HHsearch alignment for GI: 254780750 and conserved domain: cd03232
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.15 E-value=0.00013 Score=53.02 Aligned_cols=136 Identities=19% Similarity=0.178 Sum_probs=66.8
Q ss_pred EEEEEEEECCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHC----------CCCCCHHH-CCCCCCCE---EEEE
Q ss_conf 4443456358777766439999677844078999999999999971----------98530353-20682210---5676
Q gi|254780750|r 634 FIANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLRQNALIVIMAQM----------GSYVPASY-AHIGIVDK---LFSR 699 (920)
Q Consensus 634 fVpNdi~l~~~~~~~~~~~~iiTGpNmgGKSt~lRqval~vilAQi----------G~fVPA~~-a~i~~~D~---IftR 699 (920)
T Consensus 21 ~vL~~is~~i----~~Ge~~~llGpnGaGKSTLl~~l~g~---~~~~~~~G~i~~~g~~~~~~~~~~igyv~q~~~~~~~ 93 (192)
T cd03232 21 QLLNNISGYV----KPGTLTALMGESGAGKTTLLDVLAGR---KTAGVITGEILINGRPLDKNFQRSTGYVEQQDVHSPN 93 (192)
T ss_pred EEEECCEEEE----ECCEEEEEECCCCCCHHHHHHHHHCC---CCCCCEEEEEEECCEECCHHHHHHEEEEECCHHCCCC
T ss_conf 9998838899----28839999999999889999998379---8788317899987827667756227999411330734
Q ss_pred EECCCCC-----CCCCCHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEECCCH-
Q ss_conf 5237661-----1385328999999999999589985699932588988056799999999999972698499974875-
Q gi|254780750|r 700 VGSADNL-----ASGRSTFMVEMIETASILNQATNQSFVILDEIGRGTATLDGLSIAWATIEYLHETNRCRGLLATHFH- 773 (920)
Q Consensus 700 iGa~D~l-----~~g~STF~vEm~e~~~IL~~at~~SLVllDElGrGTst~DG~aiA~aile~l~~~~~~~~lfaTHy~- 773 (920)
T Consensus 94 ~tv~e~l~~~~~l~~LS~gqrqrv~iA~--aL~~~P~lllLDEPt~gLD~~~~~~i-~~~l~~l~~~-g~tiii~th~~~ 169 (192)
T cd03232 94 LTVREALRFSALLRGLSVEQRKRLTIGV--ELAAKPSILFLDEPTSGLDSQAAYNI-VRFLKKLADS-GQAILCTIHQPS 169 (192)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHH--HHHCCCCEEEEECCCCCCCHHHHHHH-HHHHHHHHHC-CCEEEEEECCCH
T ss_conf 5499999866777337976765899999--98449988998488768898999999-9999999969-999999983637
Q ss_pred -HHHHHHH
Q ss_conf -7976643
Q gi|254780750|r 774 -ELTDLSK 780 (920)
Q Consensus 774 -eL~~l~~ 780 (920)
T Consensus 170 ~~i~~~~D 177 (192)
T cd03232 170 ASIFEKFD 177 (192)
T ss_pred HHHHHHCC
T ss_conf 99998799