HHsearch alignment for GI: 254780750 and conserved domain: cd03230
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.28 E-value=1.6e-05 Score=59.61 Aligned_cols=127 Identities=24% Similarity=0.365 Sum_probs=72.7
Q ss_pred EEEEEEECCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHCCCCCCC--------------------
Q ss_conf 443456358777766439999677844078999999999999971985303532068221--------------------
Q gi|254780750|r 635 IANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQMGSYVPASYAHIGIVD-------------------- 694 (920)
Q Consensus 635 VpNdi~l~~~~~~~~~~~~iiTGpNmgGKSt~lRqval~vilAQiG~fVPA~~a~i~~~D-------------------- 694 (920)
T Consensus 15 ~L~~vsl~i----~~Gei~gl~G~NGaGKSTLl~~i~--------Gl~~p-~~G~i~i~g~~~~~~~~~~~~~ig~v~q~ 81 (173)
T cd03230 15 ALDDISLTV----EKGEIYGLLGPNGAGKTTLIKIIL--------GLLKP-DSGEIKVLGKDIKKEPEEVKRRIGYLPEE 81 (173)
T ss_pred EEECEEEEE----CCCCEEEEECCCCCCHHHHHHHHH--------CCCCC-CCCEEEECCEECCCCHHHHHCCEEEEECC
T ss_conf 982208788----799399998789979999999997--------68577-87889999999886848886578999568
Q ss_pred -EEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEECCCH
Q ss_conf -0567652376611385328999999999999589985699932588988056799999999999972698499974875
Q gi|254780750|r 695 -KLFSRVGSADNLASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFH 773 (920)
Q Consensus 695 -~IftRiGa~D~l~~g~STF~vEm~e~~~IL~~at~~SLVllDElGrGTst~DG~aiA~aile~l~~~~~~~~lfaTHy~ 773 (920)
T Consensus 82 ~~l~~~ltv~e~l~--LSgG~kqrv~ia~a--l~~~p~lllLDEPt~gLD~~~~~~i-~~~i~~l~~~-g~tvi~~tH~l 155 (173)
T cd03230 82 PSLYENLTVRENLK--LSGGMKQRLALAQA--LLHDPELLILDEPTSGLDPESRREF-WELLRELKKE-GKTILLSSHIL 155 (173)
T ss_pred CCCCCCCCHHHHHH--CCHHHHHHHHHHHH--HHCCCCEEEECCCCCCCCHHHHHHH-HHHHHHHHHC-CCEEEEECCCH
T ss_conf 76671267789863--39899999999999--9649999999088657999999999-9999999968-99999992838
Q ss_pred HHH-HHHH
Q ss_conf 797-6643
Q gi|254780750|r 774 ELT-DLSK 780 (920)
Q Consensus 774 eL~-~l~~ 780 (920)
T Consensus 156 ~~~~~~~d 163 (173)
T cd03230 156 EEAERLCD 163 (173)
T ss_pred HHHHHHCC
T ss_conf 99998699