqval~vilAQiG~fVPA~~a~i-------------------~~~D 694 (920) T Consensus 16 ~iL~~isl~i----~~Ge~i~ivG~sGsGKSTLl~ll~--------gl~~p~~-G~I~i~g~~i~~~~~~~~~~~i~~v~ 82 (171) T cd03228 16 PVLKDVSLTI----KPGEKVAIVGPSGSGKSTLLKLLL--------RLYDPTS-GEILIDGVDLRDLDLESLRKNIAYVP 82 (171) T ss_pred CCEECEEEEE----CCCCEEEEECCCCCHHHHHHHHHH--------CCCCCCC-CEEEECCEECCCCCHHHHHHHEEEEC T ss_conf 6167718998----599899999999983999999997--------6775897-48999999988599899863189996 Q ss_pred ---EEEEEEECCCCC-CCCCCHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHH-CCCEEEEE Q ss_conf ---056765237661-1385328999999999999589985699932588988056799999999999972-69849997 Q gi|254780750|r 695 ---KLFSRVGSADNL-ASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHET-NRCRGLLA 769 (920) Q Consensus 695 ---~IftRiGa~D~l-~~g~STF~vEm~e~~~IL~~at~~SLVllDElGrGTst~DG~aiA~aile~l~~~-~~~~~lfa 769 (920) T Consensus 83 Q~~~lf~~-tv~eNiLSgGq----~Qri~lARal--~~~p~illlDEp---ts~LD~~~-~~~i~~~l~~~~~~~Tvi~v 151 (171) T cd03228 83 QDPFLFSG-TIRENILSGGQ----RQRIAIARAL--LRDPPILILDEA---TSALDPET-EALILEALRALAKGKTVIVI 151 (171) T ss_pred CCCCCCCC-CHHHHCCCHHH----HHHHHHHHHH--HHCCCEEEEECC---CCCCCHHH-HHHHHHHHHHHCCCCEEEEE T ss_conf 66843757-79997744889----9999999999--748998999577---66799899-99999999998099989999 Q ss_pred CCCHHHHHHHH Q ss_conf 48757976643 Q gi|254780750|r 770 THFHELTDLSK 780 (920) Q Consensus 770 THy~eL~~l~~ 780 (920) T Consensus 152 tH~~~~~~~~D 162 (171) T cd03228 152 AHRLSTIRDAD 162 (171) T ss_pred ECCHHHHHHCC T ss_conf 57999997099

HHsearch alignment for GI: 254780750 and conserved domain: cd03228