>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

Probab=97.99 E-value=0.00018 Score=51.91 Aligned_cols=130 Identities=26% Similarity=0.288 Sum_probs=78.8 Q ss_pred EEEEEEEECCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHCCCCCC-------------------- Q ss_conf 444345635877776643999967784407899999999999997198530353206822-------------------- Q gi|254780750|r 634 FIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIV-------------------- 693 (920) Q Consensus 634 fVpNdi~l~~~~~~~~~~~~iiTGpNmgGKSt~lRqval~vilAQiG~fVPA~~a~i~~~-------------------- 693 (920) T Consensus 14 ~~l~~vs~~i----~~Ge~~~ivGpSG~GKSTllr~i~--------Gl~~p~-~G~I~~~g~~i~~~~~~~~~~rr~ig~ 80 (178) T cd03229 14 TVLNDVSLNI----EAGEIVALLGPSGSGKSTLLRCIA--------GLEEPD-SGSILIDGEDLTDLEDELPPLRRRIGM 80 (178) T ss_pred EEECCCEEEE----CCCCEEEEECCCCCHHHHHHHHHH--------CCCCCC-CEEEEECCEECCCCCCHHHHHCCCEEE T ss_conf 9983707698----899899999999983999999998--------599999-639999999998886102454177599 Q ss_pred ----CEEEEEEECCCCCCCCCCHHHHHHHHHHHHHH-HCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEE Q ss_conf ----10567652376611385328999999999999-5899856999325889880567999999999999726984999 Q gi|254780750|r 694 ----DKLFSRVGSADNLASGRSTFMVEMIETASILN-QATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLL 768 (920) Q Consensus 694 ----D~IftRiGa~D~l~~g~STF~vEm~e~~~IL~-~at~~SLVllDElGrGTst~DG~aiA~aile~l~~~~~~~~lf 768 (920) T Consensus 81 vFQ~~~L~p~~tv~eNv~~~LSGGq---~QRvaIARAL~~~P~ill~DEPts~LD~~~~~~i-~~~l~~l~~~~~~t~i~ 156 (178) T cd03229 81 VFQDFALFPHLTVLENIALGLSGGQ---QQRVALARALAMDPDVLLLDEPTSALDPITRREV-RALLKSLQAQLGITVVL 156 (178) T ss_pred EECCCCCCCCCCHHHHHCEECCCHH---HHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHH-HHHHHHHHHHHCCEEEE T ss_conf 9269988998928996008177268---8999999998529999997089764799999999-99999999964999999 Q ss_pred ECCCHHHH-HHHH Q ss_conf 74875797-6643 Q gi|254780750|r 769 ATHFHELT-DLSK 780 (920) Q Consensus 769 aTHy~eL~-~l~~ 780 (920) T Consensus 157 vTHd~~~a~~~aD 169 (178) T cd03229 157 VTHDLDEAARLAD 169 (178) T ss_pred ECCCHHHHHHHCC T ss_conf 9899999998699

HHsearch alignment for GI: 254780750 and conserved domain: cd03229